Multiple sequence alignment - TraesCS4A01G006800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G006800 chr4A 100.000 3941 0 0 3668 7608 4529301 4525361 0.000000e+00 7278.0
1 TraesCS4A01G006800 chr4A 100.000 3436 0 0 1 3436 4532968 4529533 0.000000e+00 6346.0
2 TraesCS4A01G006800 chr4A 77.955 313 47 8 19 311 539325539 539325849 7.850000e-40 176.0
3 TraesCS4A01G006800 chr4A 90.090 111 10 1 6502 6612 30189608 30189717 7.960000e-30 143.0
4 TraesCS4A01G006800 chr4D 92.545 3890 171 61 3692 7539 466129191 466133003 0.000000e+00 5467.0
5 TraesCS4A01G006800 chr4D 86.252 1673 125 53 1150 2747 466126816 466128458 0.000000e+00 1718.0
6 TraesCS4A01G006800 chr4D 95.668 554 23 1 2883 3436 466128477 466129029 0.000000e+00 889.0
7 TraesCS4A01G006800 chr4D 90.751 173 12 3 574 745 466126087 466126256 2.140000e-55 228.0
8 TraesCS4A01G006800 chr4D 82.412 199 34 1 112 310 9477930 9478127 1.010000e-38 172.0
9 TraesCS4A01G006800 chr4D 82.564 195 31 3 119 311 303847118 303847311 1.310000e-37 169.0
10 TraesCS4A01G006800 chr4D 85.714 119 7 3 820 928 466126390 466126508 4.820000e-22 117.0
11 TraesCS4A01G006800 chr4B 93.219 2861 122 32 3692 6511 583592589 583595418 0.000000e+00 4143.0
12 TraesCS4A01G006800 chr4B 84.428 1644 102 59 1172 2747 583590129 583591686 0.000000e+00 1476.0
13 TraesCS4A01G006800 chr4B 89.873 553 48 5 2883 3434 583591705 583592250 0.000000e+00 704.0
14 TraesCS4A01G006800 chr4B 83.578 408 52 13 10 406 583588553 583588956 1.210000e-97 368.0
15 TraesCS4A01G006800 chr5B 80.782 307 53 6 6 310 383027939 383027637 1.280000e-57 235.0
16 TraesCS4A01G006800 chr7B 99.225 129 1 0 2745 2873 616550600 616550728 4.590000e-57 233.0
17 TraesCS4A01G006800 chr7B 97.710 131 3 0 2745 2875 736367490 736367620 7.680000e-55 226.0
18 TraesCS4A01G006800 chr1A 97.778 135 3 0 2742 2876 187375082 187375216 4.590000e-57 233.0
19 TraesCS4A01G006800 chr1A 98.462 130 2 0 2743 2872 574666555 574666426 5.940000e-56 230.0
20 TraesCS4A01G006800 chr3A 99.219 128 1 0 2745 2872 469077432 469077559 1.650000e-56 231.0
21 TraesCS4A01G006800 chr2D 99.219 128 1 0 2745 2872 592467982 592468109 1.650000e-56 231.0
22 TraesCS4A01G006800 chr2D 82.960 223 29 8 26 247 312445050 312444836 7.790000e-45 193.0
23 TraesCS4A01G006800 chr2D 88.393 112 13 0 6502 6613 531934941 531934830 1.330000e-27 135.0
24 TraesCS4A01G006800 chr2D 87.963 108 11 2 6507 6613 613222904 613223010 8.010000e-25 126.0
25 TraesCS4A01G006800 chr2A 97.778 135 2 1 2739 2873 70030629 70030762 1.650000e-56 231.0
26 TraesCS4A01G006800 chr2A 100.000 28 0 0 1316 1343 15854135 15854108 1.400000e-02 52.8
27 TraesCS4A01G006800 chr2A 100.000 28 0 0 1314 1341 762469445 762469472 1.400000e-02 52.8
28 TraesCS4A01G006800 chr7D 81.787 291 38 8 23 311 506676820 506676543 5.940000e-56 230.0
29 TraesCS4A01G006800 chr5D 98.473 131 0 2 2745 2874 36368935 36368806 5.940000e-56 230.0
30 TraesCS4A01G006800 chr5D 85.616 146 17 4 14 158 550290036 550290178 4.760000e-32 150.0
31 TraesCS4A01G006800 chr2B 98.473 131 1 1 2742 2872 603917339 603917210 5.940000e-56 230.0
32 TraesCS4A01G006800 chr2B 87.963 108 11 2 6507 6613 748558425 748558531 8.010000e-25 126.0
33 TraesCS4A01G006800 chr6B 82.906 234 38 1 23 256 122950903 122950672 7.740000e-50 209.0
34 TraesCS4A01G006800 chr6B 82.915 199 31 3 115 312 535392894 535392698 7.850000e-40 176.0
35 TraesCS4A01G006800 chr6B 89.899 99 10 0 6517 6615 72830316 72830218 2.230000e-25 128.0
36 TraesCS4A01G006800 chr6D 79.592 294 50 9 23 311 18778968 18778680 1.290000e-47 202.0
37 TraesCS4A01G006800 chr6D 88.889 99 11 0 6503 6601 399763203 399763105 1.040000e-23 122.0
38 TraesCS4A01G006800 chr6D 92.157 51 4 0 6537 6587 154598979 154598929 1.060000e-08 73.1
39 TraesCS4A01G006800 chr6A 85.354 198 25 4 115 310 411748047 411747852 1.290000e-47 202.0
40 TraesCS4A01G006800 chr3B 82.627 236 34 5 15 247 194276211 194276442 1.290000e-47 202.0
41 TraesCS4A01G006800 chrUn 78.601 243 32 9 15 256 315121629 315121406 7.960000e-30 143.0
42 TraesCS4A01G006800 chrUn 100.000 28 0 0 1316 1343 387380025 387380052 1.400000e-02 52.8
43 TraesCS4A01G006800 chr1D 89.474 76 8 0 6516 6591 393753209 393753284 6.280000e-16 97.1
44 TraesCS4A01G006800 chr5A 80.519 77 11 4 2840 2915 690307503 690307576 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G006800 chr4A 4525361 4532968 7607 True 6812.00 7278 100.0000 1 7608 2 chr4A.!!$R1 7607
1 TraesCS4A01G006800 chr4D 466126087 466133003 6916 False 1683.80 5467 90.1860 574 7539 5 chr4D.!!$F3 6965
2 TraesCS4A01G006800 chr4B 583588553 583595418 6865 False 1672.75 4143 87.7745 10 6511 4 chr4B.!!$F1 6501


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
612 867 0.034477 TCTTCCCCTTTCGGCAATCC 60.034 55.000 0.00 0.00 0.00 3.01 F
1575 2127 0.179032 TCTTTCTTGCTGGTTCCGCA 60.179 50.000 4.78 4.78 35.22 5.69 F
1620 2172 0.252239 GGGACAAGGGGCCAAGAATT 60.252 55.000 4.39 0.00 0.00 2.17 F
1988 2564 0.315251 TGTGTCTTCAGAGTCAGCCG 59.685 55.000 0.00 0.00 0.00 5.52 F
2061 2660 0.343372 ATTCCTCCCAGGACCTGCTA 59.657 55.000 16.72 4.94 45.78 3.49 F
2391 3002 0.604578 CACCACCTCCCTGCAAATTG 59.395 55.000 0.00 0.00 0.00 2.32 F
2868 3490 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20 F
2869 3491 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30 F
2870 3492 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85 F
2871 3493 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59 F
2872 3494 0.682209 TTTCCGGACGGAGGGAGTAG 60.682 60.000 13.64 0.00 46.06 2.57 F
2878 3500 0.842635 GACGGAGGGAGTAGGAGGTA 59.157 60.000 0.00 0.00 0.00 3.08 F
4524 5229 1.130561 GTCAAAACCTCAGGTATGCGC 59.869 52.381 0.00 0.00 33.12 6.09 F
5847 6575 0.319555 TGAACTTCCTGGAAGACGCG 60.320 55.000 36.38 15.89 41.71 6.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2562 3183 0.178975 AATGCACCCGGACCAAAGAA 60.179 50.000 0.73 0.0 0.00 2.52 R
2849 3471 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.0 44.66 2.12 R
2850 3472 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.0 44.66 1.89 R
2851 3473 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.0 44.66 1.40 R
2862 3484 1.218450 AGCTTACCTCCTACTCCCTCC 59.782 57.143 0.00 0.0 0.00 4.30 R
4150 4855 1.202818 GCTCTGACCCCAACAAGAACT 60.203 52.381 0.00 0.0 0.00 3.01 R
4505 5210 1.271108 TGCGCATACCTGAGGTTTTGA 60.271 47.619 10.53 0.0 37.09 2.69 R
4679 5388 2.575735 TCACCAACCATCCTAGATGCAA 59.424 45.455 0.00 0.0 0.00 4.08 R
4793 5502 3.206150 CCTGCCACTATTCTTGCGTATT 58.794 45.455 0.00 0.0 0.00 1.89 R
4937 5646 2.952310 GAGCTTTGGTGGTGAAGTTCTT 59.048 45.455 4.17 0.0 32.46 2.52 R
4949 5658 1.202818 GGTGAACTCCTGAGCTTTGGT 60.203 52.381 5.95 0.0 0.00 3.67 R
4982 5691 3.071023 TGATTCTCGGTGGTGAAGTTCTT 59.929 43.478 4.17 0.0 0.00 2.52 R
6336 7073 0.110644 CGAGACAGCGCAAAAGGAAC 60.111 55.000 11.47 0.0 0.00 3.62 R
6793 7549 0.322456 TCCCATTGTTTCTCCAGCGG 60.322 55.000 0.00 0.0 0.00 5.52 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.743718 CAGTGGCAGGAAGACGGT 59.256 61.111 0.00 0.00 0.00 4.83
21 22 1.669115 CAGTGGCAGGAAGACGGTG 60.669 63.158 0.00 0.00 0.00 4.94
34 35 2.280823 GACGGTGGATGGAGGACGAC 62.281 65.000 0.00 0.00 0.00 4.34
36 37 1.676678 CGGTGGATGGAGGACGACAT 61.677 60.000 0.00 0.00 0.00 3.06
37 38 0.179073 GGTGGATGGAGGACGACATG 60.179 60.000 0.00 0.00 0.00 3.21
38 39 0.179073 GTGGATGGAGGACGACATGG 60.179 60.000 0.00 0.00 0.00 3.66
49 50 2.390599 CGACATGGGCTTGTGGACG 61.391 63.158 0.00 0.00 0.00 4.79
74 75 1.737816 GCCACCGCCGTAGAATAGA 59.262 57.895 0.00 0.00 0.00 1.98
84 85 4.483311 GCCGTAGAATAGATTTAGGGTCG 58.517 47.826 0.00 0.00 0.00 4.79
88 89 5.707298 CGTAGAATAGATTTAGGGTCGGGTA 59.293 44.000 0.00 0.00 0.00 3.69
89 90 6.376581 CGTAGAATAGATTTAGGGTCGGGTAT 59.623 42.308 0.00 0.00 0.00 2.73
151 152 3.181514 CCGTGTTTGTATGAAATCCGGTC 60.182 47.826 0.00 0.00 0.00 4.79
170 172 4.236935 GGTCGTGTTTGCATGAATTTCAT 58.763 39.130 6.06 6.06 41.74 2.57
172 174 5.156355 GTCGTGTTTGCATGAATTTCATCT 58.844 37.500 8.95 0.00 41.74 2.90
174 176 5.048852 TCGTGTTTGCATGAATTTCATCTGA 60.049 36.000 8.95 0.00 37.67 3.27
235 243 1.170919 ATGACGTCCTCCCGTATCCG 61.171 60.000 14.12 0.00 41.98 4.18
237 245 2.056481 GACGTCCTCCCGTATCCGTG 62.056 65.000 3.51 0.00 41.98 4.94
246 254 1.226491 CGTATCCGTGTCCGTGGAC 60.226 63.158 12.17 12.17 44.77 4.02
259 267 2.667473 CGTGGACGGTTCTCCTATTT 57.333 50.000 0.00 0.00 35.37 1.40
261 269 2.007608 GTGGACGGTTCTCCTATTTGC 58.992 52.381 0.00 0.00 0.00 3.68
263 271 1.134907 GGACGGTTCTCCTATTTGCGA 60.135 52.381 0.00 0.00 0.00 5.10
265 273 3.195661 GACGGTTCTCCTATTTGCGAAT 58.804 45.455 4.21 4.21 0.00 3.34
270 278 4.023707 GGTTCTCCTATTTGCGAATGGATG 60.024 45.833 11.45 8.91 0.00 3.51
272 280 2.880268 CTCCTATTTGCGAATGGATGCA 59.120 45.455 11.45 0.00 39.81 3.96
273 281 3.489355 TCCTATTTGCGAATGGATGCAT 58.511 40.909 11.45 0.00 41.42 3.96
274 282 4.650734 TCCTATTTGCGAATGGATGCATA 58.349 39.130 11.45 0.00 41.42 3.14
276 284 5.181811 TCCTATTTGCGAATGGATGCATAAG 59.818 40.000 11.45 0.00 41.42 1.73
277 285 5.181811 CCTATTTGCGAATGGATGCATAAGA 59.818 40.000 11.45 0.00 41.42 2.10
286 294 6.560799 CGAATGGATGCATAAGAAAATTTGCG 60.561 38.462 0.00 0.00 37.92 4.85
287 295 5.321959 TGGATGCATAAGAAAATTTGCGA 57.678 34.783 0.00 0.00 37.92 5.10
291 299 6.972328 GGATGCATAAGAAAATTTGCGAGTTA 59.028 34.615 0.00 0.00 37.92 2.24
297 305 5.927954 AGAAAATTTGCGAGTTACCGTTA 57.072 34.783 0.00 0.00 0.00 3.18
300 308 5.526010 AAATTTGCGAGTTACCGTTAGAG 57.474 39.130 0.00 0.00 0.00 2.43
304 312 2.117910 GCGAGTTACCGTTAGAGATGC 58.882 52.381 0.00 0.00 0.00 3.91
312 320 1.269621 CCGTTAGAGATGCCCTTACCG 60.270 57.143 0.00 0.00 0.00 4.02
313 321 1.407979 CGTTAGAGATGCCCTTACCGT 59.592 52.381 0.00 0.00 0.00 4.83
315 323 2.429610 GTTAGAGATGCCCTTACCGTCA 59.570 50.000 0.00 0.00 0.00 4.35
316 324 1.115467 AGAGATGCCCTTACCGTCAG 58.885 55.000 0.00 0.00 0.00 3.51
317 325 0.824759 GAGATGCCCTTACCGTCAGT 59.175 55.000 0.00 0.00 0.00 3.41
319 327 2.429610 GAGATGCCCTTACCGTCAGTTA 59.570 50.000 0.00 0.00 0.00 2.24
320 328 2.167900 AGATGCCCTTACCGTCAGTTAC 59.832 50.000 0.00 0.00 0.00 2.50
329 339 1.935199 ACCGTCAGTTACCAAAACACG 59.065 47.619 0.00 0.00 0.00 4.49
362 372 4.917906 GGACTAATCCAAGCCCTATCAT 57.082 45.455 0.00 0.00 45.47 2.45
364 374 4.006319 GACTAATCCAAGCCCTATCATGC 58.994 47.826 0.00 0.00 0.00 4.06
370 380 0.554792 AAGCCCTATCATGCTTGCCT 59.445 50.000 0.00 0.00 45.60 4.75
380 390 1.530013 ATGCTTGCCTGCACTCCAAC 61.530 55.000 2.81 0.00 46.33 3.77
385 395 2.564721 GCCTGCACTCCAACCCAAC 61.565 63.158 0.00 0.00 0.00 3.77
392 402 2.359354 TCCAACCCAACGCGATGG 60.359 61.111 26.95 26.95 40.35 3.51
394 404 3.361158 CAACCCAACGCGATGGCA 61.361 61.111 28.29 0.00 39.26 4.92
410 420 4.157817 CAAACTTGCTCGCATGGC 57.842 55.556 9.21 0.00 0.00 4.40
413 423 3.574074 AACTTGCTCGCATGGCCCT 62.574 57.895 0.00 0.00 0.00 5.19
414 424 2.753043 CTTGCTCGCATGGCCCTT 60.753 61.111 0.00 0.00 0.00 3.95
415 425 3.060020 CTTGCTCGCATGGCCCTTG 62.060 63.158 0.00 0.00 0.00 3.61
416 426 3.866379 TTGCTCGCATGGCCCTTGT 62.866 57.895 0.00 0.00 0.00 3.16
417 427 3.512516 GCTCGCATGGCCCTTGTC 61.513 66.667 0.00 0.00 0.00 3.18
419 429 4.776322 TCGCATGGCCCTTGTCGG 62.776 66.667 0.00 0.00 0.00 4.79
420 430 4.776322 CGCATGGCCCTTGTCGGA 62.776 66.667 0.00 0.00 33.16 4.55
430 637 1.605712 CCCTTGTCGGATAATCGGAGC 60.606 57.143 0.00 0.00 33.16 4.70
449 656 0.436150 CATATCGCGACGAATGGCTG 59.564 55.000 12.93 0.00 39.99 4.85
480 735 3.430565 CTGCTCAGCCGCGGTATCA 62.431 63.158 28.70 16.00 0.00 2.15
487 742 1.956170 GCCGCGGTATCATCAGTGG 60.956 63.158 28.70 0.00 36.53 4.00
493 748 2.311463 CGGTATCATCAGTGGAGGTCT 58.689 52.381 0.00 0.00 0.00 3.85
497 752 2.919772 TCATCAGTGGAGGTCTACCA 57.080 50.000 1.26 0.00 38.89 3.25
513 768 5.049405 GGTCTACCACAGAAACAGAAACATG 60.049 44.000 0.00 0.00 34.17 3.21
538 793 1.241165 CGTCCACTAAACAAACCCCC 58.759 55.000 0.00 0.00 0.00 5.40
554 809 2.583472 CCCCCAAAAAGCTAGCTGG 58.417 57.895 20.16 15.78 0.00 4.85
556 811 2.583472 CCCAAAAAGCTAGCTGGGG 58.417 57.895 25.43 23.79 44.22 4.96
557 812 1.607801 CCCAAAAAGCTAGCTGGGGC 61.608 60.000 25.43 0.00 44.22 5.80
558 813 0.899717 CCAAAAAGCTAGCTGGGGCA 60.900 55.000 20.16 0.00 41.70 5.36
559 814 0.529378 CAAAAAGCTAGCTGGGGCAG 59.471 55.000 20.16 2.86 41.70 4.85
560 815 0.405585 AAAAAGCTAGCTGGGGCAGA 59.594 50.000 20.16 0.00 41.70 4.26
561 816 0.034670 AAAAGCTAGCTGGGGCAGAG 60.035 55.000 20.16 0.00 41.70 3.35
562 817 2.549169 AAAGCTAGCTGGGGCAGAGC 62.549 60.000 20.16 0.00 44.64 4.09
579 834 2.043450 CCAGCGAGGGAGAGGAGT 60.043 66.667 0.00 0.00 0.00 3.85
595 850 4.165372 AGAGGAGTAGAGGAATCGTTCTCT 59.835 45.833 0.00 0.00 42.37 3.10
599 854 3.955551 AGTAGAGGAATCGTTCTCTTCCC 59.044 47.826 0.00 0.00 41.59 3.97
600 855 2.112190 AGAGGAATCGTTCTCTTCCCC 58.888 52.381 0.00 0.00 41.59 4.81
602 857 2.502130 GAGGAATCGTTCTCTTCCCCTT 59.498 50.000 0.00 0.00 41.59 3.95
603 858 2.913617 AGGAATCGTTCTCTTCCCCTTT 59.086 45.455 0.00 0.00 41.59 3.11
604 859 3.055021 AGGAATCGTTCTCTTCCCCTTTC 60.055 47.826 0.00 0.00 41.59 2.62
605 860 2.674796 ATCGTTCTCTTCCCCTTTCG 57.325 50.000 0.00 0.00 0.00 3.46
606 861 0.606604 TCGTTCTCTTCCCCTTTCGG 59.393 55.000 0.00 0.00 0.00 4.30
607 862 1.019805 CGTTCTCTTCCCCTTTCGGC 61.020 60.000 0.00 0.00 0.00 5.54
608 863 0.036306 GTTCTCTTCCCCTTTCGGCA 59.964 55.000 0.00 0.00 0.00 5.69
609 864 0.768622 TTCTCTTCCCCTTTCGGCAA 59.231 50.000 0.00 0.00 0.00 4.52
610 865 0.991920 TCTCTTCCCCTTTCGGCAAT 59.008 50.000 0.00 0.00 0.00 3.56
611 866 1.065418 TCTCTTCCCCTTTCGGCAATC 60.065 52.381 0.00 0.00 0.00 2.67
612 867 0.034477 TCTTCCCCTTTCGGCAATCC 60.034 55.000 0.00 0.00 0.00 3.01
613 868 1.000145 TTCCCCTTTCGGCAATCCC 60.000 57.895 0.00 0.00 0.00 3.85
626 881 2.757124 AATCCCCTCATCCCCGTGC 61.757 63.158 0.00 0.00 0.00 5.34
657 912 3.377172 AGACCAAGACACGAACAAAAAGG 59.623 43.478 0.00 0.00 0.00 3.11
658 913 3.349022 ACCAAGACACGAACAAAAAGGA 58.651 40.909 0.00 0.00 0.00 3.36
659 914 3.377172 ACCAAGACACGAACAAAAAGGAG 59.623 43.478 0.00 0.00 0.00 3.69
660 915 3.243068 CCAAGACACGAACAAAAAGGAGG 60.243 47.826 0.00 0.00 0.00 4.30
661 916 3.553828 AGACACGAACAAAAAGGAGGA 57.446 42.857 0.00 0.00 0.00 3.71
662 917 3.203716 AGACACGAACAAAAAGGAGGAC 58.796 45.455 0.00 0.00 0.00 3.85
663 918 2.289820 GACACGAACAAAAAGGAGGACC 59.710 50.000 0.00 0.00 0.00 4.46
778 1070 3.045142 CTGTGTTTGGCCTGCTGG 58.955 61.111 3.32 5.03 0.00 4.85
867 1187 4.348495 GACCTCCCTCCCACCCCA 62.348 72.222 0.00 0.00 0.00 4.96
890 1220 4.462280 CCCCTCCCCGTTGTACGC 62.462 72.222 0.00 0.00 40.91 4.42
899 1229 1.060713 CCGTTGTACGCACTCTTCTG 58.939 55.000 0.00 0.00 40.91 3.02
910 1240 1.078567 CTCTTCTGGCTGCTCCACC 60.079 63.158 0.00 0.00 40.72 4.61
947 1297 1.667236 TGCAACGGAGCATTCATAGG 58.333 50.000 0.00 0.00 40.11 2.57
955 1305 3.648009 GGAGCATTCATAGGAGAACGAG 58.352 50.000 0.00 0.00 0.00 4.18
959 1309 3.319405 GCATTCATAGGAGAACGAGGAGA 59.681 47.826 0.00 0.00 0.00 3.71
960 1310 4.021544 GCATTCATAGGAGAACGAGGAGAT 60.022 45.833 0.00 0.00 0.00 2.75
961 1311 5.708948 CATTCATAGGAGAACGAGGAGATC 58.291 45.833 0.00 0.00 0.00 2.75
987 1365 1.399791 GCAATTCAGAGGAAGAAGGCG 59.600 52.381 0.00 0.00 36.25 5.52
1025 1423 1.792949 GTCGCGGTACCATTCATGATC 59.207 52.381 13.54 0.00 0.00 2.92
1036 1434 4.178540 CCATTCATGATCAAGGTTTGTGC 58.821 43.478 0.00 0.00 0.00 4.57
1056 1460 2.236690 CGCACACGTAGTACAGTACAC 58.763 52.381 13.37 8.06 41.61 2.90
1076 1480 1.447140 GGAGCGGTGCATGTTACGA 60.447 57.895 0.00 0.00 0.00 3.43
1077 1481 1.421410 GGAGCGGTGCATGTTACGAG 61.421 60.000 0.00 2.05 0.00 4.18
1081 1485 0.796312 CGGTGCATGTTACGAGCTTT 59.204 50.000 0.00 0.00 0.00 3.51
1109 1616 2.256591 ACGTGGCAGCAGCAAAGAG 61.257 57.895 2.65 0.00 44.61 2.85
1225 1743 2.403987 CGTCGCCTACCTCGTCTG 59.596 66.667 0.00 0.00 0.00 3.51
1226 1744 2.102553 GTCGCCTACCTCGTCTGC 59.897 66.667 0.00 0.00 0.00 4.26
1227 1745 3.138798 TCGCCTACCTCGTCTGCC 61.139 66.667 0.00 0.00 0.00 4.85
1228 1746 3.141488 CGCCTACCTCGTCTGCCT 61.141 66.667 0.00 0.00 0.00 4.75
1229 1747 2.809010 GCCTACCTCGTCTGCCTC 59.191 66.667 0.00 0.00 0.00 4.70
1230 1748 2.787567 GCCTACCTCGTCTGCCTCC 61.788 68.421 0.00 0.00 0.00 4.30
1249 1767 1.111277 CCCCTTTTTATTCCGCCCTG 58.889 55.000 0.00 0.00 0.00 4.45
1318 1839 2.669240 GACTTTCCACCTCCCCGG 59.331 66.667 0.00 0.00 39.35 5.73
1382 1903 2.096248 CGAAAGGTACTGCTCCTCTCT 58.904 52.381 0.00 0.00 40.86 3.10
1391 1913 0.616111 TGCTCCTCTCTCTGTTCCCC 60.616 60.000 0.00 0.00 0.00 4.81
1470 1993 2.287248 GCCGCTCCTTGCTTTTCATATC 60.287 50.000 0.00 0.00 40.11 1.63
1560 2112 2.128035 CACGACTCGAGCTGTTTCTTT 58.872 47.619 13.61 0.00 0.00 2.52
1574 2126 0.951558 TTCTTTCTTGCTGGTTCCGC 59.048 50.000 0.00 0.00 0.00 5.54
1575 2127 0.179032 TCTTTCTTGCTGGTTCCGCA 60.179 50.000 4.78 4.78 35.22 5.69
1598 2150 1.676967 CCCTGGTTCTTGCTCCTGC 60.677 63.158 0.00 0.00 40.20 4.85
1608 2160 2.743928 GCTCCTGCACGGGACAAG 60.744 66.667 0.00 0.00 39.41 3.16
1617 2169 3.646715 CGGGACAAGGGGCCAAGA 61.647 66.667 4.39 0.00 0.00 3.02
1618 2170 2.851045 GGGACAAGGGGCCAAGAA 59.149 61.111 4.39 0.00 0.00 2.52
1619 2171 1.388133 GGGACAAGGGGCCAAGAAT 59.612 57.895 4.39 0.00 0.00 2.40
1620 2172 0.252239 GGGACAAGGGGCCAAGAATT 60.252 55.000 4.39 0.00 0.00 2.17
1621 2173 1.644509 GGACAAGGGGCCAAGAATTT 58.355 50.000 4.39 0.00 0.00 1.82
1622 2174 1.550524 GGACAAGGGGCCAAGAATTTC 59.449 52.381 4.39 0.00 0.00 2.17
1623 2175 2.529632 GACAAGGGGCCAAGAATTTCT 58.470 47.619 4.39 0.00 0.00 2.52
1624 2176 2.232208 GACAAGGGGCCAAGAATTTCTG 59.768 50.000 4.39 0.00 0.00 3.02
1625 2177 2.250924 CAAGGGGCCAAGAATTTCTGT 58.749 47.619 4.39 0.00 0.00 3.41
1626 2178 1.928868 AGGGGCCAAGAATTTCTGTG 58.071 50.000 4.39 1.39 0.00 3.66
1627 2179 0.897621 GGGGCCAAGAATTTCTGTGG 59.102 55.000 4.39 16.78 31.92 4.17
1628 2180 1.632589 GGGCCAAGAATTTCTGTGGT 58.367 50.000 19.70 0.00 31.62 4.16
1630 2182 2.368548 GGGCCAAGAATTTCTGTGGTTT 59.631 45.455 19.70 0.00 31.62 3.27
1689 2252 0.798776 ATTCTCTCGCGGTTTGCTTG 59.201 50.000 6.13 0.00 43.27 4.01
1692 2255 2.127118 CTCGCGGTTTGCTTGCAG 60.127 61.111 6.13 0.00 43.27 4.41
1701 2264 3.060339 CGGTTTGCTTGCAGAATTTGTTC 60.060 43.478 0.00 0.00 0.00 3.18
1703 2266 4.571984 GGTTTGCTTGCAGAATTTGTTCTT 59.428 37.500 0.00 0.00 0.00 2.52
1708 2272 2.247358 TGCAGAATTTGTTCTTCCCCC 58.753 47.619 0.00 0.00 0.00 5.40
1709 2273 2.158325 TGCAGAATTTGTTCTTCCCCCT 60.158 45.455 0.00 0.00 0.00 4.79
1710 2274 2.899900 GCAGAATTTGTTCTTCCCCCTT 59.100 45.455 0.00 0.00 0.00 3.95
1714 2278 2.375014 TTTGTTCTTCCCCCTTGGAC 57.625 50.000 0.00 0.00 45.11 4.02
1788 2353 4.752661 TTTTAGTTTCGTGATTTCCGGG 57.247 40.909 0.00 0.00 0.00 5.73
1820 2385 5.690857 GGATAGCTTATCGTCTTGGTAACAC 59.309 44.000 0.00 0.00 40.75 3.32
1848 2413 2.359975 CCGTGAAGCAACCCCCTC 60.360 66.667 0.00 0.00 0.00 4.30
1869 2434 6.346096 CCTCGACTTCAATTCTGGGTATTTA 58.654 40.000 0.00 0.00 0.00 1.40
1870 2435 6.992715 CCTCGACTTCAATTCTGGGTATTTAT 59.007 38.462 0.00 0.00 0.00 1.40
1911 2482 5.636121 ACGATCGTTATGTACTTTTGCTTCA 59.364 36.000 16.60 0.00 0.00 3.02
1912 2483 6.178507 CGATCGTTATGTACTTTTGCTTCAG 58.821 40.000 7.03 0.00 0.00 3.02
1913 2484 6.034577 CGATCGTTATGTACTTTTGCTTCAGA 59.965 38.462 7.03 0.00 0.00 3.27
1914 2485 7.411480 CGATCGTTATGTACTTTTGCTTCAGAA 60.411 37.037 7.03 0.00 0.00 3.02
1940 2511 2.717639 TGCTCTCCTGGAAATTAGGC 57.282 50.000 0.00 0.00 35.23 3.93
1973 2549 7.756395 AGACATCAATCTCATTTTTCTGTGT 57.244 32.000 0.00 0.00 0.00 3.72
1988 2564 0.315251 TGTGTCTTCAGAGTCAGCCG 59.685 55.000 0.00 0.00 0.00 5.52
2023 2599 1.134220 TCCTGTTTTTGGTCTCGCTGT 60.134 47.619 0.00 0.00 0.00 4.40
2031 2607 0.824109 TGGTCTCGCTGTATTCCTGG 59.176 55.000 0.00 0.00 0.00 4.45
2060 2659 1.083706 ATTCCTCCCAGGACCTGCT 59.916 57.895 16.72 0.00 45.78 4.24
2061 2660 0.343372 ATTCCTCCCAGGACCTGCTA 59.657 55.000 16.72 4.94 45.78 3.49
2083 2682 4.431416 TTTCTTGGCTTGTTAGGTCTCA 57.569 40.909 0.00 0.00 0.00 3.27
2091 2690 3.565902 GCTTGTTAGGTCTCACTTTTGCT 59.434 43.478 0.00 0.00 0.00 3.91
2093 2692 3.476552 TGTTAGGTCTCACTTTTGCTGG 58.523 45.455 0.00 0.00 0.00 4.85
2097 2705 1.268079 GGTCTCACTTTTGCTGGCTTC 59.732 52.381 0.00 0.00 0.00 3.86
2119 2727 7.550906 GCTTCAAGTCAAGAAACAGATATAGGT 59.449 37.037 0.00 0.00 0.00 3.08
2156 2764 1.347707 TCACGCAGGATTTCAGTCCTT 59.652 47.619 0.00 0.00 46.45 3.36
2174 2783 4.401519 GTCCTTAAAATCTTGTTAGGGGGC 59.598 45.833 0.00 0.00 30.58 5.80
2175 2784 3.704566 CCTTAAAATCTTGTTAGGGGGCC 59.295 47.826 0.00 0.00 0.00 5.80
2176 2785 4.349365 CTTAAAATCTTGTTAGGGGGCCA 58.651 43.478 4.39 0.00 0.00 5.36
2322 2933 6.976350 CTTTGCTGTAAAGCTAAGAAACAC 57.024 37.500 20.57 0.00 45.65 3.32
2323 2934 5.432885 TTGCTGTAAAGCTAAGAAACACC 57.567 39.130 6.43 0.00 35.49 4.16
2343 2954 5.296035 ACACCGGTACTTCTTTTCTCTTTTG 59.704 40.000 6.87 0.00 0.00 2.44
2348 2959 7.094762 CCGGTACTTCTTTTCTCTTTTGCTAAT 60.095 37.037 0.00 0.00 0.00 1.73
2387 2998 2.528818 CCTCACCACCTCCCTGCAA 61.529 63.158 0.00 0.00 0.00 4.08
2391 3002 0.604578 CACCACCTCCCTGCAAATTG 59.395 55.000 0.00 0.00 0.00 2.32
2421 3032 7.172703 AGTTTTGGGATTAGACGTTTCTAGTTG 59.827 37.037 0.00 0.00 35.67 3.16
2433 3044 5.351465 ACGTTTCTAGTTGGATATGTTGCTG 59.649 40.000 0.00 0.00 0.00 4.41
2434 3045 5.351465 CGTTTCTAGTTGGATATGTTGCTGT 59.649 40.000 0.00 0.00 0.00 4.40
2435 3046 6.533723 CGTTTCTAGTTGGATATGTTGCTGTA 59.466 38.462 0.00 0.00 0.00 2.74
2436 3047 7.464178 CGTTTCTAGTTGGATATGTTGCTGTAC 60.464 40.741 0.00 0.00 0.00 2.90
2553 3174 1.070758 TGTCAGGGCTCTGTTTCAGTC 59.929 52.381 14.66 0.00 41.59 3.51
2554 3175 0.687354 TCAGGGCTCTGTTTCAGTCC 59.313 55.000 14.66 0.00 41.59 3.85
2555 3176 0.689623 CAGGGCTCTGTTTCAGTCCT 59.310 55.000 5.06 0.00 36.30 3.85
2556 3177 1.072965 CAGGGCTCTGTTTCAGTCCTT 59.927 52.381 5.06 0.00 36.30 3.36
2557 3178 1.777272 AGGGCTCTGTTTCAGTCCTTT 59.223 47.619 0.00 0.00 32.61 3.11
2558 3179 1.882623 GGGCTCTGTTTCAGTCCTTTG 59.117 52.381 0.00 0.00 32.61 2.77
2559 3180 2.576615 GGCTCTGTTTCAGTCCTTTGT 58.423 47.619 0.00 0.00 32.61 2.83
2560 3181 2.952310 GGCTCTGTTTCAGTCCTTTGTT 59.048 45.455 0.00 0.00 32.61 2.83
2561 3182 3.003793 GGCTCTGTTTCAGTCCTTTGTTC 59.996 47.826 0.00 0.00 32.61 3.18
2562 3183 3.879892 GCTCTGTTTCAGTCCTTTGTTCT 59.120 43.478 0.00 0.00 32.61 3.01
2681 3302 5.106908 CCACATGGTTCGTTTTTGTTGTTTT 60.107 36.000 0.00 0.00 0.00 2.43
2715 3336 6.960992 GTCCAATGCAGTTTTTGTTTCTTTTC 59.039 34.615 0.00 0.00 0.00 2.29
2731 3353 9.225436 TGTTTCTTTTCTTTAAAGTTGCCAAAT 57.775 25.926 14.74 0.00 43.12 2.32
2747 3369 3.127030 GCCAAATCTGTGCTGTTAGGTAC 59.873 47.826 0.00 0.00 0.00 3.34
2748 3370 4.579869 CCAAATCTGTGCTGTTAGGTACT 58.420 43.478 0.00 0.00 46.37 2.73
2749 3371 4.631813 CCAAATCTGTGCTGTTAGGTACTC 59.368 45.833 0.00 0.00 41.75 2.59
2750 3372 4.473477 AATCTGTGCTGTTAGGTACTCC 57.527 45.455 0.00 0.00 41.75 3.85
2751 3373 2.176889 TCTGTGCTGTTAGGTACTCCC 58.823 52.381 0.00 0.00 41.75 4.30
2753 3375 2.166664 CTGTGCTGTTAGGTACTCCCTC 59.833 54.545 0.00 0.00 44.81 4.30
2754 3376 1.481363 GTGCTGTTAGGTACTCCCTCC 59.519 57.143 0.00 0.00 44.81 4.30
2756 3378 1.959028 GCTGTTAGGTACTCCCTCCGT 60.959 57.143 0.00 0.00 44.81 4.69
2757 3379 2.022934 CTGTTAGGTACTCCCTCCGTC 58.977 57.143 0.00 0.00 44.81 4.79
2761 3383 1.379044 GGTACTCCCTCCGTCCGAA 60.379 63.158 0.00 0.00 0.00 4.30
2762 3384 0.967380 GGTACTCCCTCCGTCCGAAA 60.967 60.000 0.00 0.00 0.00 3.46
2763 3385 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
2764 3386 1.479730 GTACTCCCTCCGTCCGAAAAT 59.520 52.381 0.00 0.00 0.00 1.82
2765 3387 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
2766 3388 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
2767 3389 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
2768 3390 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
2769 3391 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
2770 3392 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
2771 3393 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
2772 3394 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
2773 3395 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
2774 3396 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
2775 3397 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
2776 3398 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
2777 3399 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
2778 3400 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
2779 3401 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
2780 3402 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
2781 3403 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
2782 3404 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
2783 3405 7.975616 CCGAAAATACTTGTCATCAAAATGGAT 59.024 33.333 0.00 0.00 33.42 3.41
2837 3459 9.170890 ACATCTAGATACATCCCCTTTTATTCA 57.829 33.333 4.54 0.00 0.00 2.57
2843 3465 9.713684 AGATACATCCCCTTTTATTCATTTTGA 57.286 29.630 0.00 0.00 0.00 2.69
2846 3468 8.378115 ACATCCCCTTTTATTCATTTTGATGA 57.622 30.769 0.00 0.00 32.39 2.92
2847 3469 8.260114 ACATCCCCTTTTATTCATTTTGATGAC 58.740 33.333 0.00 0.00 32.39 3.06
2848 3470 7.789202 TCCCCTTTTATTCATTTTGATGACA 57.211 32.000 0.00 0.00 0.00 3.58
2849 3471 8.200024 TCCCCTTTTATTCATTTTGATGACAA 57.800 30.769 0.00 0.00 0.00 3.18
2850 3472 8.313292 TCCCCTTTTATTCATTTTGATGACAAG 58.687 33.333 0.00 0.00 37.32 3.16
2851 3473 8.096414 CCCCTTTTATTCATTTTGATGACAAGT 58.904 33.333 0.00 0.00 37.32 3.16
2858 3480 8.915871 ATTCATTTTGATGACAAGTATTTCCG 57.084 30.769 0.00 0.00 37.32 4.30
2859 3481 6.851609 TCATTTTGATGACAAGTATTTCCGG 58.148 36.000 0.00 0.00 37.32 5.14
2860 3482 6.657117 TCATTTTGATGACAAGTATTTCCGGA 59.343 34.615 0.00 0.00 37.32 5.14
2861 3483 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
2862 3484 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
2863 3485 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
2864 3486 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
2865 3487 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
2866 3488 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
2867 3489 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
2868 3490 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
2869 3491 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
2870 3492 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
2871 3493 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
2872 3494 0.682209 TTTCCGGACGGAGGGAGTAG 60.682 60.000 13.64 0.00 46.06 2.57
2873 3495 2.518825 CCGGACGGAGGGAGTAGG 60.519 72.222 4.40 0.00 37.50 3.18
2874 3496 2.593978 CGGACGGAGGGAGTAGGA 59.406 66.667 0.00 0.00 0.00 2.94
2875 3497 1.526455 CGGACGGAGGGAGTAGGAG 60.526 68.421 0.00 0.00 0.00 3.69
2876 3498 1.152715 GGACGGAGGGAGTAGGAGG 60.153 68.421 0.00 0.00 0.00 4.30
2877 3499 1.614160 GACGGAGGGAGTAGGAGGT 59.386 63.158 0.00 0.00 0.00 3.85
2878 3500 0.842635 GACGGAGGGAGTAGGAGGTA 59.157 60.000 0.00 0.00 0.00 3.08
2879 3501 1.213926 GACGGAGGGAGTAGGAGGTAA 59.786 57.143 0.00 0.00 0.00 2.85
2881 3503 1.707106 GGAGGGAGTAGGAGGTAAGC 58.293 60.000 0.00 0.00 0.00 3.09
2895 3517 9.245481 GTAGGAGGTAAGCTCTTACATATATGT 57.755 37.037 21.57 21.57 45.32 2.29
2898 3520 8.808092 GGAGGTAAGCTCTTACATATATGTTCT 58.192 37.037 22.90 10.11 45.32 3.01
3019 3641 3.513680 TCATGATCAAGCCAACATTGC 57.486 42.857 0.00 0.00 0.00 3.56
3115 3737 4.392047 TGTTGCATTCATCTTCAGACAGT 58.608 39.130 0.00 0.00 0.00 3.55
3216 3838 2.972625 TGTGCGTTAGAATTCCTCCAG 58.027 47.619 0.65 0.00 0.00 3.86
3218 3840 2.930682 GTGCGTTAGAATTCCTCCAGAC 59.069 50.000 0.65 0.00 0.00 3.51
3229 3851 2.726821 TCCTCCAGACCAAAATCATGC 58.273 47.619 0.00 0.00 0.00 4.06
3258 3880 7.607250 TGAATATTTTTCCAGTGCCGTATTTT 58.393 30.769 0.00 0.00 0.00 1.82
3341 3963 5.928976 TGCTGGAGCTTATGTATATGTTGT 58.071 37.500 0.00 0.00 42.66 3.32
4069 4774 8.497745 ACATATGTGTCTTTATCAAAGGAGGAT 58.502 33.333 7.78 0.00 39.01 3.24
4150 4855 1.140852 CAGTCCAGTGTTCCTGTTCCA 59.859 52.381 0.00 0.00 39.74 3.53
4459 5164 2.288825 TGGAGGAAGTAGTGTTTGCGAG 60.289 50.000 0.00 0.00 0.00 5.03
4524 5229 1.130561 GTCAAAACCTCAGGTATGCGC 59.869 52.381 0.00 0.00 33.12 6.09
4531 5236 1.270465 CCTCAGGTATGCGCATGATCA 60.270 52.381 32.48 10.12 0.00 2.92
4565 5274 6.809630 TGAAATATGATCAACAACGGAACA 57.190 33.333 0.00 0.00 0.00 3.18
4566 5275 6.607689 TGAAATATGATCAACAACGGAACAC 58.392 36.000 0.00 0.00 0.00 3.32
4597 5306 6.185114 AGCTATATTGTGGCTCTGAGAATT 57.815 37.500 9.28 0.00 41.29 2.17
4705 5414 5.687441 GCATCTAGGATGGTTGGTGATTACA 60.687 44.000 9.18 0.00 0.00 2.41
4710 5419 4.160252 AGGATGGTTGGTGATTACATTTGC 59.840 41.667 0.00 0.00 0.00 3.68
4742 5451 3.704061 TGCAGGAAAGGCCAAATATTACC 59.296 43.478 5.01 0.00 40.02 2.85
4772 5481 6.604735 AATAATGCCAAGTTAGCTTCTACG 57.395 37.500 0.00 0.00 31.49 3.51
4774 5483 3.232213 TGCCAAGTTAGCTTCTACGAG 57.768 47.619 0.00 0.00 31.49 4.18
4793 5502 9.017509 TCTACGAGACAAGAAGTTAATAAGGAA 57.982 33.333 0.00 0.00 0.00 3.36
4937 5646 1.228094 TTCACCATCAACGCCAGCA 60.228 52.632 0.00 0.00 0.00 4.41
4949 5658 1.165907 CGCCAGCAAGAACTTCACCA 61.166 55.000 0.00 0.00 0.00 4.17
4982 5691 3.705934 TTCACCACCAACGCCAGCA 62.706 57.895 0.00 0.00 0.00 4.41
5005 5714 3.071023 AGAACTTCACCACCGAGAATCAA 59.929 43.478 0.00 0.00 33.17 2.57
5191 5900 9.793259 ATTTCAGGTCTTCTATTAGTTGAACAA 57.207 29.630 0.00 0.00 0.00 2.83
5197 5906 7.148787 GGTCTTCTATTAGTTGAACAAGTGTCG 60.149 40.741 0.00 0.00 0.00 4.35
5201 5910 7.650890 TCTATTAGTTGAACAAGTGTCGTGTA 58.349 34.615 0.00 0.00 0.00 2.90
5206 5915 5.690409 AGTTGAACAAGTGTCGTGTATGTAG 59.310 40.000 0.00 0.00 0.00 2.74
5300 6023 6.864685 ACATGCTGTACATTCATTTCTTTGTG 59.135 34.615 0.00 0.00 36.64 3.33
5311 6034 4.462483 TCATTTCTTTGTGGTGAATAGGCC 59.538 41.667 0.00 0.00 0.00 5.19
5356 6079 3.566351 TCTTATAGTAGCAGCAGAGGCA 58.434 45.455 0.00 0.00 44.61 4.75
5423 6146 5.337089 GGGTAAGTAGTACACCTCTGTTTCC 60.337 48.000 9.11 0.00 34.01 3.13
5424 6147 5.244626 GGTAAGTAGTACACCTCTGTTTCCA 59.755 44.000 2.52 0.00 34.01 3.53
5664 6392 1.836166 CCAGAGAAGGAGAAGCCATCA 59.164 52.381 0.00 0.00 36.83 3.07
5736 6464 1.211969 CCCCGACGATGCCTATACG 59.788 63.158 0.00 0.00 0.00 3.06
5742 6470 1.607628 GACGATGCCTATACGAGTGGT 59.392 52.381 0.00 0.00 0.00 4.16
5763 6491 1.221840 GCTCGAATGGGCCAGAGAA 59.778 57.895 21.72 3.71 32.84 2.87
5782 6510 6.985645 CAGAGAAGATGGTTTCAAGGAGATAG 59.014 42.308 0.00 0.00 0.00 2.08
5790 6518 2.550277 TCAAGGAGATAGGCAGGTCA 57.450 50.000 0.00 0.00 0.00 4.02
5847 6575 0.319555 TGAACTTCCTGGAAGACGCG 60.320 55.000 36.38 15.89 41.71 6.01
5852 6580 2.357517 CCTGGAAGACGCGCTTGT 60.358 61.111 18.16 0.00 36.83 3.16
5872 6600 3.505680 TGTGTCCGGATTCAAATTTGAGG 59.494 43.478 19.64 17.07 38.61 3.86
5879 6607 2.286365 TTCAAATTTGAGGGCCGAGT 57.714 45.000 19.64 0.00 38.61 4.18
5880 6608 2.286365 TCAAATTTGAGGGCCGAGTT 57.714 45.000 16.91 0.00 32.50 3.01
6075 6803 3.417275 CTACTCGTGCCTGCTCGGG 62.417 68.421 11.50 11.50 39.06 5.14
6138 6866 2.165167 TGCAGCTGAAATCTTTCCAGG 58.835 47.619 20.43 0.00 36.36 4.45
6213 6946 3.406764 ACAGAACACAAGAAGATCCTGC 58.593 45.455 0.00 0.00 0.00 4.85
6217 6950 1.072806 ACACAAGAAGATCCTGCTGCA 59.927 47.619 0.88 0.88 0.00 4.41
6277 7014 4.445452 ACAAAATAACGTAGGAGCGAGA 57.555 40.909 0.00 0.00 35.59 4.04
6278 7015 4.421948 ACAAAATAACGTAGGAGCGAGAG 58.578 43.478 0.00 0.00 35.59 3.20
6300 7037 6.786959 AGAGGATTGAGAGATGTAAATAGCCT 59.213 38.462 0.00 0.00 0.00 4.58
6336 7073 6.400422 CCGTTAAGTTATTCGTTCGATCTTG 58.600 40.000 0.00 0.00 0.00 3.02
6369 7106 2.797156 CTGTCTCGTGTTCCTTGTGAAG 59.203 50.000 0.00 0.00 32.37 3.02
6388 7140 0.667792 GTCTTCAGTCGTGTCTGGCC 60.668 60.000 0.00 0.00 36.25 5.36
6389 7141 1.112916 TCTTCAGTCGTGTCTGGCCA 61.113 55.000 4.71 4.71 36.25 5.36
6390 7142 0.668706 CTTCAGTCGTGTCTGGCCAG 60.669 60.000 27.87 27.87 36.25 4.85
6391 7143 2.715532 TTCAGTCGTGTCTGGCCAGC 62.716 60.000 28.91 22.24 36.25 4.85
6431 7184 4.997395 TGTTTGCACTTGCCTAAAACAAAA 59.003 33.333 13.14 0.00 39.69 2.44
6432 7185 5.645497 TGTTTGCACTTGCCTAAAACAAAAT 59.355 32.000 13.14 0.00 39.69 1.82
6433 7186 6.150140 TGTTTGCACTTGCCTAAAACAAAATT 59.850 30.769 13.14 0.00 39.69 1.82
6434 7187 5.731599 TGCACTTGCCTAAAACAAAATTG 57.268 34.783 0.00 0.00 41.18 2.32
6435 7188 4.034975 TGCACTTGCCTAAAACAAAATTGC 59.965 37.500 0.00 0.00 41.18 3.56
6488 7241 2.551887 TGCGGCGCAAAACATATCATAT 59.448 40.909 34.58 0.00 34.76 1.78
6497 7250 6.532311 GCAAAACATATCATATCAGCTCTCG 58.468 40.000 0.00 0.00 0.00 4.04
6513 7266 3.454375 CTCTCGTTTGTAAGGTGTGTGT 58.546 45.455 0.00 0.00 0.00 3.72
6522 7275 0.550914 AAGGTGTGTGTGTGGTGGAT 59.449 50.000 0.00 0.00 0.00 3.41
6523 7276 0.179020 AGGTGTGTGTGTGGTGGATG 60.179 55.000 0.00 0.00 0.00 3.51
6524 7277 1.172180 GGTGTGTGTGTGGTGGATGG 61.172 60.000 0.00 0.00 0.00 3.51
6525 7278 0.179032 GTGTGTGTGTGGTGGATGGA 60.179 55.000 0.00 0.00 0.00 3.41
6526 7279 0.548510 TGTGTGTGTGGTGGATGGAA 59.451 50.000 0.00 0.00 0.00 3.53
6527 7280 1.238439 GTGTGTGTGGTGGATGGAAG 58.762 55.000 0.00 0.00 0.00 3.46
6528 7281 1.135960 TGTGTGTGGTGGATGGAAGA 58.864 50.000 0.00 0.00 0.00 2.87
6529 7282 1.704628 TGTGTGTGGTGGATGGAAGAT 59.295 47.619 0.00 0.00 0.00 2.40
6530 7283 2.290260 TGTGTGTGGTGGATGGAAGATC 60.290 50.000 0.00 0.00 0.00 2.75
6531 7284 1.281867 TGTGTGGTGGATGGAAGATCC 59.718 52.381 0.00 0.00 38.66 3.36
6542 7295 3.757947 TGGAAGATCCACCAGTAGAGA 57.242 47.619 4.61 0.00 42.67 3.10
6543 7296 4.271807 TGGAAGATCCACCAGTAGAGAT 57.728 45.455 4.61 0.00 42.67 2.75
6605 7358 7.201496 CCTTGCAATAAAGAGCATTTTGATGTC 60.201 37.037 0.00 0.00 40.94 3.06
6647 7400 8.746052 TGTATAGCTGTGCTGGTATTTTTAAT 57.254 30.769 0.00 0.00 40.10 1.40
6651 7404 5.065988 AGCTGTGCTGGTATTTTTAATACCG 59.934 40.000 18.69 15.16 45.32 4.02
6655 7408 3.242804 GCTGGTATTTTTAATACCGCGCA 60.243 43.478 23.36 9.99 45.32 6.09
6660 7413 4.624336 ATTTTTAATACCGCGCATGTCA 57.376 36.364 8.75 0.00 0.00 3.58
6665 7418 1.083806 ATACCGCGCATGTCAGTGTG 61.084 55.000 8.75 0.00 0.00 3.82
6670 7423 1.291184 GCGCATGTCAGTGTGTGCTA 61.291 55.000 0.30 0.00 45.64 3.49
6675 7428 3.873361 GCATGTCAGTGTGTGCTACATAT 59.127 43.478 0.00 0.00 42.24 1.78
6713 7466 5.491982 AGAAAGTTCAGTGTGAAGACTGTT 58.508 37.500 7.40 0.00 43.38 3.16
6724 7477 2.752354 TGAAGACTGTTGGTGTTTGTGG 59.248 45.455 0.00 0.00 31.28 4.17
6776 7532 1.301479 GGCCAAACGGACGTTCTCT 60.301 57.895 10.76 0.00 37.35 3.10
6780 7536 1.337823 CCAAACGGACGTTCTCTGGAT 60.338 52.381 17.39 0.00 37.35 3.41
6784 7540 1.067776 ACGGACGTTCTCTGGATGTTC 60.068 52.381 0.00 0.00 0.00 3.18
6793 7549 5.751028 CGTTCTCTGGATGTTCCTCTTTATC 59.249 44.000 0.00 0.00 37.46 1.75
6794 7550 5.878406 TCTCTGGATGTTCCTCTTTATCC 57.122 43.478 0.00 0.00 37.46 2.59
6809 7567 4.635765 TCTTTATCCGCTGGAGAAACAATG 59.364 41.667 11.58 5.01 37.89 2.82
6856 7614 2.785868 AGCTTATTTGCTGCTCCCG 58.214 52.632 0.00 0.00 42.33 5.14
6858 7616 1.032114 GCTTATTTGCTGCTCCCGGT 61.032 55.000 0.00 0.00 0.00 5.28
6859 7617 1.745827 GCTTATTTGCTGCTCCCGGTA 60.746 52.381 0.00 0.00 0.00 4.02
6860 7618 1.940613 CTTATTTGCTGCTCCCGGTAC 59.059 52.381 0.00 0.00 0.00 3.34
6869 7628 1.134220 TGCTCCCGGTACCATGAAATC 60.134 52.381 13.54 0.92 0.00 2.17
6907 7666 3.225104 GCTCCCATGCTCCAATTTATCA 58.775 45.455 0.00 0.00 0.00 2.15
6912 7671 6.584488 TCCCATGCTCCAATTTATCAAAATG 58.416 36.000 0.00 0.00 35.46 2.32
6957 7716 9.581099 AATATTCCGAAACAAATTGTACAATCC 57.419 29.630 21.02 6.34 0.00 3.01
6963 7722 7.868415 CCGAAACAAATTGTACAATCCCTAAAA 59.132 33.333 21.02 0.00 0.00 1.52
6964 7723 9.250624 CGAAACAAATTGTACAATCCCTAAAAA 57.749 29.630 21.02 0.00 0.00 1.94
7046 7805 8.687824 AATAGTGTCACAAAAAGACAAAAGTG 57.312 30.769 5.62 0.00 46.50 3.16
7056 7815 3.859411 AGACAAAAGTGAAAACGCCAA 57.141 38.095 0.00 0.00 0.00 4.52
7057 7816 4.385358 AGACAAAAGTGAAAACGCCAAT 57.615 36.364 0.00 0.00 0.00 3.16
7073 7832 6.169557 ACGCCAATATTTACATCAGGACTA 57.830 37.500 0.00 0.00 0.00 2.59
7239 7998 1.683917 CGATAGGCTAGTGGACAAGCT 59.316 52.381 0.00 0.00 38.80 3.74
7241 8000 2.231716 TAGGCTAGTGGACAAGCTCA 57.768 50.000 0.00 0.00 38.80 4.26
7268 8027 2.848302 GCGCTTTTGCTGATGTATGTTC 59.152 45.455 0.00 0.00 44.80 3.18
7277 8036 6.164408 TGCTGATGTATGTTCGTTAGTTTG 57.836 37.500 0.00 0.00 0.00 2.93
7453 8213 6.768029 TTTTCATGCAGTGTAAGAAAATGC 57.232 33.333 16.90 0.00 34.40 3.56
7462 8222 3.664025 GTGTAAGAAAATGCTCGCACAAC 59.336 43.478 0.00 0.00 0.00 3.32
7472 8232 4.461992 TGCTCGCACAACTACTAAAAAC 57.538 40.909 0.00 0.00 0.00 2.43
7473 8233 3.872182 TGCTCGCACAACTACTAAAAACA 59.128 39.130 0.00 0.00 0.00 2.83
7474 8234 4.513692 TGCTCGCACAACTACTAAAAACAT 59.486 37.500 0.00 0.00 0.00 2.71
7476 8236 6.203145 TGCTCGCACAACTACTAAAAACATTA 59.797 34.615 0.00 0.00 0.00 1.90
7477 8237 7.094975 TGCTCGCACAACTACTAAAAACATTAT 60.095 33.333 0.00 0.00 0.00 1.28
7478 8238 8.385111 GCTCGCACAACTACTAAAAACATTATA 58.615 33.333 0.00 0.00 0.00 0.98
7581 8341 8.867935 TGTTCATACAATGCCAAATAATTTTCG 58.132 29.630 0.00 0.00 0.00 3.46
7582 8342 8.868916 GTTCATACAATGCCAAATAATTTTCGT 58.131 29.630 0.00 0.00 0.00 3.85
7583 8343 8.404889 TCATACAATGCCAAATAATTTTCGTG 57.595 30.769 0.00 0.00 0.00 4.35
7584 8344 5.529014 ACAATGCCAAATAATTTTCGTGC 57.471 34.783 0.00 0.00 0.00 5.34
7585 8345 4.993584 ACAATGCCAAATAATTTTCGTGCA 59.006 33.333 0.00 0.00 0.00 4.57
7586 8346 5.642919 ACAATGCCAAATAATTTTCGTGCAT 59.357 32.000 0.00 0.00 39.68 3.96
7587 8347 5.971895 ATGCCAAATAATTTTCGTGCATC 57.028 34.783 0.00 0.00 33.21 3.91
7588 8348 5.070770 TGCCAAATAATTTTCGTGCATCT 57.929 34.783 0.00 0.00 0.00 2.90
7589 8349 6.201226 TGCCAAATAATTTTCGTGCATCTA 57.799 33.333 0.00 0.00 0.00 1.98
7590 8350 6.264832 TGCCAAATAATTTTCGTGCATCTAG 58.735 36.000 0.00 0.00 0.00 2.43
7591 8351 6.094742 TGCCAAATAATTTTCGTGCATCTAGA 59.905 34.615 0.00 0.00 0.00 2.43
7592 8352 6.972328 GCCAAATAATTTTCGTGCATCTAGAA 59.028 34.615 0.00 0.00 0.00 2.10
7593 8353 7.487829 GCCAAATAATTTTCGTGCATCTAGAAA 59.512 33.333 0.00 0.00 32.76 2.52
7594 8354 9.352784 CCAAATAATTTTCGTGCATCTAGAAAA 57.647 29.630 17.89 17.89 44.55 2.29
7597 8357 9.906660 AATAATTTTCGTGCATCTAGAAAAACA 57.093 25.926 18.83 13.04 43.94 2.83
7598 8358 7.858052 AATTTTCGTGCATCTAGAAAAACAG 57.142 32.000 18.83 0.00 43.94 3.16
7599 8359 6.371809 TTTTCGTGCATCTAGAAAAACAGT 57.628 33.333 15.13 0.00 39.83 3.55
7600 8360 4.990543 TCGTGCATCTAGAAAAACAGTG 57.009 40.909 0.00 0.00 0.00 3.66
7601 8361 4.377021 TCGTGCATCTAGAAAAACAGTGT 58.623 39.130 0.00 0.00 0.00 3.55
7602 8362 4.447724 TCGTGCATCTAGAAAAACAGTGTC 59.552 41.667 0.00 0.00 0.00 3.67
7603 8363 4.211164 CGTGCATCTAGAAAAACAGTGTCA 59.789 41.667 0.00 0.00 0.00 3.58
7604 8364 5.444122 GTGCATCTAGAAAAACAGTGTCAC 58.556 41.667 0.00 0.00 0.00 3.67
7605 8365 5.237344 GTGCATCTAGAAAAACAGTGTCACT 59.763 40.000 0.00 0.00 0.00 3.41
7606 8366 6.423905 GTGCATCTAGAAAAACAGTGTCACTA 59.576 38.462 4.85 0.00 0.00 2.74
7607 8367 6.989759 TGCATCTAGAAAAACAGTGTCACTAA 59.010 34.615 4.85 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.743928 CCGTCTTCCTGCCACTGC 60.744 66.667 0.00 0.00 38.26 4.40
3 4 1.669115 CACCGTCTTCCTGCCACTG 60.669 63.158 0.00 0.00 0.00 3.66
4 5 2.743718 CACCGTCTTCCTGCCACT 59.256 61.111 0.00 0.00 0.00 4.00
5 6 2.185310 ATCCACCGTCTTCCTGCCAC 62.185 60.000 0.00 0.00 0.00 5.01
6 7 1.918293 ATCCACCGTCTTCCTGCCA 60.918 57.895 0.00 0.00 0.00 4.92
7 8 1.450312 CATCCACCGTCTTCCTGCC 60.450 63.158 0.00 0.00 0.00 4.85
8 9 1.450312 CCATCCACCGTCTTCCTGC 60.450 63.158 0.00 0.00 0.00 4.85
11 12 0.976073 TCCTCCATCCACCGTCTTCC 60.976 60.000 0.00 0.00 0.00 3.46
20 21 1.337384 CCCATGTCGTCCTCCATCCA 61.337 60.000 0.00 0.00 0.00 3.41
21 22 1.447643 CCCATGTCGTCCTCCATCC 59.552 63.158 0.00 0.00 0.00 3.51
34 35 2.390599 CGACGTCCACAAGCCCATG 61.391 63.158 10.58 0.00 0.00 3.66
36 37 4.308458 CCGACGTCCACAAGCCCA 62.308 66.667 10.58 0.00 0.00 5.36
114 115 2.428491 ACACGGCGGATTTTCATTACA 58.572 42.857 13.24 0.00 0.00 2.41
121 122 2.814919 TCATACAAACACGGCGGATTTT 59.185 40.909 13.24 4.22 0.00 1.82
151 152 5.155643 TCAGATGAAATTCATGCAAACACG 58.844 37.500 13.82 0.00 37.20 4.49
193 195 1.663695 ACGCTAGCCGCATACATTTT 58.336 45.000 9.66 0.00 41.76 1.82
201 203 2.511373 CATCCAACGCTAGCCGCA 60.511 61.111 9.66 0.00 41.76 5.69
230 232 3.189921 CGTCCACGGACACGGATA 58.810 61.111 16.23 0.00 44.77 2.59
246 254 2.287915 CCATTCGCAAATAGGAGAACCG 59.712 50.000 0.00 0.00 41.83 4.44
248 256 4.555511 GCATCCATTCGCAAATAGGAGAAC 60.556 45.833 0.00 0.00 30.62 3.01
250 258 3.141398 GCATCCATTCGCAAATAGGAGA 58.859 45.455 0.00 0.00 30.62 3.71
251 259 2.880268 TGCATCCATTCGCAAATAGGAG 59.120 45.455 0.00 0.00 34.59 3.69
252 260 2.929641 TGCATCCATTCGCAAATAGGA 58.070 42.857 0.00 0.00 34.59 2.94
256 264 5.518848 TTCTTATGCATCCATTCGCAAAT 57.481 34.783 0.19 0.00 42.37 2.32
258 266 4.979943 TTTCTTATGCATCCATTCGCAA 57.020 36.364 0.19 0.00 42.37 4.85
259 267 4.979943 TTTTCTTATGCATCCATTCGCA 57.020 36.364 0.19 0.00 43.45 5.10
261 269 6.560799 CGCAAATTTTCTTATGCATCCATTCG 60.561 38.462 0.19 0.00 38.69 3.34
263 271 6.339730 TCGCAAATTTTCTTATGCATCCATT 58.660 32.000 0.19 0.00 38.69 3.16
265 273 5.105797 ACTCGCAAATTTTCTTATGCATCCA 60.106 36.000 0.19 0.00 38.69 3.41
270 278 5.227184 CGGTAACTCGCAAATTTTCTTATGC 59.773 40.000 0.00 0.00 35.49 3.14
272 280 6.490566 ACGGTAACTCGCAAATTTTCTTAT 57.509 33.333 0.00 0.00 0.00 1.73
273 281 5.927954 ACGGTAACTCGCAAATTTTCTTA 57.072 34.783 0.00 0.00 0.00 2.10
274 282 4.823790 ACGGTAACTCGCAAATTTTCTT 57.176 36.364 0.00 0.00 0.00 2.52
276 284 5.919196 TCTAACGGTAACTCGCAAATTTTC 58.081 37.500 0.00 0.00 0.00 2.29
277 285 5.697633 TCTCTAACGGTAACTCGCAAATTTT 59.302 36.000 0.00 0.00 0.00 1.82
286 294 2.694109 AGGGCATCTCTAACGGTAACTC 59.306 50.000 0.00 0.00 0.00 3.01
287 295 2.748388 AGGGCATCTCTAACGGTAACT 58.252 47.619 0.00 0.00 0.00 2.24
291 299 1.761198 GGTAAGGGCATCTCTAACGGT 59.239 52.381 0.00 0.00 0.00 4.83
297 305 1.115467 CTGACGGTAAGGGCATCTCT 58.885 55.000 0.00 0.00 0.00 3.10
300 308 2.547826 GTAACTGACGGTAAGGGCATC 58.452 52.381 0.00 0.00 0.00 3.91
304 312 3.405823 TTTGGTAACTGACGGTAAGGG 57.594 47.619 0.00 0.00 37.61 3.95
312 320 2.540157 GCACCGTGTTTTGGTAACTGAC 60.540 50.000 0.00 0.00 37.72 3.51
313 321 1.671845 GCACCGTGTTTTGGTAACTGA 59.328 47.619 0.00 0.00 37.72 3.41
315 323 1.752683 TGCACCGTGTTTTGGTAACT 58.247 45.000 0.00 0.00 37.72 2.24
316 324 2.097791 TCTTGCACCGTGTTTTGGTAAC 59.902 45.455 0.00 0.00 37.72 2.50
317 325 2.356382 CTCTTGCACCGTGTTTTGGTAA 59.644 45.455 0.00 0.00 37.72 2.85
319 327 0.738389 CTCTTGCACCGTGTTTTGGT 59.262 50.000 0.00 0.00 41.47 3.67
320 328 0.594796 GCTCTTGCACCGTGTTTTGG 60.595 55.000 0.00 0.00 39.41 3.28
329 339 2.284190 GATTAGTCCTGCTCTTGCACC 58.716 52.381 0.00 0.00 45.31 5.01
352 362 0.178998 CAGGCAAGCATGATAGGGCT 60.179 55.000 0.00 5.90 43.46 5.19
362 372 2.195411 TTGGAGTGCAGGCAAGCA 59.805 55.556 0.00 0.22 43.35 3.91
364 374 2.270986 GGGTTGGAGTGCAGGCAAG 61.271 63.158 0.00 0.00 0.00 4.01
370 380 2.904866 GCGTTGGGTTGGAGTGCA 60.905 61.111 0.00 0.00 0.00 4.57
380 390 2.126502 GTTTGCCATCGCGTTGGG 60.127 61.111 31.52 20.46 37.24 4.12
394 404 2.639327 GGGCCATGCGAGCAAGTTT 61.639 57.895 4.39 0.00 0.00 2.66
406 416 1.270839 CGATTATCCGACAAGGGCCAT 60.271 52.381 6.18 0.00 41.52 4.40
409 419 0.391597 TCCGATTATCCGACAAGGGC 59.608 55.000 0.00 0.00 41.52 5.19
410 420 1.605712 GCTCCGATTATCCGACAAGGG 60.606 57.143 0.00 0.00 41.52 3.95
413 423 4.674362 CGATATGCTCCGATTATCCGACAA 60.674 45.833 0.00 0.00 0.00 3.18
414 424 3.181500 CGATATGCTCCGATTATCCGACA 60.181 47.826 0.00 0.00 0.00 4.35
415 425 3.364062 CGATATGCTCCGATTATCCGAC 58.636 50.000 0.00 0.00 0.00 4.79
416 426 2.223502 GCGATATGCTCCGATTATCCGA 60.224 50.000 0.00 0.00 41.73 4.55
417 427 2.120232 GCGATATGCTCCGATTATCCG 58.880 52.381 0.00 0.00 41.73 4.18
419 429 2.784380 GTCGCGATATGCTCCGATTATC 59.216 50.000 14.06 0.00 43.27 1.75
420 430 2.791503 CGTCGCGATATGCTCCGATTAT 60.792 50.000 14.06 0.00 43.27 1.28
430 637 0.436150 CAGCCATTCGTCGCGATATG 59.564 55.000 14.06 16.00 35.23 1.78
438 645 0.723981 GCTCTGTTCAGCCATTCGTC 59.276 55.000 0.00 0.00 32.76 4.20
471 678 0.319040 CCTCCACTGATGATACCGCG 60.319 60.000 0.00 0.00 0.00 6.46
474 681 3.574826 GGTAGACCTCCACTGATGATACC 59.425 52.174 0.00 0.00 0.00 2.73
476 683 4.536295 TGGTAGACCTCCACTGATGATA 57.464 45.455 0.00 0.00 36.82 2.15
487 742 4.602340 TTCTGTTTCTGTGGTAGACCTC 57.398 45.455 0.00 0.00 34.43 3.85
493 748 3.249799 CGCATGTTTCTGTTTCTGTGGTA 59.750 43.478 0.00 0.00 0.00 3.25
497 752 2.033299 CCACGCATGTTTCTGTTTCTGT 59.967 45.455 0.00 0.00 0.00 3.41
498 753 2.653890 CCACGCATGTTTCTGTTTCTG 58.346 47.619 0.00 0.00 0.00 3.02
499 754 1.001378 GCCACGCATGTTTCTGTTTCT 60.001 47.619 0.00 0.00 0.00 2.52
500 755 1.408422 GCCACGCATGTTTCTGTTTC 58.592 50.000 0.00 0.00 0.00 2.78
501 756 0.317770 CGCCACGCATGTTTCTGTTT 60.318 50.000 0.00 0.00 0.00 2.83
502 757 1.282570 CGCCACGCATGTTTCTGTT 59.717 52.632 0.00 0.00 0.00 3.16
539 794 0.899717 TGCCCCAGCTAGCTTTTTGG 60.900 55.000 16.46 14.20 40.80 3.28
540 795 0.529378 CTGCCCCAGCTAGCTTTTTG 59.471 55.000 16.46 4.40 40.80 2.44
542 797 0.034670 CTCTGCCCCAGCTAGCTTTT 60.035 55.000 16.46 0.00 40.80 2.27
544 799 3.041469 GCTCTGCCCCAGCTAGCTT 62.041 63.158 16.46 0.00 42.18 3.74
545 800 3.478274 GCTCTGCCCCAGCTAGCT 61.478 66.667 12.68 12.68 42.18 3.32
546 801 4.560743 GGCTCTGCCCCAGCTAGC 62.561 72.222 6.62 6.62 44.06 3.42
556 811 4.527583 CTCCCTCGCTGGCTCTGC 62.528 72.222 0.00 0.00 0.00 4.26
557 812 2.757508 TCTCCCTCGCTGGCTCTG 60.758 66.667 0.00 0.00 0.00 3.35
558 813 2.441901 CTCTCCCTCGCTGGCTCT 60.442 66.667 0.00 0.00 0.00 4.09
559 814 3.535962 CCTCTCCCTCGCTGGCTC 61.536 72.222 0.00 0.00 0.00 4.70
560 815 4.067512 TCCTCTCCCTCGCTGGCT 62.068 66.667 0.00 0.00 0.00 4.75
561 816 2.912987 TACTCCTCTCCCTCGCTGGC 62.913 65.000 0.00 0.00 0.00 4.85
562 817 0.821711 CTACTCCTCTCCCTCGCTGG 60.822 65.000 0.00 0.00 0.00 4.85
572 827 4.165372 AGAGAACGATTCCTCTACTCCTCT 59.835 45.833 0.00 0.00 37.94 3.69
579 834 3.297736 GGGGAAGAGAACGATTCCTCTA 58.702 50.000 4.14 0.00 41.98 2.43
600 855 1.312815 GATGAGGGGATTGCCGAAAG 58.687 55.000 0.00 0.00 33.83 2.62
602 857 1.531748 GGATGAGGGGATTGCCGAA 59.468 57.895 0.00 0.00 33.83 4.30
603 858 2.452064 GGGATGAGGGGATTGCCGA 61.452 63.158 0.00 0.00 33.83 5.54
604 859 2.113986 GGGATGAGGGGATTGCCG 59.886 66.667 0.00 0.00 33.83 5.69
605 860 2.523016 GGGGATGAGGGGATTGCC 59.477 66.667 0.00 0.00 0.00 4.52
606 861 2.113986 CGGGGATGAGGGGATTGC 59.886 66.667 0.00 0.00 0.00 3.56
607 862 1.149174 CACGGGGATGAGGGGATTG 59.851 63.158 0.00 0.00 0.00 2.67
608 863 2.757124 GCACGGGGATGAGGGGATT 61.757 63.158 0.00 0.00 0.00 3.01
609 864 3.171388 GCACGGGGATGAGGGGAT 61.171 66.667 0.00 0.00 0.00 3.85
626 881 1.165907 TGTCTTGGTCTTTGCCTGCG 61.166 55.000 0.00 0.00 0.00 5.18
890 1220 1.675801 TGGAGCAGCCAGAAGAGTG 59.324 57.895 0.00 0.00 43.33 3.51
932 1280 2.223829 CGTTCTCCTATGAATGCTCCGT 60.224 50.000 0.00 0.00 0.00 4.69
944 1294 2.778270 TCAGGATCTCCTCGTTCTCCTA 59.222 50.000 0.00 0.00 46.65 2.94
947 1297 1.332375 CGTCAGGATCTCCTCGTTCTC 59.668 57.143 0.00 0.00 46.65 2.87
955 1305 2.159043 TCTGAATTGCGTCAGGATCTCC 60.159 50.000 10.84 0.00 44.40 3.71
959 1309 1.833630 TCCTCTGAATTGCGTCAGGAT 59.166 47.619 10.84 0.00 44.40 3.24
960 1310 1.266178 TCCTCTGAATTGCGTCAGGA 58.734 50.000 10.84 1.68 44.40 3.86
961 1311 2.005451 CTTCCTCTGAATTGCGTCAGG 58.995 52.381 10.84 3.78 44.40 3.86
963 1313 3.329386 CTTCTTCCTCTGAATTGCGTCA 58.671 45.455 0.00 0.00 0.00 4.35
964 1314 2.675348 CCTTCTTCCTCTGAATTGCGTC 59.325 50.000 0.00 0.00 0.00 5.19
966 1316 1.399791 GCCTTCTTCCTCTGAATTGCG 59.600 52.381 0.00 0.00 0.00 4.85
999 1377 2.824071 AATGGTACCGCGACGTCACC 62.824 60.000 17.16 15.14 32.08 4.02
1025 1423 1.938814 CGTGTGCGCACAAACCTTG 60.939 57.895 42.04 23.39 45.50 3.61
1036 1434 2.236690 GTGTACTGTACTACGTGTGCG 58.763 52.381 17.98 0.00 44.93 5.34
1043 1441 1.063174 CGCTCCGGTGTACTGTACTAC 59.937 57.143 17.98 13.59 0.00 2.73
1066 1470 0.521242 CGGCAAAGCTCGTAACATGC 60.521 55.000 0.00 0.00 0.00 4.06
1137 1647 4.934942 TGACACACACGCCGTCGG 62.935 66.667 6.99 6.99 40.69 4.79
1138 1648 3.394874 CTGACACACACGCCGTCG 61.395 66.667 0.00 0.00 42.43 5.12
1139 1649 3.036084 CCTGACACACACGCCGTC 61.036 66.667 0.00 0.00 0.00 4.79
1143 1653 3.349006 CTGGCCTGACACACACGC 61.349 66.667 3.32 0.00 0.00 5.34
1145 1655 2.281761 CCCTGGCCTGACACACAC 60.282 66.667 11.88 0.00 0.00 3.82
1146 1656 3.569210 CCCCTGGCCTGACACACA 61.569 66.667 11.88 0.00 0.00 3.72
1225 1743 1.399714 CGGAATAAAAAGGGGGAGGC 58.600 55.000 0.00 0.00 0.00 4.70
1226 1744 1.399714 GCGGAATAAAAAGGGGGAGG 58.600 55.000 0.00 0.00 0.00 4.30
1227 1745 1.399714 GGCGGAATAAAAAGGGGGAG 58.600 55.000 0.00 0.00 0.00 4.30
1228 1746 0.032912 GGGCGGAATAAAAAGGGGGA 60.033 55.000 0.00 0.00 0.00 4.81
1229 1747 0.032515 AGGGCGGAATAAAAAGGGGG 60.033 55.000 0.00 0.00 0.00 5.40
1230 1748 1.111277 CAGGGCGGAATAAAAAGGGG 58.889 55.000 0.00 0.00 0.00 4.79
1249 1767 1.605971 GAGACGGTTGGACCCTCTCC 61.606 65.000 12.37 0.00 41.57 3.71
1251 1769 0.178929 AAGAGACGGTTGGACCCTCT 60.179 55.000 0.00 0.00 38.15 3.69
1255 1773 1.669211 CGAAGAAGAGACGGTTGGACC 60.669 57.143 0.00 0.00 34.05 4.46
1257 1775 0.038526 GCGAAGAAGAGACGGTTGGA 60.039 55.000 0.00 0.00 0.00 3.53
1354 1875 0.739813 CAGTACCTTTCGGCCTTCGG 60.740 60.000 0.00 0.00 39.77 4.30
1359 1880 1.449778 GGAGCAGTACCTTTCGGCC 60.450 63.158 0.00 0.00 0.00 6.13
1373 1894 0.325203 AGGGGAACAGAGAGAGGAGC 60.325 60.000 0.00 0.00 0.00 4.70
1382 1903 1.229853 GGGAAGGGAGGGGAACAGA 60.230 63.158 0.00 0.00 0.00 3.41
1391 1913 1.208706 GGAGAGGAAAGGGAAGGGAG 58.791 60.000 0.00 0.00 0.00 4.30
1440 1962 0.659957 CAAGGAGCGGCTAATTCTGC 59.340 55.000 0.60 0.00 38.60 4.26
1489 2016 2.750166 TCGAACTCTTGGTCAGCTCTAG 59.250 50.000 0.00 0.00 0.00 2.43
1490 2017 2.791655 TCGAACTCTTGGTCAGCTCTA 58.208 47.619 0.00 0.00 0.00 2.43
1491 2018 1.621992 TCGAACTCTTGGTCAGCTCT 58.378 50.000 0.00 0.00 0.00 4.09
1492 2019 2.440539 TTCGAACTCTTGGTCAGCTC 57.559 50.000 0.00 0.00 0.00 4.09
1518 2066 0.819259 GCAACAACAGAGGAGGCACA 60.819 55.000 0.00 0.00 0.00 4.57
1520 2068 0.250467 GAGCAACAACAGAGGAGGCA 60.250 55.000 0.00 0.00 0.00 4.75
1560 2112 2.032528 CCTGCGGAACCAGCAAGA 59.967 61.111 0.00 0.00 44.67 3.02
1578 2130 2.156098 AGGAGCAAGAACCAGGGCA 61.156 57.895 0.00 0.00 0.00 5.36
1598 2150 4.278513 TTGGCCCCTTGTCCCGTG 62.279 66.667 0.00 0.00 0.00 4.94
1606 2158 2.250924 CACAGAAATTCTTGGCCCCTT 58.749 47.619 0.00 0.00 0.00 3.95
1608 2160 0.897621 CCACAGAAATTCTTGGCCCC 59.102 55.000 0.00 0.00 0.00 5.80
1617 2169 7.826744 ACAAAACATACCAAAACCACAGAAATT 59.173 29.630 0.00 0.00 0.00 1.82
1618 2170 7.334858 ACAAAACATACCAAAACCACAGAAAT 58.665 30.769 0.00 0.00 0.00 2.17
1619 2171 6.702329 ACAAAACATACCAAAACCACAGAAA 58.298 32.000 0.00 0.00 0.00 2.52
1620 2172 6.287589 ACAAAACATACCAAAACCACAGAA 57.712 33.333 0.00 0.00 0.00 3.02
1621 2173 5.923733 ACAAAACATACCAAAACCACAGA 57.076 34.783 0.00 0.00 0.00 3.41
1622 2174 6.674278 GCAAACAAAACATACCAAAACCACAG 60.674 38.462 0.00 0.00 0.00 3.66
1623 2175 5.122396 GCAAACAAAACATACCAAAACCACA 59.878 36.000 0.00 0.00 0.00 4.17
1624 2176 5.352846 AGCAAACAAAACATACCAAAACCAC 59.647 36.000 0.00 0.00 0.00 4.16
1625 2177 5.491982 AGCAAACAAAACATACCAAAACCA 58.508 33.333 0.00 0.00 0.00 3.67
1626 2178 5.582665 TGAGCAAACAAAACATACCAAAACC 59.417 36.000 0.00 0.00 0.00 3.27
1627 2179 6.654793 TGAGCAAACAAAACATACCAAAAC 57.345 33.333 0.00 0.00 0.00 2.43
1628 2180 7.099764 TCTTGAGCAAACAAAACATACCAAAA 58.900 30.769 0.00 0.00 0.00 2.44
1630 2182 6.214191 TCTTGAGCAAACAAAACATACCAA 57.786 33.333 0.00 0.00 0.00 3.67
1689 2252 2.529632 AGGGGGAAGAACAAATTCTGC 58.470 47.619 0.00 0.00 44.82 4.26
1692 2255 3.506398 TCCAAGGGGGAAGAACAAATTC 58.494 45.455 0.00 0.00 44.80 2.17
1703 2266 0.623324 ATCCATTCGTCCAAGGGGGA 60.623 55.000 0.00 0.00 45.89 4.81
1708 2272 5.009010 CCAAAGGATTATCCATTCGTCCAAG 59.991 44.000 14.30 0.00 39.61 3.61
1709 2273 4.887071 CCAAAGGATTATCCATTCGTCCAA 59.113 41.667 14.30 0.00 39.61 3.53
1710 2274 4.460263 CCAAAGGATTATCCATTCGTCCA 58.540 43.478 14.30 0.00 39.61 4.02
1714 2278 2.226437 CCGCCAAAGGATTATCCATTCG 59.774 50.000 14.30 8.41 39.61 3.34
1764 2329 5.123344 CCCGGAAATCACGAAACTAAAATCT 59.877 40.000 0.73 0.00 0.00 2.40
1788 2353 4.525100 AGACGATAAGCTATCCTTCCTTCC 59.475 45.833 0.00 0.00 34.95 3.46
1820 2385 2.676121 TTCACGGCATGCCCTTGG 60.676 61.111 30.79 18.84 33.80 3.61
1823 2388 3.866379 TTGCTTCACGGCATGCCCT 62.866 57.895 30.79 17.25 42.09 5.19
1848 2413 7.345192 CGAATAAATACCCAGAATTGAAGTCG 58.655 38.462 0.00 0.00 0.00 4.18
1869 2434 0.392998 GTGCAGACACATCCCCGAAT 60.393 55.000 0.00 0.00 46.61 3.34
1870 2435 1.003839 GTGCAGACACATCCCCGAA 60.004 57.895 0.00 0.00 46.61 4.30
1911 2482 4.647564 TCCAGGAGAGCAATTTCTTTCT 57.352 40.909 0.00 0.00 0.00 2.52
1912 2483 5.712152 TTTCCAGGAGAGCAATTTCTTTC 57.288 39.130 0.00 0.00 0.00 2.62
1913 2484 6.676990 AATTTCCAGGAGAGCAATTTCTTT 57.323 33.333 0.00 0.00 0.00 2.52
1914 2485 6.379417 CCTAATTTCCAGGAGAGCAATTTCTT 59.621 38.462 2.73 0.00 34.91 2.52
1968 2544 1.668337 CGGCTGACTCTGAAGACACAG 60.668 57.143 0.00 0.00 39.02 3.66
1973 2549 1.270826 CTTGTCGGCTGACTCTGAAGA 59.729 52.381 25.54 1.17 45.70 2.87
2000 2576 3.751175 CAGCGAGACCAAAAACAGGAATA 59.249 43.478 0.00 0.00 0.00 1.75
2001 2577 2.554032 CAGCGAGACCAAAAACAGGAAT 59.446 45.455 0.00 0.00 0.00 3.01
2005 2581 4.378459 GGAATACAGCGAGACCAAAAACAG 60.378 45.833 0.00 0.00 0.00 3.16
2008 2584 3.751175 CAGGAATACAGCGAGACCAAAAA 59.249 43.478 0.00 0.00 0.00 1.94
2009 2585 3.334691 CAGGAATACAGCGAGACCAAAA 58.665 45.455 0.00 0.00 0.00 2.44
2018 2594 1.583054 GTTAGGCCAGGAATACAGCG 58.417 55.000 5.01 0.00 0.00 5.18
2023 2599 1.491668 TGAGCGTTAGGCCAGGAATA 58.508 50.000 5.01 0.00 45.17 1.75
2031 2607 0.533085 GGGAGGAATGAGCGTTAGGC 60.533 60.000 0.00 0.00 44.05 3.93
2060 2659 5.938125 GTGAGACCTAACAAGCCAAGAAATA 59.062 40.000 0.00 0.00 0.00 1.40
2061 2660 4.762251 GTGAGACCTAACAAGCCAAGAAAT 59.238 41.667 0.00 0.00 0.00 2.17
2083 2682 2.378038 TGACTTGAAGCCAGCAAAAGT 58.622 42.857 0.00 4.83 33.91 2.66
2091 2690 3.884895 TCTGTTTCTTGACTTGAAGCCA 58.115 40.909 0.00 0.00 0.00 4.75
2093 2692 7.550906 ACCTATATCTGTTTCTTGACTTGAAGC 59.449 37.037 0.00 0.00 0.00 3.86
2097 2705 7.414540 GCCAACCTATATCTGTTTCTTGACTTG 60.415 40.741 0.00 0.00 0.00 3.16
2119 2727 3.713288 CGTGATTATCGGAGTAAGCCAA 58.287 45.455 0.00 0.00 0.00 4.52
2156 2764 4.044825 TCTTGGCCCCCTAACAAGATTTTA 59.955 41.667 0.00 0.00 43.90 1.52
2174 2783 1.559368 TGCCAATTCCCATGTCTTGG 58.441 50.000 7.92 7.92 46.00 3.61
2175 2784 2.564062 ACTTGCCAATTCCCATGTCTTG 59.436 45.455 0.00 0.00 0.00 3.02
2176 2785 2.893424 ACTTGCCAATTCCCATGTCTT 58.107 42.857 0.00 0.00 0.00 3.01
2192 2803 1.209261 ACCCAAAAGCCACCAAACTTG 59.791 47.619 0.00 0.00 0.00 3.16
2322 2933 4.515567 AGCAAAAGAGAAAAGAAGTACCGG 59.484 41.667 0.00 0.00 0.00 5.28
2323 2934 5.674933 AGCAAAAGAGAAAAGAAGTACCG 57.325 39.130 0.00 0.00 0.00 4.02
2343 2954 6.374613 ACTTTGCTGAAGGTAAAGGTATTAGC 59.625 38.462 10.00 0.00 46.88 3.09
2348 2959 4.349930 AGGACTTTGCTGAAGGTAAAGGTA 59.650 41.667 10.00 0.00 46.88 3.08
2387 2998 6.266786 ACGTCTAATCCCAAAACTTTCCAATT 59.733 34.615 0.00 0.00 0.00 2.32
2391 3002 5.700722 AACGTCTAATCCCAAAACTTTCC 57.299 39.130 0.00 0.00 0.00 3.13
2421 3032 5.009410 ACCTACTACGTACAGCAACATATCC 59.991 44.000 0.00 0.00 0.00 2.59
2433 3044 5.277731 GCCATCAAGAGTACCTACTACGTAC 60.278 48.000 0.00 0.00 36.50 3.67
2434 3045 4.818546 GCCATCAAGAGTACCTACTACGTA 59.181 45.833 0.00 0.00 36.50 3.57
2435 3046 3.631227 GCCATCAAGAGTACCTACTACGT 59.369 47.826 0.00 0.00 36.50 3.57
2436 3047 3.884091 AGCCATCAAGAGTACCTACTACG 59.116 47.826 0.00 0.00 36.50 3.51
2553 3174 2.293399 CCGGACCAAAGAAGAACAAAGG 59.707 50.000 0.00 0.00 0.00 3.11
2554 3175 2.293399 CCCGGACCAAAGAAGAACAAAG 59.707 50.000 0.73 0.00 0.00 2.77
2555 3176 2.303175 CCCGGACCAAAGAAGAACAAA 58.697 47.619 0.73 0.00 0.00 2.83
2556 3177 1.213430 ACCCGGACCAAAGAAGAACAA 59.787 47.619 0.73 0.00 0.00 2.83
2557 3178 0.841289 ACCCGGACCAAAGAAGAACA 59.159 50.000 0.73 0.00 0.00 3.18
2558 3179 1.235724 CACCCGGACCAAAGAAGAAC 58.764 55.000 0.73 0.00 0.00 3.01
2559 3180 0.536460 GCACCCGGACCAAAGAAGAA 60.536 55.000 0.73 0.00 0.00 2.52
2560 3181 1.072505 GCACCCGGACCAAAGAAGA 59.927 57.895 0.73 0.00 0.00 2.87
2561 3182 0.609131 ATGCACCCGGACCAAAGAAG 60.609 55.000 0.73 0.00 0.00 2.85
2562 3183 0.178975 AATGCACCCGGACCAAAGAA 60.179 50.000 0.73 0.00 0.00 2.52
2681 3302 4.935352 AACTGCATTGGACAAAGCTTAA 57.065 36.364 12.61 0.00 36.15 1.85
2715 3336 5.176223 CAGCACAGATTTGGCAACTTTAAAG 59.824 40.000 13.76 13.76 37.61 1.85
2719 3341 2.431782 ACAGCACAGATTTGGCAACTTT 59.568 40.909 0.00 0.00 37.61 2.66
2731 3353 2.176889 GGGAGTACCTAACAGCACAGA 58.823 52.381 0.00 0.00 35.85 3.41
2747 3369 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
2748 3370 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
2749 3371 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
2750 3372 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
2751 3373 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
2753 3375 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
2754 3376 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
2756 3378 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
2757 3379 7.312154 TCCATTTTGATGACAAGTATTTTCGG 58.688 34.615 0.00 0.00 37.32 4.30
2811 3433 9.170890 TGAATAAAAGGGGATGTATCTAGATGT 57.829 33.333 15.79 1.25 0.00 3.06
2817 3439 9.713684 TCAAAATGAATAAAAGGGGATGTATCT 57.286 29.630 0.00 0.00 0.00 1.98
2820 3442 9.486123 TCATCAAAATGAATAAAAGGGGATGTA 57.514 29.630 0.00 0.00 38.97 2.29
2821 3443 8.260114 GTCATCAAAATGAATAAAAGGGGATGT 58.740 33.333 0.00 0.00 43.42 3.06
2822 3444 8.259411 TGTCATCAAAATGAATAAAAGGGGATG 58.741 33.333 0.00 0.00 43.42 3.51
2823 3445 8.378115 TGTCATCAAAATGAATAAAAGGGGAT 57.622 30.769 0.00 0.00 43.42 3.85
2824 3446 7.789202 TGTCATCAAAATGAATAAAAGGGGA 57.211 32.000 0.00 0.00 43.42 4.81
2825 3447 8.096414 ACTTGTCATCAAAATGAATAAAAGGGG 58.904 33.333 0.00 0.00 43.42 4.79
2833 3455 7.975616 CCGGAAATACTTGTCATCAAAATGAAT 59.024 33.333 0.00 0.00 43.42 2.57
2834 3456 7.175816 TCCGGAAATACTTGTCATCAAAATGAA 59.824 33.333 0.00 0.00 43.42 2.57
2835 3457 6.657117 TCCGGAAATACTTGTCATCAAAATGA 59.343 34.615 0.00 0.00 39.63 2.57
2836 3458 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
2837 3459 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
2838 3460 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
2839 3461 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
2840 3462 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
2841 3463 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
2842 3464 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
2843 3465 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
2844 3466 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
2845 3467 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
2846 3468 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
2847 3469 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
2848 3470 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
2849 3471 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
2850 3472 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
2851 3473 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
2852 3474 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
2853 3475 0.682209 CTACTCCCTCCGTCCGGAAA 60.682 60.000 5.23 0.00 44.66 3.13
2854 3476 1.077212 CTACTCCCTCCGTCCGGAA 60.077 63.158 5.23 0.00 44.66 4.30
2855 3477 2.593978 CTACTCCCTCCGTCCGGA 59.406 66.667 0.00 0.00 42.90 5.14
2856 3478 2.518825 CCTACTCCCTCCGTCCGG 60.519 72.222 0.00 0.00 0.00 5.14
2857 3479 1.526455 CTCCTACTCCCTCCGTCCG 60.526 68.421 0.00 0.00 0.00 4.79
2858 3480 1.152715 CCTCCTACTCCCTCCGTCC 60.153 68.421 0.00 0.00 0.00 4.79
2859 3481 0.842635 TACCTCCTACTCCCTCCGTC 59.157 60.000 0.00 0.00 0.00 4.79
2860 3482 1.214923 CTTACCTCCTACTCCCTCCGT 59.785 57.143 0.00 0.00 0.00 4.69
2861 3483 1.984066 CTTACCTCCTACTCCCTCCG 58.016 60.000 0.00 0.00 0.00 4.63
2862 3484 1.218450 AGCTTACCTCCTACTCCCTCC 59.782 57.143 0.00 0.00 0.00 4.30
2863 3485 2.176148 AGAGCTTACCTCCTACTCCCTC 59.824 54.545 0.00 0.00 41.74 4.30
2864 3486 2.219571 AGAGCTTACCTCCTACTCCCT 58.780 52.381 0.00 0.00 41.74 4.20
2865 3487 2.759839 AGAGCTTACCTCCTACTCCC 57.240 55.000 0.00 0.00 41.74 4.30
2866 3488 4.534797 TGTAAGAGCTTACCTCCTACTCC 58.465 47.826 15.58 0.00 43.47 3.85
2867 3489 9.689501 ATATATGTAAGAGCTTACCTCCTACTC 57.310 37.037 15.58 0.00 43.47 2.59
2868 3490 9.469097 CATATATGTAAGAGCTTACCTCCTACT 57.531 37.037 15.58 0.30 43.47 2.57
2869 3491 9.245481 ACATATATGTAAGAGCTTACCTCCTAC 57.755 37.037 16.85 0.00 43.47 3.18
2870 3492 9.824216 AACATATATGTAAGAGCTTACCTCCTA 57.176 33.333 18.56 5.27 43.47 2.94
2871 3493 8.728596 AACATATATGTAAGAGCTTACCTCCT 57.271 34.615 18.56 0.00 43.47 3.69
2872 3494 8.808092 AGAACATATATGTAAGAGCTTACCTCC 58.192 37.037 18.56 0.00 43.47 4.30
2873 3495 9.632807 CAGAACATATATGTAAGAGCTTACCTC 57.367 37.037 18.56 7.99 43.47 3.85
2874 3496 9.368416 TCAGAACATATATGTAAGAGCTTACCT 57.632 33.333 18.56 9.79 43.47 3.08
2875 3497 9.413048 GTCAGAACATATATGTAAGAGCTTACC 57.587 37.037 18.56 1.89 43.47 2.85
2878 3500 8.700051 ACAGTCAGAACATATATGTAAGAGCTT 58.300 33.333 18.56 1.20 40.80 3.74
2879 3501 8.243961 ACAGTCAGAACATATATGTAAGAGCT 57.756 34.615 18.56 11.38 40.80 4.09
3019 3641 6.360618 AGGCTGATTCTAAGTTCTAATTGGG 58.639 40.000 0.00 0.00 0.00 4.12
3079 3701 5.531659 TGAATGCAACATGCCAAAAGAAAAT 59.468 32.000 0.00 0.00 44.23 1.82
3229 3851 5.925969 ACGGCACTGGAAAAATATTCAAAAG 59.074 36.000 0.00 0.00 0.00 2.27
3258 3880 9.050601 AGTTTGACATTTCAAGTGAAAACAAAA 57.949 25.926 22.77 14.54 45.81 2.44
3679 4342 7.881142 TCACTTTGTTGTATAAAGTCCAATGG 58.119 34.615 0.00 0.00 44.20 3.16
3813 4518 6.094742 GCTCTCTTTTCTCTGGGGAAAATAAG 59.905 42.308 8.56 9.31 42.07 1.73
3814 4519 5.946377 GCTCTCTTTTCTCTGGGGAAAATAA 59.054 40.000 8.56 1.27 42.07 1.40
4036 4741 7.307493 TGATAAAGACACATATGTTGAGTGC 57.693 36.000 5.37 0.00 39.95 4.40
4150 4855 1.202818 GCTCTGACCCCAACAAGAACT 60.203 52.381 0.00 0.00 0.00 3.01
4505 5210 1.271108 TGCGCATACCTGAGGTTTTGA 60.271 47.619 10.53 0.00 37.09 2.69
4549 5258 5.120399 AGTTTAGTGTTCCGTTGTTGATCA 58.880 37.500 0.00 0.00 0.00 2.92
4565 5274 7.928706 CAGAGCCACAATATAGCTAAGTTTAGT 59.071 37.037 0.00 0.00 36.87 2.24
4566 5275 8.144478 TCAGAGCCACAATATAGCTAAGTTTAG 58.856 37.037 0.00 0.00 36.87 1.85
4679 5388 2.575735 TCACCAACCATCCTAGATGCAA 59.424 45.455 0.00 0.00 0.00 4.08
4742 5451 6.529220 AGCTAACTTGGCATTATTAGGAGAG 58.471 40.000 12.24 0.00 0.00 3.20
4774 5483 8.662141 TGCGTATTTCCTTATTAACTTCTTGTC 58.338 33.333 0.00 0.00 0.00 3.18
4793 5502 3.206150 CCTGCCACTATTCTTGCGTATT 58.794 45.455 0.00 0.00 0.00 1.89
4937 5646 2.952310 GAGCTTTGGTGGTGAAGTTCTT 59.048 45.455 4.17 0.00 32.46 2.52
4949 5658 1.202818 GGTGAACTCCTGAGCTTTGGT 60.203 52.381 5.95 0.00 0.00 3.67
4982 5691 3.071023 TGATTCTCGGTGGTGAAGTTCTT 59.929 43.478 4.17 0.00 0.00 2.52
5143 5852 5.356882 TTCAGTCCTTCGTTGCAATTTAG 57.643 39.130 0.59 0.00 0.00 1.85
5155 5864 5.555966 AGAAGACCTGAAATTCAGTCCTTC 58.444 41.667 27.86 27.86 42.80 3.46
5191 5900 4.157289 CCCAAGTACTACATACACGACACT 59.843 45.833 0.00 0.00 36.09 3.55
5197 5906 7.713507 TCATAAATGCCCAAGTACTACATACAC 59.286 37.037 0.00 0.00 36.09 2.90
5201 5910 7.283127 CAGTTCATAAATGCCCAAGTACTACAT 59.717 37.037 0.00 0.00 0.00 2.29
5206 5915 4.157656 TGCAGTTCATAAATGCCCAAGTAC 59.842 41.667 9.29 0.00 39.22 2.73
5300 6023 1.369625 CTGACAACGGCCTATTCACC 58.630 55.000 0.00 0.00 0.00 4.02
5311 6034 4.177026 CAATAGTCTTCCTCCTGACAACG 58.823 47.826 0.00 0.00 35.81 4.10
5356 6079 0.326264 CAGCAGTAGCCTCCCTTTGT 59.674 55.000 0.00 0.00 43.56 2.83
5736 6464 1.941325 CCCATTCGAGCTTACCACTC 58.059 55.000 0.00 0.00 0.00 3.51
5742 6470 0.465705 CTCTGGCCCATTCGAGCTTA 59.534 55.000 0.00 0.00 0.00 3.09
5763 6491 3.782523 TGCCTATCTCCTTGAAACCATCT 59.217 43.478 0.00 0.00 0.00 2.90
5782 6510 0.683973 AGATCGATCCATGACCTGCC 59.316 55.000 21.66 0.00 0.00 4.85
5790 6518 4.778213 TTCCCTTTTCAGATCGATCCAT 57.222 40.909 21.66 1.12 0.00 3.41
5847 6575 3.575965 AATTTGAATCCGGACACAAGC 57.424 42.857 6.12 0.00 0.00 4.01
5852 6580 3.088532 CCCTCAAATTTGAATCCGGACA 58.911 45.455 20.82 0.00 36.64 4.02
5872 6600 0.796927 GTGCTGTTCTTAACTCGGCC 59.203 55.000 0.00 0.00 0.00 6.13
5879 6607 3.390135 CGTTCTCTGGTGCTGTTCTTAA 58.610 45.455 0.00 0.00 0.00 1.85
5880 6608 2.288825 CCGTTCTCTGGTGCTGTTCTTA 60.289 50.000 0.00 0.00 0.00 2.10
5982 6710 4.754667 TCGCTCTGCAGCTGCTGG 62.755 66.667 35.85 28.13 44.40 4.85
6093 6821 1.800805 TTCTGCTTTCAAGAGCCGAG 58.199 50.000 0.00 0.00 42.01 4.63
6138 6866 0.250424 AAAAACATGCAAGGCCAGCC 60.250 50.000 16.44 0.00 0.00 4.85
6202 6935 1.632409 TCCTTTGCAGCAGGATCTTCT 59.368 47.619 11.79 0.00 35.34 2.85
6203 6936 2.015587 CTCCTTTGCAGCAGGATCTTC 58.984 52.381 15.32 0.00 39.84 2.87
6204 6937 1.632409 TCTCCTTTGCAGCAGGATCTT 59.368 47.619 15.32 0.00 39.84 2.40
6205 6938 1.283347 TCTCCTTTGCAGCAGGATCT 58.717 50.000 15.32 0.00 39.84 2.75
6213 6946 3.882444 TCATCTCCATTCTCCTTTGCAG 58.118 45.455 0.00 0.00 0.00 4.41
6217 6950 4.581309 TGCTTCATCTCCATTCTCCTTT 57.419 40.909 0.00 0.00 0.00 3.11
6277 7014 6.239829 CCAGGCTATTTACATCTCTCAATCCT 60.240 42.308 0.00 0.00 0.00 3.24
6278 7015 5.936956 CCAGGCTATTTACATCTCTCAATCC 59.063 44.000 0.00 0.00 0.00 3.01
6300 7037 1.134037 ACTTAACGGGCAACTCAACCA 60.134 47.619 0.00 0.00 0.00 3.67
6336 7073 0.110644 CGAGACAGCGCAAAAGGAAC 60.111 55.000 11.47 0.00 0.00 3.62
6369 7106 0.667792 GGCCAGACACGACTGAAGAC 60.668 60.000 0.00 0.00 39.94 3.01
6388 7140 7.675403 GCAAACATTCATCCATTTGTATTGCTG 60.675 37.037 0.00 0.00 35.57 4.41
6389 7141 6.314400 GCAAACATTCATCCATTTGTATTGCT 59.686 34.615 0.00 0.00 35.57 3.91
6390 7142 6.092396 TGCAAACATTCATCCATTTGTATTGC 59.908 34.615 0.00 0.00 37.04 3.56
6391 7143 7.332430 AGTGCAAACATTCATCCATTTGTATTG 59.668 33.333 0.00 0.00 35.06 1.90
6431 7184 3.567164 CAGAGGCTCGAATAATTGGCAAT 59.433 43.478 6.96 6.96 0.00 3.56
6432 7185 2.945008 CAGAGGCTCGAATAATTGGCAA 59.055 45.455 9.22 0.68 0.00 4.52
6433 7186 2.564771 CAGAGGCTCGAATAATTGGCA 58.435 47.619 9.22 0.00 0.00 4.92
6434 7187 1.265365 GCAGAGGCTCGAATAATTGGC 59.735 52.381 9.22 0.00 36.96 4.52
6435 7188 2.289002 GTGCAGAGGCTCGAATAATTGG 59.711 50.000 9.22 0.00 41.91 3.16
6488 7241 2.364324 ACACCTTACAAACGAGAGCTGA 59.636 45.455 0.00 0.00 0.00 4.26
6497 7250 2.750712 ACCACACACACACCTTACAAAC 59.249 45.455 0.00 0.00 0.00 2.93
6513 7266 1.667595 TGGATCTTCCATCCACCACA 58.332 50.000 0.00 0.00 42.67 4.17
6522 7275 3.757947 TCTCTACTGGTGGATCTTCCA 57.242 47.619 8.59 8.59 45.98 3.53
6523 7276 6.926630 ATAATCTCTACTGGTGGATCTTCC 57.073 41.667 0.00 0.00 36.96 3.46
6524 7277 7.957002 TCAATAATCTCTACTGGTGGATCTTC 58.043 38.462 0.00 0.00 0.00 2.87
6525 7278 7.921041 TCAATAATCTCTACTGGTGGATCTT 57.079 36.000 0.00 0.00 0.00 2.40
6526 7279 9.030452 GTATCAATAATCTCTACTGGTGGATCT 57.970 37.037 0.00 0.00 0.00 2.75
6527 7280 9.030452 AGTATCAATAATCTCTACTGGTGGATC 57.970 37.037 0.00 0.00 0.00 3.36
6528 7281 8.964533 AGTATCAATAATCTCTACTGGTGGAT 57.035 34.615 0.00 0.00 0.00 3.41
6529 7282 8.228206 AGAGTATCAATAATCTCTACTGGTGGA 58.772 37.037 0.00 0.00 32.83 4.02
6530 7283 8.415950 AGAGTATCAATAATCTCTACTGGTGG 57.584 38.462 0.00 0.00 32.83 4.61
6531 7284 9.689976 CAAGAGTATCAATAATCTCTACTGGTG 57.310 37.037 0.88 0.00 36.77 4.17
6532 7285 9.427821 ACAAGAGTATCAATAATCTCTACTGGT 57.572 33.333 0.88 0.00 36.77 4.00
6618 7371 6.624352 AATACCAGCACAGCTATACAAATG 57.376 37.500 0.00 0.00 36.40 2.32
6647 7400 1.736282 CACACTGACATGCGCGGTA 60.736 57.895 8.83 0.00 0.00 4.02
6651 7404 1.291184 TAGCACACACTGACATGCGC 61.291 55.000 0.00 0.00 42.98 6.09
6655 7408 5.343307 TCATATGTAGCACACACTGACAT 57.657 39.130 1.90 0.00 40.86 3.06
6660 7413 4.697514 GTCCATCATATGTAGCACACACT 58.302 43.478 1.90 0.00 40.86 3.55
6665 7418 5.402568 CAGTTACGTCCATCATATGTAGCAC 59.597 44.000 1.90 0.00 0.00 4.40
6670 7423 6.465439 TTCTCAGTTACGTCCATCATATGT 57.535 37.500 1.90 0.00 0.00 2.29
6675 7428 4.866508 ACTTTCTCAGTTACGTCCATCA 57.133 40.909 0.00 0.00 27.32 3.07
6724 7477 4.643387 AGGTGCCCGCAGTGGAAC 62.643 66.667 0.00 0.00 42.00 3.62
6776 7532 2.771943 AGCGGATAAAGAGGAACATCCA 59.228 45.455 0.00 0.00 39.61 3.41
6780 7536 2.168521 CTCCAGCGGATAAAGAGGAACA 59.831 50.000 0.00 0.00 0.00 3.18
6784 7540 3.198872 GTTTCTCCAGCGGATAAAGAGG 58.801 50.000 7.89 0.00 30.36 3.69
6793 7549 0.322456 TCCCATTGTTTCTCCAGCGG 60.322 55.000 0.00 0.00 0.00 5.52
6794 7550 1.533625 TTCCCATTGTTTCTCCAGCG 58.466 50.000 0.00 0.00 0.00 5.18
6856 7614 1.766496 TCTCCCCGATTTCATGGTACC 59.234 52.381 4.43 4.43 0.00 3.34
6858 7616 5.546110 TGATATTCTCCCCGATTTCATGGTA 59.454 40.000 0.00 0.00 0.00 3.25
6859 7617 4.350816 TGATATTCTCCCCGATTTCATGGT 59.649 41.667 0.00 0.00 0.00 3.55
6860 7618 4.910195 TGATATTCTCCCCGATTTCATGG 58.090 43.478 0.00 0.00 0.00 3.66
6869 7628 1.001406 GAGCACCTGATATTCTCCCCG 59.999 57.143 0.00 0.00 0.00 5.73
6933 7692 7.394923 AGGGATTGTACAATTTGTTTCGGAATA 59.605 33.333 21.63 0.00 0.00 1.75
7008 7767 7.848223 TGTGACACTATTCATACTGGATTTG 57.152 36.000 7.20 0.00 0.00 2.32
7012 7771 8.154203 TCTTTTTGTGACACTATTCATACTGGA 58.846 33.333 7.20 0.00 0.00 3.86
7046 7805 6.691388 GTCCTGATGTAAATATTGGCGTTTTC 59.309 38.462 0.00 0.00 0.00 2.29
7119 7878 9.920946 AAATACATGAGTGTACAATCCCTAAAT 57.079 29.630 19.78 4.23 43.21 1.40
7218 7977 1.870167 GCTTGTCCACTAGCCTATCGC 60.870 57.143 2.09 0.00 38.48 4.58
7239 7998 1.667830 AGCAAAAGCGCGCTACTGA 60.668 52.632 36.73 0.00 36.50 3.41
7241 8000 1.021390 ATCAGCAAAAGCGCGCTACT 61.021 50.000 36.73 25.15 36.50 2.57
7250 8009 6.831769 ACTAACGAACATACATCAGCAAAAG 58.168 36.000 0.00 0.00 0.00 2.27
7253 8012 6.203915 ACAAACTAACGAACATACATCAGCAA 59.796 34.615 0.00 0.00 0.00 3.91
7555 8315 8.867935 CGAAAATTATTTGGCATTGTATGAACA 58.132 29.630 0.00 0.00 0.00 3.18
7556 8316 8.868916 ACGAAAATTATTTGGCATTGTATGAAC 58.131 29.630 0.00 0.00 0.00 3.18
7557 8317 8.867935 CACGAAAATTATTTGGCATTGTATGAA 58.132 29.630 0.00 0.00 0.00 2.57
7558 8318 7.009999 GCACGAAAATTATTTGGCATTGTATGA 59.990 33.333 0.00 0.00 0.00 2.15
7559 8319 7.118724 GCACGAAAATTATTTGGCATTGTATG 58.881 34.615 0.00 0.00 0.00 2.39
7560 8320 6.815641 TGCACGAAAATTATTTGGCATTGTAT 59.184 30.769 0.00 0.00 0.00 2.29
7561 8321 6.159293 TGCACGAAAATTATTTGGCATTGTA 58.841 32.000 0.00 0.00 0.00 2.41
7562 8322 4.993584 TGCACGAAAATTATTTGGCATTGT 59.006 33.333 0.00 0.00 0.00 2.71
7563 8323 5.527511 TGCACGAAAATTATTTGGCATTG 57.472 34.783 0.00 0.00 0.00 2.82
7564 8324 6.108015 AGATGCACGAAAATTATTTGGCATT 58.892 32.000 15.27 7.57 40.47 3.56
7565 8325 5.663456 AGATGCACGAAAATTATTTGGCAT 58.337 33.333 14.54 14.54 42.80 4.40
7566 8326 5.070770 AGATGCACGAAAATTATTTGGCA 57.929 34.783 0.00 8.29 0.00 4.92
7567 8327 6.494842 TCTAGATGCACGAAAATTATTTGGC 58.505 36.000 0.00 0.00 0.00 4.52
7568 8328 8.909708 TTTCTAGATGCACGAAAATTATTTGG 57.090 30.769 0.00 0.00 0.00 3.28
7571 8331 9.906660 TGTTTTTCTAGATGCACGAAAATTATT 57.093 25.926 12.72 0.00 36.76 1.40
7572 8332 9.559958 CTGTTTTTCTAGATGCACGAAAATTAT 57.440 29.630 12.72 0.00 36.76 1.28
7573 8333 8.564574 ACTGTTTTTCTAGATGCACGAAAATTA 58.435 29.630 12.72 7.07 36.76 1.40
7574 8334 7.379529 CACTGTTTTTCTAGATGCACGAAAATT 59.620 33.333 12.72 0.00 36.76 1.82
7575 8335 6.857964 CACTGTTTTTCTAGATGCACGAAAAT 59.142 34.615 12.72 0.85 36.76 1.82
7576 8336 6.183360 ACACTGTTTTTCTAGATGCACGAAAA 60.183 34.615 0.00 9.58 35.53 2.29
7577 8337 5.295787 ACACTGTTTTTCTAGATGCACGAAA 59.704 36.000 0.00 0.00 0.00 3.46
7578 8338 4.814234 ACACTGTTTTTCTAGATGCACGAA 59.186 37.500 0.00 0.00 0.00 3.85
7579 8339 4.377021 ACACTGTTTTTCTAGATGCACGA 58.623 39.130 0.00 0.00 0.00 4.35
7580 8340 4.211164 TGACACTGTTTTTCTAGATGCACG 59.789 41.667 0.00 0.00 0.00 5.34
7581 8341 5.237344 AGTGACACTGTTTTTCTAGATGCAC 59.763 40.000 7.47 0.80 0.00 4.57
7582 8342 5.368145 AGTGACACTGTTTTTCTAGATGCA 58.632 37.500 7.47 0.00 0.00 3.96
7583 8343 5.931441 AGTGACACTGTTTTTCTAGATGC 57.069 39.130 7.47 0.00 0.00 3.91



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.