AutoCloner

Multiple sequence alignment - TraesCS4A01G004200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4A01G004200	chr4A	100.000	2339	0	0	1	2339	2973257	2975595	0.000000e+00	4320
1	TraesCS4A01G004200	chr4A	97.445	1644	39	1	1	1641	448544949	448546592	0.000000e+00	2800
2	TraesCS4A01G004200	chr5A	96.531	1643	43	5	1	1642	480184355	480182726	0.000000e+00	2706
3	TraesCS4A01G004200	chr5A	96.738	1625	48	5	21	1642	702078270	702079892	0.000000e+00	2702
4	TraesCS4A01G004200	chr6A	96.409	1643	56	3	1	1641	176175462	176177103	0.000000e+00	2704
5	TraesCS4A01G004200	chr2B	94.499	1636	88	2	1	1636	452232825	452234458	0.000000e+00	2521
6	TraesCS4A01G004200	chr2B	84.176	455	67	4	1648	2101	695443305	695442855	9.920000e-119	436
7	TraesCS4A01G004200	chr2B	84.141	454	67	4	1648	2100	40937786	40938235	3.570000e-118	435
8	TraesCS4A01G004200	chr6B	92.354	1648	111	12	1	1641	301711	300072	0.000000e+00	2331
9	TraesCS4A01G004200	chr6B	90.079	1643	156	6	1	1641	411081965	411080328	0.000000e+00	2124
10	TraesCS4A01G004200	chr4B	91.793	1645	129	6	1	1642	98851993	98853634	0.000000e+00	2285
11	TraesCS4A01G004200	chr4B	89.793	1646	164	3	1	1646	670054663	670053022	0.000000e+00	2106
12	TraesCS4A01G004200	chr4B	85.307	667	90	8	1676	2338	587856354	587855692	0.000000e+00	682
13	TraesCS4A01G004200	chr4B	83.878	459	67	6	1644	2100	619363427	619362974	4.620000e-117	431
14	TraesCS4A01G004200	chr4D	86.000	650	83	7	1695	2339	468537513	468536867	0.000000e+00	689
15	TraesCS4A01G004200	chr7B	84.615	455	65	4	1648	2101	113206833	113207283	4.590000e-122	448
16	TraesCS4A01G004200	chr7B	84.176	455	65	6	1648	2100	648098309	648097860	3.570000e-118	435
17	TraesCS4A01G004200	chr7B	83.956	455	69	4	1648	2101	164084010	164083559	1.280000e-117	433
18	TraesCS4A01G004200	chr3B	83.956	455	69	4	1648	2101	101261093	101260642	1.280000e-117	433

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4A01G004200	chr4A	2973257	2975595	2338	False	4320	4320	100.000	1	2339	1	chr4A.!!$F1	2338
1	TraesCS4A01G004200	chr4A	448544949	448546592	1643	False	2800	2800	97.445	1	1641	1	chr4A.!!$F2	1640
2	TraesCS4A01G004200	chr5A	480182726	480184355	1629	True	2706	2706	96.531	1	1642	1	chr5A.!!$R1	1641
3	TraesCS4A01G004200	chr5A	702078270	702079892	1622	False	2702	2702	96.738	21	1642	1	chr5A.!!$F1	1621
4	TraesCS4A01G004200	chr6A	176175462	176177103	1641	False	2704	2704	96.409	1	1641	1	chr6A.!!$F1	1640
5	TraesCS4A01G004200	chr2B	452232825	452234458	1633	False	2521	2521	94.499	1	1636	1	chr2B.!!$F2	1635
6	TraesCS4A01G004200	chr6B	300072	301711	1639	True	2331	2331	92.354	1	1641	1	chr6B.!!$R1	1640
7	TraesCS4A01G004200	chr6B	411080328	411081965	1637	True	2124	2124	90.079	1	1641	1	chr6B.!!$R2	1640
8	TraesCS4A01G004200	chr4B	98851993	98853634	1641	False	2285	2285	91.793	1	1642	1	chr4B.!!$F1	1641
9	TraesCS4A01G004200	chr4B	670053022	670054663	1641	True	2106	2106	89.793	1	1646	1	chr4B.!!$R3	1645
10	TraesCS4A01G004200	chr4B	587855692	587856354	662	True	682	682	85.307	1676	2338	1	chr4B.!!$R1	662
11	TraesCS4A01G004200	chr4D	468536867	468537513	646	True	689	689	86.000	1695	2339	1	chr4D.!!$R1	644

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
831	842	2.47099	GCCAAGATCCCCCTCAAAATT	58.529	47.619	0.0	0.0	0.0	1.82	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2127	2161	0.179073	GCAGACGCCCATACACATCT	60.179	55.0	0.0	0.0	0.0	2.9	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
86	88	3.782889	AACTTTGTTGGACTCAGTTGC	57.217	42.857	0.00	0.00	0.00	4.17
206	209	6.128363	GGTTGTAACAAGAAAAGGAGGTATCG	60.128	42.308	0.00	0.00	0.00	2.92
416	421	3.197766	AGGTTCAATGATTCTCCGTGCTA	59.802	43.478	0.00	0.00	0.00	3.49
831	842	2.470990	GCCAAGATCCCCCTCAAAATT	58.529	47.619	0.00	0.00	0.00	1.82
946	957	7.433131	CCTTTTGTGACAATATTGAATCATCCG	59.567	37.037	22.16	4.83	0.00	4.18
1021	1032	1.521141	GCTTTAGGGACGGACCTCC	59.479	63.158	3.22	2.26	42.09	4.30
1128	1139	2.679639	CGTTTGCTGGGCTATCTGGTTA	60.680	50.000	0.00	0.00	0.00	2.85
1139	1150	5.012148	GGGCTATCTGGTTAGCTAGAAATCA	59.988	44.000	0.00	0.00	43.37	2.57
1353	1368	2.130395	GAATGATCTCGCAATCTCGCA	58.870	47.619	0.00	0.00	0.00	5.10
1461	1481	6.460781	TGTAGTATTTCAGGTTGTCGTTGAT	58.539	36.000	0.00	0.00	0.00	2.57
1486	1506	1.021968	GTGTTGTCAGGTTTTCGCCT	58.978	50.000	0.00	0.00	39.99	5.52
1531	1551	0.534203	GAACGCAGTGGGTTTCCTGA	60.534	55.000	24.49	0.00	45.00	3.86
1596	1617	7.976734	TGTTTGTTTCTCGGAACAATGTATTTT	59.023	29.630	4.47	0.00	45.76	1.82
1597	1618	8.813282	GTTTGTTTCTCGGAACAATGTATTTTT	58.187	29.630	4.47	0.00	45.76	1.94
1659	1692	3.821421	AAACCTATCTCCGACATCACC	57.179	47.619	0.00	0.00	0.00	4.02
1660	1693	1.705873	ACCTATCTCCGACATCACCC	58.294	55.000	0.00	0.00	0.00	4.61
1661	1694	0.969894	CCTATCTCCGACATCACCCC	59.030	60.000	0.00	0.00	0.00	4.95
1662	1695	1.704641	CTATCTCCGACATCACCCCA	58.295	55.000	0.00	0.00	0.00	4.96
1663	1696	2.039418	CTATCTCCGACATCACCCCAA	58.961	52.381	0.00	0.00	0.00	4.12
1664	1697	1.511613	ATCTCCGACATCACCCCAAT	58.488	50.000	0.00	0.00	0.00	3.16
1665	1698	2.168458	TCTCCGACATCACCCCAATA	57.832	50.000	0.00	0.00	0.00	1.90
1666	1699	2.039418	TCTCCGACATCACCCCAATAG	58.961	52.381	0.00	0.00	0.00	1.73
1667	1700	2.039418	CTCCGACATCACCCCAATAGA	58.961	52.381	0.00	0.00	0.00	1.98
1668	1701	1.760613	TCCGACATCACCCCAATAGAC	59.239	52.381	0.00	0.00	0.00	2.59
1669	1702	1.484653	CCGACATCACCCCAATAGACA	59.515	52.381	0.00	0.00	0.00	3.41
1670	1703	2.550978	CGACATCACCCCAATAGACAC	58.449	52.381	0.00	0.00	0.00	3.67
1671	1704	2.741878	CGACATCACCCCAATAGACACC	60.742	54.545	0.00	0.00	0.00	4.16
1672	1705	1.209504	ACATCACCCCAATAGACACCG	59.790	52.381	0.00	0.00	0.00	4.94
1673	1706	1.484653	CATCACCCCAATAGACACCGA	59.515	52.381	0.00	0.00	0.00	4.69
1674	1707	1.646912	TCACCCCAATAGACACCGAA	58.353	50.000	0.00	0.00	0.00	4.30
1675	1708	1.979308	TCACCCCAATAGACACCGAAA	59.021	47.619	0.00	0.00	0.00	3.46
1676	1709	2.027561	TCACCCCAATAGACACCGAAAG	60.028	50.000	0.00	0.00	0.00	2.62
1677	1710	2.027561	CACCCCAATAGACACCGAAAGA	60.028	50.000	0.00	0.00	0.00	2.52
1678	1711	2.640826	ACCCCAATAGACACCGAAAGAA	59.359	45.455	0.00	0.00	0.00	2.52
1679	1712	3.073356	ACCCCAATAGACACCGAAAGAAA	59.927	43.478	0.00	0.00	0.00	2.52
1680	1713	4.076394	CCCCAATAGACACCGAAAGAAAA	58.924	43.478	0.00	0.00	0.00	2.29
1681	1714	4.521256	CCCCAATAGACACCGAAAGAAAAA	59.479	41.667	0.00	0.00	0.00	1.94
1682	1715	5.185056	CCCCAATAGACACCGAAAGAAAAAT	59.815	40.000	0.00	0.00	0.00	1.82
1693	1726	9.410556	ACACCGAAAGAAAAATAAAATGATGAG	57.589	29.630	0.00	0.00	0.00	2.90
1701	1734	9.525826	AGAAAAATAAAATGATGAGTCACCTCT	57.474	29.630	0.00	0.00	38.61	3.69
1800	1833	1.792006	ACCGTTGAACGAATCAGACC	58.208	50.000	20.47	0.00	46.05	3.85
1825	1858	4.715523	CACCCCGGACACGCCATT	62.716	66.667	0.73	0.00	39.22	3.16
1871	1905	1.275291	TGACTAAGACGCCAAAGGAGG	59.725	52.381	0.00	0.00	0.00	4.30
1879	1913	0.527565	CGCCAAAGGAGGAAACCATG	59.472	55.000	0.00	0.00	0.00	3.66
1899	1933	2.093890	GCATGTCATCCATCAACCACA	58.906	47.619	0.00	0.00	0.00	4.17
1902	1936	4.382254	GCATGTCATCCATCAACCACAAAT	60.382	41.667	0.00	0.00	0.00	2.32
1918	1952	2.297033	ACAAATCCAGCACATGTTCCAC	59.703	45.455	0.00	0.00	0.00	4.02
1929	1963	3.624861	CACATGTTCCACCTTCTAGATGC	59.375	47.826	0.00	0.00	0.00	3.91
1933	1967	1.568504	TCCACCTTCTAGATGCCGTT	58.431	50.000	0.00	0.00	0.00	4.44
1984	2018	0.178903	ACTACCTCCCAAGCTCCACA	60.179	55.000	0.00	0.00	0.00	4.17
2001	2035	3.706373	ACCGGCGTTGGAGCAGAT	61.706	61.111	6.01	0.00	39.27	2.90
2003	2037	2.434884	CGGCGTTGGAGCAGATGT	60.435	61.111	0.00	0.00	39.27	3.06
2044	2078	4.194640	CAAGGATACATGTCCACCTCAAG	58.805	47.826	0.00	0.94	40.90	3.02
2053	2087	1.067295	TCCACCTCAAGGATGTTGCT	58.933	50.000	2.30	0.00	38.94	3.91
2086	2120	1.305930	CCCCGCTTAAACAGACTGGC	61.306	60.000	7.51	0.00	0.00	4.85
2127	2161	5.450137	GCGCTATTTGTCAACTAGGACTAGA	60.450	44.000	13.00	0.00	38.61	2.43
2154	2189	1.676678	ATGGGCGTCTGCGTCTGTAT	61.677	55.000	0.00	0.00	43.14	2.29
2165	2200	6.071463	GTCTGCGTCTGTATTGTGTTAAAAG	58.929	40.000	0.00	0.00	0.00	2.27
2171	2207	8.440833	GCGTCTGTATTGTGTTAAAAGAACTAT	58.559	33.333	0.00	0.00	0.00	2.12
2199	2235	3.808728	TGTAAATGCTCCTCCTATGCAC	58.191	45.455	0.00	0.00	39.63	4.57
2207	2243	3.628032	GCTCCTCCTATGCACCTTTTTAC	59.372	47.826	0.00	0.00	0.00	2.01
2209	2245	5.249780	TCCTCCTATGCACCTTTTTACAA	57.750	39.130	0.00	0.00	0.00	2.41
2219	2255	4.732355	GCACCTTTTTACAAGCGAACTGAA	60.732	41.667	0.00	0.00	0.00	3.02
2221	2257	3.966218	CCTTTTTACAAGCGAACTGAACG	59.034	43.478	0.00	0.00	0.00	3.95
2251	2287	8.365060	TCAAATGATTGGGTTTCATAGAACAT	57.635	30.769	0.00	0.00	37.15	2.71
2282	2318	9.920946	AGATTTAAGTCCTAAATTTGGCATAGA	57.079	29.630	0.00	0.00	39.79	1.98
2299	2335	4.984785	GCATAGATTCTCGCATGTCAGTTA	59.015	41.667	0.00	0.00	0.00	2.24
2303	2339	6.208988	AGATTCTCGCATGTCAGTTAAGTA	57.791	37.500	0.00	0.00	0.00	2.24
2310	2346	6.631016	TCGCATGTCAGTTAAGTAGAAAGAT	58.369	36.000	0.00	0.00	0.00	2.40
2313	2349	7.702772	CGCATGTCAGTTAAGTAGAAAGATACT	59.297	37.037	0.00	0.00	37.61	2.12
2317	2353	9.924650	TGTCAGTTAAGTAGAAAGATACTTTCC	57.075	33.333	17.04	6.53	42.05	3.13

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
174	177	4.647424	TTTCTTGTTACAACCTTGCCAG	57.353	40.909	0.00	0.00	0.00	4.85
206	209	1.337118	TCTGCCCCATTTGACCAAAC	58.663	50.000	0.00	0.00	32.51	2.93
703	714	1.981259	AGCCCCCAGTATACTTGGTT	58.019	50.000	19.01	8.77	0.00	3.67
831	842	5.951747	AGATAGCTGCCACAGGAAAATTTTA	59.048	36.000	2.75	0.00	31.21	1.52
946	957	3.559655	GGACAAGTGAAAAACAAATGCCC	59.440	43.478	0.00	0.00	0.00	5.36
1021	1032	6.861065	ATATTGCCAGTAACTATTTGGACG	57.139	37.500	0.00	0.00	33.76	4.79
1128	1139	3.728385	AAGGTGGCTTGATTTCTAGCT	57.272	42.857	12.51	0.00	42.80	3.32
1139	1150	3.631250	TGTTTCTTCTCAAAGGTGGCTT	58.369	40.909	0.00	0.00	33.03	4.35
1353	1368	0.607489	AGCGGCAACTCTGAAAGCAT	60.607	50.000	1.45	0.00	0.00	3.79
1461	1481	4.062293	CGAAAACCTGACAACACCATAGA	58.938	43.478	0.00	0.00	0.00	1.98
1486	1506	1.208259	CATCGAATCGAACGCCATGA	58.792	50.000	10.12	0.00	39.99	3.07
1498	1518	1.876714	CGTTCGCCCGACATCGAAT	60.877	57.895	2.09	0.00	44.86	3.34
1531	1551	3.616721	AGCGAGTTCGGGCACTGT	61.617	61.111	3.50	0.00	40.23	3.55
1596	1617	4.387598	CCCTTTCCATTGCAAATGAACAA	58.612	39.130	1.71	0.00	0.00	2.83
1597	1618	3.244491	CCCCTTTCCATTGCAAATGAACA	60.244	43.478	1.71	0.65	0.00	3.18
1642	1675	0.969894	GGGGTGATGTCGGAGATAGG	59.030	60.000	0.00	0.00	40.67	2.57
1646	1679	2.039418	CTATTGGGGTGATGTCGGAGA	58.961	52.381	0.00	0.00	0.00	3.71
1647	1680	2.039418	TCTATTGGGGTGATGTCGGAG	58.961	52.381	0.00	0.00	0.00	4.63
1648	1681	1.760613	GTCTATTGGGGTGATGTCGGA	59.239	52.381	0.00	0.00	0.00	4.55
1649	1682	1.484653	TGTCTATTGGGGTGATGTCGG	59.515	52.381	0.00	0.00	0.00	4.79
1650	1683	2.550978	GTGTCTATTGGGGTGATGTCG	58.449	52.381	0.00	0.00	0.00	4.35
1651	1684	2.741878	CGGTGTCTATTGGGGTGATGTC	60.742	54.545	0.00	0.00	0.00	3.06
1652	1685	1.209504	CGGTGTCTATTGGGGTGATGT	59.790	52.381	0.00	0.00	0.00	3.06
1653	1686	1.484653	TCGGTGTCTATTGGGGTGATG	59.515	52.381	0.00	0.00	0.00	3.07
1654	1687	1.874129	TCGGTGTCTATTGGGGTGAT	58.126	50.000	0.00	0.00	0.00	3.06
1655	1688	1.646912	TTCGGTGTCTATTGGGGTGA	58.353	50.000	0.00	0.00	0.00	4.02
1656	1689	2.027561	TCTTTCGGTGTCTATTGGGGTG	60.028	50.000	0.00	0.00	0.00	4.61
1657	1690	2.262637	TCTTTCGGTGTCTATTGGGGT	58.737	47.619	0.00	0.00	0.00	4.95
1658	1691	3.343941	TTCTTTCGGTGTCTATTGGGG	57.656	47.619	0.00	0.00	0.00	4.96
1659	1692	5.699097	TTTTTCTTTCGGTGTCTATTGGG	57.301	39.130	0.00	0.00	0.00	4.12
1660	1693	9.685828	TTTTATTTTTCTTTCGGTGTCTATTGG	57.314	29.630	0.00	0.00	0.00	3.16
1665	1698	9.410556	CATCATTTTATTTTTCTTTCGGTGTCT	57.589	29.630	0.00	0.00	0.00	3.41
1666	1699	9.405587	TCATCATTTTATTTTTCTTTCGGTGTC	57.594	29.630	0.00	0.00	0.00	3.67
1667	1700	9.410556	CTCATCATTTTATTTTTCTTTCGGTGT	57.589	29.630	0.00	0.00	0.00	4.16
1668	1701	9.410556	ACTCATCATTTTATTTTTCTTTCGGTG	57.589	29.630	0.00	0.00	0.00	4.94
1669	1702	9.626045	GACTCATCATTTTATTTTTCTTTCGGT	57.374	29.630	0.00	0.00	0.00	4.69
1670	1703	9.624697	TGACTCATCATTTTATTTTTCTTTCGG	57.375	29.630	0.00	0.00	0.00	4.30
1693	1726	0.966370	AGCTCGGGTGTAGAGGTGAC	60.966	60.000	0.00	0.00	43.78	3.67
1701	1734	3.807538	GCGTCGAGCTCGGGTGTA	61.808	66.667	33.98	13.46	44.04	2.90
1720	1753	1.077123	CTGCATATCAGCGATGGAGC	58.923	55.000	0.00	0.53	36.19	4.70
1763	1796	4.320870	ACGGTAATCGGTTCACTTTGATT	58.679	39.130	0.00	0.00	44.45	2.57
1825	1858	2.828520	GGAGTGTCAGATCTGGAGTTCA	59.171	50.000	22.42	11.05	0.00	3.18
1871	1905	3.382227	TGATGGATGACATGCATGGTTTC	59.618	43.478	29.41	20.46	41.66	2.78
1879	1913	2.093890	TGTGGTTGATGGATGACATGC	58.906	47.619	0.00	0.00	40.72	4.06
1899	1933	1.895131	GGTGGAACATGTGCTGGATTT	59.105	47.619	3.21	0.00	44.52	2.17
1902	1936	0.478072	AAGGTGGAACATGTGCTGGA	59.522	50.000	3.21	0.00	44.52	3.86
1918	1952	1.560923	CGTCAACGGCATCTAGAAGG	58.439	55.000	0.00	0.00	35.37	3.46
1929	1963	1.227999	ATTGTGGTCTGCGTCAACGG	61.228	55.000	4.54	0.00	40.23	4.44
1933	1967	3.215642	CAGATTGTGGTCTGCGTCA	57.784	52.632	0.00	0.00	39.19	4.35
1984	2018	3.706373	ATCTGCTCCAACGCCGGT	61.706	61.111	1.90	0.00	0.00	5.28
1989	2023	1.406219	CGACGACATCTGCTCCAACG	61.406	60.000	0.00	0.00	0.00	4.10
2023	2057	3.200825	CCTTGAGGTGGACATGTATCCTT	59.799	47.826	14.40	0.00	39.75	3.36
2028	2062	3.181329	ACATCCTTGAGGTGGACATGTA	58.819	45.455	0.00	0.00	36.30	2.29
2044	2078	4.120331	GTGGCGGCAGCAACATCC	62.120	66.667	13.91	0.00	46.47	3.51
2086	2120	0.820891	CGCCCTGATGGATTTGGGAG	60.821	60.000	0.00	0.00	42.11	4.30
2127	2161	0.179073	GCAGACGCCCATACACATCT	60.179	55.000	0.00	0.00	0.00	2.90
2171	2207	9.231297	GCATAGGAGGAGCATTTACATTATTAA	57.769	33.333	0.00	0.00	0.00	1.40
2177	2213	4.392940	GTGCATAGGAGGAGCATTTACAT	58.607	43.478	0.00	0.00	40.78	2.29
2182	2218	1.516110	AGGTGCATAGGAGGAGCATT	58.484	50.000	0.00	0.00	40.78	3.56
2199	2235	3.966218	CGTTCAGTTCGCTTGTAAAAAGG	59.034	43.478	0.00	0.00	0.00	3.11
2207	2243	2.792674	TGAGTTACGTTCAGTTCGCTTG	59.207	45.455	0.00	0.00	0.00	4.01
2209	2245	2.787601	TGAGTTACGTTCAGTTCGCT	57.212	45.000	0.00	0.00	0.00	4.93
2219	2255	5.533154	TGAAACCCAATCATTTGAGTTACGT	59.467	36.000	0.00	0.00	33.20	3.57
2221	2257	8.956426	TCTATGAAACCCAATCATTTGAGTTAC	58.044	33.333	0.00	0.00	33.20	2.50
2245	2281	9.807921	TTTAGGACTTAAATCTTGGAATGTTCT	57.192	29.630	0.00	0.00	0.00	3.01
2251	2287	8.311109	GCCAAATTTAGGACTTAAATCTTGGAA	58.689	33.333	26.39	0.00	42.85	3.53
2272	2308	3.544684	ACATGCGAGAATCTATGCCAAA	58.455	40.909	4.78	0.00	32.70	3.28
2282	2318	6.208988	TCTACTTAACTGACATGCGAGAAT	57.791	37.500	0.00	0.00	0.00	2.40
2299	2335	9.945904	AATCGAAAGGAAAGTATCTTTCTACTT	57.054	29.630	17.71	12.26	43.79	2.24
2303	2339	8.248945	TCGTAATCGAAAGGAAAGTATCTTTCT	58.751	33.333	17.71	3.18	43.79	2.52

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.