Multiple sequence alignment - TraesCS4A01G006700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G006700 chr4A 100.000 5493 0 0 1 5493 4476360 4470868 0.000000e+00 10144.0
1 TraesCS4A01G006700 chr4A 89.300 2327 135 45 1 2254 4242591 4240306 0.000000e+00 2813.0
2 TraesCS4A01G006700 chr4A 90.383 2142 140 25 3131 5219 4239531 4237403 0.000000e+00 2754.0
3 TraesCS4A01G006700 chr4A 93.990 1198 65 4 3198 4393 4194494 4193302 0.000000e+00 1807.0
4 TraesCS4A01G006700 chr4A 86.877 1364 93 35 1088 2382 4157788 4159134 0.000000e+00 1448.0
5 TraesCS4A01G006700 chr4A 88.530 1238 54 26 1067 2227 4196477 4195251 0.000000e+00 1419.0
6 TraesCS4A01G006700 chr4A 93.891 311 11 3 2815 3125 684393101 684393403 3.880000e-126 462.0
7 TraesCS4A01G006700 chr4A 97.328 262 7 0 1730 1991 4005000 4004739 3.900000e-121 446.0
8 TraesCS4A01G006700 chr4A 87.156 218 23 2 3230 3442 4002697 4002480 5.500000e-60 243.0
9 TraesCS4A01G006700 chr4A 82.562 281 25 6 5215 5493 4235863 4235605 5.540000e-55 226.0
10 TraesCS4A01G006700 chr4A 82.700 237 7 16 2252 2455 4240034 4239799 4.370000e-41 180.0
11 TraesCS4A01G006700 chr4A 81.028 253 19 10 2421 2644 4159573 4159825 2.030000e-39 174.0
12 TraesCS4A01G006700 chr4A 88.806 134 14 1 5361 5493 628934664 628934797 4.400000e-36 163.0
13 TraesCS4A01G006700 chr4A 81.651 218 19 10 871 1074 4196744 4196534 1.580000e-35 161.0
14 TraesCS4A01G006700 chr4A 84.568 162 12 1 2449 2610 4239693 4239545 1.230000e-31 148.0
15 TraesCS4A01G006700 chr4A 100.000 47 0 0 2340 2386 4194837 4194791 2.730000e-13 87.9
16 TraesCS4A01G006700 chr4B 87.254 2942 182 68 1 2817 583764452 583767325 0.000000e+00 3177.0
17 TraesCS4A01G006700 chr4B 88.784 2229 189 34 3142 5328 583767356 583769565 0.000000e+00 2675.0
18 TraesCS4A01G006700 chr4B 93.471 1256 59 7 3192 4428 584056168 584057419 0.000000e+00 1844.0
19 TraesCS4A01G006700 chr4B 93.366 1221 58 7 3192 4393 584127527 584128743 0.000000e+00 1784.0
20 TraesCS4A01G006700 chr4B 87.171 1559 96 39 871 2343 584125610 584127150 0.000000e+00 1676.0
21 TraesCS4A01G006700 chr4B 86.993 1553 111 38 871 2343 584054245 584055786 0.000000e+00 1664.0
22 TraesCS4A01G006700 chr4B 93.176 850 49 6 3538 4379 584527794 584526946 0.000000e+00 1240.0
23 TraesCS4A01G006700 chr4B 83.811 908 121 12 4429 5314 584057697 584058600 0.000000e+00 839.0
24 TraesCS4A01G006700 chr4B 92.040 603 36 6 1088 1689 584529935 584529344 0.000000e+00 837.0
25 TraesCS4A01G006700 chr4B 85.610 410 53 6 4906 5312 291802513 291802919 5.090000e-115 425.0
26 TraesCS4A01G006700 chr4B 90.306 196 4 1 2340 2535 584055826 584056006 5.500000e-60 243.0
27 TraesCS4A01G006700 chr4B 90.306 196 4 1 2340 2535 584127190 584127370 5.500000e-60 243.0
28 TraesCS4A01G006700 chr4D 90.828 2355 127 35 1 2314 466291365 466293671 0.000000e+00 3070.0
29 TraesCS4A01G006700 chr4D 92.363 1663 87 16 3192 4830 466335973 466337619 0.000000e+00 2331.0
30 TraesCS4A01G006700 chr4D 90.237 1772 132 25 3192 4938 466294111 466295866 0.000000e+00 2276.0
31 TraesCS4A01G006700 chr4D 93.668 1216 58 7 3193 4393 466405298 466406509 0.000000e+00 1801.0
32 TraesCS4A01G006700 chr4D 87.353 1534 88 39 871 2328 466334087 466335590 0.000000e+00 1661.0
33 TraesCS4A01G006700 chr4D 89.319 1292 68 25 1088 2327 466730916 466729643 0.000000e+00 1557.0
34 TraesCS4A01G006700 chr4D 85.364 1551 77 52 865 2328 466403088 466404575 0.000000e+00 1469.0
35 TraesCS4A01G006700 chr4D 93.602 844 45 5 3545 4379 466728283 466727440 0.000000e+00 1251.0
36 TraesCS4A01G006700 chr4D 86.698 421 52 4 4894 5314 466337618 466338034 1.080000e-126 464.0
37 TraesCS4A01G006700 chr4D 86.339 366 35 7 3131 3494 466728766 466728414 8.630000e-103 385.0
38 TraesCS4A01G006700 chr4D 94.388 196 10 1 2340 2535 466335652 466335846 3.220000e-77 300.0
39 TraesCS4A01G006700 chr4D 83.273 275 14 16 2340 2584 466293738 466294010 1.990000e-54 224.0
40 TraesCS4A01G006700 chr4D 91.489 141 11 1 5354 5493 466296203 466296343 5.620000e-45 193.0
41 TraesCS4A01G006700 chr4D 83.043 230 13 14 2436 2639 466729029 466728800 9.400000e-43 185.0
42 TraesCS4A01G006700 chr4D 96.396 111 4 0 2340 2450 466404894 466405004 3.380000e-42 183.0
43 TraesCS4A01G006700 chr4D 93.478 92 4 2 2449 2540 466405060 466405149 9.600000e-28 135.0
44 TraesCS4A01G006700 chr6A 96.273 322 10 2 2815 3136 491920062 491920381 1.360000e-145 527.0
45 TraesCS4A01G006700 chr6A 88.889 135 14 1 5359 5492 451401197 451401331 1.220000e-36 165.0
46 TraesCS4A01G006700 chr6A 74.803 254 53 11 418 667 442456920 442457166 2.710000e-18 104.0
47 TraesCS4A01G006700 chr3A 96.463 311 11 0 2816 3126 54576400 54576710 1.060000e-141 514.0
48 TraesCS4A01G006700 chr3A 93.651 315 13 3 2812 3126 662393404 662393097 1.080000e-126 464.0
49 TraesCS4A01G006700 chr3A 92.114 317 16 3 2815 3130 467918543 467918851 6.530000e-119 438.0
50 TraesCS4A01G006700 chr5A 95.410 305 12 1 2833 3137 634035820 634036122 8.270000e-133 484.0
51 TraesCS4A01G006700 chr7A 94.516 310 10 2 2816 3125 112480879 112480577 6.440000e-129 472.0
52 TraesCS4A01G006700 chr7A 93.396 318 12 4 2816 3133 674877612 674877304 3.880000e-126 462.0
53 TraesCS4A01G006700 chr1A 87.286 409 50 2 4904 5312 556307231 556306825 3.000000e-127 466.0
54 TraesCS4A01G006700 chr1A 93.770 305 12 2 2816 3120 113901914 113901617 8.390000e-123 451.0
55 TraesCS4A01G006700 chr3D 86.797 409 51 3 4907 5314 592522391 592521985 2.330000e-123 453.0
56 TraesCS4A01G006700 chr6D 86.667 405 53 1 4909 5312 441674790 441674386 1.090000e-121 448.0
57 TraesCS4A01G006700 chr6D 88.235 136 15 1 5359 5493 313882059 313882194 1.580000e-35 161.0
58 TraesCS4A01G006700 chr7D 85.714 406 55 2 4909 5314 507305913 507305511 5.090000e-115 425.0
59 TraesCS4A01G006700 chrUn 85.504 407 51 7 4908 5311 311558492 311558091 8.510000e-113 418.0
60 TraesCS4A01G006700 chrUn 89.630 135 13 1 5360 5493 291833206 291833072 2.630000e-38 171.0
61 TraesCS4A01G006700 chr6B 90.000 130 12 1 5360 5488 608362590 608362719 3.400000e-37 167.0
62 TraesCS4A01G006700 chr5B 89.231 130 13 1 5360 5488 16194702 16194573 1.580000e-35 161.0
63 TraesCS4A01G006700 chr1B 87.500 136 15 2 5359 5493 465980975 465981109 7.370000e-34 156.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G006700 chr4A 4470868 4476360 5492 True 10144.000000 10144 100.00000 1 5493 1 chr4A.!!$R1 5492
1 TraesCS4A01G006700 chr4A 4235605 4242591 6986 True 1224.200000 2813 85.90260 1 5493 5 chr4A.!!$R4 5492
2 TraesCS4A01G006700 chr4A 4193302 4196744 3442 True 868.725000 1807 91.04275 871 4393 4 chr4A.!!$R3 3522
3 TraesCS4A01G006700 chr4A 4157788 4159825 2037 False 811.000000 1448 83.95250 1088 2644 2 chr4A.!!$F3 1556
4 TraesCS4A01G006700 chr4A 4002480 4005000 2520 True 344.500000 446 92.24200 1730 3442 2 chr4A.!!$R2 1712
5 TraesCS4A01G006700 chr4B 583764452 583769565 5113 False 2926.000000 3177 88.01900 1 5328 2 chr4B.!!$F2 5327
6 TraesCS4A01G006700 chr4B 584125610 584128743 3133 False 1234.333333 1784 90.28100 871 4393 3 chr4B.!!$F4 3522
7 TraesCS4A01G006700 chr4B 584054245 584058600 4355 False 1147.500000 1844 88.64525 871 5314 4 chr4B.!!$F3 4443
8 TraesCS4A01G006700 chr4B 584526946 584529935 2989 True 1038.500000 1240 92.60800 1088 4379 2 chr4B.!!$R1 3291
9 TraesCS4A01G006700 chr4D 466291365 466296343 4978 False 1440.750000 3070 88.95675 1 5493 4 chr4D.!!$F1 5492
10 TraesCS4A01G006700 chr4D 466334087 466338034 3947 False 1189.000000 2331 90.20050 871 5314 4 chr4D.!!$F2 4443
11 TraesCS4A01G006700 chr4D 466403088 466406509 3421 False 897.000000 1801 92.22650 865 4393 4 chr4D.!!$F3 3528
12 TraesCS4A01G006700 chr4D 466727440 466730916 3476 True 844.500000 1557 88.07575 1088 4379 4 chr4D.!!$R1 3291

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
746 753 0.763223 AGACCTGGTCACCGGAAACT 60.763 55.0 27.48 1.56 34.60 2.66 F
2647 4491 0.468226 AGGTTGACGCTTGACCTGAA 59.532 50.0 0.00 0.00 42.04 3.02 F
3119 4971 0.035820 AACAACGTGCGGGGTATCAT 60.036 50.0 0.00 0.00 0.00 2.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2718 4562 0.508213 GCAAATGACTGCGTTTTGGC 59.492 50.0 0.00 0.0 31.01 4.52 R
3725 7355 0.250234 CCATGTCGAAGAAGCCCTCA 59.750 55.0 0.00 0.0 39.69 3.86 R
4778 8750 0.325671 CAGGAGGCCTTGAGGGTAGA 60.326 60.0 6.77 0.0 37.43 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 47 1.153086 GATGCTCCGGCCAGACATT 60.153 57.895 2.24 0.00 37.74 2.71
57 59 1.271543 CCAGACATTTCAGCCCTGTCA 60.272 52.381 4.90 0.00 41.34 3.58
115 117 1.529152 CTCAGCCTTGTTGCCATGCA 61.529 55.000 0.00 0.00 36.47 3.96
127 129 1.536174 CCATGCACCACCCCCTTTT 60.536 57.895 0.00 0.00 0.00 2.27
242 244 6.882610 ATGCATGTGTGATTTTATACGGAT 57.117 33.333 0.00 0.00 0.00 4.18
299 304 6.610456 TGTGTGTATGCATAATGTTTGACAG 58.390 36.000 8.28 0.00 0.00 3.51
366 372 3.119029 CCGGGTCATTTTCGTTCTAGGTA 60.119 47.826 0.00 0.00 0.00 3.08
415 421 3.822192 GCACGCCGGAAATTCCCC 61.822 66.667 5.05 0.00 31.13 4.81
507 514 2.416547 CACGAGGGCACATCAAGTTTAG 59.583 50.000 0.00 0.00 0.00 1.85
562 569 6.373216 TCCGTCATAGTTTTTGAAACATAGGG 59.627 38.462 6.35 4.10 0.00 3.53
591 598 3.256558 GGTCGCTCGTACCAAGTTTTAT 58.743 45.455 0.00 0.00 36.96 1.40
652 659 5.642063 GGTTCTGGAATTTACGATTCTGTCA 59.358 40.000 0.00 0.00 0.00 3.58
670 677 2.095567 GTCAGTCGCTCGTACCAAGTTA 60.096 50.000 0.00 0.00 0.00 2.24
715 722 9.617523 AAAGATTTCAAAACTCATCAAAATGGT 57.382 25.926 0.00 0.00 33.42 3.55
746 753 0.763223 AGACCTGGTCACCGGAAACT 60.763 55.000 27.48 1.56 34.60 2.66
796 827 3.457234 GTTTGGTTCAAAAGCCAAGAGG 58.543 45.455 0.00 0.00 44.43 3.69
846 877 2.923634 TACCTCCGACCTAGCTGGCC 62.924 65.000 0.00 0.00 40.22 5.36
912 943 5.399301 CGTTTCCGTACGTTTTCTAAGAGAA 59.601 40.000 15.21 3.46 36.80 2.87
915 946 6.076981 TCCGTACGTTTTCTAAGAGAAACT 57.923 37.500 15.21 0.00 43.25 2.66
1066 1119 1.486310 TCCTACGCCTGCAAGAATCAT 59.514 47.619 0.00 0.00 34.07 2.45
1138 1268 1.114627 CACATCCCTCGATCACCTCA 58.885 55.000 0.00 0.00 0.00 3.86
1426 1581 2.824341 GTTCTCCGACTACTCCTGGAAA 59.176 50.000 0.00 0.00 0.00 3.13
1457 1612 2.580601 CCTTCGTTCCCGACCCACT 61.581 63.158 0.00 0.00 44.13 4.00
1519 1674 1.476891 GACCTCTGGCGTTACATCTCA 59.523 52.381 0.00 0.00 0.00 3.27
1553 1708 2.054021 TGGTGGACATCAAGTTCCTCA 58.946 47.619 0.00 0.00 0.00 3.86
1691 1848 8.097038 AGGTACCATATATACTTTGACATGCTG 58.903 37.037 15.94 0.00 0.00 4.41
1931 2166 2.521708 AAGGCTGTGGTGGTTGGC 60.522 61.111 0.00 0.00 0.00 4.52
2102 2368 6.169094 GCAGAAGGCAGATAAGCTATCATAA 58.831 40.000 0.00 0.00 43.97 1.90
2146 2440 5.738909 AGCAAGTTCACACAGAGCTTATAT 58.261 37.500 0.00 0.00 44.72 0.86
2147 2441 6.878317 AGCAAGTTCACACAGAGCTTATATA 58.122 36.000 0.00 0.00 44.72 0.86
2148 2442 7.504403 AGCAAGTTCACACAGAGCTTATATAT 58.496 34.615 0.00 0.00 44.72 0.86
2267 3100 3.769844 TGCCTTAGAGATTTCGGAGAGTT 59.230 43.478 0.00 0.00 38.43 3.01
2329 3162 0.800631 CGCACACTTCATCATGCACT 59.199 50.000 0.00 0.00 37.97 4.40
2333 3166 4.270808 CGCACACTTCATCATGCACTATTA 59.729 41.667 0.00 0.00 37.97 0.98
2335 3168 6.146021 CGCACACTTCATCATGCACTATTATA 59.854 38.462 0.00 0.00 37.97 0.98
2431 4071 7.767261 ACTTTTACCGCATGAGCAATTTATAA 58.233 30.769 0.00 0.00 42.27 0.98
2434 4074 3.631686 ACCGCATGAGCAATTTATAAGCA 59.368 39.130 0.00 0.00 42.27 3.91
2646 4490 2.133195 AGGTTGACGCTTGACCTGA 58.867 52.632 0.00 0.00 42.04 3.86
2647 4491 0.468226 AGGTTGACGCTTGACCTGAA 59.532 50.000 0.00 0.00 42.04 3.02
2649 4493 1.880027 GGTTGACGCTTGACCTGAAAT 59.120 47.619 0.00 0.00 0.00 2.17
2652 4496 4.378459 GGTTGACGCTTGACCTGAAATTAG 60.378 45.833 0.00 0.00 0.00 1.73
2653 4497 4.002906 TGACGCTTGACCTGAAATTAGT 57.997 40.909 0.00 0.00 0.00 2.24
2655 4499 4.819630 TGACGCTTGACCTGAAATTAGTTT 59.180 37.500 0.00 0.00 0.00 2.66
2782 4634 6.051717 CCCAGTTCTCACCAGATAGTAAATG 58.948 44.000 0.00 0.00 0.00 2.32
2802 4654 1.134551 GCTCTAGAACCCAAGCTGGAG 60.135 57.143 0.00 0.00 40.96 3.86
2804 4656 3.366396 CTCTAGAACCCAAGCTGGAGTA 58.634 50.000 0.00 0.00 40.96 2.59
2817 4669 4.837972 AGCTGGAGTAAAGACCTGAAATC 58.162 43.478 0.00 0.00 0.00 2.17
2818 4670 4.534103 AGCTGGAGTAAAGACCTGAAATCT 59.466 41.667 0.00 0.00 0.00 2.40
2819 4671 5.013599 AGCTGGAGTAAAGACCTGAAATCTT 59.986 40.000 0.00 0.00 38.05 2.40
2820 4672 5.352846 GCTGGAGTAAAGACCTGAAATCTTC 59.647 44.000 0.00 0.00 35.31 2.87
2821 4673 6.688073 TGGAGTAAAGACCTGAAATCTTCT 57.312 37.500 0.00 0.00 35.31 2.85
2822 4674 7.579723 GCTGGAGTAAAGACCTGAAATCTTCTA 60.580 40.741 0.00 0.00 35.31 2.10
2823 4675 8.380742 TGGAGTAAAGACCTGAAATCTTCTAT 57.619 34.615 0.00 0.00 35.31 1.98
2824 4676 9.488762 TGGAGTAAAGACCTGAAATCTTCTATA 57.511 33.333 0.00 0.00 35.31 1.31
2841 4693 8.770010 TCTTCTATATCTAAATAGCTAGCCCC 57.230 38.462 12.13 0.00 30.79 5.80
2842 4694 7.785506 TCTTCTATATCTAAATAGCTAGCCCCC 59.214 40.741 12.13 0.00 30.79 5.40
2843 4695 6.993408 TCTATATCTAAATAGCTAGCCCCCA 58.007 40.000 12.13 0.00 30.79 4.96
2844 4696 7.605651 TCTATATCTAAATAGCTAGCCCCCAT 58.394 38.462 12.13 0.00 30.79 4.00
2845 4697 8.074363 TCTATATCTAAATAGCTAGCCCCCATT 58.926 37.037 12.13 3.43 30.79 3.16
2846 4698 9.381038 CTATATCTAAATAGCTAGCCCCCATTA 57.619 37.037 12.13 3.75 0.00 1.90
2847 4699 6.970165 ATCTAAATAGCTAGCCCCCATTAA 57.030 37.500 12.13 0.00 0.00 1.40
2848 4700 6.970165 TCTAAATAGCTAGCCCCCATTAAT 57.030 37.500 12.13 0.00 0.00 1.40
2849 4701 8.638570 ATCTAAATAGCTAGCCCCCATTAATA 57.361 34.615 12.13 0.00 0.00 0.98
2850 4702 8.638570 TCTAAATAGCTAGCCCCCATTAATAT 57.361 34.615 12.13 0.00 0.00 1.28
2851 4703 9.738277 TCTAAATAGCTAGCCCCCATTAATATA 57.262 33.333 12.13 0.00 0.00 0.86
2855 4707 9.868160 AATAGCTAGCCCCCATTAATATATTTC 57.132 33.333 12.13 0.00 0.00 2.17
2856 4708 7.530995 AGCTAGCCCCCATTAATATATTTCT 57.469 36.000 12.13 0.00 0.00 2.52
2857 4709 7.578203 AGCTAGCCCCCATTAATATATTTCTC 58.422 38.462 12.13 0.00 0.00 2.87
2858 4710 7.407328 AGCTAGCCCCCATTAATATATTTCTCT 59.593 37.037 12.13 0.00 0.00 3.10
2859 4711 7.717436 GCTAGCCCCCATTAATATATTTCTCTC 59.283 40.741 2.29 0.00 0.00 3.20
2860 4712 7.588866 AGCCCCCATTAATATATTTCTCTCA 57.411 36.000 2.68 0.00 0.00 3.27
2861 4713 8.000171 AGCCCCCATTAATATATTTCTCTCAA 58.000 34.615 2.68 0.00 0.00 3.02
2862 4714 7.890655 AGCCCCCATTAATATATTTCTCTCAAC 59.109 37.037 2.68 0.00 0.00 3.18
2863 4715 7.669722 GCCCCCATTAATATATTTCTCTCAACA 59.330 37.037 2.68 0.00 0.00 3.33
2864 4716 9.759473 CCCCCATTAATATATTTCTCTCAACAT 57.241 33.333 2.68 0.00 0.00 2.71
2871 4723 7.812690 ATATATTTCTCTCAACATGCAAGCA 57.187 32.000 0.00 0.00 0.00 3.91
2872 4724 6.710597 ATATTTCTCTCAACATGCAAGCAT 57.289 33.333 0.86 0.86 37.08 3.79
2885 4737 2.951457 CAAGCATGCCACATCATCAA 57.049 45.000 15.66 0.00 0.00 2.57
2886 4738 2.809446 CAAGCATGCCACATCATCAAG 58.191 47.619 15.66 0.00 0.00 3.02
2887 4739 0.744874 AGCATGCCACATCATCAAGC 59.255 50.000 15.66 0.00 0.00 4.01
2888 4740 0.458260 GCATGCCACATCATCAAGCA 59.542 50.000 6.36 0.00 37.94 3.91
2889 4741 1.134936 GCATGCCACATCATCAAGCAA 60.135 47.619 6.36 0.00 36.95 3.91
2890 4742 2.536365 CATGCCACATCATCAAGCAAC 58.464 47.619 0.00 0.00 36.95 4.17
2891 4743 1.618487 TGCCACATCATCAAGCAACA 58.382 45.000 0.00 0.00 0.00 3.33
2892 4744 2.172679 TGCCACATCATCAAGCAACAT 58.827 42.857 0.00 0.00 0.00 2.71
2893 4745 2.094442 TGCCACATCATCAAGCAACATG 60.094 45.455 0.00 0.00 0.00 3.21
2894 4746 2.536365 CCACATCATCAAGCAACATGC 58.464 47.619 0.00 0.00 45.46 4.06
2907 4759 3.171277 GCAACATGCATAACGAAAGACC 58.829 45.455 0.00 0.00 44.26 3.85
2908 4760 3.758300 CAACATGCATAACGAAAGACCC 58.242 45.455 0.00 0.00 0.00 4.46
2909 4761 3.066291 ACATGCATAACGAAAGACCCA 57.934 42.857 0.00 0.00 0.00 4.51
2910 4762 3.620488 ACATGCATAACGAAAGACCCAT 58.380 40.909 0.00 0.00 0.00 4.00
2911 4763 3.627577 ACATGCATAACGAAAGACCCATC 59.372 43.478 0.00 0.00 0.00 3.51
2912 4764 3.342377 TGCATAACGAAAGACCCATCA 57.658 42.857 0.00 0.00 0.00 3.07
2913 4765 3.006940 TGCATAACGAAAGACCCATCAC 58.993 45.455 0.00 0.00 0.00 3.06
2914 4766 3.006940 GCATAACGAAAGACCCATCACA 58.993 45.455 0.00 0.00 0.00 3.58
2915 4767 3.438781 GCATAACGAAAGACCCATCACAA 59.561 43.478 0.00 0.00 0.00 3.33
2916 4768 4.096382 GCATAACGAAAGACCCATCACAAT 59.904 41.667 0.00 0.00 0.00 2.71
2917 4769 5.393027 GCATAACGAAAGACCCATCACAATT 60.393 40.000 0.00 0.00 0.00 2.32
2918 4770 4.766404 AACGAAAGACCCATCACAATTC 57.234 40.909 0.00 0.00 0.00 2.17
2919 4771 3.750371 ACGAAAGACCCATCACAATTCA 58.250 40.909 0.00 0.00 0.00 2.57
2920 4772 3.502211 ACGAAAGACCCATCACAATTCAC 59.498 43.478 0.00 0.00 0.00 3.18
2921 4773 3.501828 CGAAAGACCCATCACAATTCACA 59.498 43.478 0.00 0.00 0.00 3.58
2922 4774 4.023279 CGAAAGACCCATCACAATTCACAA 60.023 41.667 0.00 0.00 0.00 3.33
2923 4775 4.853924 AAGACCCATCACAATTCACAAC 57.146 40.909 0.00 0.00 0.00 3.32
2924 4776 3.831323 AGACCCATCACAATTCACAACA 58.169 40.909 0.00 0.00 0.00 3.33
2925 4777 4.410099 AGACCCATCACAATTCACAACAT 58.590 39.130 0.00 0.00 0.00 2.71
2926 4778 4.219070 AGACCCATCACAATTCACAACATG 59.781 41.667 0.00 0.00 0.00 3.21
2927 4779 3.255725 CCCATCACAATTCACAACATGC 58.744 45.455 0.00 0.00 0.00 4.06
2928 4780 3.306156 CCCATCACAATTCACAACATGCA 60.306 43.478 0.00 0.00 0.00 3.96
2929 4781 4.500127 CCATCACAATTCACAACATGCAT 58.500 39.130 0.00 0.00 0.00 3.96
2930 4782 4.932799 CCATCACAATTCACAACATGCATT 59.067 37.500 0.00 0.00 0.00 3.56
2931 4783 5.062934 CCATCACAATTCACAACATGCATTC 59.937 40.000 0.00 0.00 0.00 2.67
2932 4784 5.197682 TCACAATTCACAACATGCATTCA 57.802 34.783 0.00 0.00 0.00 2.57
2933 4785 5.785243 TCACAATTCACAACATGCATTCAT 58.215 33.333 0.00 0.00 0.00 2.57
2951 4803 4.177165 TCATGCACATGAAAATGTCCAC 57.823 40.909 10.82 0.00 44.14 4.02
2952 4804 3.056678 TCATGCACATGAAAATGTCCACC 60.057 43.478 10.82 0.00 44.14 4.61
2953 4805 2.596346 TGCACATGAAAATGTCCACCT 58.404 42.857 0.00 0.00 31.37 4.00
2954 4806 2.557924 TGCACATGAAAATGTCCACCTC 59.442 45.455 0.00 0.00 31.37 3.85
2955 4807 2.557924 GCACATGAAAATGTCCACCTCA 59.442 45.455 0.00 0.00 31.37 3.86
2956 4808 3.005684 GCACATGAAAATGTCCACCTCAA 59.994 43.478 0.00 0.00 31.37 3.02
2957 4809 4.549458 CACATGAAAATGTCCACCTCAAC 58.451 43.478 0.00 0.00 31.37 3.18
2958 4810 4.037803 CACATGAAAATGTCCACCTCAACA 59.962 41.667 0.00 0.00 31.37 3.33
2959 4811 4.834496 ACATGAAAATGTCCACCTCAACAT 59.166 37.500 0.00 0.00 37.71 2.71
2960 4812 4.852134 TGAAAATGTCCACCTCAACATG 57.148 40.909 0.00 0.00 36.28 3.21
2961 4813 3.005684 TGAAAATGTCCACCTCAACATGC 59.994 43.478 0.00 0.00 36.28 4.06
2962 4814 2.291209 AATGTCCACCTCAACATGCA 57.709 45.000 0.00 0.00 36.28 3.96
2963 4815 2.291209 ATGTCCACCTCAACATGCAA 57.709 45.000 0.00 0.00 34.88 4.08
2964 4816 2.064434 TGTCCACCTCAACATGCAAA 57.936 45.000 0.00 0.00 0.00 3.68
2965 4817 1.680735 TGTCCACCTCAACATGCAAAC 59.319 47.619 0.00 0.00 0.00 2.93
2966 4818 1.680735 GTCCACCTCAACATGCAAACA 59.319 47.619 0.00 0.00 0.00 2.83
2967 4819 2.297033 GTCCACCTCAACATGCAAACAT 59.703 45.455 0.00 0.00 36.79 2.71
2968 4820 3.505680 GTCCACCTCAACATGCAAACATA 59.494 43.478 0.00 0.00 33.67 2.29
2969 4821 4.158394 GTCCACCTCAACATGCAAACATAT 59.842 41.667 0.00 0.00 33.67 1.78
2970 4822 5.356751 GTCCACCTCAACATGCAAACATATA 59.643 40.000 0.00 0.00 33.67 0.86
2971 4823 6.039717 GTCCACCTCAACATGCAAACATATAT 59.960 38.462 0.00 0.00 33.67 0.86
2972 4824 6.606796 TCCACCTCAACATGCAAACATATATT 59.393 34.615 0.00 0.00 33.67 1.28
2973 4825 7.777440 TCCACCTCAACATGCAAACATATATTA 59.223 33.333 0.00 0.00 33.67 0.98
2974 4826 8.077991 CCACCTCAACATGCAAACATATATTAG 58.922 37.037 0.00 0.00 33.67 1.73
2975 4827 8.839343 CACCTCAACATGCAAACATATATTAGA 58.161 33.333 0.00 0.00 33.67 2.10
2976 4828 9.578576 ACCTCAACATGCAAACATATATTAGAT 57.421 29.630 0.00 0.00 33.67 1.98
3021 4873 9.169468 CGAACACAATAAAGTATATGGATTTGC 57.831 33.333 0.00 0.00 0.00 3.68
3036 4888 7.961325 ATGGATTTGCAATTTTAGTTTTCGT 57.039 28.000 0.00 0.00 0.00 3.85
3038 4890 8.514136 TGGATTTGCAATTTTAGTTTTCGTAG 57.486 30.769 0.00 0.00 0.00 3.51
3039 4891 8.138712 TGGATTTGCAATTTTAGTTTTCGTAGT 58.861 29.630 0.00 0.00 0.00 2.73
3040 4892 9.615295 GGATTTGCAATTTTAGTTTTCGTAGTA 57.385 29.630 0.00 0.00 0.00 1.82
3044 4896 9.601971 TTGCAATTTTAGTTTTCGTAGTATCAC 57.398 29.630 0.00 0.00 0.00 3.06
3045 4897 8.995220 TGCAATTTTAGTTTTCGTAGTATCACT 58.005 29.630 0.00 0.00 0.00 3.41
3054 4906 9.846248 AGTTTTCGTAGTATCACTATTTACGTT 57.154 29.630 0.00 0.00 38.48 3.99
3056 4908 8.841444 TTTCGTAGTATCACTATTTACGTTCC 57.159 34.615 0.00 0.00 38.48 3.62
3057 4909 7.552458 TCGTAGTATCACTATTTACGTTCCA 57.448 36.000 0.00 0.00 38.48 3.53
3058 4910 8.158169 TCGTAGTATCACTATTTACGTTCCAT 57.842 34.615 0.00 0.00 38.48 3.41
3059 4911 9.271828 TCGTAGTATCACTATTTACGTTCCATA 57.728 33.333 0.00 0.00 38.48 2.74
3060 4912 9.539139 CGTAGTATCACTATTTACGTTCCATAG 57.461 37.037 0.00 0.00 32.65 2.23
3067 4919 9.309516 TCACTATTTACGTTCCATAGAAATCAC 57.690 33.333 12.74 0.00 32.58 3.06
3068 4920 9.093970 CACTATTTACGTTCCATAGAAATCACA 57.906 33.333 12.74 0.00 32.58 3.58
3069 4921 9.832445 ACTATTTACGTTCCATAGAAATCACAT 57.168 29.630 12.74 0.00 32.58 3.21
3073 4925 9.825109 TTTACGTTCCATAGAAATCACATATCA 57.175 29.630 0.00 0.00 32.58 2.15
3074 4926 9.996554 TTACGTTCCATAGAAATCACATATCAT 57.003 29.630 0.00 0.00 32.58 2.45
3075 4927 8.539770 ACGTTCCATAGAAATCACATATCATC 57.460 34.615 0.00 0.00 32.58 2.92
3076 4928 7.329471 ACGTTCCATAGAAATCACATATCATCG 59.671 37.037 0.00 0.00 32.58 3.84
3077 4929 7.542130 CGTTCCATAGAAATCACATATCATCGA 59.458 37.037 0.00 0.00 32.58 3.59
3078 4930 9.208022 GTTCCATAGAAATCACATATCATCGAA 57.792 33.333 0.00 0.00 32.58 3.71
3079 4931 9.777297 TTCCATAGAAATCACATATCATCGAAA 57.223 29.630 0.00 0.00 0.00 3.46
3080 4932 9.948964 TCCATAGAAATCACATATCATCGAAAT 57.051 29.630 0.00 0.00 0.00 2.17
3081 4933 9.983804 CCATAGAAATCACATATCATCGAAATG 57.016 33.333 0.00 0.00 0.00 2.32
3087 4939 9.616634 AAATCACATATCATCGAAATGTATTGC 57.383 29.630 0.00 0.00 32.70 3.56
3088 4940 7.727331 TCACATATCATCGAAATGTATTGCA 57.273 32.000 0.00 0.00 32.70 4.08
3089 4941 8.152309 TCACATATCATCGAAATGTATTGCAA 57.848 30.769 0.00 0.00 32.70 4.08
3090 4942 8.619546 TCACATATCATCGAAATGTATTGCAAA 58.380 29.630 1.71 0.00 32.70 3.68
3091 4943 9.401873 CACATATCATCGAAATGTATTGCAAAT 57.598 29.630 1.71 0.00 32.70 2.32
3096 4948 9.630098 ATCATCGAAATGTATTGCAAATATTCC 57.370 29.630 1.71 0.00 34.32 3.01
3097 4949 8.081633 TCATCGAAATGTATTGCAAATATTCCC 58.918 33.333 1.71 0.75 34.32 3.97
3098 4950 6.434596 TCGAAATGTATTGCAAATATTCCCG 58.565 36.000 1.71 11.22 0.00 5.14
3099 4951 5.116983 CGAAATGTATTGCAAATATTCCCGC 59.883 40.000 1.71 0.00 0.00 6.13
3100 4952 5.528043 AATGTATTGCAAATATTCCCGCA 57.472 34.783 1.71 3.71 0.00 5.69
3102 4954 4.677584 TGTATTGCAAATATTCCCGCAAC 58.322 39.130 17.25 10.31 46.21 4.17
3103 4955 3.883830 ATTGCAAATATTCCCGCAACA 57.116 38.095 17.25 2.96 46.21 3.33
3104 4956 3.667497 TTGCAAATATTCCCGCAACAA 57.333 38.095 13.09 0.00 39.32 2.83
3105 4957 2.953020 TGCAAATATTCCCGCAACAAC 58.047 42.857 5.05 0.00 0.00 3.32
3106 4958 1.917303 GCAAATATTCCCGCAACAACG 59.083 47.619 0.00 0.00 0.00 4.10
3107 4959 2.669950 GCAAATATTCCCGCAACAACGT 60.670 45.455 0.00 0.00 0.00 3.99
3108 4960 2.911819 AATATTCCCGCAACAACGTG 57.088 45.000 0.00 0.00 0.00 4.49
3109 4961 0.450184 ATATTCCCGCAACAACGTGC 59.550 50.000 0.00 0.00 41.32 5.34
3115 4967 2.973600 GCAACAACGTGCGGGGTA 60.974 61.111 0.00 0.00 34.21 3.69
3116 4968 2.329614 GCAACAACGTGCGGGGTAT 61.330 57.895 0.00 0.00 34.21 2.73
3117 4969 1.791662 CAACAACGTGCGGGGTATC 59.208 57.895 0.00 0.00 0.00 2.24
3118 4970 0.951525 CAACAACGTGCGGGGTATCA 60.952 55.000 0.00 0.00 0.00 2.15
3119 4971 0.035820 AACAACGTGCGGGGTATCAT 60.036 50.000 0.00 0.00 0.00 2.45
3120 4972 0.461339 ACAACGTGCGGGGTATCATC 60.461 55.000 0.00 0.00 0.00 2.92
3121 4973 0.179084 CAACGTGCGGGGTATCATCT 60.179 55.000 0.00 0.00 0.00 2.90
3122 4974 1.067974 CAACGTGCGGGGTATCATCTA 59.932 52.381 0.00 0.00 0.00 1.98
3123 4975 0.959553 ACGTGCGGGGTATCATCTAG 59.040 55.000 0.00 0.00 0.00 2.43
3124 4976 0.959553 CGTGCGGGGTATCATCTAGT 59.040 55.000 0.00 0.00 0.00 2.57
3125 4977 1.340248 CGTGCGGGGTATCATCTAGTT 59.660 52.381 0.00 0.00 0.00 2.24
3126 4978 2.555325 CGTGCGGGGTATCATCTAGTTA 59.445 50.000 0.00 0.00 0.00 2.24
3127 4979 3.366070 CGTGCGGGGTATCATCTAGTTAG 60.366 52.174 0.00 0.00 0.00 2.34
3128 4980 3.573110 GTGCGGGGTATCATCTAGTTAGT 59.427 47.826 0.00 0.00 0.00 2.24
3129 4981 4.763793 GTGCGGGGTATCATCTAGTTAGTA 59.236 45.833 0.00 0.00 0.00 1.82
3149 5017 8.910944 GTTAGTATAGTAGGAACAACTGGATGA 58.089 37.037 0.00 0.00 0.00 2.92
3164 5033 2.501316 TGGATGAGTCATGATTCCGTGT 59.499 45.455 11.20 0.00 0.00 4.49
3496 7040 7.097192 CACATGCACGTATATAGGGAAATACT 58.903 38.462 7.32 0.00 0.00 2.12
3564 7194 5.432885 TTGCATGCATATCACAATCTGAG 57.567 39.130 23.37 0.00 30.20 3.35
3725 7355 1.773391 CCAGATGGCCATCCTCCCT 60.773 63.158 36.81 19.21 38.58 4.20
3774 7404 1.271054 GCCTTGTCTGCTTCAAGAGGA 60.271 52.381 14.27 0.00 43.17 3.71
3887 7517 2.032681 GGCAAGGACAAGCTCCGT 59.967 61.111 0.00 0.00 45.10 4.69
3994 7633 7.376072 GCGTTTATCTTTTGCTCCAACATATAC 59.624 37.037 0.00 0.00 0.00 1.47
3995 7634 8.394877 CGTTTATCTTTTGCTCCAACATATACA 58.605 33.333 0.00 0.00 0.00 2.29
4012 7659 1.990799 ACAAATCGATCGACGCTGAA 58.009 45.000 22.06 0.00 42.26 3.02
4459 8405 2.423898 CCCACGGCCGAGTCTGTAT 61.424 63.158 35.90 2.60 0.00 2.29
4467 8414 0.674534 CCGAGTCTGTATGTAGCCCC 59.325 60.000 0.00 0.00 0.00 5.80
4487 8434 7.970102 AGCCCCGTATAATACATTCTTTTAGA 58.030 34.615 0.00 0.00 0.00 2.10
4570 8521 6.844917 AGAATATACTAGTGGTTAGGGCTTGT 59.155 38.462 5.39 0.00 33.42 3.16
4579 8530 0.037590 TTAGGGCTTGTCATTGCGGT 59.962 50.000 0.00 0.00 0.00 5.68
4680 8631 3.673323 GCACATTGGGCTAGCTTGTTTAC 60.673 47.826 15.72 0.00 0.00 2.01
4722 8676 1.401761 TGAACATTGGCTTGTGTGCT 58.598 45.000 0.00 0.00 0.00 4.40
4737 8706 3.219281 GTGTGCTCCTTTGGAAAAGGTA 58.781 45.455 16.34 5.16 38.55 3.08
4778 8750 4.351054 CCACGCCCTCCCTTGCTT 62.351 66.667 0.00 0.00 0.00 3.91
4794 8766 0.179234 GCTTCTACCCTCAAGGCCTC 59.821 60.000 5.23 0.00 40.58 4.70
4841 8813 1.153524 TGGTTTGCCATGGAGCACT 59.846 52.632 18.40 0.00 43.97 4.40
4843 8815 1.181098 GGTTTGCCATGGAGCACTGT 61.181 55.000 18.40 0.00 43.97 3.55
4852 8824 2.865119 TGGAGCACTGTGATCACATT 57.135 45.000 28.00 20.28 41.01 2.71
4907 8879 0.174845 CCCTATGACGGTTTGCTCGA 59.825 55.000 0.00 0.00 0.00 4.04
4938 8911 3.167485 ACTGGCATTGATCACCAACAAT 58.833 40.909 0.00 0.00 37.63 2.71
4990 8965 1.910671 AGTAATCCGGGCCAAACACTA 59.089 47.619 4.39 0.00 0.00 2.74
5004 8979 3.679824 AACACTACTACCACAGCCTTC 57.320 47.619 0.00 0.00 0.00 3.46
5020 8995 6.595326 CACAGCCTTCTAGAATTTGTACATGA 59.405 38.462 5.44 0.00 0.00 3.07
5024 8999 8.540388 AGCCTTCTAGAATTTGTACATGAAGTA 58.460 33.333 5.44 0.00 0.00 2.24
5153 9128 3.309410 CCAATCTTTCCCAGGACATCCTT 60.309 47.826 0.00 0.00 46.09 3.36
5161 9136 1.271543 CCAGGACATCCTTCTTGCACA 60.272 52.381 0.00 0.00 46.09 4.57
5181 9156 2.582178 CGAAATAGTTGTCGTACGCG 57.418 50.000 11.24 3.53 39.92 6.01
5190 9165 2.046411 TCGTACGCGACCACCCTA 60.046 61.111 15.93 0.00 42.81 3.53
5224 10743 5.186198 GGTTAAACACATGTCTAGCCATCT 58.814 41.667 0.00 0.00 0.00 2.90
5259 10778 4.755123 CGGAATAGGTTGTGTTTGAAGAGT 59.245 41.667 0.00 0.00 0.00 3.24
5271 10790 0.904865 TGAAGAGTGGGTCAGCGGAT 60.905 55.000 0.00 0.00 0.00 4.18
5284 10804 0.745468 AGCGGATTCGAAGTAGTCCC 59.255 55.000 3.35 0.54 39.00 4.46
5288 10808 0.745468 GATTCGAAGTAGTCCCGCCT 59.255 55.000 3.35 0.00 0.00 5.52
5304 10824 3.393472 CCTGAGTAGGCAATGCTCC 57.607 57.895 4.82 0.00 39.73 4.70
5305 10825 0.835941 CCTGAGTAGGCAATGCTCCT 59.164 55.000 4.82 0.00 39.73 3.69
5342 10862 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
5343 10863 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
5344 10864 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
5345 10865 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
5346 10866 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
5347 10867 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
5348 10868 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
5349 10869 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
5350 10870 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
5351 10871 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
5352 10872 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
5353 10873 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
5354 10874 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
5355 10875 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
5356 10876 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
5357 10877 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
5358 10878 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
5359 10879 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
5382 10902 1.801395 CGATTCAACGCCGGAGTATGT 60.801 52.381 12.53 0.00 0.00 2.29
5391 10911 2.437625 CGGAGTATGTCCCGGGATT 58.562 57.895 29.73 20.01 43.47 3.01
5456 10978 0.034337 CCAAAGCAGCAGCCACAATT 59.966 50.000 0.00 0.00 43.56 2.32
5471 10993 4.139786 CCACAATTTCCTCATCATCGGAT 58.860 43.478 0.00 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 59 0.822532 GAGCATAGCAGCAAGGCCAT 60.823 55.000 5.01 0.00 36.85 4.40
64 66 2.107750 GAGGCGAGCATAGCAGCA 59.892 61.111 10.57 0.00 39.04 4.41
127 129 7.702386 TGTCGAAGTCATTTTTCATGAAGAAA 58.298 30.769 14.66 14.35 44.21 2.52
200 202 3.458189 CATATCACTTCGAGTTGGGGTC 58.542 50.000 0.00 0.00 0.00 4.46
242 244 6.715718 TCAAATAAAACGATTTGGACCCAGTA 59.284 34.615 0.28 0.00 43.87 2.74
283 285 2.523245 TGGGCTGTCAAACATTATGCA 58.477 42.857 0.00 0.00 0.00 3.96
299 304 1.748493 TGTTGACACTTCAAGTTGGGC 59.252 47.619 2.34 0.00 42.60 5.36
366 372 3.956199 CCAATGCCAACATCTTACCATCT 59.044 43.478 0.00 0.00 34.62 2.90
461 468 2.542020 TCCAACGACTTTGCAGATCA 57.458 45.000 0.00 0.00 33.34 2.92
529 536 7.265647 TCAAAAACTATGACGGACAAAATCA 57.734 32.000 0.00 0.00 0.00 2.57
562 569 0.432361 GTACGAGCGACCGACAAAAC 59.568 55.000 3.95 0.00 0.00 2.43
652 659 4.970662 TTATAACTTGGTACGAGCGACT 57.029 40.909 0.00 0.00 0.00 4.18
692 699 9.264719 AGAACCATTTTGATGAGTTTTGAAATC 57.735 29.630 0.00 0.00 0.00 2.17
715 722 4.821805 GTGACCAGGTCTTTCAAATGAGAA 59.178 41.667 20.82 0.00 33.15 2.87
773 780 2.755655 TCTTGGCTTTTGAACCAAACGA 59.244 40.909 0.00 0.00 45.03 3.85
796 827 1.663135 GAGAGCACGCATCCTCTTTTC 59.337 52.381 0.00 0.00 38.48 2.29
846 877 1.696832 GCTAGCGAACTGGAAAGCCG 61.697 60.000 0.00 0.00 36.79 5.52
912 943 1.610522 GCATGTGAGCTTTCCACAGTT 59.389 47.619 11.80 0.00 46.19 3.16
915 946 1.527034 GAGCATGTGAGCTTTCCACA 58.473 50.000 8.96 8.96 46.75 4.17
1066 1119 0.179032 CTAGGAGGCTGCGAGAGAGA 60.179 60.000 10.55 0.00 0.00 3.10
1138 1268 0.466007 TGGCTGTGTGTGTGCTGATT 60.466 50.000 0.00 0.00 0.00 2.57
1426 1581 2.356673 GAAGGGTCGTCGCGGTTT 60.357 61.111 6.13 0.00 0.00 3.27
1457 1612 0.463204 AGGTAGTCGACGATCTCCGA 59.537 55.000 10.46 2.76 41.76 4.55
1519 1674 1.378762 CACCACCTTGGACCCGAAT 59.621 57.895 0.00 0.00 40.96 3.34
1931 2166 5.527951 AGATCAATAGCGCTCTTCTTGTAG 58.472 41.667 16.34 0.00 0.00 2.74
2102 2368 7.408756 TGCTTGGCATATTCTTTTTCTACAT 57.591 32.000 0.00 0.00 31.71 2.29
2156 2451 9.773328 CACAACACATATTACTATCCTGTTTTG 57.227 33.333 0.00 0.00 35.01 2.44
2175 2471 1.265905 GATGGGACGTTTCCACAACAC 59.734 52.381 12.77 1.68 44.98 3.32
2235 2794 2.540383 TCTCTAAGGCACATGTCACCT 58.460 47.619 10.60 10.60 34.45 4.00
2267 3100 3.519510 CCTTTTCTGGACCAGAGTATCCA 59.480 47.826 23.14 5.75 41.75 3.41
2333 3166 7.863901 ATGCAAGAGACCTACCTAGAATTAT 57.136 36.000 0.00 0.00 0.00 1.28
2335 3168 6.567602 AATGCAAGAGACCTACCTAGAATT 57.432 37.500 0.00 0.00 0.00 2.17
2338 3482 5.955959 TGTAAATGCAAGAGACCTACCTAGA 59.044 40.000 0.00 0.00 0.00 2.43
2431 4071 9.783081 TTGTTACATATATGATTGAGTGATGCT 57.217 29.630 19.63 0.00 0.00 3.79
2524 4341 5.305585 CCAGCTACCAGTCTAGTTTTGAAA 58.694 41.667 0.00 0.00 0.00 2.69
2528 4345 2.637872 TGCCAGCTACCAGTCTAGTTTT 59.362 45.455 0.00 0.00 0.00 2.43
2630 4474 3.626028 AATTTCAGGTCAAGCGTCAAC 57.374 42.857 0.00 0.00 0.00 3.18
2699 4543 9.338622 GTTTTGGCTGTATAGTGGACTATTATT 57.661 33.333 4.66 0.00 39.66 1.40
2706 4550 2.095372 GCGTTTTGGCTGTATAGTGGAC 59.905 50.000 0.00 0.00 0.00 4.02
2712 4556 3.046968 TGACTGCGTTTTGGCTGTATA 57.953 42.857 0.00 0.00 43.82 1.47
2713 4557 1.890876 TGACTGCGTTTTGGCTGTAT 58.109 45.000 0.00 0.00 43.82 2.29
2717 4561 1.869342 GCAAATGACTGCGTTTTGGCT 60.869 47.619 0.00 0.00 31.01 4.75
2718 4562 0.508213 GCAAATGACTGCGTTTTGGC 59.492 50.000 0.00 0.00 31.01 4.52
2719 4563 1.788308 CTGCAAATGACTGCGTTTTGG 59.212 47.619 0.00 0.00 45.74 3.28
2782 4634 0.905357 TCCAGCTTGGGTTCTAGAGC 59.095 55.000 0.00 0.00 38.32 4.09
2817 4669 7.565398 TGGGGGCTAGCTATTTAGATATAGAAG 59.435 40.741 15.72 0.00 31.10 2.85
2818 4670 7.427501 TGGGGGCTAGCTATTTAGATATAGAA 58.572 38.462 15.72 0.00 31.10 2.10
2819 4671 6.993408 TGGGGGCTAGCTATTTAGATATAGA 58.007 40.000 15.72 0.00 31.10 1.98
2820 4672 7.863901 ATGGGGGCTAGCTATTTAGATATAG 57.136 40.000 15.72 0.00 0.00 1.31
2821 4673 9.738277 TTAATGGGGGCTAGCTATTTAGATATA 57.262 33.333 15.72 0.00 0.00 0.86
2822 4674 8.638570 TTAATGGGGGCTAGCTATTTAGATAT 57.361 34.615 15.72 0.00 0.00 1.63
2823 4675 8.638570 ATTAATGGGGGCTAGCTATTTAGATA 57.361 34.615 15.72 0.00 0.00 1.98
2824 4676 6.970165 TTAATGGGGGCTAGCTATTTAGAT 57.030 37.500 15.72 0.00 0.00 1.98
2825 4677 6.970165 ATTAATGGGGGCTAGCTATTTAGA 57.030 37.500 15.72 0.00 0.00 2.10
2829 4681 9.868160 GAAATATATTAATGGGGGCTAGCTATT 57.132 33.333 15.72 12.29 0.00 1.73
2830 4682 9.242549 AGAAATATATTAATGGGGGCTAGCTAT 57.757 33.333 15.72 3.75 0.00 2.97
2831 4683 8.638570 AGAAATATATTAATGGGGGCTAGCTA 57.361 34.615 15.72 0.00 0.00 3.32
2832 4684 7.407328 AGAGAAATATATTAATGGGGGCTAGCT 59.593 37.037 15.72 0.00 0.00 3.32
2833 4685 7.578203 AGAGAAATATATTAATGGGGGCTAGC 58.422 38.462 6.04 6.04 0.00 3.42
2834 4686 8.772250 TGAGAGAAATATATTAATGGGGGCTAG 58.228 37.037 0.00 0.00 0.00 3.42
2835 4687 8.694171 TGAGAGAAATATATTAATGGGGGCTA 57.306 34.615 0.00 0.00 0.00 3.93
2836 4688 7.588866 TGAGAGAAATATATTAATGGGGGCT 57.411 36.000 0.00 0.00 0.00 5.19
2837 4689 7.669722 TGTTGAGAGAAATATATTAATGGGGGC 59.330 37.037 0.00 0.00 0.00 5.80
2838 4690 9.759473 ATGTTGAGAGAAATATATTAATGGGGG 57.241 33.333 0.00 0.00 0.00 5.40
2845 4697 9.341078 TGCTTGCATGTTGAGAGAAATATATTA 57.659 29.630 0.00 0.00 0.00 0.98
2846 4698 8.229253 TGCTTGCATGTTGAGAGAAATATATT 57.771 30.769 1.14 0.00 0.00 1.28
2847 4699 7.812690 TGCTTGCATGTTGAGAGAAATATAT 57.187 32.000 1.14 0.00 0.00 0.86
2848 4700 7.645402 CATGCTTGCATGTTGAGAGAAATATA 58.355 34.615 23.00 0.00 0.00 0.86
2849 4701 6.504398 CATGCTTGCATGTTGAGAGAAATAT 58.496 36.000 23.00 0.00 0.00 1.28
2850 4702 5.886992 CATGCTTGCATGTTGAGAGAAATA 58.113 37.500 23.00 0.00 0.00 1.40
2851 4703 4.744570 CATGCTTGCATGTTGAGAGAAAT 58.255 39.130 23.00 0.00 0.00 2.17
2852 4704 4.168922 CATGCTTGCATGTTGAGAGAAA 57.831 40.909 23.00 0.00 0.00 2.52
2853 4705 3.842732 CATGCTTGCATGTTGAGAGAA 57.157 42.857 23.00 0.00 0.00 2.87
2866 4718 2.809446 CTTGATGATGTGGCATGCTTG 58.191 47.619 18.92 0.00 0.00 4.01
2867 4719 1.136305 GCTTGATGATGTGGCATGCTT 59.864 47.619 18.92 0.00 32.10 3.91
2868 4720 0.744874 GCTTGATGATGTGGCATGCT 59.255 50.000 18.92 0.00 32.10 3.79
2869 4721 0.458260 TGCTTGATGATGTGGCATGC 59.542 50.000 9.90 9.90 34.46 4.06
2870 4722 2.094442 TGTTGCTTGATGATGTGGCATG 60.094 45.455 0.00 0.00 32.87 4.06
2871 4723 2.172679 TGTTGCTTGATGATGTGGCAT 58.827 42.857 0.00 0.00 32.87 4.40
2872 4724 1.618487 TGTTGCTTGATGATGTGGCA 58.382 45.000 0.00 0.00 0.00 4.92
2873 4725 2.536365 CATGTTGCTTGATGATGTGGC 58.464 47.619 0.00 0.00 0.00 5.01
2874 4726 2.094442 TGCATGTTGCTTGATGATGTGG 60.094 45.455 0.75 0.00 45.31 4.17
2875 4727 3.224884 TGCATGTTGCTTGATGATGTG 57.775 42.857 0.75 0.00 45.31 3.21
2876 4728 5.345702 GTTATGCATGTTGCTTGATGATGT 58.654 37.500 10.16 0.00 45.31 3.06
2877 4729 4.439776 CGTTATGCATGTTGCTTGATGATG 59.560 41.667 10.16 0.00 45.31 3.07
2878 4730 4.336153 TCGTTATGCATGTTGCTTGATGAT 59.664 37.500 10.16 0.00 45.31 2.45
2879 4731 3.688673 TCGTTATGCATGTTGCTTGATGA 59.311 39.130 10.16 0.33 45.31 2.92
2880 4732 4.018649 TCGTTATGCATGTTGCTTGATG 57.981 40.909 10.16 0.00 45.31 3.07
2881 4733 4.700268 TTCGTTATGCATGTTGCTTGAT 57.300 36.364 10.16 0.00 45.31 2.57
2882 4734 4.215185 TCTTTCGTTATGCATGTTGCTTGA 59.785 37.500 10.16 0.00 45.31 3.02
2883 4735 4.321745 GTCTTTCGTTATGCATGTTGCTTG 59.678 41.667 10.16 0.00 45.31 4.01
2884 4736 4.475944 GTCTTTCGTTATGCATGTTGCTT 58.524 39.130 10.16 0.00 45.31 3.91
2885 4737 3.119849 GGTCTTTCGTTATGCATGTTGCT 60.120 43.478 10.16 0.00 45.31 3.91
2886 4738 3.171277 GGTCTTTCGTTATGCATGTTGC 58.829 45.455 10.16 0.00 45.29 4.17
2887 4739 3.190327 TGGGTCTTTCGTTATGCATGTTG 59.810 43.478 10.16 0.00 0.00 3.33
2888 4740 3.417101 TGGGTCTTTCGTTATGCATGTT 58.583 40.909 10.16 0.00 0.00 2.71
2889 4741 3.066291 TGGGTCTTTCGTTATGCATGT 57.934 42.857 10.16 0.00 0.00 3.21
2890 4742 3.627123 TGATGGGTCTTTCGTTATGCATG 59.373 43.478 10.16 0.00 0.00 4.06
2891 4743 3.627577 GTGATGGGTCTTTCGTTATGCAT 59.372 43.478 3.79 3.79 0.00 3.96
2892 4744 3.006940 GTGATGGGTCTTTCGTTATGCA 58.993 45.455 0.00 0.00 0.00 3.96
2893 4745 3.006940 TGTGATGGGTCTTTCGTTATGC 58.993 45.455 0.00 0.00 0.00 3.14
2894 4746 5.818136 ATTGTGATGGGTCTTTCGTTATG 57.182 39.130 0.00 0.00 0.00 1.90
2895 4747 5.943416 TGAATTGTGATGGGTCTTTCGTTAT 59.057 36.000 0.00 0.00 0.00 1.89
2896 4748 5.180492 GTGAATTGTGATGGGTCTTTCGTTA 59.820 40.000 0.00 0.00 0.00 3.18
2897 4749 4.023193 GTGAATTGTGATGGGTCTTTCGTT 60.023 41.667 0.00 0.00 0.00 3.85
2898 4750 3.502211 GTGAATTGTGATGGGTCTTTCGT 59.498 43.478 0.00 0.00 0.00 3.85
2899 4751 3.501828 TGTGAATTGTGATGGGTCTTTCG 59.498 43.478 0.00 0.00 0.00 3.46
2900 4752 5.221224 TGTTGTGAATTGTGATGGGTCTTTC 60.221 40.000 0.00 0.00 0.00 2.62
2901 4753 4.648762 TGTTGTGAATTGTGATGGGTCTTT 59.351 37.500 0.00 0.00 0.00 2.52
2902 4754 4.214310 TGTTGTGAATTGTGATGGGTCTT 58.786 39.130 0.00 0.00 0.00 3.01
2903 4755 3.831323 TGTTGTGAATTGTGATGGGTCT 58.169 40.909 0.00 0.00 0.00 3.85
2904 4756 4.487948 CATGTTGTGAATTGTGATGGGTC 58.512 43.478 0.00 0.00 0.00 4.46
2905 4757 3.306225 GCATGTTGTGAATTGTGATGGGT 60.306 43.478 0.00 0.00 0.00 4.51
2906 4758 3.255725 GCATGTTGTGAATTGTGATGGG 58.744 45.455 0.00 0.00 0.00 4.00
2907 4759 3.915536 TGCATGTTGTGAATTGTGATGG 58.084 40.909 0.00 0.00 0.00 3.51
2908 4760 5.635700 TGAATGCATGTTGTGAATTGTGATG 59.364 36.000 0.00 0.00 36.14 3.07
2909 4761 5.785243 TGAATGCATGTTGTGAATTGTGAT 58.215 33.333 0.00 0.00 36.14 3.06
2910 4762 5.197682 TGAATGCATGTTGTGAATTGTGA 57.802 34.783 0.00 0.00 36.14 3.58
2911 4763 5.853081 CATGAATGCATGTTGTGAATTGTG 58.147 37.500 5.39 0.00 45.41 3.33
2935 4787 4.037803 TGTTGAGGTGGACATTTTCATGTG 59.962 41.667 0.00 0.00 44.22 3.21
2937 4789 4.852134 TGTTGAGGTGGACATTTTCATG 57.148 40.909 0.00 0.00 36.34 3.07
2938 4790 4.322198 GCATGTTGAGGTGGACATTTTCAT 60.322 41.667 0.00 0.00 34.42 2.57
2939 4791 3.005684 GCATGTTGAGGTGGACATTTTCA 59.994 43.478 0.00 0.00 34.42 2.69
2940 4792 3.005684 TGCATGTTGAGGTGGACATTTTC 59.994 43.478 0.00 0.00 34.42 2.29
2941 4793 2.964464 TGCATGTTGAGGTGGACATTTT 59.036 40.909 0.00 0.00 34.42 1.82
2942 4794 2.596346 TGCATGTTGAGGTGGACATTT 58.404 42.857 0.00 0.00 34.42 2.32
2943 4795 2.291209 TGCATGTTGAGGTGGACATT 57.709 45.000 0.00 0.00 34.42 2.71
2944 4796 2.291209 TTGCATGTTGAGGTGGACAT 57.709 45.000 0.00 0.00 36.97 3.06
2945 4797 1.680735 GTTTGCATGTTGAGGTGGACA 59.319 47.619 0.00 0.00 0.00 4.02
2946 4798 1.680735 TGTTTGCATGTTGAGGTGGAC 59.319 47.619 0.00 0.00 0.00 4.02
2947 4799 2.064434 TGTTTGCATGTTGAGGTGGA 57.936 45.000 0.00 0.00 0.00 4.02
2948 4800 4.724074 ATATGTTTGCATGTTGAGGTGG 57.276 40.909 0.00 0.00 36.58 4.61
2949 4801 8.839343 TCTAATATATGTTTGCATGTTGAGGTG 58.161 33.333 0.00 0.00 36.58 4.00
2950 4802 8.978874 TCTAATATATGTTTGCATGTTGAGGT 57.021 30.769 0.00 0.00 36.58 3.85
2995 4847 9.169468 GCAAATCCATATACTTTATTGTGTTCG 57.831 33.333 0.00 0.00 0.00 3.95
3010 4862 9.651913 ACGAAAACTAAAATTGCAAATCCATAT 57.348 25.926 1.71 0.00 0.00 1.78
3012 4864 7.961325 ACGAAAACTAAAATTGCAAATCCAT 57.039 28.000 1.71 0.00 0.00 3.41
3013 4865 8.138712 ACTACGAAAACTAAAATTGCAAATCCA 58.861 29.630 1.71 0.00 0.00 3.41
3014 4866 8.515473 ACTACGAAAACTAAAATTGCAAATCC 57.485 30.769 1.71 0.00 0.00 3.01
3018 4870 9.601971 GTGATACTACGAAAACTAAAATTGCAA 57.398 29.630 0.00 0.00 0.00 4.08
3019 4871 8.995220 AGTGATACTACGAAAACTAAAATTGCA 58.005 29.630 0.00 0.00 0.00 4.08
3028 4880 9.846248 AACGTAAATAGTGATACTACGAAAACT 57.154 29.630 6.91 0.00 38.87 2.66
3030 4882 9.289303 GGAACGTAAATAGTGATACTACGAAAA 57.711 33.333 6.91 0.00 38.87 2.29
3031 4883 8.458052 TGGAACGTAAATAGTGATACTACGAAA 58.542 33.333 6.91 0.00 38.87 3.46
3032 4884 7.984391 TGGAACGTAAATAGTGATACTACGAA 58.016 34.615 6.91 0.00 38.87 3.85
3033 4885 7.552458 TGGAACGTAAATAGTGATACTACGA 57.448 36.000 6.91 0.00 38.87 3.43
3034 4886 9.539139 CTATGGAACGTAAATAGTGATACTACG 57.461 37.037 0.00 0.00 40.78 3.51
3041 4893 9.309516 GTGATTTCTATGGAACGTAAATAGTGA 57.690 33.333 10.26 3.82 0.00 3.41
3042 4894 9.093970 TGTGATTTCTATGGAACGTAAATAGTG 57.906 33.333 10.26 0.00 0.00 2.74
3043 4895 9.832445 ATGTGATTTCTATGGAACGTAAATAGT 57.168 29.630 10.26 0.00 0.00 2.12
3047 4899 9.825109 TGATATGTGATTTCTATGGAACGTAAA 57.175 29.630 0.00 0.00 0.00 2.01
3048 4900 9.996554 ATGATATGTGATTTCTATGGAACGTAA 57.003 29.630 0.00 0.00 0.00 3.18
3049 4901 9.639601 GATGATATGTGATTTCTATGGAACGTA 57.360 33.333 0.00 0.00 0.00 3.57
3050 4902 7.329471 CGATGATATGTGATTTCTATGGAACGT 59.671 37.037 0.00 0.00 0.00 3.99
3051 4903 7.542130 TCGATGATATGTGATTTCTATGGAACG 59.458 37.037 0.00 0.00 0.00 3.95
3052 4904 8.763049 TCGATGATATGTGATTTCTATGGAAC 57.237 34.615 0.00 0.00 0.00 3.62
3053 4905 9.777297 TTTCGATGATATGTGATTTCTATGGAA 57.223 29.630 0.00 0.00 0.00 3.53
3054 4906 9.948964 ATTTCGATGATATGTGATTTCTATGGA 57.051 29.630 0.00 0.00 0.00 3.41
3055 4907 9.983804 CATTTCGATGATATGTGATTTCTATGG 57.016 33.333 0.00 0.00 0.00 2.74
3061 4913 9.616634 GCAATACATTTCGATGATATGTGATTT 57.383 29.630 11.51 2.90 35.63 2.17
3062 4914 8.785946 TGCAATACATTTCGATGATATGTGATT 58.214 29.630 11.51 6.35 35.63 2.57
3063 4915 8.326680 TGCAATACATTTCGATGATATGTGAT 57.673 30.769 11.51 0.68 35.63 3.06
3064 4916 7.727331 TGCAATACATTTCGATGATATGTGA 57.273 32.000 11.51 0.21 35.63 3.58
3065 4917 8.785468 TTTGCAATACATTTCGATGATATGTG 57.215 30.769 0.00 0.00 35.63 3.21
3070 4922 9.630098 GGAATATTTGCAATACATTTCGATGAT 57.370 29.630 0.00 0.00 0.00 2.45
3071 4923 8.081633 GGGAATATTTGCAATACATTTCGATGA 58.918 33.333 0.00 0.00 0.00 2.92
3072 4924 7.060979 CGGGAATATTTGCAATACATTTCGATG 59.939 37.037 0.00 0.00 0.00 3.84
3073 4925 7.083858 CGGGAATATTTGCAATACATTTCGAT 58.916 34.615 0.00 0.00 0.00 3.59
3074 4926 6.434596 CGGGAATATTTGCAATACATTTCGA 58.565 36.000 0.00 0.00 0.00 3.71
3075 4927 5.116983 GCGGGAATATTTGCAATACATTTCG 59.883 40.000 0.00 9.37 0.00 3.46
3076 4928 5.982516 TGCGGGAATATTTGCAATACATTTC 59.017 36.000 0.00 0.00 33.80 2.17
3077 4929 5.911752 TGCGGGAATATTTGCAATACATTT 58.088 33.333 0.00 0.00 33.80 2.32
3078 4930 5.528043 TGCGGGAATATTTGCAATACATT 57.472 34.783 0.00 0.00 33.80 2.71
3079 4931 5.528043 TTGCGGGAATATTTGCAATACAT 57.472 34.783 15.46 0.00 41.95 2.29
3080 4932 4.991153 TTGCGGGAATATTTGCAATACA 57.009 36.364 15.46 0.00 41.95 2.29
3084 4936 3.321497 GTTGTTGCGGGAATATTTGCAA 58.679 40.909 15.46 15.46 44.34 4.08
3085 4937 2.669670 CGTTGTTGCGGGAATATTTGCA 60.670 45.455 6.81 6.81 35.15 4.08
3086 4938 1.917303 CGTTGTTGCGGGAATATTTGC 59.083 47.619 0.00 0.00 0.00 3.68
3087 4939 2.914214 CACGTTGTTGCGGGAATATTTG 59.086 45.455 0.00 0.00 37.48 2.32
3088 4940 2.669950 GCACGTTGTTGCGGGAATATTT 60.670 45.455 0.00 0.00 37.48 1.40
3089 4941 1.135517 GCACGTTGTTGCGGGAATATT 60.136 47.619 0.00 0.00 37.48 1.28
3090 4942 0.450184 GCACGTTGTTGCGGGAATAT 59.550 50.000 0.00 0.00 37.48 1.28
3091 4943 1.870383 GCACGTTGTTGCGGGAATA 59.130 52.632 0.00 0.00 37.48 1.75
3092 4944 2.642700 GCACGTTGTTGCGGGAAT 59.357 55.556 0.00 0.00 37.48 3.01
3098 4950 2.248274 GATACCCCGCACGTTGTTGC 62.248 60.000 0.00 0.00 39.28 4.17
3099 4951 0.951525 TGATACCCCGCACGTTGTTG 60.952 55.000 0.00 0.00 0.00 3.33
3100 4952 0.035820 ATGATACCCCGCACGTTGTT 60.036 50.000 0.00 0.00 0.00 2.83
3101 4953 0.461339 GATGATACCCCGCACGTTGT 60.461 55.000 0.00 0.00 0.00 3.32
3102 4954 0.179084 AGATGATACCCCGCACGTTG 60.179 55.000 0.00 0.00 0.00 4.10
3103 4955 1.340248 CTAGATGATACCCCGCACGTT 59.660 52.381 0.00 0.00 0.00 3.99
3104 4956 0.959553 CTAGATGATACCCCGCACGT 59.040 55.000 0.00 0.00 0.00 4.49
3105 4957 0.959553 ACTAGATGATACCCCGCACG 59.040 55.000 0.00 0.00 0.00 5.34
3106 4958 3.573110 ACTAACTAGATGATACCCCGCAC 59.427 47.826 0.00 0.00 0.00 5.34
3107 4959 3.840991 ACTAACTAGATGATACCCCGCA 58.159 45.455 0.00 0.00 0.00 5.69
3108 4960 6.827762 ACTATACTAACTAGATGATACCCCGC 59.172 42.308 0.00 0.00 0.00 6.13
3109 4961 9.545105 CTACTATACTAACTAGATGATACCCCG 57.455 40.741 0.00 0.00 0.00 5.73
3110 4962 9.850198 CCTACTATACTAACTAGATGATACCCC 57.150 40.741 0.00 0.00 0.00 4.95
3119 4971 9.624373 CCAGTTGTTCCTACTATACTAACTAGA 57.376 37.037 0.00 0.00 0.00 2.43
3120 4972 9.624373 TCCAGTTGTTCCTACTATACTAACTAG 57.376 37.037 0.00 0.00 0.00 2.57
3122 4974 8.915036 CATCCAGTTGTTCCTACTATACTAACT 58.085 37.037 0.00 0.00 0.00 2.24
3123 4975 8.910944 TCATCCAGTTGTTCCTACTATACTAAC 58.089 37.037 0.00 0.00 0.00 2.34
3124 4976 9.132923 CTCATCCAGTTGTTCCTACTATACTAA 57.867 37.037 0.00 0.00 0.00 2.24
3125 4977 8.280084 ACTCATCCAGTTGTTCCTACTATACTA 58.720 37.037 0.00 0.00 26.56 1.82
3126 4978 7.126733 ACTCATCCAGTTGTTCCTACTATACT 58.873 38.462 0.00 0.00 26.56 2.12
3127 4979 7.068348 TGACTCATCCAGTTGTTCCTACTATAC 59.932 40.741 0.00 0.00 34.41 1.47
3128 4980 7.123383 TGACTCATCCAGTTGTTCCTACTATA 58.877 38.462 0.00 0.00 34.41 1.31
3129 4981 5.958380 TGACTCATCCAGTTGTTCCTACTAT 59.042 40.000 0.00 0.00 34.41 2.12
3138 4990 4.521146 GGAATCATGACTCATCCAGTTGT 58.479 43.478 6.49 0.00 34.41 3.32
3164 5033 5.437946 TCTCGATCTAGCTCTTGTTTCCTA 58.562 41.667 0.00 0.00 0.00 2.94
3535 7102 3.118149 TGTGATATGCATGCAAGGTCTCT 60.118 43.478 26.68 8.86 0.00 3.10
3564 7194 2.857618 TCAAAACACAACACGTTGCTC 58.142 42.857 9.79 0.00 44.03 4.26
3725 7355 0.250234 CCATGTCGAAGAAGCCCTCA 59.750 55.000 0.00 0.00 39.69 3.86
3798 7428 2.432628 GAGGACCACGCCGTTCTG 60.433 66.667 0.00 0.00 0.00 3.02
3887 7517 2.436109 GGCTTTGGCAGGACCTCA 59.564 61.111 0.00 0.00 40.87 3.86
3994 7633 1.920574 ACTTCAGCGTCGATCGATTTG 59.079 47.619 22.50 18.43 42.86 2.32
3995 7634 1.920574 CACTTCAGCGTCGATCGATTT 59.079 47.619 22.50 7.12 42.86 2.17
4012 7659 4.317488 CCACTGCCAAAATAAATTGCACT 58.683 39.130 0.00 0.00 0.00 4.40
4230 7883 4.819761 GAGATGCAGTGGCGGCGA 62.820 66.667 12.98 0.00 45.35 5.54
4459 8405 6.675413 AAGAATGTATTATACGGGGCTACA 57.325 37.500 0.00 0.00 0.00 2.74
4513 8462 6.823182 CGATGGATATTATTAGCCACCAATGA 59.177 38.462 3.84 0.00 46.22 2.57
4570 8521 0.684535 TCACAAGAGGACCGCAATGA 59.315 50.000 7.80 0.97 0.00 2.57
4579 8530 3.849911 CATAGAAACGCTCACAAGAGGA 58.150 45.455 0.00 0.00 42.33 3.71
4722 8676 2.619646 GCGTTGTACCTTTTCCAAAGGA 59.380 45.455 19.96 0.00 39.81 3.36
4778 8750 0.325671 CAGGAGGCCTTGAGGGTAGA 60.326 60.000 6.77 0.00 37.43 2.59
4812 8784 3.864686 CAAACCATCCGCGCGAGG 61.865 66.667 34.63 29.69 0.00 4.63
4841 8813 3.827876 AGCCAAACATCAATGTGATCACA 59.172 39.130 29.67 29.67 46.44 3.58
4843 8815 3.367600 GCAGCCAAACATCAATGTGATCA 60.368 43.478 0.00 0.00 41.61 2.92
4876 8848 0.348730 TCATAGGGTTGGGATGGGGA 59.651 55.000 0.00 0.00 0.00 4.81
4907 8879 1.818060 TCAATGCCAGTATGCGCTTTT 59.182 42.857 9.73 0.00 34.12 2.27
4962 8935 1.694696 GGCCCGGATTACTTGAGAGAT 59.305 52.381 0.73 0.00 0.00 2.75
4990 8965 5.013183 ACAAATTCTAGAAGGCTGTGGTAGT 59.987 40.000 11.53 0.00 0.00 2.73
5004 8979 9.764363 TGCCTATACTTCATGTACAAATTCTAG 57.236 33.333 0.00 0.00 33.45 2.43
5020 8995 1.404391 CGAGTCCACGTGCCTATACTT 59.596 52.381 10.91 0.00 0.00 2.24
5024 8999 2.005960 GAGCGAGTCCACGTGCCTAT 62.006 60.000 10.91 0.00 35.59 2.57
5153 9128 3.183574 CGACAACTATTTCGTGTGCAAGA 59.816 43.478 0.00 0.00 0.00 3.02
5181 9156 1.264295 GTATCCGGGATAGGGTGGTC 58.736 60.000 16.97 0.20 0.00 4.02
5205 9180 3.264193 TCCAGATGGCTAGACATGTGTTT 59.736 43.478 28.61 0.49 39.67 2.83
5259 10778 1.218047 CTTCGAATCCGCTGACCCA 59.782 57.895 0.00 0.00 35.37 4.51
5271 10790 0.609957 TCAGGCGGGACTACTTCGAA 60.610 55.000 0.00 0.00 0.00 3.71
5288 10808 1.759445 GAGAGGAGCATTGCCTACTCA 59.241 52.381 20.12 0.00 43.88 3.41
5301 10821 3.708631 ACAGAGAGAGAGAGAGAGAGGAG 59.291 52.174 0.00 0.00 0.00 3.69
5302 10822 3.452264 CACAGAGAGAGAGAGAGAGAGGA 59.548 52.174 0.00 0.00 0.00 3.71
5303 10823 3.198635 ACACAGAGAGAGAGAGAGAGAGG 59.801 52.174 0.00 0.00 0.00 3.69
5304 10824 4.186926 CACACAGAGAGAGAGAGAGAGAG 58.813 52.174 0.00 0.00 0.00 3.20
5305 10825 3.582647 ACACACAGAGAGAGAGAGAGAGA 59.417 47.826 0.00 0.00 0.00 3.10
5342 10862 1.962412 CAACACACACACACACACAC 58.038 50.000 0.00 0.00 0.00 3.82
5343 10863 0.239613 GCAACACACACACACACACA 59.760 50.000 0.00 0.00 0.00 3.72
5344 10864 0.792729 CGCAACACACACACACACAC 60.793 55.000 0.00 0.00 0.00 3.82
5345 10865 0.951040 TCGCAACACACACACACACA 60.951 50.000 0.00 0.00 0.00 3.72
5346 10866 0.376852 ATCGCAACACACACACACAC 59.623 50.000 0.00 0.00 0.00 3.82
5347 10867 1.063321 GAATCGCAACACACACACACA 59.937 47.619 0.00 0.00 0.00 3.72
5348 10868 1.063321 TGAATCGCAACACACACACAC 59.937 47.619 0.00 0.00 0.00 3.82
5349 10869 1.373570 TGAATCGCAACACACACACA 58.626 45.000 0.00 0.00 0.00 3.72
5350 10870 2.466870 TTGAATCGCAACACACACAC 57.533 45.000 0.00 0.00 0.00 3.82
5391 10911 2.268920 GCGATGTTCAGGGGCTCA 59.731 61.111 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.