Multiple sequence alignment - TraesCS4A01G006100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G006100 chr4A 100.000 2822 0 0 1 2822 3797951 3800772 0.000000e+00 5212.0
1 TraesCS4A01G006100 chr4D 87.066 2018 227 21 2 2006 467226635 467224639 0.000000e+00 2250.0
2 TraesCS4A01G006100 chr4D 84.632 924 122 12 2 914 467227298 467226384 0.000000e+00 902.0
3 TraesCS4A01G006100 chr4D 79.634 766 118 23 169 914 467228429 467227682 1.500000e-142 516.0
4 TraesCS4A01G006100 chr4D 86.029 408 48 9 508 911 467227452 467227050 2.010000e-116 429.0
5 TraesCS4A01G006100 chr4D 83.628 452 54 10 1 437 467227931 467227485 9.410000e-110 407.0
6 TraesCS4A01G006100 chr4B 86.352 2037 240 24 2 2024 585025467 585023455 0.000000e+00 2187.0
7 TraesCS4A01G006100 chr4B 83.640 923 130 14 2 914 585026784 585025873 0.000000e+00 848.0
8 TraesCS4A01G006100 chr4B 83.189 922 133 14 2 914 585026124 585025216 0.000000e+00 824.0
9 TraesCS4A01G006100 chr4B 84.160 625 79 16 293 911 585027147 585026537 3.130000e-164 588.0
10 TraesCS4A01G006100 chr4B 76.670 943 166 33 2 915 585028224 585027307 9.150000e-130 473.0
11 TraesCS4A01G006100 chr4B 78.686 624 90 16 2235 2822 585022924 585022308 2.650000e-100 375.0
12 TraesCS4A01G006100 chr1A 79.070 301 49 13 1072 1365 394250296 394250589 7.980000e-46 195.0
13 TraesCS4A01G006100 chr1B 78.405 301 51 12 1072 1365 423944288 423944581 1.730000e-42 183.0
14 TraesCS4A01G006100 chr1D 78.571 294 49 13 1072 1358 313849850 313850136 6.210000e-42 182.0
15 TraesCS4A01G006100 chr5D 75.725 276 52 7 2365 2626 230478047 230478321 1.060000e-24 124.0
16 TraesCS4A01G006100 chr5B 100.000 29 0 0 2769 2797 532586051 532586023 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G006100 chr4A 3797951 3800772 2821 False 5212.0 5212 100.000000 1 2822 1 chr4A.!!$F1 2821
1 TraesCS4A01G006100 chr4D 467224639 467228429 3790 True 900.8 2250 84.197800 1 2006 5 chr4D.!!$R1 2005
2 TraesCS4A01G006100 chr4B 585022308 585028224 5916 True 882.5 2187 82.116167 2 2822 6 chr4B.!!$R1 2820

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
993 3759 0.034059 GTCACCACCACTCCTCTGTG 59.966 60.0 0.0 0.0 37.66 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2747 5884 0.031111 TGGATCGGAGATTGGGAGGT 60.031 55.0 0.0 0.0 45.12 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 695 9.146586 GATTAGATAGATGGATCCTATGCTCTT 57.853 37.037 14.23 0.00 0.00 2.85
31 696 8.532186 TTAGATAGATGGATCCTATGCTCTTC 57.468 38.462 14.23 6.06 0.00 2.87
32 697 6.744822 AGATAGATGGATCCTATGCTCTTCT 58.255 40.000 14.23 7.91 0.00 2.85
39 707 0.835941 CCTATGCTCTTCTGCTGGGT 59.164 55.000 0.00 0.00 0.00 4.51
53 721 2.672996 GGGTTGGCATGCACGTCT 60.673 61.111 21.36 0.00 0.00 4.18
55 723 1.644786 GGGTTGGCATGCACGTCTAC 61.645 60.000 21.36 8.74 0.00 2.59
59 727 2.106683 GGCATGCACGTCTACCCAC 61.107 63.158 21.36 0.00 0.00 4.61
62 730 1.808411 CATGCACGTCTACCCACTTT 58.192 50.000 0.00 0.00 0.00 2.66
71 739 3.679980 CGTCTACCCACTTTGATCTTGTG 59.320 47.826 0.00 0.53 0.00 3.33
72 740 4.642429 GTCTACCCACTTTGATCTTGTGT 58.358 43.478 0.00 0.00 0.00 3.72
73 741 4.691216 GTCTACCCACTTTGATCTTGTGTC 59.309 45.833 0.00 0.00 0.00 3.67
74 742 2.863809 ACCCACTTTGATCTTGTGTCC 58.136 47.619 0.00 0.00 0.00 4.02
75 743 1.806542 CCCACTTTGATCTTGTGTCCG 59.193 52.381 0.00 0.00 0.00 4.79
77 745 2.146342 CACTTTGATCTTGTGTCCGCT 58.854 47.619 0.00 0.00 0.00 5.52
84 754 1.205064 CTTGTGTCCGCTTTCGCTG 59.795 57.895 0.00 0.00 0.00 5.18
85 755 1.221466 CTTGTGTCCGCTTTCGCTGA 61.221 55.000 0.00 0.00 0.00 4.26
95 765 1.372087 CTTTCGCTGACAGGGATGCC 61.372 60.000 21.49 0.00 37.03 4.40
98 768 1.377725 CGCTGACAGGGATGCCTTT 60.378 57.895 14.07 0.00 0.00 3.11
99 769 1.651240 CGCTGACAGGGATGCCTTTG 61.651 60.000 14.07 0.00 0.00 2.77
102 772 0.609957 TGACAGGGATGCCTTTGCTG 60.610 55.000 1.40 0.00 38.71 4.41
107 777 2.575461 GATGCCTTTGCTGCACCC 59.425 61.111 0.00 0.00 42.38 4.61
120 790 2.782222 GCACCCTGGCATGCATCTG 61.782 63.158 21.36 7.49 41.65 2.90
121 791 1.379443 CACCCTGGCATGCATCTGT 60.379 57.895 21.36 8.18 0.00 3.41
136 806 2.346766 TCTGTTGCTTGTCATGGTGT 57.653 45.000 0.00 0.00 0.00 4.16
159 829 4.462483 TGACAAAAGAAGCAGACACCTTTT 59.538 37.500 0.00 0.00 38.81 2.27
213 885 1.653667 TGCAATGCAGACAACACCG 59.346 52.632 2.72 0.00 33.32 4.94
214 886 1.730547 GCAATGCAGACAACACCGC 60.731 57.895 0.00 0.00 0.00 5.68
223 895 3.893763 CAACACCGCCCGCAACAA 61.894 61.111 0.00 0.00 0.00 2.83
252 924 0.930310 CACAACACACACTCACGGAG 59.070 55.000 0.03 0.03 35.52 4.63
265 937 4.024048 CACTCACGGAGCATGTTTACTTTT 60.024 41.667 0.00 0.00 32.04 2.27
273 947 7.081349 CGGAGCATGTTTACTTTTAATGTTGA 58.919 34.615 0.00 0.00 0.00 3.18
336 1126 8.146412 TGTTAAGTAGGTTGAAGTTCTTCCTAC 58.854 37.037 28.92 28.92 46.19 3.18
422 1875 1.202486 TGGGAATACGATTCTCGCCAC 60.202 52.381 0.00 0.00 45.12 5.01
430 1883 0.652592 GATTCTCGCCACGGTTCATG 59.347 55.000 0.00 0.00 0.00 3.07
436 1889 1.686587 TCGCCACGGTTCATGATCTAT 59.313 47.619 0.00 0.00 0.00 1.98
437 1890 2.888414 TCGCCACGGTTCATGATCTATA 59.112 45.455 0.00 0.00 0.00 1.31
438 1891 3.509967 TCGCCACGGTTCATGATCTATAT 59.490 43.478 0.00 0.00 0.00 0.86
439 1892 4.703093 TCGCCACGGTTCATGATCTATATA 59.297 41.667 0.00 0.00 0.00 0.86
447 1900 8.035394 ACGGTTCATGATCTATATATCAACACC 58.965 37.037 5.03 9.54 39.25 4.16
449 1902 7.492669 GGTTCATGATCTATATATCAACACCGG 59.507 40.741 0.00 0.00 39.25 5.28
467 1920 7.527568 ACACCGGAATAAAAGGAAACAATAA 57.472 32.000 9.46 0.00 0.00 1.40
487 2598 1.195115 GATAGTGTGTGGCAGAGGGA 58.805 55.000 0.00 0.00 0.00 4.20
498 2609 2.848694 TGGCAGAGGGATCATTCTTCTT 59.151 45.455 0.00 0.00 0.00 2.52
506 2617 8.322828 CAGAGGGATCATTCTTCTTCATATGAT 58.677 37.037 6.17 0.00 39.68 2.45
516 2627 8.687292 TTCTTCTTCATATGATCCTCCAAATG 57.313 34.615 6.17 0.00 0.00 2.32
534 2645 2.583024 TGAATGATGCAAGTGGGACA 57.417 45.000 0.00 0.00 0.00 4.02
566 2677 7.093945 ACGGACAATTCCAAAATACAAGCTTAT 60.094 33.333 0.00 0.00 43.00 1.73
569 2680 9.423061 GACAATTCCAAAATACAAGCTTATTGT 57.577 29.630 13.81 13.81 35.79 2.71
602 2713 1.876156 CAAGTGGTGAACAAGAGGAGC 59.124 52.381 0.00 0.00 0.00 4.70
622 2733 0.981183 TTCACACGGGATAAGCAGGT 59.019 50.000 0.00 0.00 0.00 4.00
624 2735 0.249120 CACACGGGATAAGCAGGTCA 59.751 55.000 0.00 0.00 0.00 4.02
634 2745 4.030452 GCAGGTCACCGCTTGCAC 62.030 66.667 1.64 0.00 36.59 4.57
637 2748 4.643387 GGTCACCGCTTGCACCCT 62.643 66.667 0.00 0.00 0.00 4.34
652 2764 4.985538 TGCACCCTTCTTCAATCTAAAGT 58.014 39.130 0.00 0.00 0.00 2.66
697 2809 6.193504 AGATGGATCATATGCTCTACTGCTA 58.806 40.000 6.52 0.00 0.00 3.49
723 2835 1.364721 CATGCACGTCCATCCGTTTA 58.635 50.000 0.00 0.00 39.45 2.01
727 2839 1.532007 GCACGTCCATCCGTTTAAACA 59.468 47.619 18.07 0.00 39.45 2.83
728 2840 2.031857 GCACGTCCATCCGTTTAAACAA 60.032 45.455 18.07 6.06 39.45 2.83
737 2849 9.052759 GTCCATCCGTTTAAACAATATATGTCT 57.947 33.333 18.07 0.00 42.99 3.41
738 2850 9.051679 TCCATCCGTTTAAACAATATATGTCTG 57.948 33.333 18.07 0.00 42.99 3.51
749 2861 9.507329 AAACAATATATGTCTGTTCTCACTTGT 57.493 29.630 2.52 0.00 42.99 3.16
751 2863 9.587772 ACAATATATGTCTGTTCTCACTTGTAC 57.412 33.333 0.00 0.00 37.96 2.90
765 3531 5.387788 TCACTTGTACTGACACCCTTACTA 58.612 41.667 0.00 0.00 34.48 1.82
781 3547 1.261938 ACTACACCCTGGCGTGCATA 61.262 55.000 13.18 2.04 37.25 3.14
821 3587 3.550030 CGACAAAAGAAACGGATGCCTTT 60.550 43.478 0.00 0.00 0.00 3.11
848 3614 0.678684 TCTAGCCATCCACGTCGACA 60.679 55.000 17.16 0.00 0.00 4.35
851 3617 2.125673 CCATCCACGTCGACACCC 60.126 66.667 17.16 0.00 0.00 4.61
859 3625 3.626924 GTCGACACCCCAGCCACT 61.627 66.667 11.55 0.00 0.00 4.00
877 3643 2.536803 CACTTGCAATGCAGACAACAAC 59.463 45.455 8.31 0.00 40.61 3.32
881 3647 0.311790 CAATGCAGACAACAACGCCT 59.688 50.000 0.00 0.00 0.00 5.52
953 3719 2.010497 CTCGCTATATAGCCAGCTCGA 58.990 52.381 25.48 15.75 46.34 4.04
990 3756 0.833834 CCAGTCACCACCACTCCTCT 60.834 60.000 0.00 0.00 0.00 3.69
993 3759 0.034059 GTCACCACCACTCCTCTGTG 59.966 60.000 0.00 0.00 37.66 3.66
997 3763 0.979665 CCACCACTCCTCTGTGTGAT 59.020 55.000 0.00 0.00 38.04 3.06
1001 3767 3.703556 CACCACTCCTCTGTGTGATAGAT 59.296 47.826 0.00 0.00 38.04 1.98
1002 3768 3.703556 ACCACTCCTCTGTGTGATAGATG 59.296 47.826 0.00 0.00 38.04 2.90
1003 3769 3.956848 CCACTCCTCTGTGTGATAGATGA 59.043 47.826 0.00 0.00 38.04 2.92
1004 3770 4.588106 CCACTCCTCTGTGTGATAGATGAT 59.412 45.833 0.00 0.00 38.04 2.45
1005 3771 5.070180 CCACTCCTCTGTGTGATAGATGATT 59.930 44.000 0.00 0.00 38.04 2.57
1006 3772 6.215121 CACTCCTCTGTGTGATAGATGATTC 58.785 44.000 0.00 0.00 38.04 2.52
1007 3773 5.304101 ACTCCTCTGTGTGATAGATGATTCC 59.696 44.000 0.00 0.00 0.00 3.01
1027 3793 3.118454 CCGTTGCTTGCGTCGGAT 61.118 61.111 18.01 0.00 44.86 4.18
1239 4005 2.046023 CAGCATCGCCCCTTCACA 60.046 61.111 0.00 0.00 0.00 3.58
1241 4007 2.045926 GCATCGCCCCTTCACAGT 60.046 61.111 0.00 0.00 0.00 3.55
1251 4017 0.617413 CCTTCACAGTGCAGGAGGAT 59.383 55.000 13.73 0.00 0.00 3.24
1437 4203 2.438795 GCCTCCTCCTCGTCGTCT 60.439 66.667 0.00 0.00 0.00 4.18
1446 4215 2.437895 TCGTCGTCTGGATCGGCT 60.438 61.111 0.00 0.00 0.00 5.52
1448 4217 2.885861 GTCGTCTGGATCGGCTGT 59.114 61.111 0.00 0.00 0.00 4.40
1464 4233 1.279152 CTGTGAGAGCGAAGATGCAG 58.721 55.000 0.00 0.00 37.31 4.41
1468 4237 1.152989 GAGAGCGAAGATGCAGCAGG 61.153 60.000 4.07 0.00 37.31 4.85
1476 4245 0.694771 AGATGCAGCAGGAGGAACAA 59.305 50.000 4.07 0.00 0.00 2.83
1480 4249 0.250467 GCAGCAGGAGGAACAAGTCA 60.250 55.000 0.00 0.00 0.00 3.41
1492 4261 3.820467 GGAACAAGTCATGGTGATGAACA 59.180 43.478 0.00 0.00 40.39 3.18
1495 4264 3.181440 ACAAGTCATGGTGATGAACAGGT 60.181 43.478 0.00 0.00 40.39 4.00
1500 4269 1.003839 GGTGATGAACAGGTCGCCA 60.004 57.895 0.41 0.00 43.01 5.69
1503 4272 1.003839 GATGAACAGGTCGCCACCA 60.004 57.895 2.46 0.00 46.68 4.17
1546 4315 2.236146 ACTGCTGTTATTGATGACCCGA 59.764 45.455 0.00 0.00 0.00 5.14
1556 4325 0.820891 GATGACCCGATGCCAATGCT 60.821 55.000 0.00 0.00 38.71 3.79
1560 4329 1.750018 CCCGATGCCAATGCTGTCA 60.750 57.895 0.00 0.00 38.71 3.58
1566 4335 0.890542 TGCCAATGCTGTCACTGACC 60.891 55.000 6.72 0.00 38.71 4.02
1567 4336 0.607489 GCCAATGCTGTCACTGACCT 60.607 55.000 6.72 0.00 33.53 3.85
1599 4368 3.882326 CCCCAGATGGCCGCAGAT 61.882 66.667 0.00 0.00 0.00 2.90
1601 4370 1.451504 CCCAGATGGCCGCAGATAA 59.548 57.895 0.00 0.00 0.00 1.75
1628 4397 1.881903 GAGGAGGCAAAGGCAAAGGC 61.882 60.000 0.00 0.00 43.71 4.35
1647 4416 1.754226 GCAAAGGAAAAGACACCACCA 59.246 47.619 0.00 0.00 0.00 4.17
1650 4419 0.923358 AGGAAAAGACACCACCACCA 59.077 50.000 0.00 0.00 0.00 4.17
1680 4449 1.447140 GGGCAATGACGTGCGACTA 60.447 57.895 0.00 0.00 45.91 2.59
1692 4461 1.372499 GCGACTAATGGCGGCGATA 60.372 57.895 12.98 0.00 0.00 2.92
1720 4489 1.599576 GTGAGGGAAGAGGTGGAGC 59.400 63.158 0.00 0.00 0.00 4.70
1749 4518 0.037232 GGCAGCTCTTGTACTCGGTT 60.037 55.000 0.00 0.00 0.00 4.44
1789 4558 3.861797 GGGTCGACGGGGCATCAT 61.862 66.667 9.92 0.00 0.00 2.45
1799 4568 1.367471 GGGCATCATCGTCCGATCA 59.633 57.895 0.00 0.00 31.62 2.92
1873 4642 8.154203 TGGTTTTCAGTGTAATCTCTGTCATTA 58.846 33.333 0.00 0.00 36.78 1.90
1874 4643 8.443937 GGTTTTCAGTGTAATCTCTGTCATTAC 58.556 37.037 0.00 0.00 37.27 1.89
1875 4644 9.209175 GTTTTCAGTGTAATCTCTGTCATTACT 57.791 33.333 10.62 0.00 37.53 2.24
1923 4692 8.281531 TCCCCTGTTGAATCATGTATTATCTTT 58.718 33.333 0.00 0.00 0.00 2.52
1924 4693 8.917088 CCCCTGTTGAATCATGTATTATCTTTT 58.083 33.333 0.00 0.00 0.00 2.27
1962 4732 6.801539 AAGTTTCTTGAATATGCAACTCGA 57.198 33.333 0.00 0.00 0.00 4.04
1966 4736 5.330455 TCTTGAATATGCAACTCGAGTCT 57.670 39.130 20.33 6.48 0.00 3.24
1984 4754 0.391130 CTGTCGATTTCTGGCCGGAA 60.391 55.000 23.60 23.60 0.00 4.30
2002 4772 1.248785 AAACGAGGTCGCTAGGAGCA 61.249 55.000 11.39 0.00 45.66 4.26
2012 4783 1.613925 CGCTAGGAGCAACCATAGCTA 59.386 52.381 18.58 0.00 43.58 3.32
2017 4788 1.981495 GGAGCAACCATAGCTAGGGAT 59.019 52.381 30.26 16.73 43.58 3.85
2024 4795 3.591789 ACCATAGCTAGGGATGACACAT 58.408 45.455 30.26 2.60 0.00 3.21
2025 4796 4.752063 ACCATAGCTAGGGATGACACATA 58.248 43.478 30.26 0.00 0.00 2.29
2026 4797 4.774726 ACCATAGCTAGGGATGACACATAG 59.225 45.833 30.26 0.00 0.00 2.23
2027 4798 4.774726 CCATAGCTAGGGATGACACATAGT 59.225 45.833 19.85 0.00 0.00 2.12
2028 4799 5.337089 CCATAGCTAGGGATGACACATAGTG 60.337 48.000 19.85 0.00 39.75 2.74
2030 4801 2.548920 GCTAGGGATGACACATAGTGGC 60.549 54.545 1.93 0.00 42.82 5.01
2040 4811 4.726416 GACACATAGTGGCATTTCTTGTG 58.274 43.478 14.43 14.43 41.94 3.33
2041 4812 4.397420 ACACATAGTGGCATTTCTTGTGA 58.603 39.130 19.61 0.00 37.94 3.58
2042 4813 4.456911 ACACATAGTGGCATTTCTTGTGAG 59.543 41.667 19.61 6.20 37.94 3.51
2064 4853 1.340114 GGGGTCTGAGGTTGATGGTTC 60.340 57.143 0.00 0.00 0.00 3.62
2065 4854 1.351017 GGGTCTGAGGTTGATGGTTCA 59.649 52.381 0.00 0.00 0.00 3.18
2070 4859 3.077359 CTGAGGTTGATGGTTCAGGTTC 58.923 50.000 0.00 0.00 34.76 3.62
2095 4884 4.329545 GGTTGCTGGTGCCCGAGA 62.330 66.667 0.00 0.00 38.71 4.04
2096 4885 2.281484 GTTGCTGGTGCCCGAGAA 60.281 61.111 0.00 0.00 38.71 2.87
2097 4886 2.032528 TTGCTGGTGCCCGAGAAG 59.967 61.111 0.00 0.00 38.71 2.85
2098 4887 2.515979 TTGCTGGTGCCCGAGAAGA 61.516 57.895 0.00 0.00 38.71 2.87
2099 4888 2.125350 GCTGGTGCCCGAGAAGAG 60.125 66.667 0.00 0.00 0.00 2.85
2100 4889 2.581354 CTGGTGCCCGAGAAGAGG 59.419 66.667 0.00 0.00 0.00 3.69
2101 4890 2.203788 TGGTGCCCGAGAAGAGGT 60.204 61.111 0.00 0.00 0.00 3.85
2102 4891 2.266055 GGTGCCCGAGAAGAGGTG 59.734 66.667 0.00 0.00 0.00 4.00
2103 4892 2.584391 GGTGCCCGAGAAGAGGTGT 61.584 63.158 0.00 0.00 0.00 4.16
2104 4893 1.371558 GTGCCCGAGAAGAGGTGTT 59.628 57.895 0.00 0.00 0.00 3.32
2105 4894 0.250338 GTGCCCGAGAAGAGGTGTTT 60.250 55.000 0.00 0.00 0.00 2.83
2106 4895 1.001633 GTGCCCGAGAAGAGGTGTTTA 59.998 52.381 0.00 0.00 0.00 2.01
2107 4896 1.275291 TGCCCGAGAAGAGGTGTTTAG 59.725 52.381 0.00 0.00 0.00 1.85
2108 4897 1.405661 GCCCGAGAAGAGGTGTTTAGG 60.406 57.143 0.00 0.00 0.00 2.69
2109 4898 1.207329 CCCGAGAAGAGGTGTTTAGGG 59.793 57.143 0.00 0.00 0.00 3.53
2110 4899 1.207329 CCGAGAAGAGGTGTTTAGGGG 59.793 57.143 0.00 0.00 0.00 4.79
2111 4900 1.207329 CGAGAAGAGGTGTTTAGGGGG 59.793 57.143 0.00 0.00 0.00 5.40
2112 4901 2.267192 GAGAAGAGGTGTTTAGGGGGT 58.733 52.381 0.00 0.00 0.00 4.95
2113 4902 3.447950 GAGAAGAGGTGTTTAGGGGGTA 58.552 50.000 0.00 0.00 0.00 3.69
2114 4903 3.451540 GAGAAGAGGTGTTTAGGGGGTAG 59.548 52.174 0.00 0.00 0.00 3.18
2115 4904 2.265526 AGAGGTGTTTAGGGGGTAGG 57.734 55.000 0.00 0.00 0.00 3.18
2116 4905 1.210538 GAGGTGTTTAGGGGGTAGGG 58.789 60.000 0.00 0.00 0.00 3.53
2117 4906 0.499610 AGGTGTTTAGGGGGTAGGGT 59.500 55.000 0.00 0.00 0.00 4.34
2118 4907 1.729880 AGGTGTTTAGGGGGTAGGGTA 59.270 52.381 0.00 0.00 0.00 3.69
2119 4908 2.323168 AGGTGTTTAGGGGGTAGGGTAT 59.677 50.000 0.00 0.00 0.00 2.73
2120 4909 3.125656 GGTGTTTAGGGGGTAGGGTATT 58.874 50.000 0.00 0.00 0.00 1.89
2121 4910 3.117776 GGTGTTTAGGGGGTAGGGTATTG 60.118 52.174 0.00 0.00 0.00 1.90
2122 4911 3.781965 GTGTTTAGGGGGTAGGGTATTGA 59.218 47.826 0.00 0.00 0.00 2.57
2123 4912 4.042174 TGTTTAGGGGGTAGGGTATTGAG 58.958 47.826 0.00 0.00 0.00 3.02
2124 4913 3.355857 TTAGGGGGTAGGGTATTGAGG 57.644 52.381 0.00 0.00 0.00 3.86
2125 4914 0.271005 AGGGGGTAGGGTATTGAGGG 59.729 60.000 0.00 0.00 0.00 4.30
2126 4915 0.269782 GGGGGTAGGGTATTGAGGGA 59.730 60.000 0.00 0.00 0.00 4.20
2127 4916 1.132168 GGGGGTAGGGTATTGAGGGAT 60.132 57.143 0.00 0.00 0.00 3.85
2128 4917 1.985895 GGGGTAGGGTATTGAGGGATG 59.014 57.143 0.00 0.00 0.00 3.51
2129 4918 2.699281 GGGGTAGGGTATTGAGGGATGT 60.699 54.545 0.00 0.00 0.00 3.06
2130 4919 2.638363 GGGTAGGGTATTGAGGGATGTC 59.362 54.545 0.00 0.00 0.00 3.06
2131 4920 2.638363 GGTAGGGTATTGAGGGATGTCC 59.362 54.545 0.00 0.00 0.00 4.02
2132 4921 1.424638 AGGGTATTGAGGGATGTCCG 58.575 55.000 0.00 0.00 41.52 4.79
2133 4922 0.396811 GGGTATTGAGGGATGTCCGG 59.603 60.000 0.00 0.00 41.52 5.14
2134 4923 1.129058 GGTATTGAGGGATGTCCGGT 58.871 55.000 0.00 0.00 41.52 5.28
2135 4924 1.202651 GGTATTGAGGGATGTCCGGTG 60.203 57.143 0.00 0.00 41.52 4.94
2136 4925 1.760613 GTATTGAGGGATGTCCGGTGA 59.239 52.381 0.00 0.00 41.52 4.02
2137 4926 0.541863 ATTGAGGGATGTCCGGTGAC 59.458 55.000 0.00 0.00 41.52 3.67
2144 4933 3.625897 TGTCCGGTGACAGGCTGG 61.626 66.667 20.34 0.00 46.40 4.85
2145 4934 3.626924 GTCCGGTGACAGGCTGGT 61.627 66.667 20.34 4.25 41.37 4.00
2146 4935 3.625897 TCCGGTGACAGGCTGGTG 61.626 66.667 20.34 3.21 34.14 4.17
2147 4936 4.704833 CCGGTGACAGGCTGGTGG 62.705 72.222 20.34 8.76 0.00 4.61
2148 4937 3.625897 CGGTGACAGGCTGGTGGA 61.626 66.667 20.34 0.00 0.00 4.02
2149 4938 2.348998 GGTGACAGGCTGGTGGAG 59.651 66.667 20.34 0.00 0.00 3.86
2150 4939 2.348998 GTGACAGGCTGGTGGAGG 59.651 66.667 20.34 0.00 0.00 4.30
2151 4940 2.122413 TGACAGGCTGGTGGAGGT 60.122 61.111 20.34 0.00 0.00 3.85
2152 4941 2.348998 GACAGGCTGGTGGAGGTG 59.651 66.667 20.34 0.00 0.00 4.00
2153 4942 3.252284 ACAGGCTGGTGGAGGTGG 61.252 66.667 20.34 0.00 0.00 4.61
2154 4943 2.930019 CAGGCTGGTGGAGGTGGA 60.930 66.667 6.61 0.00 0.00 4.02
2155 4944 2.608988 AGGCTGGTGGAGGTGGAG 60.609 66.667 0.00 0.00 0.00 3.86
2156 4945 2.607750 GGCTGGTGGAGGTGGAGA 60.608 66.667 0.00 0.00 0.00 3.71
2157 4946 2.665603 GCTGGTGGAGGTGGAGAC 59.334 66.667 0.00 0.00 0.00 3.36
2158 4947 1.915769 GCTGGTGGAGGTGGAGACT 60.916 63.158 0.00 0.00 0.00 3.24
2159 4948 1.484444 GCTGGTGGAGGTGGAGACTT 61.484 60.000 0.00 0.00 0.00 3.01
2160 4949 0.322975 CTGGTGGAGGTGGAGACTTG 59.677 60.000 0.00 0.00 0.00 3.16
2161 4950 1.127567 TGGTGGAGGTGGAGACTTGG 61.128 60.000 0.00 0.00 0.00 3.61
2162 4951 1.679898 GTGGAGGTGGAGACTTGGG 59.320 63.158 0.00 0.00 0.00 4.12
2163 4952 1.538876 TGGAGGTGGAGACTTGGGG 60.539 63.158 0.00 0.00 0.00 4.96
2164 4953 1.229529 GGAGGTGGAGACTTGGGGA 60.230 63.158 0.00 0.00 0.00 4.81
2165 4954 0.840722 GGAGGTGGAGACTTGGGGAA 60.841 60.000 0.00 0.00 0.00 3.97
2166 4955 0.615850 GAGGTGGAGACTTGGGGAAG 59.384 60.000 0.00 0.00 0.00 3.46
2167 4956 0.104409 AGGTGGAGACTTGGGGAAGT 60.104 55.000 0.00 0.00 35.34 3.01
2168 4957 0.036875 GGTGGAGACTTGGGGAAGTG 59.963 60.000 0.00 0.00 32.22 3.16
2169 4958 1.056660 GTGGAGACTTGGGGAAGTGA 58.943 55.000 0.00 0.00 32.22 3.41
2170 4959 1.630878 GTGGAGACTTGGGGAAGTGAT 59.369 52.381 0.00 0.00 32.22 3.06
2171 4960 1.630369 TGGAGACTTGGGGAAGTGATG 59.370 52.381 0.00 0.00 32.22 3.07
2172 4961 1.680249 GGAGACTTGGGGAAGTGATGC 60.680 57.143 0.00 0.00 32.22 3.91
2173 4962 0.036010 AGACTTGGGGAAGTGATGCG 60.036 55.000 0.00 0.00 32.22 4.73
2174 4963 1.002134 ACTTGGGGAAGTGATGCGG 60.002 57.895 0.00 0.00 0.00 5.69
2175 4964 1.002134 CTTGGGGAAGTGATGCGGT 60.002 57.895 0.00 0.00 0.00 5.68
2176 4965 0.609131 CTTGGGGAAGTGATGCGGTT 60.609 55.000 0.00 0.00 0.00 4.44
2177 4966 0.893270 TTGGGGAAGTGATGCGGTTG 60.893 55.000 0.00 0.00 0.00 3.77
2178 4967 2.046285 GGGGAAGTGATGCGGTTGG 61.046 63.158 0.00 0.00 0.00 3.77
2179 4968 1.002624 GGGAAGTGATGCGGTTGGA 60.003 57.895 0.00 0.00 0.00 3.53
2180 4969 1.026718 GGGAAGTGATGCGGTTGGAG 61.027 60.000 0.00 0.00 0.00 3.86
2181 4970 1.026718 GGAAGTGATGCGGTTGGAGG 61.027 60.000 0.00 0.00 0.00 4.30
2182 4971 0.036388 GAAGTGATGCGGTTGGAGGA 60.036 55.000 0.00 0.00 0.00 3.71
2183 4972 0.400213 AAGTGATGCGGTTGGAGGAA 59.600 50.000 0.00 0.00 0.00 3.36
2184 4973 0.036010 AGTGATGCGGTTGGAGGAAG 60.036 55.000 0.00 0.00 0.00 3.46
2192 5295 1.272554 GGTTGGAGGAAGGGGACGAT 61.273 60.000 0.00 0.00 0.00 3.73
2212 5315 4.202020 CGATATGAGGAGGAAGACAAACGA 60.202 45.833 0.00 0.00 0.00 3.85
2215 5318 2.035961 TGAGGAGGAAGACAAACGACAG 59.964 50.000 0.00 0.00 0.00 3.51
2218 5321 0.600255 AGGAAGACAAACGACAGCCG 60.600 55.000 0.00 0.00 45.44 5.52
2227 5330 3.427670 CGACAGCCGTTGGGTTTT 58.572 55.556 0.00 0.00 34.97 2.43
2228 5331 1.731093 CGACAGCCGTTGGGTTTTT 59.269 52.632 0.00 0.00 34.97 1.94
2251 5354 5.224562 TGTTAGATTTTAATCCAACGGCG 57.775 39.130 4.80 4.80 39.06 6.46
2257 5360 2.993449 TTAATCCAACGGCGGAAAAC 57.007 45.000 13.24 0.00 38.95 2.43
2258 5361 1.893544 TAATCCAACGGCGGAAAACA 58.106 45.000 13.24 0.00 38.95 2.83
2262 5365 1.570347 CCAACGGCGGAAAACATCGA 61.570 55.000 13.24 0.00 0.00 3.59
2264 5367 0.601841 AACGGCGGAAAACATCGACT 60.602 50.000 13.24 0.00 31.24 4.18
2268 5371 1.060122 GGCGGAAAACATCGACTAACG 59.940 52.381 0.00 0.00 44.09 3.18
2281 5386 6.647895 ACATCGACTAACGTGATTTTTAAGGT 59.352 34.615 0.00 0.00 43.13 3.50
2283 5388 8.649841 CATCGACTAACGTGATTTTTAAGGTAA 58.350 33.333 0.00 0.00 43.13 2.85
2284 5389 8.761575 TCGACTAACGTGATTTTTAAGGTAAT 57.238 30.769 0.00 0.00 43.13 1.89
2339 5446 1.239347 GCTTCCTCTCAACCAACCAC 58.761 55.000 0.00 0.00 0.00 4.16
2351 5458 1.101049 CCAACCACCTTTGTCGCACT 61.101 55.000 0.00 0.00 0.00 4.40
2385 5501 5.768662 CCATTAGACATGCCTTTCATCAGAT 59.231 40.000 0.00 0.00 31.79 2.90
2396 5512 0.249955 TCATCAGATGGCTCGCAACA 59.750 50.000 10.67 0.00 0.00 3.33
2398 5514 1.063616 CATCAGATGGCTCGCAACAAG 59.936 52.381 1.95 0.00 0.00 3.16
2460 5577 0.385974 CCTTCGAGCGCAACAAAAGG 60.386 55.000 11.47 14.30 0.00 3.11
2461 5578 0.307760 CTTCGAGCGCAACAAAAGGT 59.692 50.000 11.47 0.00 0.00 3.50
2474 5591 1.134965 CAAAAGGTTTGTTGCGGACCA 60.135 47.619 0.00 0.00 35.89 4.02
2486 5603 2.221299 CGGACCAACCAGGGAAGGA 61.221 63.158 7.59 0.00 43.89 3.36
2497 5614 0.623617 AGGGAAGGATAGGGCGGTTT 60.624 55.000 0.00 0.00 0.00 3.27
2501 5618 0.996583 AAGGATAGGGCGGTTTCCAA 59.003 50.000 0.00 0.00 0.00 3.53
2516 5633 2.553962 CCAACATGTGGCGACATCA 58.446 52.632 11.83 0.00 46.14 3.07
2523 5640 0.179076 TGTGGCGACATCATGGCTAG 60.179 55.000 0.00 0.00 46.14 3.42
2526 5643 1.227645 GCGACATCATGGCTAGGCA 60.228 57.895 22.54 22.54 0.00 4.75
2529 5646 0.882042 GACATCATGGCTAGGCACGG 60.882 60.000 22.77 16.64 0.00 4.94
2535 5652 4.785453 GGCTAGGCACGGCAGCTT 62.785 66.667 12.16 0.00 35.60 3.74
2536 5653 2.186903 GCTAGGCACGGCAGCTTA 59.813 61.111 0.00 0.00 32.46 3.09
2537 5654 1.884926 GCTAGGCACGGCAGCTTAG 60.885 63.158 11.98 11.98 44.35 2.18
2564 5681 1.731433 CGGGCGGTTTCGGAGATCTA 61.731 60.000 0.00 0.00 35.04 1.98
2566 5683 0.594284 GGCGGTTTCGGAGATCTACG 60.594 60.000 21.85 21.85 38.52 3.51
2567 5684 0.379669 GCGGTTTCGGAGATCTACGA 59.620 55.000 26.18 26.18 45.38 3.43
2585 5702 1.748493 CGAAGGAGAGAGGAAGGTGAG 59.252 57.143 0.00 0.00 0.00 3.51
2590 5707 2.025321 GGAGAGAGGAAGGTGAGAGAGT 60.025 54.545 0.00 0.00 0.00 3.24
2599 5716 2.004589 AGGTGAGAGAGTAGAAGGGGT 58.995 52.381 0.00 0.00 0.00 4.95
2606 5723 3.028130 GAGAGTAGAAGGGGTGAGAAGG 58.972 54.545 0.00 0.00 0.00 3.46
2608 5725 3.273618 AGAGTAGAAGGGGTGAGAAGGAT 59.726 47.826 0.00 0.00 0.00 3.24
2610 5727 0.915364 AGAAGGGGTGAGAAGGATGC 59.085 55.000 0.00 0.00 0.00 3.91
2612 5729 0.909610 AAGGGGTGAGAAGGATGCGA 60.910 55.000 0.00 0.00 0.00 5.10
2628 5747 2.352032 CGAGGAAGGAGAAGGGCGT 61.352 63.158 0.00 0.00 0.00 5.68
2629 5748 1.219393 GAGGAAGGAGAAGGGCGTG 59.781 63.158 0.00 0.00 0.00 5.34
2633 5752 1.874345 GAAGGAGAAGGGCGTGACGA 61.874 60.000 10.10 0.00 0.00 4.20
2634 5753 1.258445 AAGGAGAAGGGCGTGACGAT 61.258 55.000 10.10 0.00 0.00 3.73
2640 5759 1.884075 AAGGGCGTGACGATGTGCTA 61.884 55.000 10.10 0.00 0.00 3.49
2644 5763 1.140407 GCGTGACGATGTGCTACTCC 61.140 60.000 10.10 0.00 0.00 3.85
2668 5787 2.126071 CTCGCCGACCGACACAAT 60.126 61.111 0.00 0.00 41.89 2.71
2675 5812 1.003839 GACCGACACAATGGGCTCA 60.004 57.895 0.00 0.00 0.00 4.26
2679 5816 1.679944 CCGACACAATGGGCTCAGAAT 60.680 52.381 0.00 0.00 0.00 2.40
2684 5821 1.064166 ACAATGGGCTCAGAATGGGAG 60.064 52.381 0.00 0.00 41.11 4.30
2697 5834 1.351080 ATGGGAGCTCAGGGTGGATG 61.351 60.000 17.19 0.00 0.00 3.51
2704 5841 0.254178 CTCAGGGTGGATGGACTTGG 59.746 60.000 0.00 0.00 0.00 3.61
2711 5848 0.774096 TGGATGGACTTGGGGTTGGA 60.774 55.000 0.00 0.00 0.00 3.53
2714 5851 2.035783 GGACTTGGGGTTGGAGGC 59.964 66.667 0.00 0.00 0.00 4.70
2717 5854 2.359975 CTTGGGGTTGGAGGCGAC 60.360 66.667 0.00 0.00 0.00 5.19
2718 5855 3.172106 TTGGGGTTGGAGGCGACA 61.172 61.111 0.00 0.00 0.00 4.35
2720 5857 2.075355 TTGGGGTTGGAGGCGACAAT 62.075 55.000 0.00 0.00 0.00 2.71
2723 5860 0.394352 GGGTTGGAGGCGACAATGAT 60.394 55.000 0.00 0.00 0.00 2.45
2728 5865 1.210234 TGGAGGCGACAATGATGACAT 59.790 47.619 0.00 0.00 38.50 3.06
2737 5874 2.104792 ACAATGATGACATAGGTCCCCG 59.895 50.000 4.87 0.00 43.65 5.73
2739 5876 2.398754 TGATGACATAGGTCCCCGAT 57.601 50.000 4.87 0.00 43.65 4.18
2740 5877 1.970640 TGATGACATAGGTCCCCGATG 59.029 52.381 4.87 2.31 43.65 3.84
2742 5879 1.371558 GACATAGGTCCCCGATGGC 59.628 63.158 8.02 1.32 40.21 4.40
2744 5881 0.986019 ACATAGGTCCCCGATGGCAA 60.986 55.000 8.02 0.00 40.21 4.52
2746 5883 0.401738 ATAGGTCCCCGATGGCAATG 59.598 55.000 0.00 0.00 0.00 2.82
2747 5884 0.692756 TAGGTCCCCGATGGCAATGA 60.693 55.000 0.00 0.00 0.00 2.57
2753 5890 1.526917 CCGATGGCAATGACCTCCC 60.527 63.158 0.00 0.00 0.00 4.30
2755 5892 0.394216 CGATGGCAATGACCTCCCAA 60.394 55.000 0.00 0.00 0.00 4.12
2760 5897 1.685148 GCAATGACCTCCCAATCTCC 58.315 55.000 0.00 0.00 0.00 3.71
2766 5903 0.031111 ACCTCCCAATCTCCGATCCA 60.031 55.000 0.00 0.00 0.00 3.41
2767 5904 1.356124 CCTCCCAATCTCCGATCCAT 58.644 55.000 0.00 0.00 0.00 3.41
2768 5905 1.002888 CCTCCCAATCTCCGATCCATG 59.997 57.143 0.00 0.00 0.00 3.66
2772 5911 1.426423 CAATCTCCGATCCATGAGCG 58.574 55.000 0.00 0.00 41.31 5.03
2800 5939 3.485711 GCTTTTTGCAACAAAGGTCAAGC 60.486 43.478 23.42 9.94 42.31 4.01
2801 5940 1.919918 TTTGCAACAAAGGTCAAGCG 58.080 45.000 0.00 0.00 0.00 4.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.806448 GAGCATAGGATCCATCTATCTAATCTA 57.194 37.037 15.82 0.00 0.00 1.98
4 5 8.710749 AGAGCATAGGATCCATCTATCTAATC 57.289 38.462 15.82 0.00 0.00 1.75
5 6 9.146586 GAAGAGCATAGGATCCATCTATCTAAT 57.853 37.037 15.82 0.00 0.00 1.73
21 686 2.286872 CAACCCAGCAGAAGAGCATAG 58.713 52.381 0.00 0.00 36.85 2.23
30 695 2.677524 GCATGCCAACCCAGCAGA 60.678 61.111 6.36 0.00 44.90 4.26
31 696 2.992689 TGCATGCCAACCCAGCAG 60.993 61.111 16.68 0.00 44.90 4.24
32 697 3.304721 GTGCATGCCAACCCAGCA 61.305 61.111 16.68 0.00 45.94 4.41
39 707 1.376683 GGGTAGACGTGCATGCCAA 60.377 57.895 16.68 0.00 0.00 4.52
53 721 3.556213 CGGACACAAGATCAAAGTGGGTA 60.556 47.826 14.15 0.00 37.58 3.69
55 723 1.806542 CGGACACAAGATCAAAGTGGG 59.193 52.381 14.15 2.70 37.58 4.61
59 727 3.665323 CGAAAGCGGACACAAGATCAAAG 60.665 47.826 0.00 0.00 0.00 2.77
62 730 1.428448 CGAAAGCGGACACAAGATCA 58.572 50.000 0.00 0.00 0.00 2.92
77 745 1.377202 GGCATCCCTGTCAGCGAAA 60.377 57.895 0.00 0.00 0.00 3.46
84 754 1.941999 GCAGCAAAGGCATCCCTGTC 61.942 60.000 0.00 0.00 41.90 3.51
85 755 1.980772 GCAGCAAAGGCATCCCTGT 60.981 57.895 0.00 0.00 41.90 4.00
95 765 2.280552 ATGCCAGGGTGCAGCAAAG 61.281 57.895 19.06 6.08 45.93 2.77
102 772 2.441532 AGATGCATGCCAGGGTGC 60.442 61.111 16.68 0.00 41.61 5.01
129 799 3.316029 TCTGCTTCTTTTGTCACACCATG 59.684 43.478 0.00 0.00 0.00 3.66
130 800 3.316308 GTCTGCTTCTTTTGTCACACCAT 59.684 43.478 0.00 0.00 0.00 3.55
134 804 2.682856 GGTGTCTGCTTCTTTTGTCACA 59.317 45.455 0.00 0.00 0.00 3.58
136 806 3.281727 AGGTGTCTGCTTCTTTTGTCA 57.718 42.857 0.00 0.00 0.00 3.58
159 829 5.913137 CCAACATGGATGGCTAAAGTAAA 57.087 39.130 6.84 0.00 40.96 2.01
211 883 4.639171 GTGGTTTGTTGCGGGCGG 62.639 66.667 0.00 0.00 0.00 6.13
214 886 3.417275 TTGCGTGGTTTGTTGCGGG 62.417 57.895 0.00 0.00 0.00 6.13
223 895 0.109504 GTGTGTTGTGTTGCGTGGTT 60.110 50.000 0.00 0.00 0.00 3.67
252 924 9.810231 CCAAATCAACATTAAAAGTAAACATGC 57.190 29.630 0.00 0.00 0.00 4.06
324 1114 8.630037 CAAGGTTACAAAATGTAGGAAGAACTT 58.370 33.333 0.00 0.00 33.92 2.66
329 1119 6.640907 GCAACAAGGTTACAAAATGTAGGAAG 59.359 38.462 0.00 0.00 33.92 3.46
330 1120 6.096987 TGCAACAAGGTTACAAAATGTAGGAA 59.903 34.615 0.00 0.00 33.92 3.36
336 1126 6.259608 TGGAAATGCAACAAGGTTACAAAATG 59.740 34.615 0.00 0.00 0.00 2.32
337 1127 6.352516 TGGAAATGCAACAAGGTTACAAAAT 58.647 32.000 0.00 0.00 0.00 1.82
338 1128 5.734720 TGGAAATGCAACAAGGTTACAAAA 58.265 33.333 0.00 0.00 0.00 2.44
385 1176 3.918566 TCCCAAGAGGTCGGTTATATGA 58.081 45.455 0.00 0.00 36.75 2.15
393 1184 1.108776 TCGTATTCCCAAGAGGTCGG 58.891 55.000 0.00 0.00 36.75 4.79
395 1186 4.623002 GAGAATCGTATTCCCAAGAGGTC 58.377 47.826 4.60 0.00 36.75 3.85
422 1875 7.220875 CGGTGTTGATATATAGATCATGAACCG 59.779 40.741 26.88 26.88 42.94 4.44
436 1889 8.895737 GTTTCCTTTTATTCCGGTGTTGATATA 58.104 33.333 0.00 0.00 0.00 0.86
437 1890 7.394923 TGTTTCCTTTTATTCCGGTGTTGATAT 59.605 33.333 0.00 0.00 0.00 1.63
438 1891 6.715718 TGTTTCCTTTTATTCCGGTGTTGATA 59.284 34.615 0.00 0.00 0.00 2.15
439 1892 5.536916 TGTTTCCTTTTATTCCGGTGTTGAT 59.463 36.000 0.00 0.00 0.00 2.57
454 1907 7.309194 GCCACACACTATCTTATTGTTTCCTTT 60.309 37.037 0.00 0.00 0.00 3.11
467 1920 1.198713 CCCTCTGCCACACACTATCT 58.801 55.000 0.00 0.00 0.00 1.98
487 2598 8.215954 TGGAGGATCATATGAAGAAGAATGAT 57.784 34.615 9.99 0.00 40.78 2.45
498 2609 7.122204 GCATCATTCATTTGGAGGATCATATGA 59.878 37.037 8.10 8.10 36.25 2.15
506 2617 4.158949 CACTTGCATCATTCATTTGGAGGA 59.841 41.667 0.00 0.00 0.00 3.71
516 2627 1.747355 CCTGTCCCACTTGCATCATTC 59.253 52.381 0.00 0.00 0.00 2.67
543 2654 9.423061 ACAATAAGCTTGTATTTTGGAATTGTC 57.577 29.630 9.86 0.00 30.30 3.18
573 2684 7.255451 CCTCTTGTTCACCACTTGCTATAAAAA 60.255 37.037 0.00 0.00 0.00 1.94
579 2690 2.703536 TCCTCTTGTTCACCACTTGCTA 59.296 45.455 0.00 0.00 0.00 3.49
583 2694 1.771255 AGCTCCTCTTGTTCACCACTT 59.229 47.619 0.00 0.00 0.00 3.16
602 2713 1.066143 ACCTGCTTATCCCGTGTGAAG 60.066 52.381 0.00 0.00 0.00 3.02
622 2733 2.281484 GAAGGGTGCAAGCGGTGA 60.281 61.111 0.00 0.00 33.03 4.02
624 2735 1.600916 GAAGAAGGGTGCAAGCGGT 60.601 57.895 0.00 0.00 33.03 5.68
691 2803 0.962356 GTGCATGCCAACCTAGCAGT 60.962 55.000 16.68 0.00 44.90 4.40
697 2809 2.672996 GGACGTGCATGCCAACCT 60.673 61.111 16.68 0.00 0.00 3.50
723 2835 9.507329 ACAAGTGAGAACAGACATATATTGTTT 57.493 29.630 3.41 0.00 39.18 2.83
727 2839 9.809096 CAGTACAAGTGAGAACAGACATATATT 57.191 33.333 0.00 0.00 0.00 1.28
728 2840 9.190317 TCAGTACAAGTGAGAACAGACATATAT 57.810 33.333 0.00 0.00 0.00 0.86
737 2849 3.181469 GGGTGTCAGTACAAGTGAGAACA 60.181 47.826 0.00 0.00 37.36 3.18
738 2850 3.069729 AGGGTGTCAGTACAAGTGAGAAC 59.930 47.826 0.00 0.00 37.36 3.01
741 2853 3.753294 AAGGGTGTCAGTACAAGTGAG 57.247 47.619 0.00 0.00 37.36 3.51
744 2856 5.010415 GTGTAGTAAGGGTGTCAGTACAAGT 59.990 44.000 0.00 0.00 37.36 3.16
749 2861 3.076484 AGGGTGTAGTAAGGGTGTCAGTA 59.924 47.826 0.00 0.00 0.00 2.74
751 2863 2.233922 CAGGGTGTAGTAAGGGTGTCAG 59.766 54.545 0.00 0.00 0.00 3.51
765 3531 1.451927 CATATGCACGCCAGGGTGT 60.452 57.895 15.23 5.42 40.08 4.16
781 3547 1.654220 GCACCACGACAAGCAACAT 59.346 52.632 0.00 0.00 0.00 2.71
797 3563 1.334599 GCATCCGTTTCTTTTGTCGCA 60.335 47.619 0.00 0.00 0.00 5.10
821 3587 3.260884 ACGTGGATGGCTAGAAAGAAAGA 59.739 43.478 0.00 0.00 0.00 2.52
848 3614 1.909781 CATTGCAAGTGGCTGGGGT 60.910 57.895 4.94 0.00 45.15 4.95
851 3617 1.080093 CTGCATTGCAAGTGGCTGG 60.080 57.895 13.18 9.53 45.15 4.85
859 3625 1.837648 CGTTGTTGTCTGCATTGCAA 58.162 45.000 13.18 0.00 38.41 4.08
877 3643 3.716006 CGTGGTCTGTTGCAGGCG 61.716 66.667 0.00 0.00 36.90 5.52
881 3647 1.746991 TGTTGCGTGGTCTGTTGCA 60.747 52.632 0.00 0.00 35.15 4.08
990 3756 3.493176 CGGCTGGAATCATCTATCACACA 60.493 47.826 0.00 0.00 0.00 3.72
993 3759 3.393089 ACGGCTGGAATCATCTATCAC 57.607 47.619 0.00 0.00 0.00 3.06
997 3763 1.953559 GCAACGGCTGGAATCATCTA 58.046 50.000 0.00 0.00 36.96 1.98
1056 3822 2.417516 CCCGTCTTGATCGGCGAT 59.582 61.111 24.26 24.26 45.71 4.58
1057 3823 3.833645 CCCCGTCTTGATCGGCGA 61.834 66.667 13.87 13.87 45.71 5.54
1134 3900 2.573869 CTGATCACGCTCCACCGT 59.426 61.111 0.00 0.00 43.11 4.83
1227 3993 3.535629 CTGCACTGTGAAGGGGCGA 62.536 63.158 12.86 0.00 0.00 5.54
1230 3996 1.002868 CTCCTGCACTGTGAAGGGG 60.003 63.158 30.17 25.68 0.00 4.79
1239 4005 1.617018 TAAGCGCATCCTCCTGCACT 61.617 55.000 11.47 0.00 42.40 4.40
1241 4007 0.250038 GATAAGCGCATCCTCCTGCA 60.250 55.000 11.47 0.00 42.40 4.41
1275 4041 1.959226 CCACTTGTTGCCGTAGCGT 60.959 57.895 0.00 0.00 44.31 5.07
1437 4203 2.895680 GCTCTCACAGCCGATCCA 59.104 61.111 0.00 0.00 43.17 3.41
1446 4215 0.738762 GCTGCATCTTCGCTCTCACA 60.739 55.000 0.00 0.00 0.00 3.58
1448 4217 0.459759 CTGCTGCATCTTCGCTCTCA 60.460 55.000 1.31 0.00 0.00 3.27
1455 4224 1.339438 TGTTCCTCCTGCTGCATCTTC 60.339 52.381 1.31 0.00 0.00 2.87
1460 4229 0.250467 GACTTGTTCCTCCTGCTGCA 60.250 55.000 0.88 0.88 0.00 4.41
1464 4233 1.271597 ACCATGACTTGTTCCTCCTGC 60.272 52.381 0.00 0.00 0.00 4.85
1468 4237 3.942829 TCATCACCATGACTTGTTCCTC 58.057 45.455 0.00 0.00 33.80 3.71
1476 4245 2.354103 CGACCTGTTCATCACCATGACT 60.354 50.000 0.00 0.00 38.86 3.41
1480 4249 0.392998 GGCGACCTGTTCATCACCAT 60.393 55.000 0.00 0.00 0.00 3.55
1521 4290 5.186198 GGGTCATCAATAACAGCAGTAACT 58.814 41.667 0.00 0.00 0.00 2.24
1523 4292 4.081365 TCGGGTCATCAATAACAGCAGTAA 60.081 41.667 0.00 0.00 0.00 2.24
1532 4301 3.289407 TTGGCATCGGGTCATCAATAA 57.711 42.857 0.00 0.00 0.00 1.40
1534 4303 1.958579 CATTGGCATCGGGTCATCAAT 59.041 47.619 0.00 0.00 0.00 2.57
1536 4305 1.102809 GCATTGGCATCGGGTCATCA 61.103 55.000 0.00 0.00 40.72 3.07
1546 4315 1.171308 GTCAGTGACAGCATTGGCAT 58.829 50.000 18.54 0.00 46.01 4.40
1556 4325 0.394192 CAGGCTCAAGGTCAGTGACA 59.606 55.000 24.20 3.25 33.68 3.58
1560 4329 2.900106 GCCCAGGCTCAAGGTCAGT 61.900 63.158 0.08 0.00 38.26 3.41
1605 4374 0.037303 TTGCCTTTGCCTCCTCTGAG 59.963 55.000 0.00 0.00 38.42 3.35
1608 4377 0.251519 CCTTTGCCTTTGCCTCCTCT 60.252 55.000 0.00 0.00 36.33 3.69
1628 4397 2.100749 GGTGGTGGTGTCTTTTCCTTTG 59.899 50.000 0.00 0.00 0.00 2.77
1664 4433 1.267532 CCATTAGTCGCACGTCATTGC 60.268 52.381 0.00 0.00 39.28 3.56
1666 4435 1.006832 GCCATTAGTCGCACGTCATT 58.993 50.000 0.00 0.00 0.00 2.57
1671 4440 3.925238 GCCGCCATTAGTCGCACG 61.925 66.667 0.00 0.00 0.00 5.34
1677 4446 1.006571 CCGTATCGCCGCCATTAGT 60.007 57.895 0.00 0.00 0.00 2.24
1680 4449 4.539083 TGCCGTATCGCCGCCATT 62.539 61.111 0.00 0.00 0.00 3.16
1692 4461 4.954118 TCCCTCACCACCTGCCGT 62.954 66.667 0.00 0.00 0.00 5.68
1699 4468 0.836400 TCCACCTCTTCCCTCACCAC 60.836 60.000 0.00 0.00 0.00 4.16
1775 4544 3.133767 GACGATGATGCCCCGTCGA 62.134 63.158 19.48 0.00 45.52 4.20
1783 4552 0.946221 GGGTGATCGGACGATGATGC 60.946 60.000 12.40 0.00 34.60 3.91
1788 4557 1.261938 TGGTTGGGTGATCGGACGAT 61.262 55.000 6.95 6.95 37.59 3.73
1789 4558 1.473497 TTGGTTGGGTGATCGGACGA 61.473 55.000 0.00 0.00 0.00 4.20
1799 4568 4.906537 GGTGGCCGTTGGTTGGGT 62.907 66.667 0.00 0.00 0.00 4.51
1832 4601 8.659491 CACTGAAAACCATCCATATATGATACG 58.341 37.037 14.54 1.86 0.00 3.06
1833 4602 9.507329 ACACTGAAAACCATCCATATATGATAC 57.493 33.333 14.54 0.00 0.00 2.24
1873 4642 7.920682 GGAATGTCTTGAAACAACACAAATAGT 59.079 33.333 0.00 0.00 31.81 2.12
1874 4643 7.382218 GGGAATGTCTTGAAACAACACAAATAG 59.618 37.037 0.00 0.00 31.81 1.73
1875 4644 7.206687 GGGAATGTCTTGAAACAACACAAATA 58.793 34.615 0.00 0.00 31.81 1.40
1876 4645 6.048509 GGGAATGTCTTGAAACAACACAAAT 58.951 36.000 0.00 0.00 31.81 2.32
1923 4692 8.740906 TCAAGAAACTTACCATAACAAACACAA 58.259 29.630 0.00 0.00 0.00 3.33
1924 4693 8.282455 TCAAGAAACTTACCATAACAAACACA 57.718 30.769 0.00 0.00 0.00 3.72
1938 4708 7.602644 ACTCGAGTTGCATATTCAAGAAACTTA 59.397 33.333 13.58 0.00 0.00 2.24
1944 4714 5.105063 CAGACTCGAGTTGCATATTCAAGA 58.895 41.667 21.08 0.00 0.00 3.02
1952 4722 0.881796 TCGACAGACTCGAGTTGCAT 59.118 50.000 21.08 5.89 46.75 3.96
1962 4732 0.108615 CGGCCAGAAATCGACAGACT 60.109 55.000 2.24 0.00 0.00 3.24
1966 4736 0.035598 TTTCCGGCCAGAAATCGACA 59.964 50.000 10.19 0.00 30.87 4.35
1984 4754 1.248785 TTGCTCCTAGCGACCTCGTT 61.249 55.000 0.00 0.00 46.26 3.85
1995 4765 2.179204 TCCCTAGCTATGGTTGCTCCTA 59.821 50.000 14.01 0.00 41.46 2.94
2002 4772 3.384168 TGTGTCATCCCTAGCTATGGTT 58.616 45.455 14.01 4.08 0.00 3.67
2006 4776 4.774726 CCACTATGTGTCATCCCTAGCTAT 59.225 45.833 0.00 0.00 0.00 2.97
2007 4777 4.152647 CCACTATGTGTCATCCCTAGCTA 58.847 47.826 0.00 0.00 0.00 3.32
2012 4783 1.583556 TGCCACTATGTGTCATCCCT 58.416 50.000 0.00 0.00 0.00 4.20
2017 4788 4.216042 CACAAGAAATGCCACTATGTGTCA 59.784 41.667 0.00 0.00 33.76 3.58
2024 4795 2.290896 CCCCTCACAAGAAATGCCACTA 60.291 50.000 0.00 0.00 0.00 2.74
2025 4796 1.548582 CCCCTCACAAGAAATGCCACT 60.549 52.381 0.00 0.00 0.00 4.00
2026 4797 0.890683 CCCCTCACAAGAAATGCCAC 59.109 55.000 0.00 0.00 0.00 5.01
2027 4798 0.251742 CCCCCTCACAAGAAATGCCA 60.252 55.000 0.00 0.00 0.00 4.92
2028 4799 2.583472 CCCCCTCACAAGAAATGCC 58.417 57.895 0.00 0.00 0.00 4.40
2059 4848 3.961414 GCCCCGGAACCTGAACCA 61.961 66.667 0.73 0.00 0.00 3.67
2087 4876 1.275291 CTAAACACCTCTTCTCGGGCA 59.725 52.381 0.00 0.00 0.00 5.36
2088 4877 1.405661 CCTAAACACCTCTTCTCGGGC 60.406 57.143 0.00 0.00 0.00 6.13
2089 4878 1.207329 CCCTAAACACCTCTTCTCGGG 59.793 57.143 0.00 0.00 0.00 5.14
2090 4879 1.207329 CCCCTAAACACCTCTTCTCGG 59.793 57.143 0.00 0.00 0.00 4.63
2091 4880 1.207329 CCCCCTAAACACCTCTTCTCG 59.793 57.143 0.00 0.00 0.00 4.04
2092 4881 2.267192 ACCCCCTAAACACCTCTTCTC 58.733 52.381 0.00 0.00 0.00 2.87
2093 4882 2.435203 ACCCCCTAAACACCTCTTCT 57.565 50.000 0.00 0.00 0.00 2.85
2094 4883 2.504585 CCTACCCCCTAAACACCTCTTC 59.495 54.545 0.00 0.00 0.00 2.87
2095 4884 2.558974 CCTACCCCCTAAACACCTCTT 58.441 52.381 0.00 0.00 0.00 2.85
2096 4885 1.274242 CCCTACCCCCTAAACACCTCT 60.274 57.143 0.00 0.00 0.00 3.69
2097 4886 1.210538 CCCTACCCCCTAAACACCTC 58.789 60.000 0.00 0.00 0.00 3.85
2098 4887 0.499610 ACCCTACCCCCTAAACACCT 59.500 55.000 0.00 0.00 0.00 4.00
2099 4888 2.268796 TACCCTACCCCCTAAACACC 57.731 55.000 0.00 0.00 0.00 4.16
2100 4889 3.781965 TCAATACCCTACCCCCTAAACAC 59.218 47.826 0.00 0.00 0.00 3.32
2101 4890 4.042174 CTCAATACCCTACCCCCTAAACA 58.958 47.826 0.00 0.00 0.00 2.83
2102 4891 3.393609 CCTCAATACCCTACCCCCTAAAC 59.606 52.174 0.00 0.00 0.00 2.01
2103 4892 3.636855 CCCTCAATACCCTACCCCCTAAA 60.637 52.174 0.00 0.00 0.00 1.85
2104 4893 2.089811 CCCTCAATACCCTACCCCCTAA 60.090 54.545 0.00 0.00 0.00 2.69
2105 4894 1.510853 CCCTCAATACCCTACCCCCTA 59.489 57.143 0.00 0.00 0.00 3.53
2106 4895 0.271005 CCCTCAATACCCTACCCCCT 59.729 60.000 0.00 0.00 0.00 4.79
2107 4896 0.269782 TCCCTCAATACCCTACCCCC 59.730 60.000 0.00 0.00 0.00 5.40
2108 4897 1.985895 CATCCCTCAATACCCTACCCC 59.014 57.143 0.00 0.00 0.00 4.95
2109 4898 2.638363 GACATCCCTCAATACCCTACCC 59.362 54.545 0.00 0.00 0.00 3.69
2110 4899 2.638363 GGACATCCCTCAATACCCTACC 59.362 54.545 0.00 0.00 0.00 3.18
2111 4900 2.299297 CGGACATCCCTCAATACCCTAC 59.701 54.545 0.00 0.00 0.00 3.18
2112 4901 2.605257 CGGACATCCCTCAATACCCTA 58.395 52.381 0.00 0.00 0.00 3.53
2113 4902 1.424638 CGGACATCCCTCAATACCCT 58.575 55.000 0.00 0.00 0.00 4.34
2114 4903 0.396811 CCGGACATCCCTCAATACCC 59.603 60.000 0.00 0.00 0.00 3.69
2115 4904 1.129058 ACCGGACATCCCTCAATACC 58.871 55.000 9.46 0.00 0.00 2.73
2116 4905 1.760613 TCACCGGACATCCCTCAATAC 59.239 52.381 9.46 0.00 0.00 1.89
2117 4906 1.760613 GTCACCGGACATCCCTCAATA 59.239 52.381 9.46 0.00 43.73 1.90
2118 4907 0.541863 GTCACCGGACATCCCTCAAT 59.458 55.000 9.46 0.00 43.73 2.57
2119 4908 1.980052 GTCACCGGACATCCCTCAA 59.020 57.895 9.46 0.00 43.73 3.02
2120 4909 3.708210 GTCACCGGACATCCCTCA 58.292 61.111 9.46 0.00 43.73 3.86
2128 4917 3.626924 ACCAGCCTGTCACCGGAC 61.627 66.667 9.46 0.00 44.57 4.79
2129 4918 3.625897 CACCAGCCTGTCACCGGA 61.626 66.667 9.46 0.00 0.00 5.14
2130 4919 4.704833 CCACCAGCCTGTCACCGG 62.705 72.222 0.00 0.00 0.00 5.28
2131 4920 3.596066 CTCCACCAGCCTGTCACCG 62.596 68.421 0.00 0.00 0.00 4.94
2132 4921 2.348998 CTCCACCAGCCTGTCACC 59.651 66.667 0.00 0.00 0.00 4.02
2133 4922 2.348998 CCTCCACCAGCCTGTCAC 59.651 66.667 0.00 0.00 0.00 3.67
2134 4923 2.122413 ACCTCCACCAGCCTGTCA 60.122 61.111 0.00 0.00 0.00 3.58
2135 4924 2.348998 CACCTCCACCAGCCTGTC 59.651 66.667 0.00 0.00 0.00 3.51
2136 4925 3.252284 CCACCTCCACCAGCCTGT 61.252 66.667 0.00 0.00 0.00 4.00
2137 4926 2.930019 TCCACCTCCACCAGCCTG 60.930 66.667 0.00 0.00 0.00 4.85
2138 4927 2.608988 CTCCACCTCCACCAGCCT 60.609 66.667 0.00 0.00 0.00 4.58
2139 4928 2.607750 TCTCCACCTCCACCAGCC 60.608 66.667 0.00 0.00 0.00 4.85
2140 4929 1.484444 AAGTCTCCACCTCCACCAGC 61.484 60.000 0.00 0.00 0.00 4.85
2141 4930 0.322975 CAAGTCTCCACCTCCACCAG 59.677 60.000 0.00 0.00 0.00 4.00
2142 4931 1.127567 CCAAGTCTCCACCTCCACCA 61.128 60.000 0.00 0.00 0.00 4.17
2143 4932 1.679898 CCAAGTCTCCACCTCCACC 59.320 63.158 0.00 0.00 0.00 4.61
2144 4933 1.679898 CCCAAGTCTCCACCTCCAC 59.320 63.158 0.00 0.00 0.00 4.02
2145 4934 1.538876 CCCCAAGTCTCCACCTCCA 60.539 63.158 0.00 0.00 0.00 3.86
2146 4935 0.840722 TTCCCCAAGTCTCCACCTCC 60.841 60.000 0.00 0.00 0.00 4.30
2147 4936 0.615850 CTTCCCCAAGTCTCCACCTC 59.384 60.000 0.00 0.00 0.00 3.85
2148 4937 0.104409 ACTTCCCCAAGTCTCCACCT 60.104 55.000 0.00 0.00 38.62 4.00
2149 4938 0.036875 CACTTCCCCAAGTCTCCACC 59.963 60.000 0.00 0.00 41.24 4.61
2150 4939 1.056660 TCACTTCCCCAAGTCTCCAC 58.943 55.000 0.00 0.00 41.24 4.02
2151 4940 1.630369 CATCACTTCCCCAAGTCTCCA 59.370 52.381 0.00 0.00 41.24 3.86
2152 4941 1.680249 GCATCACTTCCCCAAGTCTCC 60.680 57.143 0.00 0.00 41.24 3.71
2153 4942 1.743996 GCATCACTTCCCCAAGTCTC 58.256 55.000 0.00 0.00 41.24 3.36
2154 4943 0.036010 CGCATCACTTCCCCAAGTCT 60.036 55.000 0.00 0.00 41.24 3.24
2155 4944 1.026718 CCGCATCACTTCCCCAAGTC 61.027 60.000 0.00 0.00 41.24 3.01
2156 4945 1.002134 CCGCATCACTTCCCCAAGT 60.002 57.895 0.00 0.00 44.26 3.16
2157 4946 0.609131 AACCGCATCACTTCCCCAAG 60.609 55.000 0.00 0.00 35.50 3.61
2158 4947 0.893270 CAACCGCATCACTTCCCCAA 60.893 55.000 0.00 0.00 0.00 4.12
2159 4948 1.303236 CAACCGCATCACTTCCCCA 60.303 57.895 0.00 0.00 0.00 4.96
2160 4949 2.046285 CCAACCGCATCACTTCCCC 61.046 63.158 0.00 0.00 0.00 4.81
2161 4950 1.002624 TCCAACCGCATCACTTCCC 60.003 57.895 0.00 0.00 0.00 3.97
2162 4951 1.026718 CCTCCAACCGCATCACTTCC 61.027 60.000 0.00 0.00 0.00 3.46
2163 4952 0.036388 TCCTCCAACCGCATCACTTC 60.036 55.000 0.00 0.00 0.00 3.01
2164 4953 0.400213 TTCCTCCAACCGCATCACTT 59.600 50.000 0.00 0.00 0.00 3.16
2165 4954 0.036010 CTTCCTCCAACCGCATCACT 60.036 55.000 0.00 0.00 0.00 3.41
2166 4955 1.026718 CCTTCCTCCAACCGCATCAC 61.027 60.000 0.00 0.00 0.00 3.06
2167 4956 1.299648 CCTTCCTCCAACCGCATCA 59.700 57.895 0.00 0.00 0.00 3.07
2168 4957 1.452108 CCCTTCCTCCAACCGCATC 60.452 63.158 0.00 0.00 0.00 3.91
2169 4958 2.677228 CCCTTCCTCCAACCGCAT 59.323 61.111 0.00 0.00 0.00 4.73
2170 4959 3.646715 CCCCTTCCTCCAACCGCA 61.647 66.667 0.00 0.00 0.00 5.69
2171 4960 3.327404 TCCCCTTCCTCCAACCGC 61.327 66.667 0.00 0.00 0.00 5.68
2172 4961 2.669240 GTCCCCTTCCTCCAACCG 59.331 66.667 0.00 0.00 0.00 4.44
2173 4962 1.272554 ATCGTCCCCTTCCTCCAACC 61.273 60.000 0.00 0.00 0.00 3.77
2174 4963 1.492764 TATCGTCCCCTTCCTCCAAC 58.507 55.000 0.00 0.00 0.00 3.77
2175 4964 2.047061 CATATCGTCCCCTTCCTCCAA 58.953 52.381 0.00 0.00 0.00 3.53
2176 4965 1.219469 TCATATCGTCCCCTTCCTCCA 59.781 52.381 0.00 0.00 0.00 3.86
2177 4966 1.896465 CTCATATCGTCCCCTTCCTCC 59.104 57.143 0.00 0.00 0.00 4.30
2178 4967 1.896465 CCTCATATCGTCCCCTTCCTC 59.104 57.143 0.00 0.00 0.00 3.71
2179 4968 1.503784 TCCTCATATCGTCCCCTTCCT 59.496 52.381 0.00 0.00 0.00 3.36
2180 4969 1.896465 CTCCTCATATCGTCCCCTTCC 59.104 57.143 0.00 0.00 0.00 3.46
2181 4970 1.896465 CCTCCTCATATCGTCCCCTTC 59.104 57.143 0.00 0.00 0.00 3.46
2182 4971 1.503784 TCCTCCTCATATCGTCCCCTT 59.496 52.381 0.00 0.00 0.00 3.95
2183 4972 1.158904 TCCTCCTCATATCGTCCCCT 58.841 55.000 0.00 0.00 0.00 4.79
2184 4973 1.896465 CTTCCTCCTCATATCGTCCCC 59.104 57.143 0.00 0.00 0.00 4.81
2192 5295 3.830178 TGTCGTTTGTCTTCCTCCTCATA 59.170 43.478 0.00 0.00 0.00 2.15
2230 5333 4.333372 TCCGCCGTTGGATTAAAATCTAAC 59.667 41.667 17.30 17.30 46.87 2.34
2231 5334 4.515361 TCCGCCGTTGGATTAAAATCTAA 58.485 39.130 2.91 0.46 34.13 2.10
2232 5335 4.139859 TCCGCCGTTGGATTAAAATCTA 57.860 40.909 2.91 0.00 35.73 1.98
2233 5336 2.993937 TCCGCCGTTGGATTAAAATCT 58.006 42.857 2.91 0.00 35.73 2.40
2234 5337 3.768468 TTCCGCCGTTGGATTAAAATC 57.232 42.857 0.00 0.00 38.00 2.17
2251 5354 5.526010 AATCACGTTAGTCGATGTTTTCC 57.474 39.130 0.00 0.00 42.86 3.13
2257 5360 7.057149 ACCTTAAAAATCACGTTAGTCGATG 57.943 36.000 0.00 0.00 42.86 3.84
2258 5361 8.761575 TTACCTTAAAAATCACGTTAGTCGAT 57.238 30.769 0.00 0.00 42.86 3.59
2304 5409 9.832445 TGAGAGGAAGCGTTTTTAATAAGATAT 57.168 29.630 0.00 0.00 0.00 1.63
2305 5410 9.661563 TTGAGAGGAAGCGTTTTTAATAAGATA 57.338 29.630 0.00 0.00 0.00 1.98
2308 5413 7.021790 GGTTGAGAGGAAGCGTTTTTAATAAG 58.978 38.462 0.00 0.00 0.00 1.73
2310 5415 5.998981 TGGTTGAGAGGAAGCGTTTTTAATA 59.001 36.000 0.00 0.00 0.00 0.98
2311 5416 4.825085 TGGTTGAGAGGAAGCGTTTTTAAT 59.175 37.500 0.00 0.00 0.00 1.40
2313 5418 3.811083 TGGTTGAGAGGAAGCGTTTTTA 58.189 40.909 0.00 0.00 0.00 1.52
2314 5419 2.650322 TGGTTGAGAGGAAGCGTTTTT 58.350 42.857 0.00 0.00 0.00 1.94
2326 5433 2.650322 GACAAAGGTGGTTGGTTGAGA 58.350 47.619 0.00 0.00 32.50 3.27
2339 5446 0.597637 ACGAGACAGTGCGACAAAGG 60.598 55.000 0.00 0.00 0.00 3.11
2396 5512 4.526438 AAAAGCTATCCTATGGTGGCTT 57.474 40.909 0.00 0.00 40.97 4.35
2428 5544 2.154462 CTCGAAGGGATTGCAACAAGT 58.846 47.619 0.00 0.00 0.00 3.16
2445 5562 0.845768 CAAACCTTTTGTTGCGCTCG 59.154 50.000 9.73 0.00 37.23 5.03
2460 5577 0.248866 CTGGTTGGTCCGCAACAAAC 60.249 55.000 6.70 0.00 40.58 2.93
2461 5578 1.388065 CCTGGTTGGTCCGCAACAAA 61.388 55.000 6.70 0.00 39.52 2.83
2469 5586 1.490910 CTATCCTTCCCTGGTTGGTCC 59.509 57.143 0.00 0.00 0.00 4.46
2470 5587 1.490910 CCTATCCTTCCCTGGTTGGTC 59.509 57.143 0.00 0.00 0.00 4.02
2474 5591 1.345715 CGCCCTATCCTTCCCTGGTT 61.346 60.000 0.00 0.00 0.00 3.67
2477 5594 1.345715 AACCGCCCTATCCTTCCCTG 61.346 60.000 0.00 0.00 0.00 4.45
2501 5618 1.378882 GCCATGATGTCGCCACATGT 61.379 55.000 0.20 0.00 43.79 3.21
2511 5628 1.146930 CCGTGCCTAGCCATGATGT 59.853 57.895 0.00 0.00 0.00 3.06
2513 5630 2.111878 GCCGTGCCTAGCCATGAT 59.888 61.111 0.00 0.00 0.00 2.45
2514 5631 3.390183 CTGCCGTGCCTAGCCATGA 62.390 63.158 0.00 0.00 0.00 3.07
2516 5633 4.864334 GCTGCCGTGCCTAGCCAT 62.864 66.667 0.00 0.00 0.00 4.40
2539 5656 3.788766 CGAAACCGCCCGAGCTTG 61.789 66.667 0.00 0.00 36.60 4.01
2543 5660 2.955751 GATCTCCGAAACCGCCCGAG 62.956 65.000 0.00 0.00 0.00 4.63
2544 5661 3.072468 ATCTCCGAAACCGCCCGA 61.072 61.111 0.00 0.00 0.00 5.14
2545 5662 1.731433 TAGATCTCCGAAACCGCCCG 61.731 60.000 0.00 0.00 0.00 6.13
2546 5663 0.249363 GTAGATCTCCGAAACCGCCC 60.249 60.000 0.00 0.00 0.00 6.13
2547 5664 0.594284 CGTAGATCTCCGAAACCGCC 60.594 60.000 0.66 0.00 0.00 6.13
2548 5665 0.379669 TCGTAGATCTCCGAAACCGC 59.620 55.000 8.06 0.00 0.00 5.68
2549 5666 2.541178 CCTTCGTAGATCTCCGAAACCG 60.541 54.545 21.42 11.63 41.93 4.44
2550 5667 2.686915 TCCTTCGTAGATCTCCGAAACC 59.313 50.000 21.42 0.00 41.93 3.27
2564 5681 1.075698 TCACCTTCCTCTCTCCTTCGT 59.924 52.381 0.00 0.00 0.00 3.85
2566 5683 3.023832 CTCTCACCTTCCTCTCTCCTTC 58.976 54.545 0.00 0.00 0.00 3.46
2567 5684 2.652348 TCTCTCACCTTCCTCTCTCCTT 59.348 50.000 0.00 0.00 0.00 3.36
2585 5702 3.028130 CCTTCTCACCCCTTCTACTCTC 58.972 54.545 0.00 0.00 0.00 3.20
2590 5707 2.119495 GCATCCTTCTCACCCCTTCTA 58.881 52.381 0.00 0.00 0.00 2.10
2599 5716 0.826715 CCTTCCTCGCATCCTTCTCA 59.173 55.000 0.00 0.00 0.00 3.27
2606 5723 0.105778 CCCTTCTCCTTCCTCGCATC 59.894 60.000 0.00 0.00 0.00 3.91
2608 5725 2.660064 GCCCTTCTCCTTCCTCGCA 61.660 63.158 0.00 0.00 0.00 5.10
2610 5727 2.352032 ACGCCCTTCTCCTTCCTCG 61.352 63.158 0.00 0.00 0.00 4.63
2612 5729 1.229209 TCACGCCCTTCTCCTTCCT 60.229 57.895 0.00 0.00 0.00 3.36
2655 5774 3.124921 GCCCATTGTGTCGGTCGG 61.125 66.667 0.00 0.00 0.00 4.79
2658 5777 1.003355 CTGAGCCCATTGTGTCGGT 60.003 57.895 0.00 0.00 0.00 4.69
2665 5784 1.688772 CTCCCATTCTGAGCCCATTG 58.311 55.000 0.00 0.00 0.00 2.82
2675 5812 1.277580 CCACCCTGAGCTCCCATTCT 61.278 60.000 12.15 0.00 0.00 2.40
2679 5816 1.997311 CATCCACCCTGAGCTCCCA 60.997 63.158 12.15 0.00 0.00 4.37
2684 5821 0.393537 CAAGTCCATCCACCCTGAGC 60.394 60.000 0.00 0.00 0.00 4.26
2688 5825 1.930656 CCCCAAGTCCATCCACCCT 60.931 63.158 0.00 0.00 0.00 4.34
2697 5834 2.035783 GCCTCCAACCCCAAGTCC 59.964 66.667 0.00 0.00 0.00 3.85
2704 5841 0.394352 ATCATTGTCGCCTCCAACCC 60.394 55.000 0.00 0.00 0.00 4.11
2711 5848 2.435805 ACCTATGTCATCATTGTCGCCT 59.564 45.455 0.00 0.00 35.70 5.52
2714 5851 3.393800 GGGACCTATGTCATCATTGTCG 58.606 50.000 0.41 0.00 43.65 4.35
2737 5874 1.959282 GATTGGGAGGTCATTGCCATC 59.041 52.381 0.00 0.00 38.44 3.51
2739 5876 1.002069 AGATTGGGAGGTCATTGCCA 58.998 50.000 0.00 0.00 36.72 4.92
2740 5877 1.685148 GAGATTGGGAGGTCATTGCC 58.315 55.000 0.00 0.00 0.00 4.52
2742 5879 1.486310 TCGGAGATTGGGAGGTCATTG 59.514 52.381 0.00 0.00 0.00 2.82
2744 5881 1.974236 GATCGGAGATTGGGAGGTCAT 59.026 52.381 0.00 0.00 45.12 3.06
2746 5883 0.682292 GGATCGGAGATTGGGAGGTC 59.318 60.000 0.00 0.00 45.12 3.85
2747 5884 0.031111 TGGATCGGAGATTGGGAGGT 60.031 55.000 0.00 0.00 45.12 3.85
2753 5890 1.426423 CGCTCATGGATCGGAGATTG 58.574 55.000 10.73 0.00 45.12 2.67
2755 5892 0.540597 TCCGCTCATGGATCGGAGAT 60.541 55.000 16.16 0.00 43.82 2.75
2760 5897 1.013005 GCATCTCCGCTCATGGATCG 61.013 60.000 0.00 0.00 37.41 3.69
2766 5903 1.133790 GCAAAAAGCATCTCCGCTCAT 59.866 47.619 0.00 0.00 42.89 2.90
2767 5904 0.523072 GCAAAAAGCATCTCCGCTCA 59.477 50.000 0.00 0.00 42.89 4.26
2768 5905 3.319245 GCAAAAAGCATCTCCGCTC 57.681 52.632 0.00 0.00 42.89 5.03
2797 5936 2.825532 ACCCTTATTGCAATTGTCGCTT 59.174 40.909 18.75 0.00 0.00 4.68
2800 5939 4.701956 AAGACCCTTATTGCAATTGTCG 57.298 40.909 18.75 6.02 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.