Multiple sequence alignment - TraesCS4A01G004700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G004700 chr4A 100.000 4586 0 0 391 4976 3118803 3114218 0.000000e+00 8469.0
1 TraesCS4A01G004700 chr4A 100.000 84 0 0 1 84 3119193 3119110 6.670000e-34 156.0
2 TraesCS4A01G004700 chr4A 73.485 264 57 10 522 782 742292043 742292296 2.470000e-13 87.9
3 TraesCS4A01G004700 chr4D 94.206 4108 158 29 937 4976 468289618 468293713 0.000000e+00 6194.0
4 TraesCS4A01G004700 chr4D 81.301 123 23 0 511 633 10745564 10745686 3.170000e-17 100.0
5 TraesCS4A01G004700 chr4B 94.083 4124 169 30 916 4976 586863159 586867270 0.000000e+00 6194.0
6 TraesCS4A01G004700 chr4B 81.515 330 43 9 510 839 586862837 586863148 6.390000e-64 255.0
7 TraesCS4A01G004700 chr4B 100.000 45 0 0 865 909 490653878 490653922 3.190000e-12 84.2
8 TraesCS4A01G004700 chr7A 83.486 109 18 0 523 631 683505430 683505538 8.810000e-18 102.0
9 TraesCS4A01G004700 chr7A 79.339 121 25 0 510 630 718254719 718254839 8.880000e-13 86.1
10 TraesCS4A01G004700 chr7A 79.310 116 24 0 518 633 442965416 442965531 1.150000e-11 82.4
11 TraesCS4A01G004700 chr5A 82.569 109 19 0 525 633 426733596 426733704 4.100000e-16 97.1
12 TraesCS4A01G004700 chr6B 80.000 125 23 2 510 633 26227179 26227302 1.910000e-14 91.6
13 TraesCS4A01G004700 chr6B 80.328 122 20 1 510 631 207930299 207930416 6.860000e-14 89.8
14 TraesCS4A01G004700 chr6B 100.000 46 0 0 865 910 527580154 527580199 8.880000e-13 86.1
15 TraesCS4A01G004700 chr7B 100.000 46 0 0 865 910 251316110 251316155 8.880000e-13 86.1
16 TraesCS4A01G004700 chr5D 78.626 131 27 1 509 638 77441878 77441748 8.880000e-13 86.1
17 TraesCS4A01G004700 chr5D 94.872 39 1 1 862 899 461875715 461875753 5.380000e-05 60.2
18 TraesCS4A01G004700 chr3B 97.872 47 1 0 863 909 28489203 28489157 1.150000e-11 82.4
19 TraesCS4A01G004700 chr1B 100.000 42 0 0 863 904 622626369 622626410 1.490000e-10 78.7
20 TraesCS4A01G004700 chr5B 100.000 34 0 0 867 900 522489547 522489514 4.160000e-06 63.9
21 TraesCS4A01G004700 chr6A 94.872 39 1 1 862 899 429064256 429064294 5.380000e-05 60.2
22 TraesCS4A01G004700 chr1A 94.872 39 1 1 862 899 465928308 465928346 5.380000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G004700 chr4A 3114218 3119193 4975 True 4312.5 8469 100.000 1 4976 2 chr4A.!!$R1 4975
1 TraesCS4A01G004700 chr4D 468289618 468293713 4095 False 6194.0 6194 94.206 937 4976 1 chr4D.!!$F2 4039
2 TraesCS4A01G004700 chr4B 586862837 586867270 4433 False 3224.5 6194 87.799 510 4976 2 chr4B.!!$F2 4466

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
28 29 0.031994 TTTTCTTTGCTTCGGCTGCC 59.968 50.0 9.11 9.11 42.37 4.85 F
1042 1044 0.037419 CCCAAAATCCCACAAAGCCG 60.037 55.0 0.00 0.00 0.00 5.52 F
1446 1448 0.253610 ACAACTTCACGTTCCCACCA 59.746 50.0 0.00 0.00 32.27 4.17 F
1788 1790 0.936764 CGGTCGGAGATTCAGATGCG 60.937 60.0 0.00 0.00 40.67 4.73 F
2379 2381 0.107361 TCTCTGGATGCAGGCACATG 60.107 55.0 14.84 0.00 0.00 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1443 1445 0.038599 TGCATGCCTTGATGACTGGT 59.961 50.000 16.68 0.0 0.00 4.00 R
2278 2280 0.035317 TCGAGAGCAGTGTGCCATTT 59.965 50.000 0.00 0.0 46.52 2.32 R
2295 2297 0.792640 GCATCCTGCGGAATGTATCG 59.207 55.000 0.00 0.0 34.34 2.92 R
3633 3635 1.221566 CATCCTCGGTGTGATGCCA 59.778 57.895 0.00 0.0 32.71 4.92 R
4263 4292 0.321919 TCCTGGTTGCACTGAGATGC 60.322 55.000 0.00 0.0 46.32 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.784147 GCGTATTCGTTTTCTTTGCTTC 57.216 40.909 0.00 0.00 39.49 3.86
22 23 3.294627 GCGTATTCGTTTTCTTTGCTTCG 59.705 43.478 0.00 0.00 39.49 3.79
23 24 3.838550 CGTATTCGTTTTCTTTGCTTCGG 59.161 43.478 0.00 0.00 0.00 4.30
24 25 2.113910 TTCGTTTTCTTTGCTTCGGC 57.886 45.000 0.00 0.00 42.19 5.54
25 26 1.305201 TCGTTTTCTTTGCTTCGGCT 58.695 45.000 0.00 0.00 42.37 5.52
26 27 1.002900 TCGTTTTCTTTGCTTCGGCTG 60.003 47.619 0.00 0.00 42.37 4.85
27 28 1.131771 GTTTTCTTTGCTTCGGCTGC 58.868 50.000 0.00 0.00 42.37 5.25
28 29 0.031994 TTTTCTTTGCTTCGGCTGCC 59.968 50.000 9.11 9.11 42.37 4.85
29 30 1.106351 TTTCTTTGCTTCGGCTGCCA 61.106 50.000 20.29 2.90 42.37 4.92
30 31 1.518056 TTCTTTGCTTCGGCTGCCAG 61.518 55.000 20.29 10.63 42.37 4.85
31 32 2.985282 TTTGCTTCGGCTGCCAGG 60.985 61.111 20.29 8.73 42.37 4.45
44 45 1.967535 GCCAGGGCAAAACTCTTCC 59.032 57.895 5.20 0.00 41.49 3.46
45 46 1.536073 GCCAGGGCAAAACTCTTCCC 61.536 60.000 5.20 0.00 41.49 3.97
47 48 1.539157 CAGGGCAAAACTCTTCCCTC 58.461 55.000 0.00 0.00 45.63 4.30
48 49 0.405973 AGGGCAAAACTCTTCCCTCC 59.594 55.000 0.00 0.00 45.63 4.30
49 50 0.112412 GGGCAAAACTCTTCCCTCCA 59.888 55.000 0.00 0.00 35.87 3.86
50 51 1.539157 GGCAAAACTCTTCCCTCCAG 58.461 55.000 0.00 0.00 0.00 3.86
51 52 1.539157 GCAAAACTCTTCCCTCCAGG 58.461 55.000 0.00 0.00 0.00 4.45
52 53 1.539157 CAAAACTCTTCCCTCCAGGC 58.461 55.000 0.00 0.00 34.51 4.85
53 54 1.074566 CAAAACTCTTCCCTCCAGGCT 59.925 52.381 0.00 0.00 34.51 4.58
54 55 1.450360 AAACTCTTCCCTCCAGGCTT 58.550 50.000 0.00 0.00 34.51 4.35
55 56 0.988063 AACTCTTCCCTCCAGGCTTC 59.012 55.000 0.00 0.00 34.51 3.86
56 57 0.178891 ACTCTTCCCTCCAGGCTTCA 60.179 55.000 0.00 0.00 34.51 3.02
57 58 0.251634 CTCTTCCCTCCAGGCTTCAC 59.748 60.000 0.00 0.00 34.51 3.18
58 59 1.201429 TCTTCCCTCCAGGCTTCACC 61.201 60.000 0.00 0.00 39.61 4.02
59 60 1.463214 TTCCCTCCAGGCTTCACCA 60.463 57.895 0.00 0.00 43.14 4.17
60 61 1.065410 TTCCCTCCAGGCTTCACCAA 61.065 55.000 0.00 0.00 43.14 3.67
61 62 1.303643 CCCTCCAGGCTTCACCAAC 60.304 63.158 0.00 0.00 43.14 3.77
62 63 1.672356 CCTCCAGGCTTCACCAACG 60.672 63.158 0.00 0.00 43.14 4.10
63 64 1.371183 CTCCAGGCTTCACCAACGA 59.629 57.895 0.00 0.00 43.14 3.85
64 65 0.671781 CTCCAGGCTTCACCAACGAG 60.672 60.000 0.00 0.00 43.14 4.18
65 66 2.328099 CCAGGCTTCACCAACGAGC 61.328 63.158 0.00 0.00 43.14 5.03
69 70 2.755929 GCTTCACCAACGAGCCTAG 58.244 57.895 0.00 0.00 0.00 3.02
70 71 0.246635 GCTTCACCAACGAGCCTAGA 59.753 55.000 0.00 0.00 0.00 2.43
71 72 1.134670 GCTTCACCAACGAGCCTAGAT 60.135 52.381 0.00 0.00 0.00 1.98
72 73 2.678190 GCTTCACCAACGAGCCTAGATT 60.678 50.000 0.00 0.00 0.00 2.40
73 74 2.961526 TCACCAACGAGCCTAGATTC 57.038 50.000 0.00 0.00 0.00 2.52
74 75 1.134367 TCACCAACGAGCCTAGATTCG 59.866 52.381 12.42 12.42 42.26 3.34
75 76 0.179108 ACCAACGAGCCTAGATTCGC 60.179 55.000 13.52 0.00 40.32 4.70
76 77 0.876342 CCAACGAGCCTAGATTCGCC 60.876 60.000 13.52 0.00 40.32 5.54
77 78 0.103208 CAACGAGCCTAGATTCGCCT 59.897 55.000 13.52 1.97 40.32 5.52
78 79 0.386113 AACGAGCCTAGATTCGCCTC 59.614 55.000 13.52 0.14 40.32 4.70
79 80 0.466555 ACGAGCCTAGATTCGCCTCT 60.467 55.000 13.52 0.00 40.32 3.69
80 81 0.239879 CGAGCCTAGATTCGCCTCTC 59.760 60.000 0.00 0.00 0.00 3.20
81 82 0.601057 GAGCCTAGATTCGCCTCTCC 59.399 60.000 0.00 0.00 0.00 3.71
82 83 0.187361 AGCCTAGATTCGCCTCTCCT 59.813 55.000 0.00 0.00 0.00 3.69
83 84 1.425831 AGCCTAGATTCGCCTCTCCTA 59.574 52.381 0.00 0.00 0.00 2.94
417 418 4.729227 TTTTGAGTTTTTCTTTCGGGCT 57.271 36.364 0.00 0.00 0.00 5.19
418 419 3.982576 TTGAGTTTTTCTTTCGGGCTC 57.017 42.857 0.00 0.00 0.00 4.70
419 420 3.208747 TGAGTTTTTCTTTCGGGCTCT 57.791 42.857 0.00 0.00 0.00 4.09
420 421 2.878406 TGAGTTTTTCTTTCGGGCTCTG 59.122 45.455 0.00 0.00 0.00 3.35
421 422 3.139077 GAGTTTTTCTTTCGGGCTCTGA 58.861 45.455 0.00 0.00 0.00 3.27
422 423 3.753797 GAGTTTTTCTTTCGGGCTCTGAT 59.246 43.478 0.00 0.00 0.00 2.90
423 424 3.753797 AGTTTTTCTTTCGGGCTCTGATC 59.246 43.478 0.00 0.00 0.00 2.92
424 425 2.403252 TTTCTTTCGGGCTCTGATCC 57.597 50.000 0.00 0.00 0.00 3.36
425 426 1.573108 TTCTTTCGGGCTCTGATCCT 58.427 50.000 0.00 0.00 0.00 3.24
426 427 1.115467 TCTTTCGGGCTCTGATCCTC 58.885 55.000 0.00 0.00 0.00 3.71
427 428 1.118838 CTTTCGGGCTCTGATCCTCT 58.881 55.000 0.00 0.00 0.00 3.69
428 429 1.484240 CTTTCGGGCTCTGATCCTCTT 59.516 52.381 0.00 0.00 0.00 2.85
429 430 1.115467 TTCGGGCTCTGATCCTCTTC 58.885 55.000 0.00 0.00 0.00 2.87
430 431 1.103987 TCGGGCTCTGATCCTCTTCG 61.104 60.000 0.00 0.00 0.00 3.79
431 432 1.103987 CGGGCTCTGATCCTCTTCGA 61.104 60.000 0.00 0.00 0.00 3.71
432 433 0.673437 GGGCTCTGATCCTCTTCGAG 59.327 60.000 0.00 0.00 0.00 4.04
433 434 1.398692 GGCTCTGATCCTCTTCGAGT 58.601 55.000 0.00 0.00 0.00 4.18
434 435 1.754226 GGCTCTGATCCTCTTCGAGTT 59.246 52.381 0.00 0.00 0.00 3.01
435 436 2.223711 GGCTCTGATCCTCTTCGAGTTC 60.224 54.545 0.00 0.00 0.00 3.01
436 437 2.540769 GCTCTGATCCTCTTCGAGTTCG 60.541 54.545 0.00 0.00 41.45 3.95
437 438 2.017782 TCTGATCCTCTTCGAGTTCGG 58.982 52.381 1.26 0.00 40.29 4.30
438 439 1.066303 CTGATCCTCTTCGAGTTCGGG 59.934 57.143 1.26 0.00 40.29 5.14
439 440 0.249114 GATCCTCTTCGAGTTCGGGC 60.249 60.000 1.26 0.00 40.29 6.13
440 441 0.970937 ATCCTCTTCGAGTTCGGGCA 60.971 55.000 1.26 0.00 40.29 5.36
441 442 1.446272 CCTCTTCGAGTTCGGGCAC 60.446 63.158 1.26 0.00 40.29 5.01
454 455 4.835927 GGCACCTGGACATAGTCG 57.164 61.111 0.00 0.00 32.65 4.18
455 456 2.199117 GGCACCTGGACATAGTCGA 58.801 57.895 0.00 0.00 32.65 4.20
456 457 0.753262 GGCACCTGGACATAGTCGAT 59.247 55.000 0.00 0.00 32.65 3.59
457 458 1.539065 GGCACCTGGACATAGTCGATG 60.539 57.143 0.00 0.00 41.79 3.84
458 459 1.409064 GCACCTGGACATAGTCGATGA 59.591 52.381 0.00 0.00 39.06 2.92
459 460 2.159099 GCACCTGGACATAGTCGATGAA 60.159 50.000 0.00 0.00 39.06 2.57
460 461 3.678806 GCACCTGGACATAGTCGATGAAA 60.679 47.826 0.00 0.00 39.06 2.69
461 462 3.865745 CACCTGGACATAGTCGATGAAAC 59.134 47.826 0.00 0.00 39.06 2.78
462 463 3.769844 ACCTGGACATAGTCGATGAAACT 59.230 43.478 0.00 0.00 39.06 2.66
463 464 4.142138 ACCTGGACATAGTCGATGAAACTC 60.142 45.833 0.00 0.00 39.06 3.01
464 465 4.098654 CCTGGACATAGTCGATGAAACTCT 59.901 45.833 0.00 0.00 39.06 3.24
465 466 4.998788 TGGACATAGTCGATGAAACTCTG 58.001 43.478 0.00 0.00 39.06 3.35
466 467 4.142160 TGGACATAGTCGATGAAACTCTGG 60.142 45.833 0.00 0.00 39.06 3.86
467 468 3.786635 ACATAGTCGATGAAACTCTGGC 58.213 45.455 0.00 0.00 39.06 4.85
468 469 3.195610 ACATAGTCGATGAAACTCTGGCA 59.804 43.478 0.00 0.00 39.06 4.92
469 470 4.141846 ACATAGTCGATGAAACTCTGGCAT 60.142 41.667 0.00 0.00 39.06 4.40
470 471 5.069119 ACATAGTCGATGAAACTCTGGCATA 59.931 40.000 0.00 0.00 39.06 3.14
471 472 4.052159 AGTCGATGAAACTCTGGCATAG 57.948 45.455 0.00 0.00 0.00 2.23
472 473 3.701542 AGTCGATGAAACTCTGGCATAGA 59.298 43.478 6.91 0.00 0.00 1.98
473 474 4.343526 AGTCGATGAAACTCTGGCATAGAT 59.656 41.667 6.91 0.00 34.21 1.98
474 475 5.053145 GTCGATGAAACTCTGGCATAGATT 58.947 41.667 6.91 0.69 34.21 2.40
475 476 5.176590 GTCGATGAAACTCTGGCATAGATTC 59.823 44.000 13.64 13.64 34.21 2.52
476 477 5.069648 TCGATGAAACTCTGGCATAGATTCT 59.930 40.000 18.88 8.60 34.21 2.40
477 478 5.177142 CGATGAAACTCTGGCATAGATTCTG 59.823 44.000 18.88 9.00 34.21 3.02
478 479 4.194640 TGAAACTCTGGCATAGATTCTGC 58.805 43.478 18.88 0.00 38.93 4.26
488 489 5.359716 GCATAGATTCTGCCATCTTCTTG 57.640 43.478 0.00 0.00 35.08 3.02
489 490 4.215827 GCATAGATTCTGCCATCTTCTTGG 59.784 45.833 0.00 0.00 39.94 3.61
490 491 3.294038 AGATTCTGCCATCTTCTTGGG 57.706 47.619 0.00 0.00 37.24 4.12
491 492 2.091994 AGATTCTGCCATCTTCTTGGGG 60.092 50.000 0.00 0.00 37.24 4.96
492 493 0.332632 TTCTGCCATCTTCTTGGGGG 59.667 55.000 0.00 0.00 37.24 5.40
493 494 1.755783 CTGCCATCTTCTTGGGGGC 60.756 63.158 0.00 0.00 44.82 5.80
494 495 2.830370 GCCATCTTCTTGGGGGCG 60.830 66.667 0.00 0.00 37.24 6.13
495 496 2.124151 CCATCTTCTTGGGGGCGG 60.124 66.667 0.00 0.00 32.80 6.13
496 497 2.830370 CATCTTCTTGGGGGCGGC 60.830 66.667 0.00 0.00 0.00 6.53
497 498 4.489771 ATCTTCTTGGGGGCGGCG 62.490 66.667 0.51 0.51 0.00 6.46
530 531 7.445402 GGCCTATTTAGTATCAATTGCTTCAGA 59.555 37.037 0.00 0.00 0.00 3.27
542 543 7.114754 TCAATTGCTTCAGATCTATTCAAGGT 58.885 34.615 0.00 0.00 0.00 3.50
545 546 6.992063 TGCTTCAGATCTATTCAAGGTTTC 57.008 37.500 0.00 0.00 0.00 2.78
549 550 7.094634 GCTTCAGATCTATTCAAGGTTTCAACA 60.095 37.037 0.00 0.00 0.00 3.33
569 570 2.595124 TTGACGACTGCAACTTCAGA 57.405 45.000 0.00 0.00 37.51 3.27
572 573 1.190323 GACGACTGCAACTTCAGAACG 59.810 52.381 0.00 5.87 40.17 3.95
594 595 1.302949 GTCCTTAGGGGCACATGCA 59.697 57.895 6.15 0.00 44.36 3.96
595 596 1.032114 GTCCTTAGGGGCACATGCAC 61.032 60.000 6.15 0.93 45.53 4.57
605 606 1.610522 GGCACATGCACAAAGACTTCT 59.389 47.619 6.15 0.00 44.36 2.85
607 608 3.491447 GGCACATGCACAAAGACTTCTTT 60.491 43.478 6.15 0.00 43.99 2.52
618 619 3.536956 AGACTTCTTTGTTGTCACCGA 57.463 42.857 0.00 0.00 33.56 4.69
619 620 4.073293 AGACTTCTTTGTTGTCACCGAT 57.927 40.909 0.00 0.00 33.56 4.18
636 637 1.287425 GATAAGGTCAAGCCGGTTCG 58.713 55.000 1.90 0.00 43.70 3.95
654 655 1.593265 GGCGGTTCCGGTAGAGAAA 59.407 57.895 13.16 0.00 0.00 2.52
655 656 0.177373 GGCGGTTCCGGTAGAGAAAT 59.823 55.000 13.16 0.00 0.00 2.17
657 658 1.935933 CGGTTCCGGTAGAGAAATGG 58.064 55.000 0.00 0.00 0.00 3.16
738 739 7.886629 ATCATGTTTGATGTGCCTTATACTT 57.113 32.000 0.00 0.00 41.12 2.24
742 743 8.892723 CATGTTTGATGTGCCTTATACTTCTAA 58.107 33.333 0.00 0.00 0.00 2.10
747 748 9.515226 TTGATGTGCCTTATACTTCTAAAAACT 57.485 29.630 0.00 0.00 0.00 2.66
806 807 8.608844 AGAGAGTGAAAGTCGTTTGAATATTT 57.391 30.769 0.00 0.00 42.50 1.40
814 815 9.244799 GAAAGTCGTTTGAATATTTCCAACTTT 57.755 29.630 11.26 11.26 34.25 2.66
815 816 9.594478 AAAGTCGTTTGAATATTTCCAACTTTT 57.406 25.926 0.00 0.66 34.25 2.27
816 817 9.594478 AAGTCGTTTGAATATTTCCAACTTTTT 57.406 25.926 0.00 0.00 34.25 1.94
835 836 2.772077 TATACTCCAAAACAGGCGCA 57.228 45.000 10.83 0.00 0.00 6.09
839 840 1.271379 ACTCCAAAACAGGCGCACTAT 60.271 47.619 10.83 0.00 0.00 2.12
840 841 1.812571 CTCCAAAACAGGCGCACTATT 59.187 47.619 10.83 0.00 0.00 1.73
841 842 1.539388 TCCAAAACAGGCGCACTATTG 59.461 47.619 10.83 7.45 0.00 1.90
842 843 1.402720 CCAAAACAGGCGCACTATTGG 60.403 52.381 10.83 12.93 33.23 3.16
843 844 0.243636 AAAACAGGCGCACTATTGGC 59.756 50.000 10.83 0.00 0.00 4.52
844 845 0.893270 AAACAGGCGCACTATTGGCA 60.893 50.000 10.83 0.00 0.00 4.92
845 846 1.586154 AACAGGCGCACTATTGGCAC 61.586 55.000 10.83 0.00 0.00 5.01
846 847 1.746615 CAGGCGCACTATTGGCACT 60.747 57.895 10.83 0.00 0.00 4.40
847 848 1.450312 AGGCGCACTATTGGCACTC 60.450 57.895 10.83 0.00 0.00 3.51
848 849 2.703409 GCGCACTATTGGCACTCG 59.297 61.111 0.30 0.00 0.00 4.18
849 850 1.809619 GCGCACTATTGGCACTCGA 60.810 57.895 0.30 0.00 0.00 4.04
850 851 1.999051 CGCACTATTGGCACTCGAC 59.001 57.895 0.00 0.00 0.00 4.20
851 852 0.735978 CGCACTATTGGCACTCGACA 60.736 55.000 0.00 0.00 0.00 4.35
852 853 1.002366 GCACTATTGGCACTCGACAG 58.998 55.000 0.00 0.00 0.00 3.51
853 854 1.673033 GCACTATTGGCACTCGACAGT 60.673 52.381 0.00 0.00 0.00 3.55
854 855 2.688507 CACTATTGGCACTCGACAGTT 58.311 47.619 0.00 0.00 0.00 3.16
855 856 3.845178 CACTATTGGCACTCGACAGTTA 58.155 45.455 0.00 0.00 0.00 2.24
856 857 4.242475 CACTATTGGCACTCGACAGTTAA 58.758 43.478 0.00 0.00 0.00 2.01
857 858 4.091509 CACTATTGGCACTCGACAGTTAAC 59.908 45.833 0.00 0.00 0.00 2.01
858 859 1.873698 TTGGCACTCGACAGTTAACC 58.126 50.000 0.88 0.00 0.00 2.85
859 860 0.319211 TGGCACTCGACAGTTAACCG 60.319 55.000 0.88 0.00 0.00 4.44
860 861 0.038892 GGCACTCGACAGTTAACCGA 60.039 55.000 0.88 3.68 0.00 4.69
861 862 1.603678 GGCACTCGACAGTTAACCGAA 60.604 52.381 0.88 0.00 31.59 4.30
862 863 1.454653 GCACTCGACAGTTAACCGAAC 59.545 52.381 0.88 0.00 38.44 3.95
863 864 2.056577 CACTCGACAGTTAACCGAACC 58.943 52.381 0.88 0.00 39.02 3.62
864 865 1.682854 ACTCGACAGTTAACCGAACCA 59.317 47.619 0.88 0.00 39.02 3.67
865 866 2.056577 CTCGACAGTTAACCGAACCAC 58.943 52.381 0.88 0.00 39.02 4.16
866 867 1.142474 CGACAGTTAACCGAACCACC 58.858 55.000 0.88 0.00 39.02 4.61
867 868 1.538634 CGACAGTTAACCGAACCACCA 60.539 52.381 0.88 0.00 39.02 4.17
868 869 1.869132 GACAGTTAACCGAACCACCAC 59.131 52.381 0.88 0.00 39.02 4.16
869 870 1.487558 ACAGTTAACCGAACCACCACT 59.512 47.619 0.88 0.00 39.02 4.00
870 871 2.092807 ACAGTTAACCGAACCACCACTT 60.093 45.455 0.88 0.00 39.02 3.16
871 872 2.289547 CAGTTAACCGAACCACCACTTG 59.710 50.000 0.88 0.00 39.02 3.16
879 880 4.828409 CCACCACTTGGCATGAGT 57.172 55.556 7.45 0.00 39.07 3.41
880 881 2.260247 CCACCACTTGGCATGAGTG 58.740 57.895 11.54 11.54 43.19 3.51
886 887 1.470098 CACTTGGCATGAGTGGTAAGC 59.530 52.381 10.79 0.00 40.58 3.09
887 888 1.352352 ACTTGGCATGAGTGGTAAGCT 59.648 47.619 7.45 0.00 0.00 3.74
888 889 2.571653 ACTTGGCATGAGTGGTAAGCTA 59.428 45.455 7.45 0.00 0.00 3.32
889 890 2.691409 TGGCATGAGTGGTAAGCTAC 57.309 50.000 0.00 0.00 0.00 3.58
890 891 1.905894 TGGCATGAGTGGTAAGCTACA 59.094 47.619 0.00 0.00 0.00 2.74
891 892 2.505407 TGGCATGAGTGGTAAGCTACAT 59.495 45.455 0.00 0.00 0.00 2.29
892 893 3.134458 GGCATGAGTGGTAAGCTACATC 58.866 50.000 0.00 0.00 0.00 3.06
893 894 3.432186 GGCATGAGTGGTAAGCTACATCA 60.432 47.826 0.00 0.00 0.00 3.07
894 895 4.191544 GCATGAGTGGTAAGCTACATCAA 58.808 43.478 0.00 0.00 0.00 2.57
895 896 4.635765 GCATGAGTGGTAAGCTACATCAAA 59.364 41.667 0.00 0.00 0.00 2.69
896 897 5.123820 GCATGAGTGGTAAGCTACATCAAAA 59.876 40.000 0.00 0.00 0.00 2.44
897 898 6.546395 CATGAGTGGTAAGCTACATCAAAAC 58.454 40.000 0.00 0.00 0.00 2.43
898 899 5.616270 TGAGTGGTAAGCTACATCAAAACA 58.384 37.500 0.00 0.00 0.00 2.83
899 900 6.058833 TGAGTGGTAAGCTACATCAAAACAA 58.941 36.000 0.00 0.00 0.00 2.83
900 901 6.714810 TGAGTGGTAAGCTACATCAAAACAAT 59.285 34.615 0.00 0.00 0.00 2.71
901 902 6.913170 AGTGGTAAGCTACATCAAAACAATG 58.087 36.000 0.00 0.00 0.00 2.82
902 903 6.714810 AGTGGTAAGCTACATCAAAACAATGA 59.285 34.615 0.00 0.00 0.00 2.57
903 904 7.230510 AGTGGTAAGCTACATCAAAACAATGAA 59.769 33.333 0.00 0.00 32.06 2.57
904 905 7.865385 GTGGTAAGCTACATCAAAACAATGAAA 59.135 33.333 0.00 0.00 32.06 2.69
905 906 8.417106 TGGTAAGCTACATCAAAACAATGAAAA 58.583 29.630 0.00 0.00 32.06 2.29
906 907 9.255304 GGTAAGCTACATCAAAACAATGAAAAA 57.745 29.630 0.00 0.00 32.06 1.94
934 935 0.397564 GTTAACCGAACCCCTCCACA 59.602 55.000 0.00 0.00 31.20 4.17
947 948 0.949588 CTCCACACAGCAGCTGACAG 60.950 60.000 29.70 18.95 35.18 3.51
979 981 4.147322 CATTGCGCCGTCCACGTC 62.147 66.667 4.18 0.00 37.74 4.34
984 986 4.778415 CGCCGTCCACGTCCAGAG 62.778 72.222 0.00 0.00 37.74 3.35
985 987 3.681835 GCCGTCCACGTCCAGAGT 61.682 66.667 0.00 0.00 37.74 3.24
986 988 2.567049 CCGTCCACGTCCAGAGTC 59.433 66.667 0.00 0.00 37.74 3.36
987 989 2.176055 CGTCCACGTCCAGAGTCG 59.824 66.667 0.00 0.00 34.11 4.18
988 990 2.322830 CGTCCACGTCCAGAGTCGA 61.323 63.158 0.00 0.00 34.11 4.20
989 991 1.502640 GTCCACGTCCAGAGTCGAG 59.497 63.158 0.00 0.00 0.00 4.04
990 992 0.954449 GTCCACGTCCAGAGTCGAGA 60.954 60.000 0.00 0.00 0.00 4.04
991 993 0.954449 TCCACGTCCAGAGTCGAGAC 60.954 60.000 5.72 5.72 0.00 3.36
995 997 3.125573 TCCAGAGTCGAGACGCCG 61.126 66.667 3.43 0.00 36.20 6.46
1026 1028 1.302993 GCGCTACAAAACCCTCCCA 60.303 57.895 0.00 0.00 0.00 4.37
1033 1035 2.334977 ACAAAACCCTCCCAAAATCCC 58.665 47.619 0.00 0.00 0.00 3.85
1042 1044 0.037419 CCCAAAATCCCACAAAGCCG 60.037 55.000 0.00 0.00 0.00 5.52
1076 1078 0.322546 AGATCCAACCAAACCCTCGC 60.323 55.000 0.00 0.00 0.00 5.03
1386 1388 1.492993 GGTTCCACCAGGAGCTCCTT 61.493 60.000 33.33 17.39 46.09 3.36
1389 1391 0.473694 TCCACCAGGAGCTCCTTGAA 60.474 55.000 34.35 14.76 46.09 2.69
1443 1445 1.483004 TCAGACAACTTCACGTTCCCA 59.517 47.619 0.00 0.00 32.27 4.37
1446 1448 0.253610 ACAACTTCACGTTCCCACCA 59.746 50.000 0.00 0.00 32.27 4.17
1458 1460 1.133181 TCCCACCAGTCATCAAGGCA 61.133 55.000 0.00 0.00 0.00 4.75
1715 1717 4.247380 GCGGGAGATGCAGGAGGG 62.247 72.222 0.00 0.00 0.00 4.30
1770 1772 4.000557 GTCGGTGTGTGCAGTGCG 62.001 66.667 11.20 0.00 0.00 5.34
1782 1784 1.215382 CAGTGCGGTCGGAGATTCA 59.785 57.895 0.00 0.00 40.67 2.57
1788 1790 0.936764 CGGTCGGAGATTCAGATGCG 60.937 60.000 0.00 0.00 40.67 4.73
1858 1860 2.038387 ATCCGTTACACCTGCATTCC 57.962 50.000 0.00 0.00 0.00 3.01
1923 1925 2.434428 CTCTTTGATCTGCAGCCTGTT 58.566 47.619 9.47 0.00 0.00 3.16
1974 1976 0.942252 CAGCGTACATGCAGCATGAT 59.058 50.000 36.91 23.87 43.81 2.45
2253 2255 8.484921 AGAACCATCTTCTGTGGAACTCCATC 62.485 46.154 0.86 0.00 39.79 3.51
2278 2280 6.531503 TTTCTGGGTACATTTTGAACAACA 57.468 33.333 0.00 0.00 0.00 3.33
2364 2366 6.365970 ACAACTGTCATTAAGGTGATCTCT 57.634 37.500 0.00 0.00 35.82 3.10
2379 2381 0.107361 TCTCTGGATGCAGGCACATG 60.107 55.000 14.84 0.00 0.00 3.21
2391 2393 3.429085 CAGGCACATGAAAGATTTACGC 58.571 45.455 0.00 0.00 0.00 4.42
2409 2411 0.174162 GCATGGCAAAGTCCATCCAC 59.826 55.000 0.00 0.00 44.63 4.02
2497 2499 2.029470 GGTGACTGTGGAGAACTCTCAG 60.029 54.545 8.91 17.62 44.60 3.35
2688 2690 1.207329 AGTATTTCGGTGGCTGAGGAC 59.793 52.381 0.00 0.00 0.00 3.85
2742 2744 4.669197 GCAGTTAAAAGTGGATGCAGTACG 60.669 45.833 0.00 0.00 33.92 3.67
2827 2829 0.110464 GCGACTCTTTGACAGCTTGC 60.110 55.000 0.00 0.00 0.00 4.01
2922 2924 8.335532 TCTTACCTCTGTTTTATGAAATGGTG 57.664 34.615 0.00 0.00 0.00 4.17
2931 2933 9.695526 CTGTTTTATGAAATGGTGAAGAATGAA 57.304 29.630 0.00 0.00 0.00 2.57
2952 2954 7.026631 TGAAAAGGAGCCAAATCATATTACG 57.973 36.000 0.00 0.00 0.00 3.18
2981 2983 5.534278 TGAATGTATTGCCTGTTTGTCAGAA 59.466 36.000 0.00 0.00 46.27 3.02
2982 2984 4.829064 TGTATTGCCTGTTTGTCAGAAC 57.171 40.909 0.00 0.00 46.27 3.01
2985 2987 2.136298 TGCCTGTTTGTCAGAACCAA 57.864 45.000 0.00 0.00 46.27 3.67
3009 3011 2.746472 GCAAGGAAAGTCTGTCCACTGT 60.746 50.000 11.89 0.00 37.65 3.55
3042 3044 5.995282 TCGAAATTTCTTCAGGCTAGAAACA 59.005 36.000 15.92 0.00 42.54 2.83
3043 3045 6.655003 TCGAAATTTCTTCAGGCTAGAAACAT 59.345 34.615 15.92 6.70 42.54 2.71
3099 3101 9.131791 AGTAGGTTCAACAATTTTGATTACAGT 57.868 29.630 0.00 0.00 0.00 3.55
3126 3128 5.941948 AACTCTTTAATTCGGTTGGTGAG 57.058 39.130 0.00 0.00 0.00 3.51
3316 3318 2.675348 GCAGAATGTGTTACAGCTCTCC 59.325 50.000 0.00 0.00 39.31 3.71
3527 3529 4.123729 TCTCCATGATGATAGCCTCAGA 57.876 45.455 0.00 0.00 37.28 3.27
3831 3833 2.827322 TGTGGGGAAATTGCTCATTGAG 59.173 45.455 9.40 9.40 0.00 3.02
3932 3934 1.801178 GCTGCGGTTAGATATGGAAGC 59.199 52.381 0.00 0.00 0.00 3.86
4134 4163 4.568956 TCATTCTTCTGCGAGATTGACAA 58.431 39.130 0.00 0.00 33.48 3.18
4259 4288 1.808945 CTCAGTGCAACCAGGATTGTC 59.191 52.381 0.00 0.00 37.80 3.18
4260 4289 1.142667 TCAGTGCAACCAGGATTGTCA 59.857 47.619 0.00 0.00 37.80 3.58
4261 4290 1.955778 CAGTGCAACCAGGATTGTCAA 59.044 47.619 0.00 0.00 37.80 3.18
4262 4291 2.559668 CAGTGCAACCAGGATTGTCAAT 59.440 45.455 0.00 0.00 37.80 2.57
4263 4292 2.559668 AGTGCAACCAGGATTGTCAATG 59.440 45.455 1.88 0.00 37.80 2.82
4264 4293 1.273048 TGCAACCAGGATTGTCAATGC 59.727 47.619 8.92 8.92 31.83 3.56
4265 4294 1.273048 GCAACCAGGATTGTCAATGCA 59.727 47.619 18.06 0.00 33.00 3.96
4267 4296 3.777478 CAACCAGGATTGTCAATGCATC 58.223 45.455 18.06 0.00 0.00 3.91
4268 4297 3.377253 ACCAGGATTGTCAATGCATCT 57.623 42.857 18.06 0.00 0.00 2.90
4269 4298 3.285484 ACCAGGATTGTCAATGCATCTC 58.715 45.455 18.06 0.00 0.00 2.75
4271 4300 3.315470 CCAGGATTGTCAATGCATCTCAG 59.685 47.826 18.06 2.40 0.00 3.35
4272 4301 3.945921 CAGGATTGTCAATGCATCTCAGT 59.054 43.478 18.06 0.00 0.00 3.41
4273 4302 3.945921 AGGATTGTCAATGCATCTCAGTG 59.054 43.478 18.06 0.00 41.77 3.66
4274 4303 3.488721 GGATTGTCAATGCATCTCAGTGC 60.489 47.826 11.83 0.00 45.25 4.40
4306 4351 8.527810 GGAAGATTGTGGTCATTTAAATGGTAA 58.472 33.333 24.40 14.04 37.03 2.85
4312 4357 4.461081 TGGTCATTTAAATGGTAAGCGCTT 59.539 37.500 27.97 27.97 37.03 4.68
4479 4539 0.904865 TCTCCTGACGATTGGGCAGT 60.905 55.000 0.55 0.00 0.00 4.40
4499 4559 7.815068 GGGCAGTCAGTTATAGATGTTATACTG 59.185 40.741 0.00 0.00 35.02 2.74
4536 4596 3.117813 TGTTGGTATAAGGGTATGTGGCC 60.118 47.826 0.00 0.00 0.00 5.36
4594 4666 0.542467 TTTGTGGTGCAGATGCCCAT 60.542 50.000 15.16 0.00 41.21 4.00
4595 4667 0.542467 TTGTGGTGCAGATGCCCATT 60.542 50.000 15.16 0.00 41.21 3.16
4596 4668 0.966875 TGTGGTGCAGATGCCCATTC 60.967 55.000 15.16 6.99 41.21 2.67
4597 4669 0.682209 GTGGTGCAGATGCCCATTCT 60.682 55.000 15.16 0.00 41.21 2.40
4598 4670 0.681887 TGGTGCAGATGCCCATTCTG 60.682 55.000 9.96 0.00 41.18 3.02
4618 4690 4.899457 TCTGTTGGGAAGACTTCAGTTCTA 59.101 41.667 16.85 0.00 0.00 2.10
4644 4716 6.272318 CAAACAGGCAACACAAATCTTTCTA 58.728 36.000 0.00 0.00 41.41 2.10
4662 4734 1.000955 CTACCTGCAAAGGTGTCTCGT 59.999 52.381 7.87 0.00 43.03 4.18
4679 4751 9.887406 GGTGTCTCGTTTTAATTATGAAAGAAA 57.113 29.630 0.00 0.00 0.00 2.52
4709 4781 5.060816 CGCAAAATATTTTGTAGCACTGGTG 59.939 40.000 31.43 13.08 46.92 4.17
4724 4796 3.694566 CACTGGTGTATTAAGAAAGGGCC 59.305 47.826 0.00 0.00 0.00 5.80
4784 4856 5.986004 TCAGAAAAGAAAGGAAGAACGTC 57.014 39.130 0.00 0.00 0.00 4.34
4832 4906 7.827236 CCTCCACATTTACCACTGTAAAGATTA 59.173 37.037 4.47 0.00 46.91 1.75
4857 4931 0.333993 ATCCTGTCCCAGCAATGCTT 59.666 50.000 4.36 0.00 36.40 3.91
4937 5011 8.715088 ACACAGTAAATTGTTACGGTAGAAATC 58.285 33.333 2.78 0.00 43.88 2.17
4968 5042 5.752892 ATGATTGACATCATCTGTTCTGC 57.247 39.130 0.00 0.00 45.67 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.294627 CGAAGCAAAGAAAACGAATACGC 59.705 43.478 0.00 0.00 43.96 4.42
1 2 3.838550 CCGAAGCAAAGAAAACGAATACG 59.161 43.478 0.00 0.00 45.75 3.06
2 3 3.602489 GCCGAAGCAAAGAAAACGAATAC 59.398 43.478 0.00 0.00 39.53 1.89
3 4 3.500680 AGCCGAAGCAAAGAAAACGAATA 59.499 39.130 0.00 0.00 43.56 1.75
4 5 2.293399 AGCCGAAGCAAAGAAAACGAAT 59.707 40.909 0.00 0.00 43.56 3.34
5 6 1.673920 AGCCGAAGCAAAGAAAACGAA 59.326 42.857 0.00 0.00 43.56 3.85
6 7 1.002900 CAGCCGAAGCAAAGAAAACGA 60.003 47.619 0.00 0.00 43.56 3.85
7 8 1.398595 CAGCCGAAGCAAAGAAAACG 58.601 50.000 0.00 0.00 43.56 3.60
8 9 1.131771 GCAGCCGAAGCAAAGAAAAC 58.868 50.000 0.00 0.00 43.56 2.43
9 10 0.031994 GGCAGCCGAAGCAAAGAAAA 59.968 50.000 0.00 0.00 43.56 2.29
10 11 1.106351 TGGCAGCCGAAGCAAAGAAA 61.106 50.000 7.03 0.00 43.56 2.52
11 12 1.518056 CTGGCAGCCGAAGCAAAGAA 61.518 55.000 7.03 0.00 43.56 2.52
12 13 1.968017 CTGGCAGCCGAAGCAAAGA 60.968 57.895 7.03 0.00 43.56 2.52
13 14 2.564975 CTGGCAGCCGAAGCAAAG 59.435 61.111 7.03 0.00 43.56 2.77
14 15 2.985282 CCTGGCAGCCGAAGCAAA 60.985 61.111 9.56 0.00 43.56 3.68
26 27 1.536073 GGGAAGAGTTTTGCCCTGGC 61.536 60.000 0.00 0.00 37.59 4.85
27 28 2.658548 GGGAAGAGTTTTGCCCTGG 58.341 57.895 0.00 0.00 37.59 4.45
30 31 0.112412 TGGAGGGAAGAGTTTTGCCC 59.888 55.000 0.00 0.00 41.00 5.36
31 32 1.539157 CTGGAGGGAAGAGTTTTGCC 58.461 55.000 0.00 0.00 0.00 4.52
32 33 1.539157 CCTGGAGGGAAGAGTTTTGC 58.461 55.000 0.00 0.00 37.23 3.68
33 34 1.074566 AGCCTGGAGGGAAGAGTTTTG 59.925 52.381 0.00 0.00 37.23 2.44
34 35 1.450360 AGCCTGGAGGGAAGAGTTTT 58.550 50.000 0.00 0.00 37.23 2.43
35 36 1.352687 GAAGCCTGGAGGGAAGAGTTT 59.647 52.381 0.00 0.00 37.23 2.66
36 37 0.988063 GAAGCCTGGAGGGAAGAGTT 59.012 55.000 0.00 0.00 37.23 3.01
37 38 0.178891 TGAAGCCTGGAGGGAAGAGT 60.179 55.000 0.00 0.00 37.23 3.24
38 39 0.251634 GTGAAGCCTGGAGGGAAGAG 59.748 60.000 0.00 0.00 37.23 2.85
39 40 1.201429 GGTGAAGCCTGGAGGGAAGA 61.201 60.000 0.00 0.00 37.23 2.87
40 41 1.301293 GGTGAAGCCTGGAGGGAAG 59.699 63.158 0.00 0.00 37.23 3.46
41 42 1.065410 TTGGTGAAGCCTGGAGGGAA 61.065 55.000 0.00 0.00 38.35 3.97
42 43 1.463214 TTGGTGAAGCCTGGAGGGA 60.463 57.895 0.00 0.00 38.35 4.20
43 44 1.303643 GTTGGTGAAGCCTGGAGGG 60.304 63.158 0.00 0.00 38.35 4.30
44 45 1.672356 CGTTGGTGAAGCCTGGAGG 60.672 63.158 0.00 0.00 38.35 4.30
45 46 0.671781 CTCGTTGGTGAAGCCTGGAG 60.672 60.000 0.00 0.00 38.35 3.86
46 47 1.371183 CTCGTTGGTGAAGCCTGGA 59.629 57.895 0.00 0.00 38.35 3.86
47 48 2.328099 GCTCGTTGGTGAAGCCTGG 61.328 63.158 0.00 0.00 38.35 4.45
48 49 2.328099 GGCTCGTTGGTGAAGCCTG 61.328 63.158 5.39 0.00 41.99 4.85
49 50 2.032681 GGCTCGTTGGTGAAGCCT 59.967 61.111 5.39 0.00 41.99 4.58
50 51 0.741221 CTAGGCTCGTTGGTGAAGCC 60.741 60.000 4.46 4.46 45.30 4.35
51 52 0.246635 TCTAGGCTCGTTGGTGAAGC 59.753 55.000 0.00 0.00 0.00 3.86
52 53 2.969628 ATCTAGGCTCGTTGGTGAAG 57.030 50.000 0.00 0.00 0.00 3.02
53 54 2.416836 CGAATCTAGGCTCGTTGGTGAA 60.417 50.000 0.00 0.00 0.00 3.18
54 55 1.134367 CGAATCTAGGCTCGTTGGTGA 59.866 52.381 0.00 0.00 0.00 4.02
55 56 1.560923 CGAATCTAGGCTCGTTGGTG 58.439 55.000 0.00 0.00 0.00 4.17
56 57 0.179108 GCGAATCTAGGCTCGTTGGT 60.179 55.000 13.57 0.00 37.39 3.67
57 58 0.876342 GGCGAATCTAGGCTCGTTGG 60.876 60.000 13.57 0.00 37.39 3.77
58 59 0.103208 AGGCGAATCTAGGCTCGTTG 59.897 55.000 13.57 0.00 40.72 4.10
59 60 2.506065 AGGCGAATCTAGGCTCGTT 58.494 52.632 13.57 3.30 40.72 3.85
60 61 4.261701 AGGCGAATCTAGGCTCGT 57.738 55.556 13.57 0.00 40.72 4.18
64 65 1.912417 TAGGAGAGGCGAATCTAGGC 58.088 55.000 0.00 0.00 0.00 3.93
395 396 5.079689 AGCCCGAAAGAAAAACTCAAAAA 57.920 34.783 0.00 0.00 0.00 1.94
396 397 4.401202 AGAGCCCGAAAGAAAAACTCAAAA 59.599 37.500 0.00 0.00 0.00 2.44
397 398 3.951680 AGAGCCCGAAAGAAAAACTCAAA 59.048 39.130 0.00 0.00 0.00 2.69
398 399 3.315191 CAGAGCCCGAAAGAAAAACTCAA 59.685 43.478 0.00 0.00 0.00 3.02
399 400 2.878406 CAGAGCCCGAAAGAAAAACTCA 59.122 45.455 0.00 0.00 0.00 3.41
400 401 3.139077 TCAGAGCCCGAAAGAAAAACTC 58.861 45.455 0.00 0.00 0.00 3.01
401 402 3.208747 TCAGAGCCCGAAAGAAAAACT 57.791 42.857 0.00 0.00 0.00 2.66
402 403 3.119814 GGATCAGAGCCCGAAAGAAAAAC 60.120 47.826 0.00 0.00 0.00 2.43
403 404 3.081804 GGATCAGAGCCCGAAAGAAAAA 58.918 45.455 0.00 0.00 0.00 1.94
404 405 2.305927 AGGATCAGAGCCCGAAAGAAAA 59.694 45.455 0.00 0.00 0.00 2.29
405 406 1.909302 AGGATCAGAGCCCGAAAGAAA 59.091 47.619 0.00 0.00 0.00 2.52
406 407 1.482593 GAGGATCAGAGCCCGAAAGAA 59.517 52.381 0.00 0.00 33.17 2.52
407 408 1.115467 GAGGATCAGAGCCCGAAAGA 58.885 55.000 0.00 0.00 33.17 2.52
408 409 1.118838 AGAGGATCAGAGCCCGAAAG 58.881 55.000 0.00 0.00 37.82 2.62
409 410 1.482593 GAAGAGGATCAGAGCCCGAAA 59.517 52.381 0.00 0.00 37.82 3.46
410 411 1.115467 GAAGAGGATCAGAGCCCGAA 58.885 55.000 0.00 0.00 37.82 4.30
411 412 1.103987 CGAAGAGGATCAGAGCCCGA 61.104 60.000 0.00 0.00 37.82 5.14
412 413 1.103987 TCGAAGAGGATCAGAGCCCG 61.104 60.000 0.00 0.00 37.82 6.13
413 414 2.814023 TCGAAGAGGATCAGAGCCC 58.186 57.895 0.00 0.00 37.82 5.19
425 426 1.906824 AGGTGCCCGAACTCGAAGA 60.907 57.895 0.00 0.00 43.02 2.87
426 427 1.738099 CAGGTGCCCGAACTCGAAG 60.738 63.158 0.00 0.00 43.02 3.79
427 428 2.342279 CAGGTGCCCGAACTCGAA 59.658 61.111 0.00 0.00 43.02 3.71
428 429 3.691342 CCAGGTGCCCGAACTCGA 61.691 66.667 0.00 0.00 43.02 4.04
429 430 3.691342 TCCAGGTGCCCGAACTCG 61.691 66.667 0.00 0.00 39.44 4.18
430 431 2.047179 GTCCAGGTGCCCGAACTC 60.047 66.667 0.00 0.00 0.00 3.01
431 432 0.907704 TATGTCCAGGTGCCCGAACT 60.908 55.000 0.00 0.00 0.00 3.01
432 433 0.462047 CTATGTCCAGGTGCCCGAAC 60.462 60.000 0.00 0.00 0.00 3.95
433 434 0.907704 ACTATGTCCAGGTGCCCGAA 60.908 55.000 0.00 0.00 0.00 4.30
434 435 1.305802 ACTATGTCCAGGTGCCCGA 60.306 57.895 0.00 0.00 0.00 5.14
435 436 1.144057 GACTATGTCCAGGTGCCCG 59.856 63.158 0.00 0.00 0.00 6.13
436 437 1.144057 CGACTATGTCCAGGTGCCC 59.856 63.158 0.00 0.00 0.00 5.36
437 438 0.753262 ATCGACTATGTCCAGGTGCC 59.247 55.000 0.00 0.00 0.00 5.01
438 439 1.409064 TCATCGACTATGTCCAGGTGC 59.591 52.381 0.00 0.00 36.89 5.01
439 440 3.801114 TTCATCGACTATGTCCAGGTG 57.199 47.619 0.00 0.00 36.89 4.00
440 441 3.769844 AGTTTCATCGACTATGTCCAGGT 59.230 43.478 0.00 0.00 36.89 4.00
441 442 4.098654 AGAGTTTCATCGACTATGTCCAGG 59.901 45.833 0.00 0.00 36.89 4.45
442 443 5.039984 CAGAGTTTCATCGACTATGTCCAG 58.960 45.833 0.00 0.00 36.89 3.86
443 444 4.142160 CCAGAGTTTCATCGACTATGTCCA 60.142 45.833 0.00 0.00 35.22 4.02
444 445 4.363999 CCAGAGTTTCATCGACTATGTCC 58.636 47.826 0.00 0.00 35.22 4.02
445 446 3.799420 GCCAGAGTTTCATCGACTATGTC 59.201 47.826 0.00 0.00 35.22 3.06
446 447 3.195610 TGCCAGAGTTTCATCGACTATGT 59.804 43.478 0.00 0.00 35.22 2.29
447 448 3.785486 TGCCAGAGTTTCATCGACTATG 58.215 45.455 0.00 0.00 36.40 2.23
448 449 4.679373 ATGCCAGAGTTTCATCGACTAT 57.321 40.909 0.00 0.00 0.00 2.12
449 450 4.887655 TCTATGCCAGAGTTTCATCGACTA 59.112 41.667 0.00 0.00 0.00 2.59
450 451 3.701542 TCTATGCCAGAGTTTCATCGACT 59.298 43.478 0.00 0.00 0.00 4.18
451 452 4.046938 TCTATGCCAGAGTTTCATCGAC 57.953 45.455 0.00 0.00 0.00 4.20
452 453 4.944619 ATCTATGCCAGAGTTTCATCGA 57.055 40.909 0.00 0.00 36.48 3.59
453 454 5.177142 CAGAATCTATGCCAGAGTTTCATCG 59.823 44.000 11.51 0.00 36.48 3.84
454 455 5.049543 GCAGAATCTATGCCAGAGTTTCATC 60.050 44.000 11.51 1.19 36.48 2.92
455 456 4.820716 GCAGAATCTATGCCAGAGTTTCAT 59.179 41.667 11.51 0.00 36.48 2.57
456 457 4.194640 GCAGAATCTATGCCAGAGTTTCA 58.805 43.478 11.51 0.00 36.48 2.69
457 458 4.809815 GCAGAATCTATGCCAGAGTTTC 57.190 45.455 2.62 2.62 36.48 2.78
466 467 4.215827 CCAAGAAGATGGCAGAATCTATGC 59.784 45.833 0.00 0.00 43.09 3.14
467 468 4.760715 CCCAAGAAGATGGCAGAATCTATG 59.239 45.833 0.00 0.00 39.26 2.23
468 469 4.202545 CCCCAAGAAGATGGCAGAATCTAT 60.203 45.833 0.00 0.00 39.26 1.98
469 470 3.137176 CCCCAAGAAGATGGCAGAATCTA 59.863 47.826 0.00 0.00 39.26 1.98
470 471 2.091994 CCCCAAGAAGATGGCAGAATCT 60.092 50.000 0.00 0.00 39.26 2.40
471 472 2.305009 CCCCAAGAAGATGGCAGAATC 58.695 52.381 0.00 0.00 39.26 2.52
472 473 1.063417 CCCCCAAGAAGATGGCAGAAT 60.063 52.381 0.00 0.00 39.26 2.40
473 474 0.332632 CCCCCAAGAAGATGGCAGAA 59.667 55.000 0.00 0.00 39.26 3.02
474 475 2.001803 CCCCCAAGAAGATGGCAGA 58.998 57.895 0.00 0.00 39.26 4.26
475 476 1.755783 GCCCCCAAGAAGATGGCAG 60.756 63.158 0.00 0.00 41.76 4.85
476 477 2.360191 GCCCCCAAGAAGATGGCA 59.640 61.111 0.00 0.00 41.76 4.92
477 478 2.830370 CGCCCCCAAGAAGATGGC 60.830 66.667 0.00 0.00 39.26 4.40
478 479 2.124151 CCGCCCCCAAGAAGATGG 60.124 66.667 0.00 0.00 40.35 3.51
479 480 2.830370 GCCGCCCCCAAGAAGATG 60.830 66.667 0.00 0.00 0.00 2.90
480 481 4.489771 CGCCGCCCCCAAGAAGAT 62.490 66.667 0.00 0.00 0.00 2.40
499 500 7.665974 AGCAATTGATACTAAATAGGCCTAACC 59.334 37.037 18.42 0.00 39.61 2.85
500 501 8.622948 AGCAATTGATACTAAATAGGCCTAAC 57.377 34.615 18.42 0.00 0.00 2.34
501 502 9.284968 GAAGCAATTGATACTAAATAGGCCTAA 57.715 33.333 18.42 0.00 0.00 2.69
502 503 8.436778 TGAAGCAATTGATACTAAATAGGCCTA 58.563 33.333 16.60 16.60 0.00 3.93
503 504 7.290061 TGAAGCAATTGATACTAAATAGGCCT 58.710 34.615 11.78 11.78 0.00 5.19
504 505 7.445402 TCTGAAGCAATTGATACTAAATAGGCC 59.555 37.037 10.34 0.00 0.00 5.19
505 506 8.383318 TCTGAAGCAATTGATACTAAATAGGC 57.617 34.615 10.34 0.00 0.00 3.93
516 517 7.778853 ACCTTGAATAGATCTGAAGCAATTGAT 59.221 33.333 10.34 0.00 0.00 2.57
520 521 7.613022 TGAAACCTTGAATAGATCTGAAGCAAT 59.387 33.333 5.18 0.00 0.00 3.56
530 531 7.390440 TCGTCAATGTTGAAACCTTGAATAGAT 59.610 33.333 13.28 0.00 42.41 1.98
537 538 4.282068 CAGTCGTCAATGTTGAAACCTTG 58.718 43.478 0.00 5.21 39.21 3.61
542 543 3.376859 AGTTGCAGTCGTCAATGTTGAAA 59.623 39.130 0.00 0.00 39.21 2.69
545 546 3.242706 TGAAGTTGCAGTCGTCAATGTTG 60.243 43.478 7.01 0.00 0.00 3.33
549 550 3.111853 TCTGAAGTTGCAGTCGTCAAT 57.888 42.857 9.73 0.00 37.20 2.57
555 556 2.286418 CCAACGTTCTGAAGTTGCAGTC 60.286 50.000 18.80 0.00 44.45 3.51
569 570 1.377612 GCCCCTAAGGACCAACGTT 59.622 57.895 0.00 0.00 38.24 3.99
572 573 0.331616 ATGTGCCCCTAAGGACCAAC 59.668 55.000 0.00 0.00 38.24 3.77
598 599 3.536956 TCGGTGACAACAAAGAAGTCT 57.463 42.857 0.00 0.00 33.56 3.24
615 616 0.107848 AACCGGCTTGACCTTATCGG 60.108 55.000 0.00 0.00 42.69 4.18
618 619 0.107848 CCGAACCGGCTTGACCTTAT 60.108 55.000 0.00 0.00 41.17 1.73
619 620 1.294138 CCGAACCGGCTTGACCTTA 59.706 57.895 0.00 0.00 41.17 2.69
636 637 0.177373 ATTTCTCTACCGGAACCGCC 59.823 55.000 9.46 0.00 38.24 6.13
638 639 1.935933 CCATTTCTCTACCGGAACCG 58.064 55.000 9.46 6.25 39.44 4.44
639 640 1.664873 GCCATTTCTCTACCGGAACC 58.335 55.000 9.46 0.00 0.00 3.62
641 642 1.134907 GTCGCCATTTCTCTACCGGAA 60.135 52.381 9.46 0.00 0.00 4.30
642 643 0.458669 GTCGCCATTTCTCTACCGGA 59.541 55.000 9.46 0.00 0.00 5.14
643 644 0.174845 TGTCGCCATTTCTCTACCGG 59.825 55.000 0.00 0.00 0.00 5.28
644 645 1.659098 GTTGTCGCCATTTCTCTACCG 59.341 52.381 0.00 0.00 0.00 4.02
645 646 1.659098 CGTTGTCGCCATTTCTCTACC 59.341 52.381 0.00 0.00 0.00 3.18
646 647 2.344741 GTCGTTGTCGCCATTTCTCTAC 59.655 50.000 0.00 0.00 36.96 2.59
647 648 2.029739 TGTCGTTGTCGCCATTTCTCTA 60.030 45.455 0.00 0.00 36.96 2.43
648 649 1.270094 TGTCGTTGTCGCCATTTCTCT 60.270 47.619 0.00 0.00 36.96 3.10
649 650 1.136336 GTGTCGTTGTCGCCATTTCTC 60.136 52.381 0.00 0.00 36.96 2.87
650 651 0.865769 GTGTCGTTGTCGCCATTTCT 59.134 50.000 0.00 0.00 36.96 2.52
654 655 1.827315 CGTTGTGTCGTTGTCGCCAT 61.827 55.000 0.00 0.00 36.96 4.40
655 656 2.518312 CGTTGTGTCGTTGTCGCCA 61.518 57.895 0.00 0.00 36.96 5.69
657 658 2.244382 CCGTTGTGTCGTTGTCGC 59.756 61.111 0.00 0.00 36.96 5.19
711 712 9.407380 AGTATAAGGCACATCAAACATGATAAA 57.593 29.630 0.00 0.00 0.00 1.40
712 713 8.978874 AGTATAAGGCACATCAAACATGATAA 57.021 30.769 0.00 0.00 0.00 1.75
713 714 8.978874 AAGTATAAGGCACATCAAACATGATA 57.021 30.769 0.00 0.00 0.00 2.15
716 717 7.325660 AGAAGTATAAGGCACATCAAACATG 57.674 36.000 0.00 0.00 0.00 3.21
722 723 9.515226 AAGTTTTTAGAAGTATAAGGCACATCA 57.485 29.630 0.00 0.00 0.00 3.07
778 779 6.737254 TTCAAACGACTTTCACTCTCTTTT 57.263 33.333 0.00 0.00 0.00 2.27
806 807 7.470841 GCCTGTTTTGGAGTATAAAAAGTTGGA 60.471 37.037 0.00 0.00 0.00 3.53
814 815 3.189702 GTGCGCCTGTTTTGGAGTATAAA 59.810 43.478 4.18 0.00 0.00 1.40
815 816 2.745281 GTGCGCCTGTTTTGGAGTATAA 59.255 45.455 4.18 0.00 0.00 0.98
816 817 2.027561 AGTGCGCCTGTTTTGGAGTATA 60.028 45.455 4.18 0.00 0.00 1.47
817 818 1.165270 GTGCGCCTGTTTTGGAGTAT 58.835 50.000 4.18 0.00 0.00 2.12
818 819 0.107831 AGTGCGCCTGTTTTGGAGTA 59.892 50.000 4.18 0.00 0.00 2.59
823 824 1.981254 CCAATAGTGCGCCTGTTTTG 58.019 50.000 4.18 7.76 0.00 2.44
835 836 4.243270 GTTAACTGTCGAGTGCCAATAGT 58.757 43.478 0.00 0.00 30.61 2.12
839 840 1.870580 CGGTTAACTGTCGAGTGCCAA 60.871 52.381 6.25 0.00 30.61 4.52
840 841 0.319211 CGGTTAACTGTCGAGTGCCA 60.319 55.000 6.25 0.00 30.61 4.92
841 842 0.038892 TCGGTTAACTGTCGAGTGCC 60.039 55.000 14.06 0.00 30.61 5.01
842 843 1.454653 GTTCGGTTAACTGTCGAGTGC 59.545 52.381 14.06 2.44 35.05 4.40
843 844 2.056577 GGTTCGGTTAACTGTCGAGTG 58.943 52.381 14.06 0.00 38.23 3.51
844 845 1.682854 TGGTTCGGTTAACTGTCGAGT 59.317 47.619 14.06 0.00 38.23 4.18
845 846 2.056577 GTGGTTCGGTTAACTGTCGAG 58.943 52.381 14.06 0.00 38.23 4.04
846 847 1.269726 GGTGGTTCGGTTAACTGTCGA 60.270 52.381 14.06 7.75 38.23 4.20
847 848 1.142474 GGTGGTTCGGTTAACTGTCG 58.858 55.000 14.06 5.43 38.23 4.35
848 849 1.869132 GTGGTGGTTCGGTTAACTGTC 59.131 52.381 14.06 8.65 38.23 3.51
849 850 1.487558 AGTGGTGGTTCGGTTAACTGT 59.512 47.619 14.06 0.00 38.23 3.55
850 851 2.249844 AGTGGTGGTTCGGTTAACTG 57.750 50.000 8.22 8.22 38.23 3.16
851 852 2.567985 CAAGTGGTGGTTCGGTTAACT 58.432 47.619 5.42 0.00 38.23 2.24
852 853 1.605232 CCAAGTGGTGGTTCGGTTAAC 59.395 52.381 0.00 0.00 43.20 2.01
853 854 1.970092 CCAAGTGGTGGTTCGGTTAA 58.030 50.000 0.00 0.00 43.20 2.01
854 855 3.709974 CCAAGTGGTGGTTCGGTTA 57.290 52.632 0.00 0.00 43.20 2.85
855 856 4.571243 CCAAGTGGTGGTTCGGTT 57.429 55.556 0.00 0.00 43.20 4.44
866 867 1.470098 GCTTACCACTCATGCCAAGTG 59.530 52.381 6.14 6.14 43.04 3.16
867 868 1.352352 AGCTTACCACTCATGCCAAGT 59.648 47.619 0.00 0.00 0.00 3.16
868 869 2.119801 AGCTTACCACTCATGCCAAG 57.880 50.000 0.00 0.00 0.00 3.61
869 870 2.304470 TGTAGCTTACCACTCATGCCAA 59.696 45.455 0.00 0.00 0.00 4.52
870 871 1.905894 TGTAGCTTACCACTCATGCCA 59.094 47.619 0.00 0.00 0.00 4.92
871 872 2.691409 TGTAGCTTACCACTCATGCC 57.309 50.000 0.00 0.00 0.00 4.40
872 873 3.797039 TGATGTAGCTTACCACTCATGC 58.203 45.455 0.00 0.00 0.00 4.06
873 874 6.149308 TGTTTTGATGTAGCTTACCACTCATG 59.851 38.462 0.00 0.00 0.00 3.07
874 875 6.237901 TGTTTTGATGTAGCTTACCACTCAT 58.762 36.000 0.00 0.00 0.00 2.90
875 876 5.616270 TGTTTTGATGTAGCTTACCACTCA 58.384 37.500 0.00 0.00 0.00 3.41
876 877 6.554334 TTGTTTTGATGTAGCTTACCACTC 57.446 37.500 0.00 0.00 0.00 3.51
877 878 6.714810 TCATTGTTTTGATGTAGCTTACCACT 59.285 34.615 0.00 0.00 0.00 4.00
878 879 6.908825 TCATTGTTTTGATGTAGCTTACCAC 58.091 36.000 0.00 0.00 0.00 4.16
879 880 7.517614 TTCATTGTTTTGATGTAGCTTACCA 57.482 32.000 0.00 0.00 0.00 3.25
880 881 8.810652 TTTTCATTGTTTTGATGTAGCTTACC 57.189 30.769 0.00 0.00 0.00 2.85
908 909 3.633525 GAGGGGTTCGGTTAACTGTTTTT 59.366 43.478 14.06 0.00 38.23 1.94
909 910 3.216800 GAGGGGTTCGGTTAACTGTTTT 58.783 45.455 14.06 0.00 38.23 2.43
910 911 2.487805 GGAGGGGTTCGGTTAACTGTTT 60.488 50.000 14.06 0.00 38.23 2.83
911 912 1.072806 GGAGGGGTTCGGTTAACTGTT 59.927 52.381 14.06 0.00 38.23 3.16
912 913 0.689055 GGAGGGGTTCGGTTAACTGT 59.311 55.000 14.06 0.00 38.23 3.55
913 914 0.688487 TGGAGGGGTTCGGTTAACTG 59.312 55.000 8.22 8.22 38.23 3.16
914 915 0.689055 GTGGAGGGGTTCGGTTAACT 59.311 55.000 5.42 0.00 38.23 2.24
915 916 0.397564 TGTGGAGGGGTTCGGTTAAC 59.602 55.000 0.00 0.00 37.36 2.01
916 917 0.397564 GTGTGGAGGGGTTCGGTTAA 59.602 55.000 0.00 0.00 0.00 2.01
917 918 0.763604 TGTGTGGAGGGGTTCGGTTA 60.764 55.000 0.00 0.00 0.00 2.85
918 919 2.052047 CTGTGTGGAGGGGTTCGGTT 62.052 60.000 0.00 0.00 0.00 4.44
919 920 2.446994 TGTGTGGAGGGGTTCGGT 60.447 61.111 0.00 0.00 0.00 4.69
920 921 2.347490 CTGTGTGGAGGGGTTCGG 59.653 66.667 0.00 0.00 0.00 4.30
921 922 2.358737 GCTGTGTGGAGGGGTTCG 60.359 66.667 0.00 0.00 0.00 3.95
922 923 1.302832 CTGCTGTGTGGAGGGGTTC 60.303 63.158 0.00 0.00 0.00 3.62
934 935 0.320596 GCTCTTCTGTCAGCTGCTGT 60.321 55.000 27.24 0.00 32.61 4.40
977 979 2.486042 GGCGTCTCGACTCTGGAC 59.514 66.667 0.00 0.00 0.00 4.02
978 980 3.125573 CGGCGTCTCGACTCTGGA 61.126 66.667 0.00 0.00 29.68 3.86
979 981 4.180946 CCGGCGTCTCGACTCTGG 62.181 72.222 6.01 0.89 36.37 3.86
981 983 2.820479 CTCCGGCGTCTCGACTCT 60.820 66.667 6.01 0.00 29.68 3.24
982 984 4.539881 GCTCCGGCGTCTCGACTC 62.540 72.222 6.01 0.00 29.68 3.36
984 986 4.194720 ATGCTCCGGCGTCTCGAC 62.195 66.667 6.01 0.00 42.25 4.20
985 987 4.193334 CATGCTCCGGCGTCTCGA 62.193 66.667 6.01 0.00 42.25 4.04
986 988 3.699955 TTCATGCTCCGGCGTCTCG 62.700 63.158 6.01 0.00 42.25 4.04
987 989 2.167861 GTTCATGCTCCGGCGTCTC 61.168 63.158 6.01 0.00 42.25 3.36
988 990 2.125512 GTTCATGCTCCGGCGTCT 60.126 61.111 6.01 0.00 42.25 4.18
989 991 3.195698 GGTTCATGCTCCGGCGTC 61.196 66.667 6.01 0.00 42.25 5.19
990 992 4.778143 GGGTTCATGCTCCGGCGT 62.778 66.667 6.01 0.00 42.25 5.68
995 997 3.733344 TAGCGCGGGTTCATGCTCC 62.733 63.158 8.83 0.00 38.82 4.70
1026 1028 1.618343 CTTCCGGCTTTGTGGGATTTT 59.382 47.619 0.00 0.00 0.00 1.82
1076 1078 0.811616 CGAGGAGGCGAAGGATTTGG 60.812 60.000 0.00 0.00 0.00 3.28
1386 1388 0.981183 ACGCCCTCCTGTACATTTCA 59.019 50.000 0.00 0.00 0.00 2.69
1389 1391 1.078426 GCACGCCCTCCTGTACATT 60.078 57.895 0.00 0.00 0.00 2.71
1425 1427 1.474498 GGTGGGAACGTGAAGTTGTCT 60.474 52.381 0.00 0.00 44.35 3.41
1443 1445 0.038599 TGCATGCCTTGATGACTGGT 59.961 50.000 16.68 0.00 0.00 4.00
1446 1448 1.028330 CCGTGCATGCCTTGATGACT 61.028 55.000 16.68 0.00 0.00 3.41
1770 1772 0.598680 CCGCATCTGAATCTCCGACC 60.599 60.000 0.00 0.00 0.00 4.79
1788 1790 2.410469 GCATGCAGCGAATCACCC 59.590 61.111 14.21 0.00 0.00 4.61
1858 1860 2.386661 AACCCAGCGTACATTGAGAG 57.613 50.000 0.00 0.00 0.00 3.20
1923 1925 7.235079 TGGAATTGTAAGACACCAAATCCTTA 58.765 34.615 7.70 0.00 40.03 2.69
1974 1976 6.001449 ACCTCGAATGATTCCTTCCATTTA 57.999 37.500 0.00 0.00 33.57 1.40
2089 2091 1.162181 CCATGCACAGATTCGCCGAT 61.162 55.000 0.00 0.00 0.00 4.18
2253 2255 6.983307 TGTTGTTCAAAATGTACCCAGAAATG 59.017 34.615 0.00 0.00 0.00 2.32
2278 2280 0.035317 TCGAGAGCAGTGTGCCATTT 59.965 50.000 0.00 0.00 46.52 2.32
2295 2297 0.792640 GCATCCTGCGGAATGTATCG 59.207 55.000 0.00 0.00 34.34 2.92
2332 2334 1.167851 ATGACAGTTGTTGCATCGGG 58.832 50.000 0.00 0.00 0.00 5.14
2364 2366 1.179152 CTTTCATGTGCCTGCATCCA 58.821 50.000 0.00 0.00 0.00 3.41
2379 2381 4.485163 ACTTTGCCATGCGTAAATCTTTC 58.515 39.130 0.00 0.00 0.00 2.62
2688 2690 2.086869 AGTGATTCTCCAATTGTGGCG 58.913 47.619 4.43 0.00 45.54 5.69
2742 2744 3.751698 GGGTGTGTGTAAGAGAAACATCC 59.248 47.826 0.00 0.00 35.04 3.51
2797 2799 2.866085 AAGAGTCGCTGGCATGCCTC 62.866 60.000 35.53 25.13 36.94 4.70
2827 2829 3.742433 AGAGACTGTGTTCACAGAAGG 57.258 47.619 31.09 12.55 39.99 3.46
2922 2924 6.029346 TGATTTGGCTCCTTTTCATTCTTC 57.971 37.500 0.00 0.00 0.00 2.87
2931 2933 7.773690 AGTAACGTAATATGATTTGGCTCCTTT 59.226 33.333 0.00 0.00 0.00 3.11
2952 2954 6.677913 ACAAACAGGCAATACATTCAGTAAC 58.322 36.000 0.00 0.00 36.05 2.50
2981 2983 3.299503 ACAGACTTTCCTTGCAATTGGT 58.700 40.909 7.72 0.00 0.00 3.67
2982 2984 3.305608 GGACAGACTTTCCTTGCAATTGG 60.306 47.826 7.72 0.00 0.00 3.16
2985 2987 2.887152 GTGGACAGACTTTCCTTGCAAT 59.113 45.455 9.07 0.00 33.84 3.56
3009 3011 6.611381 CCTGAAGAAATTTCGAACTGCATAA 58.389 36.000 12.42 0.00 0.00 1.90
3042 3044 4.368565 AATGGCTGATGTGAGCATAGAT 57.631 40.909 0.00 0.00 41.08 1.98
3043 3045 3.851458 AATGGCTGATGTGAGCATAGA 57.149 42.857 0.00 0.00 41.08 1.98
3099 3101 5.163499 ACCAACCGAATTAAAGAGTTTGCAA 60.163 36.000 0.00 0.00 0.00 4.08
3111 3113 6.263392 TGATGTTTTTCTCACCAACCGAATTA 59.737 34.615 0.00 0.00 0.00 1.40
3126 3128 9.754382 ATGCAATTCCATACTATGATGTTTTTC 57.246 29.630 0.00 0.00 0.00 2.29
3316 3318 5.253330 TCCACCAAAGCCATTCTTTAGTAG 58.747 41.667 0.00 0.00 42.82 2.57
3527 3529 1.557099 TACGTCATCTGGCTCCACTT 58.443 50.000 0.00 0.00 0.00 3.16
3633 3635 1.221566 CATCCTCGGTGTGATGCCA 59.778 57.895 0.00 0.00 32.71 4.92
3831 3833 2.607187 CGTGGATTACTGTGGTCAGAC 58.393 52.381 2.17 0.00 43.76 3.51
3932 3934 4.262164 CCACATCTTTCCTCAACCCTTTTG 60.262 45.833 0.00 0.00 0.00 2.44
4019 4021 4.044426 GCAGGTTTTCAACACATTCTGAC 58.956 43.478 0.00 0.00 0.00 3.51
4021 4023 4.202040 TGAGCAGGTTTTCAACACATTCTG 60.202 41.667 0.00 0.00 0.00 3.02
4022 4024 3.953612 TGAGCAGGTTTTCAACACATTCT 59.046 39.130 0.00 0.00 0.00 2.40
4036 4064 1.699634 TCAACTTAGGCTTGAGCAGGT 59.300 47.619 5.24 0.00 44.36 4.00
4263 4292 0.321919 TCCTGGTTGCACTGAGATGC 60.322 55.000 0.00 0.00 46.32 3.91
4264 4293 2.082231 CTTCCTGGTTGCACTGAGATG 58.918 52.381 0.00 0.00 0.00 2.90
4265 4294 1.980765 TCTTCCTGGTTGCACTGAGAT 59.019 47.619 0.00 0.00 0.00 2.75
4267 4296 2.486472 ATCTTCCTGGTTGCACTGAG 57.514 50.000 0.00 0.00 0.00 3.35
4268 4297 2.158623 ACAATCTTCCTGGTTGCACTGA 60.159 45.455 0.00 0.00 0.00 3.41
4269 4298 2.030540 CACAATCTTCCTGGTTGCACTG 60.031 50.000 0.00 0.00 0.00 3.66
4271 4300 1.270550 CCACAATCTTCCTGGTTGCAC 59.729 52.381 0.00 0.00 0.00 4.57
4272 4301 1.133513 ACCACAATCTTCCTGGTTGCA 60.134 47.619 0.00 0.00 34.44 4.08
4273 4302 1.541588 GACCACAATCTTCCTGGTTGC 59.458 52.381 0.00 0.00 38.47 4.17
4274 4303 2.862541 TGACCACAATCTTCCTGGTTG 58.137 47.619 0.00 0.00 38.47 3.77
4277 4306 6.588719 TTTAAATGACCACAATCTTCCTGG 57.411 37.500 0.00 0.00 0.00 4.45
4278 4307 7.037438 CCATTTAAATGACCACAATCTTCCTG 58.963 38.462 26.32 3.23 38.70 3.86
4306 4351 2.901292 GCAACAGCTGTGAAGCGCT 61.901 57.895 22.49 2.64 40.27 5.92
4312 4357 2.723231 AGCAATGCAACAGCTGTGA 58.277 47.368 22.49 8.10 37.20 3.58
4427 4483 7.067737 TGTGTTCATGTACCTGATACTCGAATA 59.932 37.037 1.42 0.00 34.56 1.75
4499 4559 3.135994 ACCAACATTACGAGGTGTCAAC 58.864 45.455 0.00 0.00 32.04 3.18
4536 4596 9.599322 GACGATATATAACAAGAAAATGGCAAG 57.401 33.333 0.00 0.00 0.00 4.01
4594 4666 4.164221 AGAACTGAAGTCTTCCCAACAGAA 59.836 41.667 10.12 0.00 0.00 3.02
4595 4667 3.711704 AGAACTGAAGTCTTCCCAACAGA 59.288 43.478 10.12 0.00 0.00 3.41
4596 4668 4.078639 AGAACTGAAGTCTTCCCAACAG 57.921 45.455 10.12 3.69 0.00 3.16
4597 4669 4.202326 GGTAGAACTGAAGTCTTCCCAACA 60.202 45.833 10.12 0.00 0.00 3.33
4598 4670 4.202326 TGGTAGAACTGAAGTCTTCCCAAC 60.202 45.833 10.12 0.42 0.00 3.77
4618 4690 2.765699 AGATTTGTGTTGCCTGTTTGGT 59.234 40.909 0.00 0.00 38.35 3.67
4709 4781 7.170393 AGAAACATTGGCCCTTTCTTAATAC 57.830 36.000 0.00 0.00 31.52 1.89
4775 4847 1.003718 CCCACCCTGGACGTTCTTC 60.004 63.158 0.00 0.00 40.96 2.87
4784 4856 2.935481 TCTGGAAGCCCACCCTGG 60.935 66.667 0.00 0.00 37.58 4.45
4857 4931 9.865321 GTTACCATATGTGAAAGTAGTAAGTCA 57.135 33.333 1.24 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.