Multiple sequence alignment - TraesCS4A01G004000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G004000 chr4A 100.000 4454 0 0 1 4454 2949322 2944869 0.000000e+00 8226.0
1 TraesCS4A01G004000 chr4D 93.169 3806 121 49 695 4454 468595216 468598928 0.000000e+00 5459.0
2 TraesCS4A01G004000 chr4D 84.689 209 11 9 600 795 468594447 468594647 5.880000e-44 189.0
3 TraesCS4A01G004000 chr4B 94.310 1652 45 18 695 2327 588195024 588196645 0.000000e+00 2484.0
4 TraesCS4A01G004000 chr4B 90.162 864 55 11 2364 3206 588196641 588197495 0.000000e+00 1098.0
5 TraesCS4A01G004000 chr4B 95.111 675 21 10 3786 4454 588198709 588199377 0.000000e+00 1053.0
6 TraesCS4A01G004000 chr4B 93.096 478 18 7 3200 3676 588197878 588198341 0.000000e+00 686.0
7 TraesCS4A01G004000 chr4B 95.238 63 3 0 3689 3751 588198451 588198513 2.830000e-17 100.0
8 TraesCS4A01G004000 chr4B 97.297 37 1 0 3749 3785 588198626 588198662 3.720000e-06 63.9
9 TraesCS4A01G004000 chr3D 86.774 310 37 4 1 308 283306651 283306958 4.270000e-90 342.0
10 TraesCS4A01G004000 chr3B 83.287 359 43 6 22 365 819808243 819807887 9.300000e-82 315.0
11 TraesCS4A01G004000 chr2D 85.113 309 44 2 1 308 430470054 430470361 9.300000e-82 315.0
12 TraesCS4A01G004000 chr6B 85.065 308 43 3 1 306 696644070 696643764 1.200000e-80 311.0
13 TraesCS4A01G004000 chr7D 82.162 370 54 9 1 365 179526182 179525820 1.560000e-79 307.0
14 TraesCS4A01G004000 chr7B 83.861 316 50 1 1 316 145727621 145727307 2.600000e-77 300.0
15 TraesCS4A01G004000 chr5B 84.091 308 47 2 1 306 568400840 568400533 3.370000e-76 296.0
16 TraesCS4A01G004000 chr3A 84.281 299 46 1 1 298 370215210 370215508 1.570000e-74 291.0
17 TraesCS4A01G004000 chr5A 83.279 305 50 1 2 306 304454128 304453825 3.390000e-71 279.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G004000 chr4A 2944869 2949322 4453 True 8226.00 8226 100.000000 1 4454 1 chr4A.!!$R1 4453
1 TraesCS4A01G004000 chr4D 468594447 468598928 4481 False 2824.00 5459 88.929000 600 4454 2 chr4D.!!$F1 3854
2 TraesCS4A01G004000 chr4B 588195024 588199377 4353 False 914.15 2484 94.202333 695 4454 6 chr4B.!!$F1 3759

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
44 45 0.034756 CCGAGAACACATGTCCACCA 59.965 55.000 0.00 0.0 0.00 4.17 F
394 395 0.037160 TTTCCCTGTCCCGGCTAAAC 59.963 55.000 0.00 0.0 0.00 2.01 F
396 397 0.041535 TCCCTGTCCCGGCTAAACTA 59.958 55.000 0.00 0.0 0.00 2.24 F
592 593 0.168128 AAAATGCGAGCGCCTTACAC 59.832 50.000 12.70 0.0 41.09 2.90 F
742 743 0.178990 GACCCCTTCAACCTTGCACT 60.179 55.000 0.00 0.0 0.00 4.40 F
1176 1886 0.947180 CGTTGGTTGATCCGTCCGTT 60.947 55.000 0.00 0.0 39.52 4.44 F
1827 2541 1.146263 CCATGGAGACCCCTAACGC 59.854 63.158 5.56 0.0 35.38 4.84 F
3206 3950 0.891373 CGCTCAGTTTCTCCTCCTCA 59.109 55.000 0.00 0.0 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1158 1861 1.069500 CAAACGGACGGATCAACCAAC 60.069 52.381 0.00 0.00 38.90 3.77 R
2193 2907 2.045045 TTCCCGGCCAGCTGAATG 60.045 61.111 17.39 3.52 0.00 2.67 R
2355 3069 5.538118 TGAAAGTACCTACATATCGGCATG 58.462 41.667 0.00 0.00 0.00 4.06 R
2374 3088 8.853077 AGATGATGACAATTTACAGTCTGAAA 57.147 30.769 6.91 3.60 35.81 2.69 R
2611 3337 2.028112 GGATGCTTACAGTGACAGGACA 60.028 50.000 0.00 0.00 0.00 4.02 R
3125 3869 1.139734 GATCGCTCCGCTGAACTGA 59.860 57.895 0.00 0.00 0.00 3.41 R
3345 4478 1.202110 GGAGCGATTCGTTACTCGTCA 60.202 52.381 8.03 0.00 40.80 4.35 R
4068 5473 1.556911 ACGAGGAAATGGAGTGAGCAT 59.443 47.619 0.00 0.00 0.00 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.764336 CGCCGCCGTAACGACAGA 62.764 66.667 0.00 0.00 34.06 3.41
23 24 2.879462 GCCGCCGTAACGACAGAG 60.879 66.667 0.00 0.00 34.06 3.35
24 25 2.879462 CCGCCGTAACGACAGAGC 60.879 66.667 0.00 0.00 34.06 4.09
25 26 2.879462 CGCCGTAACGACAGAGCC 60.879 66.667 0.00 0.00 34.06 4.70
26 27 2.508663 GCCGTAACGACAGAGCCC 60.509 66.667 0.00 0.00 0.00 5.19
27 28 2.202570 CCGTAACGACAGAGCCCG 60.203 66.667 0.00 0.00 0.00 6.13
28 29 2.693762 CCGTAACGACAGAGCCCGA 61.694 63.158 0.00 0.00 0.00 5.14
29 30 1.226323 CGTAACGACAGAGCCCGAG 60.226 63.158 0.00 0.00 0.00 4.63
30 31 1.642037 CGTAACGACAGAGCCCGAGA 61.642 60.000 0.00 0.00 0.00 4.04
31 32 0.524862 GTAACGACAGAGCCCGAGAA 59.475 55.000 0.00 0.00 0.00 2.87
32 33 0.524862 TAACGACAGAGCCCGAGAAC 59.475 55.000 0.00 0.00 0.00 3.01
33 34 1.461091 AACGACAGAGCCCGAGAACA 61.461 55.000 0.00 0.00 0.00 3.18
34 35 1.444553 CGACAGAGCCCGAGAACAC 60.445 63.158 0.00 0.00 0.00 3.32
35 36 1.666011 GACAGAGCCCGAGAACACA 59.334 57.895 0.00 0.00 0.00 3.72
36 37 0.247736 GACAGAGCCCGAGAACACAT 59.752 55.000 0.00 0.00 0.00 3.21
37 38 0.036952 ACAGAGCCCGAGAACACATG 60.037 55.000 0.00 0.00 0.00 3.21
38 39 0.036952 CAGAGCCCGAGAACACATGT 60.037 55.000 0.00 0.00 0.00 3.21
39 40 0.247736 AGAGCCCGAGAACACATGTC 59.752 55.000 0.00 0.00 0.00 3.06
40 41 0.741221 GAGCCCGAGAACACATGTCC 60.741 60.000 0.00 0.00 0.00 4.02
41 42 1.003839 GCCCGAGAACACATGTCCA 60.004 57.895 0.00 0.00 0.00 4.02
42 43 1.298859 GCCCGAGAACACATGTCCAC 61.299 60.000 0.00 0.00 0.00 4.02
43 44 0.673644 CCCGAGAACACATGTCCACC 60.674 60.000 0.00 0.00 0.00 4.61
44 45 0.034756 CCGAGAACACATGTCCACCA 59.965 55.000 0.00 0.00 0.00 4.17
45 46 1.148310 CGAGAACACATGTCCACCAC 58.852 55.000 0.00 0.00 0.00 4.16
46 47 1.148310 GAGAACACATGTCCACCACG 58.852 55.000 0.00 0.00 0.00 4.94
47 48 0.756294 AGAACACATGTCCACCACGA 59.244 50.000 0.00 0.00 0.00 4.35
48 49 1.148310 GAACACATGTCCACCACGAG 58.852 55.000 0.00 0.00 0.00 4.18
49 50 0.250295 AACACATGTCCACCACGAGG 60.250 55.000 0.00 0.00 42.21 4.63
50 51 1.118965 ACACATGTCCACCACGAGGA 61.119 55.000 5.68 0.00 38.69 3.71
51 52 0.250234 CACATGTCCACCACGAGGAT 59.750 55.000 5.68 0.00 37.52 3.24
52 53 1.480545 CACATGTCCACCACGAGGATA 59.519 52.381 5.68 0.00 37.52 2.59
53 54 2.103094 CACATGTCCACCACGAGGATAT 59.897 50.000 5.68 0.35 37.45 1.63
54 55 2.365617 ACATGTCCACCACGAGGATATC 59.634 50.000 5.68 0.00 35.14 1.63
63 64 2.126424 GAGGATATCGACGCCGCC 60.126 66.667 0.00 0.00 35.37 6.13
64 65 3.948086 GAGGATATCGACGCCGCCG 62.948 68.421 0.00 0.00 41.14 6.46
66 67 4.994201 GATATCGACGCCGCCGCA 62.994 66.667 0.00 0.00 38.22 5.69
78 79 3.064324 GCCGCACCATCCTTGCTT 61.064 61.111 0.00 0.00 37.87 3.91
79 80 2.879907 CCGCACCATCCTTGCTTG 59.120 61.111 0.00 0.00 37.87 4.01
80 81 1.675310 CCGCACCATCCTTGCTTGA 60.675 57.895 0.00 0.00 37.87 3.02
81 82 1.243342 CCGCACCATCCTTGCTTGAA 61.243 55.000 0.00 0.00 37.87 2.69
82 83 0.109597 CGCACCATCCTTGCTTGAAC 60.110 55.000 0.00 0.00 37.87 3.18
83 84 0.961019 GCACCATCCTTGCTTGAACA 59.039 50.000 0.00 0.00 37.00 3.18
84 85 1.068055 GCACCATCCTTGCTTGAACAG 60.068 52.381 0.00 0.00 37.00 3.16
85 86 2.507484 CACCATCCTTGCTTGAACAGA 58.493 47.619 0.00 0.00 0.00 3.41
86 87 2.227388 CACCATCCTTGCTTGAACAGAC 59.773 50.000 0.00 0.00 0.00 3.51
87 88 2.107204 ACCATCCTTGCTTGAACAGACT 59.893 45.455 0.00 0.00 0.00 3.24
88 89 2.486982 CCATCCTTGCTTGAACAGACTG 59.513 50.000 0.00 0.00 0.00 3.51
89 90 2.260844 TCCTTGCTTGAACAGACTGG 57.739 50.000 7.51 0.00 0.00 4.00
90 91 1.768275 TCCTTGCTTGAACAGACTGGA 59.232 47.619 7.51 0.00 0.00 3.86
91 92 2.373169 TCCTTGCTTGAACAGACTGGAT 59.627 45.455 7.51 0.00 0.00 3.41
92 93 3.152341 CCTTGCTTGAACAGACTGGATT 58.848 45.455 7.51 0.00 0.00 3.01
93 94 3.190118 CCTTGCTTGAACAGACTGGATTC 59.810 47.826 7.51 3.24 0.00 2.52
94 95 2.783135 TGCTTGAACAGACTGGATTCC 58.217 47.619 7.51 0.00 0.00 3.01
95 96 2.106338 TGCTTGAACAGACTGGATTCCA 59.894 45.455 7.51 5.05 0.00 3.53
96 97 3.149196 GCTTGAACAGACTGGATTCCAA 58.851 45.455 6.88 2.88 30.80 3.53
97 98 3.569701 GCTTGAACAGACTGGATTCCAAA 59.430 43.478 6.88 0.00 30.80 3.28
98 99 4.219288 GCTTGAACAGACTGGATTCCAAAT 59.781 41.667 6.88 0.00 30.80 2.32
99 100 5.620879 GCTTGAACAGACTGGATTCCAAATC 60.621 44.000 6.88 7.59 30.80 2.17
100 101 4.335416 TGAACAGACTGGATTCCAAATCC 58.665 43.478 6.88 11.06 38.66 3.01
101 102 4.202556 TGAACAGACTGGATTCCAAATCCA 60.203 41.667 17.95 17.95 45.24 3.41
102 103 4.598036 ACAGACTGGATTCCAAATCCAT 57.402 40.909 18.98 11.03 46.12 3.41
103 104 4.530875 ACAGACTGGATTCCAAATCCATC 58.469 43.478 18.98 17.04 46.12 3.51
104 105 4.018141 ACAGACTGGATTCCAAATCCATCA 60.018 41.667 18.98 0.54 46.12 3.07
105 106 4.337555 CAGACTGGATTCCAAATCCATCAC 59.662 45.833 18.98 13.61 46.12 3.06
106 107 3.633986 GACTGGATTCCAAATCCATCACC 59.366 47.826 18.98 7.57 46.12 4.02
107 108 3.011595 ACTGGATTCCAAATCCATCACCA 59.988 43.478 18.98 0.00 46.12 4.17
108 109 4.025360 CTGGATTCCAAATCCATCACCAA 58.975 43.478 18.98 0.00 46.12 3.67
109 110 3.768757 TGGATTCCAAATCCATCACCAAC 59.231 43.478 15.68 0.00 42.81 3.77
110 111 3.132824 GGATTCCAAATCCATCACCAACC 59.867 47.826 12.74 0.00 38.09 3.77
111 112 2.988636 TCCAAATCCATCACCAACCA 57.011 45.000 0.00 0.00 0.00 3.67
112 113 3.471430 TCCAAATCCATCACCAACCAT 57.529 42.857 0.00 0.00 0.00 3.55
113 114 4.599720 TCCAAATCCATCACCAACCATA 57.400 40.909 0.00 0.00 0.00 2.74
114 115 4.535781 TCCAAATCCATCACCAACCATAG 58.464 43.478 0.00 0.00 0.00 2.23
115 116 3.638160 CCAAATCCATCACCAACCATAGG 59.362 47.826 0.00 0.00 0.00 2.57
116 117 4.535781 CAAATCCATCACCAACCATAGGA 58.464 43.478 0.00 0.00 0.00 2.94
117 118 3.864789 ATCCATCACCAACCATAGGAC 57.135 47.619 0.00 0.00 0.00 3.85
118 119 2.845659 TCCATCACCAACCATAGGACT 58.154 47.619 0.00 0.00 0.00 3.85
119 120 2.505407 TCCATCACCAACCATAGGACTG 59.495 50.000 0.00 0.00 0.00 3.51
120 121 2.505407 CCATCACCAACCATAGGACTGA 59.495 50.000 0.00 0.00 0.00 3.41
121 122 3.137176 CCATCACCAACCATAGGACTGAT 59.863 47.826 0.00 0.00 0.00 2.90
122 123 4.384056 CATCACCAACCATAGGACTGATC 58.616 47.826 0.00 0.00 0.00 2.92
123 124 3.449918 TCACCAACCATAGGACTGATCA 58.550 45.455 0.00 0.00 0.00 2.92
124 125 3.197766 TCACCAACCATAGGACTGATCAC 59.802 47.826 0.00 0.00 0.00 3.06
125 126 2.505819 ACCAACCATAGGACTGATCACC 59.494 50.000 0.00 0.00 0.00 4.02
126 127 2.774234 CCAACCATAGGACTGATCACCT 59.226 50.000 9.64 9.64 39.95 4.00
127 128 3.181461 CCAACCATAGGACTGATCACCTC 60.181 52.174 8.11 0.00 37.68 3.85
128 129 2.311463 ACCATAGGACTGATCACCTCG 58.689 52.381 8.11 2.27 37.68 4.63
129 130 2.311463 CCATAGGACTGATCACCTCGT 58.689 52.381 8.11 0.00 37.68 4.18
130 131 2.294791 CCATAGGACTGATCACCTCGTC 59.705 54.545 8.11 6.25 37.68 4.20
131 132 1.664873 TAGGACTGATCACCTCGTCG 58.335 55.000 8.11 0.00 37.68 5.12
132 133 1.032657 AGGACTGATCACCTCGTCGG 61.033 60.000 0.00 0.00 39.35 4.79
133 134 1.030488 GGACTGATCACCTCGTCGGA 61.030 60.000 6.71 0.00 36.31 4.55
134 135 0.378962 GACTGATCACCTCGTCGGAG 59.621 60.000 0.00 0.00 40.14 4.63
135 136 0.322636 ACTGATCACCTCGTCGGAGT 60.323 55.000 0.00 0.00 38.70 3.85
136 137 1.065636 ACTGATCACCTCGTCGGAGTA 60.066 52.381 0.00 0.00 38.70 2.59
137 138 1.600013 CTGATCACCTCGTCGGAGTAG 59.400 57.143 0.00 0.00 38.70 2.57
138 139 0.945813 GATCACCTCGTCGGAGTAGG 59.054 60.000 4.42 4.42 38.70 3.18
139 140 0.545171 ATCACCTCGTCGGAGTAGGA 59.455 55.000 11.51 0.00 38.70 2.94
140 141 0.545171 TCACCTCGTCGGAGTAGGAT 59.455 55.000 11.51 0.00 38.70 3.24
141 142 0.945813 CACCTCGTCGGAGTAGGATC 59.054 60.000 11.51 0.00 38.70 3.36
142 143 0.838608 ACCTCGTCGGAGTAGGATCT 59.161 55.000 11.51 0.00 38.70 2.75
143 144 1.231221 CCTCGTCGGAGTAGGATCTG 58.769 60.000 0.17 0.00 38.70 2.90
144 145 1.202663 CCTCGTCGGAGTAGGATCTGA 60.203 57.143 0.17 0.00 38.70 3.27
145 146 2.139917 CTCGTCGGAGTAGGATCTGAG 58.860 57.143 0.00 0.00 35.26 3.35
146 147 1.202663 TCGTCGGAGTAGGATCTGAGG 60.203 57.143 0.00 0.00 40.32 3.86
147 148 1.202663 CGTCGGAGTAGGATCTGAGGA 60.203 57.143 0.00 0.00 41.07 3.71
148 149 2.500229 GTCGGAGTAGGATCTGAGGAG 58.500 57.143 0.00 0.00 35.26 3.69
149 150 2.105134 GTCGGAGTAGGATCTGAGGAGA 59.895 54.545 0.00 0.00 35.26 3.71
150 151 2.105134 TCGGAGTAGGATCTGAGGAGAC 59.895 54.545 0.00 0.00 30.95 3.36
152 153 3.434453 CGGAGTAGGATCTGAGGAGACTT 60.434 52.174 0.00 0.00 44.43 3.01
153 154 4.142038 GGAGTAGGATCTGAGGAGACTTC 58.858 52.174 0.00 0.00 44.43 3.01
154 155 4.385865 GGAGTAGGATCTGAGGAGACTTCA 60.386 50.000 0.00 0.00 44.43 3.02
155 156 5.385198 GAGTAGGATCTGAGGAGACTTCAT 58.615 45.833 0.00 0.00 44.43 2.57
156 157 5.776358 AGTAGGATCTGAGGAGACTTCATT 58.224 41.667 0.00 0.00 44.43 2.57
157 158 5.833131 AGTAGGATCTGAGGAGACTTCATTC 59.167 44.000 0.00 0.00 44.43 2.67
158 159 4.618635 AGGATCTGAGGAGACTTCATTCA 58.381 43.478 0.00 0.00 44.43 2.57
159 160 4.650588 AGGATCTGAGGAGACTTCATTCAG 59.349 45.833 0.00 0.00 44.43 3.02
160 161 3.883830 TCTGAGGAGACTTCATTCAGC 57.116 47.619 0.00 0.00 44.43 4.26
161 162 2.165234 TCTGAGGAGACTTCATTCAGCG 59.835 50.000 0.00 0.00 44.43 5.18
162 163 1.285578 GAGGAGACTTCATTCAGCGC 58.714 55.000 0.00 0.00 44.43 5.92
163 164 0.901124 AGGAGACTTCATTCAGCGCT 59.099 50.000 2.64 2.64 37.44 5.92
164 165 1.005340 GGAGACTTCATTCAGCGCTG 58.995 55.000 31.53 31.53 0.00 5.18
165 166 1.674221 GGAGACTTCATTCAGCGCTGT 60.674 52.381 34.70 16.24 0.00 4.40
166 167 1.658095 GAGACTTCATTCAGCGCTGTC 59.342 52.381 34.70 23.03 0.00 3.51
167 168 1.001293 AGACTTCATTCAGCGCTGTCA 59.999 47.619 34.70 23.54 0.00 3.58
168 169 2.005451 GACTTCATTCAGCGCTGTCAT 58.995 47.619 34.70 24.62 0.00 3.06
169 170 2.005451 ACTTCATTCAGCGCTGTCATC 58.995 47.619 34.70 0.00 0.00 2.92
170 171 1.001624 TTCATTCAGCGCTGTCATCG 58.998 50.000 34.70 19.96 0.00 3.84
191 192 4.367023 CCGCCGAACCCAAGACGA 62.367 66.667 0.00 0.00 0.00 4.20
192 193 2.125673 CGCCGAACCCAAGACGAT 60.126 61.111 0.00 0.00 0.00 3.73
193 194 2.452813 CGCCGAACCCAAGACGATG 61.453 63.158 0.00 0.00 0.00 3.84
194 195 1.079405 GCCGAACCCAAGACGATGA 60.079 57.895 0.00 0.00 0.00 2.92
195 196 0.672401 GCCGAACCCAAGACGATGAA 60.672 55.000 0.00 0.00 0.00 2.57
196 197 1.076332 CCGAACCCAAGACGATGAAC 58.924 55.000 0.00 0.00 0.00 3.18
197 198 1.606994 CCGAACCCAAGACGATGAACA 60.607 52.381 0.00 0.00 0.00 3.18
198 199 2.139917 CGAACCCAAGACGATGAACAA 58.860 47.619 0.00 0.00 0.00 2.83
199 200 2.096417 CGAACCCAAGACGATGAACAAC 60.096 50.000 0.00 0.00 0.00 3.32
200 201 1.892209 ACCCAAGACGATGAACAACC 58.108 50.000 0.00 0.00 0.00 3.77
201 202 1.420138 ACCCAAGACGATGAACAACCT 59.580 47.619 0.00 0.00 0.00 3.50
202 203 2.635915 ACCCAAGACGATGAACAACCTA 59.364 45.455 0.00 0.00 0.00 3.08
203 204 3.071892 ACCCAAGACGATGAACAACCTAA 59.928 43.478 0.00 0.00 0.00 2.69
204 205 4.069304 CCCAAGACGATGAACAACCTAAA 58.931 43.478 0.00 0.00 0.00 1.85
205 206 4.517453 CCCAAGACGATGAACAACCTAAAA 59.483 41.667 0.00 0.00 0.00 1.52
206 207 5.009210 CCCAAGACGATGAACAACCTAAAAA 59.991 40.000 0.00 0.00 0.00 1.94
207 208 5.912955 CCAAGACGATGAACAACCTAAAAAC 59.087 40.000 0.00 0.00 0.00 2.43
208 209 6.238648 CCAAGACGATGAACAACCTAAAAACT 60.239 38.462 0.00 0.00 0.00 2.66
209 210 7.041644 CCAAGACGATGAACAACCTAAAAACTA 60.042 37.037 0.00 0.00 0.00 2.24
210 211 8.339714 CAAGACGATGAACAACCTAAAAACTAA 58.660 33.333 0.00 0.00 0.00 2.24
211 212 8.617290 AGACGATGAACAACCTAAAAACTAAT 57.383 30.769 0.00 0.00 0.00 1.73
212 213 8.718734 AGACGATGAACAACCTAAAAACTAATC 58.281 33.333 0.00 0.00 0.00 1.75
213 214 8.617290 ACGATGAACAACCTAAAAACTAATCT 57.383 30.769 0.00 0.00 0.00 2.40
214 215 9.715121 ACGATGAACAACCTAAAAACTAATCTA 57.285 29.630 0.00 0.00 0.00 1.98
215 216 9.968743 CGATGAACAACCTAAAAACTAATCTAC 57.031 33.333 0.00 0.00 0.00 2.59
221 222 9.636789 ACAACCTAAAAACTAATCTACTTTGGT 57.363 29.630 0.00 0.00 0.00 3.67
235 236 9.668497 AATCTACTTTGGTCTAAAACTATCCAC 57.332 33.333 0.00 0.00 0.00 4.02
236 237 7.318141 TCTACTTTGGTCTAAAACTATCCACG 58.682 38.462 0.00 0.00 0.00 4.94
237 238 4.694037 ACTTTGGTCTAAAACTATCCACGC 59.306 41.667 0.00 0.00 0.00 5.34
238 239 2.883574 TGGTCTAAAACTATCCACGCG 58.116 47.619 3.53 3.53 0.00 6.01
239 240 1.591619 GGTCTAAAACTATCCACGCGC 59.408 52.381 5.73 0.00 0.00 6.86
240 241 2.264813 GTCTAAAACTATCCACGCGCA 58.735 47.619 5.73 0.00 0.00 6.09
241 242 2.864343 GTCTAAAACTATCCACGCGCAT 59.136 45.455 5.73 0.00 0.00 4.73
242 243 2.863740 TCTAAAACTATCCACGCGCATG 59.136 45.455 5.73 0.58 0.00 4.06
243 244 0.732571 AAAACTATCCACGCGCATGG 59.267 50.000 18.22 18.22 41.57 3.66
248 249 2.202919 TCCACGCGCATGGATCAG 60.203 61.111 23.35 0.00 44.14 2.90
249 250 3.274586 CCACGCGCATGGATCAGG 61.275 66.667 19.77 0.00 43.02 3.86
250 251 3.945434 CACGCGCATGGATCAGGC 61.945 66.667 5.73 0.00 37.83 4.85
255 256 2.592861 GCATGGATCAGGCGACCC 60.593 66.667 0.00 0.00 30.03 4.46
256 257 2.111878 CATGGATCAGGCGACCCC 59.888 66.667 0.00 0.00 0.00 4.95
257 258 2.366837 ATGGATCAGGCGACCCCA 60.367 61.111 0.00 0.00 35.39 4.96
258 259 2.746375 ATGGATCAGGCGACCCCAC 61.746 63.158 0.00 0.00 32.05 4.61
259 260 3.083997 GGATCAGGCGACCCCACT 61.084 66.667 0.00 0.00 35.39 4.00
260 261 2.501610 GATCAGGCGACCCCACTC 59.498 66.667 0.00 0.00 35.39 3.51
261 262 2.284625 ATCAGGCGACCCCACTCA 60.285 61.111 0.00 0.00 35.39 3.41
262 263 2.579684 GATCAGGCGACCCCACTCAC 62.580 65.000 0.00 0.00 35.39 3.51
263 264 4.394712 CAGGCGACCCCACTCACC 62.395 72.222 0.00 0.00 35.39 4.02
264 265 4.954118 AGGCGACCCCACTCACCA 62.954 66.667 0.00 0.00 35.39 4.17
265 266 4.394712 GGCGACCCCACTCACCAG 62.395 72.222 0.00 0.00 0.00 4.00
267 268 4.742201 CGACCCCACTCACCAGCG 62.742 72.222 0.00 0.00 0.00 5.18
268 269 3.311110 GACCCCACTCACCAGCGA 61.311 66.667 0.00 0.00 0.00 4.93
269 270 3.591254 GACCCCACTCACCAGCGAC 62.591 68.421 0.00 0.00 0.00 5.19
270 271 4.742201 CCCCACTCACCAGCGACG 62.742 72.222 0.00 0.00 0.00 5.12
271 272 3.680786 CCCACTCACCAGCGACGA 61.681 66.667 0.00 0.00 0.00 4.20
272 273 2.430921 CCACTCACCAGCGACGAC 60.431 66.667 0.00 0.00 0.00 4.34
273 274 2.430921 CACTCACCAGCGACGACC 60.431 66.667 0.00 0.00 0.00 4.79
274 275 4.039357 ACTCACCAGCGACGACCG 62.039 66.667 0.00 0.00 42.21 4.79
275 276 3.733960 CTCACCAGCGACGACCGA 61.734 66.667 0.00 0.00 41.76 4.69
276 277 3.669036 CTCACCAGCGACGACCGAG 62.669 68.421 0.00 0.00 41.76 4.63
277 278 4.778415 CACCAGCGACGACCGAGG 62.778 72.222 0.00 8.61 41.76 4.63
279 280 4.477975 CCAGCGACGACCGAGGTC 62.478 72.222 12.07 12.07 41.76 3.85
307 308 4.144703 GGGAGCCGTCGGAGGAAC 62.145 72.222 17.49 0.00 0.00 3.62
319 320 3.382832 AGGAACTCCCTGGCGACG 61.383 66.667 0.00 0.00 45.61 5.12
320 321 4.452733 GGAACTCCCTGGCGACGG 62.453 72.222 0.00 0.00 0.00 4.79
333 334 4.814294 GACGGGCGTTGGCGAGAT 62.814 66.667 0.00 0.00 41.24 2.75
334 335 4.814294 ACGGGCGTTGGCGAGATC 62.814 66.667 0.00 0.00 41.24 2.75
348 349 2.814269 CGAGATCGCAATTTCCTCTGA 58.186 47.619 0.00 0.00 0.00 3.27
349 350 2.793790 CGAGATCGCAATTTCCTCTGAG 59.206 50.000 0.00 0.00 0.00 3.35
350 351 3.489908 CGAGATCGCAATTTCCTCTGAGA 60.490 47.826 6.17 0.00 0.00 3.27
351 352 4.050553 GAGATCGCAATTTCCTCTGAGAG 58.949 47.826 6.17 1.57 0.00 3.20
364 365 4.775058 CTCTGAGAGGAAGAAAGAACGA 57.225 45.455 0.36 0.00 0.00 3.85
365 366 4.481463 CTCTGAGAGGAAGAAAGAACGAC 58.519 47.826 0.36 0.00 0.00 4.34
366 367 4.145807 TCTGAGAGGAAGAAAGAACGACT 58.854 43.478 0.00 0.00 0.00 4.18
367 368 4.585162 TCTGAGAGGAAGAAAGAACGACTT 59.415 41.667 0.00 0.00 40.98 3.01
368 369 4.621991 TGAGAGGAAGAAAGAACGACTTG 58.378 43.478 0.00 0.00 38.98 3.16
369 370 4.341235 TGAGAGGAAGAAAGAACGACTTGA 59.659 41.667 0.00 0.00 38.98 3.02
370 371 5.011125 TGAGAGGAAGAAAGAACGACTTGAT 59.989 40.000 0.00 0.00 38.98 2.57
371 372 5.474825 AGAGGAAGAAAGAACGACTTGATC 58.525 41.667 0.00 0.00 38.98 2.92
372 373 5.011125 AGAGGAAGAAAGAACGACTTGATCA 59.989 40.000 0.00 0.00 38.98 2.92
373 374 5.799213 AGGAAGAAAGAACGACTTGATCAT 58.201 37.500 0.00 0.00 38.98 2.45
374 375 6.936279 AGGAAGAAAGAACGACTTGATCATA 58.064 36.000 0.00 0.00 38.98 2.15
375 376 7.560368 AGGAAGAAAGAACGACTTGATCATAT 58.440 34.615 0.00 0.00 38.98 1.78
376 377 8.043710 AGGAAGAAAGAACGACTTGATCATATT 58.956 33.333 0.00 0.00 38.98 1.28
377 378 8.669243 GGAAGAAAGAACGACTTGATCATATTT 58.331 33.333 0.00 0.00 38.98 1.40
378 379 9.695884 GAAGAAAGAACGACTTGATCATATTTC 57.304 33.333 0.00 0.00 38.98 2.17
379 380 8.202745 AGAAAGAACGACTTGATCATATTTCC 57.797 34.615 0.00 0.00 38.98 3.13
380 381 6.927294 AAGAACGACTTGATCATATTTCCC 57.073 37.500 0.00 0.00 37.45 3.97
381 382 6.240549 AGAACGACTTGATCATATTTCCCT 57.759 37.500 0.00 0.00 0.00 4.20
382 383 6.051717 AGAACGACTTGATCATATTTCCCTG 58.948 40.000 0.00 0.00 0.00 4.45
383 384 5.359194 ACGACTTGATCATATTTCCCTGT 57.641 39.130 0.00 0.00 0.00 4.00
384 385 5.360591 ACGACTTGATCATATTTCCCTGTC 58.639 41.667 0.00 0.00 0.00 3.51
385 386 4.752101 CGACTTGATCATATTTCCCTGTCC 59.248 45.833 0.00 0.00 0.00 4.02
386 387 5.053978 ACTTGATCATATTTCCCTGTCCC 57.946 43.478 0.00 0.00 0.00 4.46
387 388 3.769739 TGATCATATTTCCCTGTCCCG 57.230 47.619 0.00 0.00 0.00 5.14
388 389 2.371841 TGATCATATTTCCCTGTCCCGG 59.628 50.000 0.00 0.00 0.00 5.73
389 390 0.472471 TCATATTTCCCTGTCCCGGC 59.528 55.000 0.00 0.00 0.00 6.13
390 391 0.474184 CATATTTCCCTGTCCCGGCT 59.526 55.000 0.00 0.00 0.00 5.52
391 392 1.697432 CATATTTCCCTGTCCCGGCTA 59.303 52.381 0.00 0.00 0.00 3.93
392 393 1.882308 TATTTCCCTGTCCCGGCTAA 58.118 50.000 0.00 0.00 0.00 3.09
393 394 0.996583 ATTTCCCTGTCCCGGCTAAA 59.003 50.000 0.00 0.00 0.00 1.85
394 395 0.037160 TTTCCCTGTCCCGGCTAAAC 59.963 55.000 0.00 0.00 0.00 2.01
395 396 0.838987 TTCCCTGTCCCGGCTAAACT 60.839 55.000 0.00 0.00 0.00 2.66
396 397 0.041535 TCCCTGTCCCGGCTAAACTA 59.958 55.000 0.00 0.00 0.00 2.24
397 398 0.464452 CCCTGTCCCGGCTAAACTAG 59.536 60.000 0.00 0.00 0.00 2.57
411 412 6.796705 GCTAAACTAGCCTGTTCTGTTAAA 57.203 37.500 0.00 0.00 45.95 1.52
412 413 6.600350 GCTAAACTAGCCTGTTCTGTTAAAC 58.400 40.000 0.00 0.00 45.95 2.01
413 414 5.668558 AAACTAGCCTGTTCTGTTAAACG 57.331 39.130 0.00 0.00 31.58 3.60
414 415 3.064931 ACTAGCCTGTTCTGTTAAACGC 58.935 45.455 0.00 0.00 31.58 4.84
415 416 1.961793 AGCCTGTTCTGTTAAACGCA 58.038 45.000 0.00 0.00 31.58 5.24
416 417 2.504367 AGCCTGTTCTGTTAAACGCAT 58.496 42.857 0.00 0.00 31.58 4.73
417 418 3.670625 AGCCTGTTCTGTTAAACGCATA 58.329 40.909 0.00 0.00 31.58 3.14
418 419 3.435671 AGCCTGTTCTGTTAAACGCATAC 59.564 43.478 0.00 0.00 31.58 2.39
419 420 3.187637 GCCTGTTCTGTTAAACGCATACA 59.812 43.478 0.00 0.00 31.58 2.29
420 421 4.708601 CCTGTTCTGTTAAACGCATACAC 58.291 43.478 0.00 0.00 31.58 2.90
421 422 4.451096 CCTGTTCTGTTAAACGCATACACT 59.549 41.667 0.00 0.00 31.58 3.55
422 423 5.389516 CCTGTTCTGTTAAACGCATACACTC 60.390 44.000 0.00 0.00 31.58 3.51
423 424 5.051153 TGTTCTGTTAAACGCATACACTCA 58.949 37.500 0.00 0.00 31.58 3.41
424 425 5.699001 TGTTCTGTTAAACGCATACACTCAT 59.301 36.000 0.00 0.00 31.58 2.90
425 426 6.203915 TGTTCTGTTAAACGCATACACTCATT 59.796 34.615 0.00 0.00 31.58 2.57
426 427 6.403333 TCTGTTAAACGCATACACTCATTC 57.597 37.500 0.00 0.00 0.00 2.67
427 428 5.350365 TCTGTTAAACGCATACACTCATTCC 59.650 40.000 0.00 0.00 0.00 3.01
428 429 5.242434 TGTTAAACGCATACACTCATTCCT 58.758 37.500 0.00 0.00 0.00 3.36
429 430 6.399743 TGTTAAACGCATACACTCATTCCTA 58.600 36.000 0.00 0.00 0.00 2.94
430 431 7.045416 TGTTAAACGCATACACTCATTCCTAT 58.955 34.615 0.00 0.00 0.00 2.57
431 432 8.198778 TGTTAAACGCATACACTCATTCCTATA 58.801 33.333 0.00 0.00 0.00 1.31
432 433 9.037737 GTTAAACGCATACACTCATTCCTATAA 57.962 33.333 0.00 0.00 0.00 0.98
433 434 9.602568 TTAAACGCATACACTCATTCCTATAAA 57.397 29.630 0.00 0.00 0.00 1.40
434 435 8.677148 AAACGCATACACTCATTCCTATAAAT 57.323 30.769 0.00 0.00 0.00 1.40
435 436 7.658179 ACGCATACACTCATTCCTATAAATG 57.342 36.000 0.00 0.00 37.87 2.32
436 437 7.217200 ACGCATACACTCATTCCTATAAATGT 58.783 34.615 0.00 0.00 37.77 2.71
437 438 8.364894 ACGCATACACTCATTCCTATAAATGTA 58.635 33.333 0.00 0.00 37.77 2.29
438 439 9.371136 CGCATACACTCATTCCTATAAATGTAT 57.629 33.333 0.00 0.00 37.77 2.29
449 450 8.951787 TTCCTATAAATGTATGTACACACACC 57.048 34.615 9.58 0.00 39.30 4.16
450 451 8.313944 TCCTATAAATGTATGTACACACACCT 57.686 34.615 9.58 2.14 39.30 4.00
451 452 8.764558 TCCTATAAATGTATGTACACACACCTT 58.235 33.333 9.58 8.70 39.30 3.50
457 458 9.515226 AAATGTATGTACACACACCTTATTTCT 57.485 29.630 9.58 0.00 39.30 2.52
460 461 9.594478 TGTATGTACACACACCTTATTTCTATG 57.406 33.333 2.02 0.00 37.54 2.23
461 462 9.811995 GTATGTACACACACCTTATTTCTATGA 57.188 33.333 0.00 0.00 37.54 2.15
462 463 8.948631 ATGTACACACACCTTATTTCTATGAG 57.051 34.615 0.00 0.00 37.54 2.90
463 464 7.903145 TGTACACACACCTTATTTCTATGAGT 58.097 34.615 0.00 0.00 0.00 3.41
464 465 7.817478 TGTACACACACCTTATTTCTATGAGTG 59.183 37.037 0.00 0.00 37.72 3.51
465 466 5.643777 ACACACACCTTATTTCTATGAGTGC 59.356 40.000 0.00 0.00 35.93 4.40
466 467 5.065218 CACACACCTTATTTCTATGAGTGCC 59.935 44.000 0.00 0.00 0.00 5.01
467 468 5.045578 ACACACCTTATTTCTATGAGTGCCT 60.046 40.000 0.00 0.00 0.00 4.75
468 469 5.525378 CACACCTTATTTCTATGAGTGCCTC 59.475 44.000 0.00 0.00 0.00 4.70
469 470 5.059833 CACCTTATTTCTATGAGTGCCTCC 58.940 45.833 0.50 0.00 0.00 4.30
470 471 4.721776 ACCTTATTTCTATGAGTGCCTCCA 59.278 41.667 0.50 0.00 0.00 3.86
471 472 5.191722 ACCTTATTTCTATGAGTGCCTCCAA 59.808 40.000 0.50 0.00 0.00 3.53
472 473 5.762218 CCTTATTTCTATGAGTGCCTCCAAG 59.238 44.000 0.50 0.00 0.00 3.61
473 474 6.408548 CCTTATTTCTATGAGTGCCTCCAAGA 60.409 42.308 0.50 1.26 0.00 3.02
474 475 5.643421 ATTTCTATGAGTGCCTCCAAGAT 57.357 39.130 0.50 0.00 0.00 2.40
475 476 6.753913 ATTTCTATGAGTGCCTCCAAGATA 57.246 37.500 0.50 0.52 0.00 1.98
476 477 6.753913 TTTCTATGAGTGCCTCCAAGATAT 57.246 37.500 0.50 0.00 0.00 1.63
477 478 5.991933 TCTATGAGTGCCTCCAAGATATC 57.008 43.478 0.00 0.00 0.00 1.63
478 479 3.674528 ATGAGTGCCTCCAAGATATCG 57.325 47.619 0.00 0.00 0.00 2.92
479 480 2.666317 TGAGTGCCTCCAAGATATCGA 58.334 47.619 0.00 0.00 0.00 3.59
480 481 2.625314 TGAGTGCCTCCAAGATATCGAG 59.375 50.000 0.00 0.00 0.00 4.04
481 482 1.967066 AGTGCCTCCAAGATATCGAGG 59.033 52.381 16.71 16.71 45.12 4.63
482 483 1.964223 GTGCCTCCAAGATATCGAGGA 59.036 52.381 22.43 19.04 45.15 3.71
483 484 1.964223 TGCCTCCAAGATATCGAGGAC 59.036 52.381 22.43 15.71 45.15 3.85
484 485 1.964223 GCCTCCAAGATATCGAGGACA 59.036 52.381 22.43 4.28 45.15 4.02
485 486 2.288518 GCCTCCAAGATATCGAGGACAC 60.289 54.545 22.43 11.49 45.15 3.67
486 487 2.959030 CCTCCAAGATATCGAGGACACA 59.041 50.000 16.24 0.00 45.15 3.72
487 488 3.384789 CCTCCAAGATATCGAGGACACAA 59.615 47.826 16.24 0.00 45.15 3.33
488 489 4.363999 CTCCAAGATATCGAGGACACAAC 58.636 47.826 13.24 0.00 0.00 3.32
489 490 3.767131 TCCAAGATATCGAGGACACAACA 59.233 43.478 13.24 0.00 0.00 3.33
490 491 4.405680 TCCAAGATATCGAGGACACAACAT 59.594 41.667 13.24 0.00 0.00 2.71
491 492 4.747108 CCAAGATATCGAGGACACAACATC 59.253 45.833 10.04 0.00 0.00 3.06
492 493 5.452496 CCAAGATATCGAGGACACAACATCT 60.452 44.000 10.04 0.00 0.00 2.90
493 494 5.860941 AGATATCGAGGACACAACATCTT 57.139 39.130 0.00 0.00 0.00 2.40
494 495 6.961360 AGATATCGAGGACACAACATCTTA 57.039 37.500 0.00 0.00 0.00 2.10
495 496 7.348080 AGATATCGAGGACACAACATCTTAA 57.652 36.000 0.00 0.00 0.00 1.85
496 497 7.782049 AGATATCGAGGACACAACATCTTAAA 58.218 34.615 0.00 0.00 0.00 1.52
497 498 8.258007 AGATATCGAGGACACAACATCTTAAAA 58.742 33.333 0.00 0.00 0.00 1.52
498 499 8.964476 ATATCGAGGACACAACATCTTAAAAT 57.036 30.769 0.00 0.00 0.00 1.82
499 500 7.687941 ATCGAGGACACAACATCTTAAAATT 57.312 32.000 0.00 0.00 0.00 1.82
500 501 6.898041 TCGAGGACACAACATCTTAAAATTG 58.102 36.000 0.00 0.00 0.00 2.32
501 502 6.708502 TCGAGGACACAACATCTTAAAATTGA 59.291 34.615 0.00 0.00 0.00 2.57
502 503 7.227711 TCGAGGACACAACATCTTAAAATTGAA 59.772 33.333 0.00 0.00 0.00 2.69
503 504 7.535258 CGAGGACACAACATCTTAAAATTGAAG 59.465 37.037 0.00 0.00 0.00 3.02
504 505 8.463930 AGGACACAACATCTTAAAATTGAAGA 57.536 30.769 0.00 0.00 37.34 2.87
505 506 8.912988 AGGACACAACATCTTAAAATTGAAGAA 58.087 29.630 0.00 0.00 36.54 2.52
506 507 9.185192 GGACACAACATCTTAAAATTGAAGAAG 57.815 33.333 0.00 0.00 36.54 2.85
507 508 9.736023 GACACAACATCTTAAAATTGAAGAAGT 57.264 29.630 0.00 0.00 36.65 3.01
508 509 9.736023 ACACAACATCTTAAAATTGAAGAAGTC 57.264 29.630 1.86 0.00 34.64 3.01
509 510 9.734620 CACAACATCTTAAAATTGAAGAAGTCA 57.265 29.630 1.86 0.00 34.64 3.41
516 517 9.559732 TCTTAAAATTGAAGAAGTCATCACAGA 57.440 29.630 0.00 0.00 35.70 3.41
519 520 5.814764 ATTGAAGAAGTCATCACAGATGC 57.185 39.130 2.19 0.00 35.70 3.91
520 521 4.548451 TGAAGAAGTCATCACAGATGCT 57.452 40.909 2.19 1.12 0.00 3.79
521 522 4.903054 TGAAGAAGTCATCACAGATGCTT 58.097 39.130 12.89 12.89 0.00 3.91
522 523 4.934001 TGAAGAAGTCATCACAGATGCTTC 59.066 41.667 22.29 22.29 34.98 3.86
523 524 4.548451 AGAAGTCATCACAGATGCTTCA 57.452 40.909 26.59 5.14 36.05 3.02
524 525 5.100344 AGAAGTCATCACAGATGCTTCAT 57.900 39.130 26.59 17.49 36.05 2.57
525 526 6.231258 AGAAGTCATCACAGATGCTTCATA 57.769 37.500 26.59 4.35 36.05 2.15
526 527 6.647229 AGAAGTCATCACAGATGCTTCATAA 58.353 36.000 26.59 3.83 36.05 1.90
527 528 7.281098 AGAAGTCATCACAGATGCTTCATAAT 58.719 34.615 26.59 14.94 36.05 1.28
528 529 7.441760 AGAAGTCATCACAGATGCTTCATAATC 59.558 37.037 26.59 13.16 36.05 1.75
529 530 6.589135 AGTCATCACAGATGCTTCATAATCA 58.411 36.000 2.07 0.00 0.00 2.57
530 531 6.706716 AGTCATCACAGATGCTTCATAATCAG 59.293 38.462 2.07 0.00 0.00 2.90
531 532 6.704937 GTCATCACAGATGCTTCATAATCAGA 59.295 38.462 2.07 0.00 0.00 3.27
532 533 6.704937 TCATCACAGATGCTTCATAATCAGAC 59.295 38.462 2.07 0.00 0.00 3.51
533 534 5.045872 TCACAGATGCTTCATAATCAGACG 58.954 41.667 2.07 0.00 0.00 4.18
534 535 4.210746 CACAGATGCTTCATAATCAGACGG 59.789 45.833 2.07 0.00 0.00 4.79
535 536 3.744942 CAGATGCTTCATAATCAGACGGG 59.255 47.826 2.07 0.00 0.00 5.28
536 537 3.643320 AGATGCTTCATAATCAGACGGGA 59.357 43.478 2.07 0.00 0.00 5.14
537 538 3.179443 TGCTTCATAATCAGACGGGAC 57.821 47.619 0.00 0.00 0.00 4.46
590 591 3.694889 AAAAATGCGAGCGCCTTAC 57.305 47.368 12.70 0.00 41.09 2.34
591 592 0.878416 AAAAATGCGAGCGCCTTACA 59.122 45.000 12.70 0.00 41.09 2.41
592 593 0.168128 AAAATGCGAGCGCCTTACAC 59.832 50.000 12.70 0.00 41.09 2.90
593 594 0.673644 AAATGCGAGCGCCTTACACT 60.674 50.000 12.70 0.00 41.09 3.55
594 595 1.361668 AATGCGAGCGCCTTACACTG 61.362 55.000 12.70 0.00 41.09 3.66
595 596 3.188786 GCGAGCGCCTTACACTGG 61.189 66.667 2.29 0.00 34.56 4.00
596 597 3.188786 CGAGCGCCTTACACTGGC 61.189 66.667 2.29 0.00 46.42 4.85
613 614 2.923035 CCGGGCCGGTAGATGGAT 60.923 66.667 36.52 0.00 42.73 3.41
652 653 4.748083 GCGTCGCCGTTTTCGTCG 62.748 66.667 5.75 0.00 46.01 5.12
653 654 4.748083 CGTCGCCGTTTTCGTCGC 62.748 66.667 0.00 0.00 44.30 5.19
654 655 3.694394 GTCGCCGTTTTCGTCGCA 61.694 61.111 0.00 0.00 44.30 5.10
655 656 2.960659 TCGCCGTTTTCGTCGCAA 60.961 55.556 0.00 0.00 44.30 4.85
670 671 4.499023 CAAACGCGCCGTCGATGG 62.499 66.667 19.87 19.87 39.99 3.51
671 672 4.728102 AAACGCGCCGTCGATGGA 62.728 61.111 28.06 0.00 39.99 3.41
739 740 3.125520 TTGACCCCTTCAACCTTGC 57.874 52.632 0.00 0.00 39.45 4.01
742 743 0.178990 GACCCCTTCAACCTTGCACT 60.179 55.000 0.00 0.00 0.00 4.40
772 1462 3.434319 CGGTGACCCTGCATGCAC 61.434 66.667 18.46 7.77 0.00 4.57
779 1481 2.267351 CCCTGCATGCACGAACCAA 61.267 57.895 18.46 0.00 0.00 3.67
796 1498 1.904865 AAGACCAGCCGTACGTCCA 60.905 57.895 15.21 0.00 0.00 4.02
797 1499 2.126189 GACCAGCCGTACGTCCAC 60.126 66.667 15.21 0.54 0.00 4.02
798 1500 2.599578 ACCAGCCGTACGTCCACT 60.600 61.111 15.21 3.04 0.00 4.00
799 1501 2.181021 CCAGCCGTACGTCCACTC 59.819 66.667 15.21 0.00 0.00 3.51
802 1504 2.045131 AGCCGTACGTCCACTCTCC 61.045 63.158 15.21 0.00 0.00 3.71
811 1513 2.363018 CCACTCTCCTCCCTGCGA 60.363 66.667 0.00 0.00 0.00 5.10
1128 1831 2.233922 CAGAGGTACCAACGATCCAACT 59.766 50.000 15.94 0.00 0.00 3.16
1155 1858 3.119708 GCCTTGGATGAATTATCGGCATC 60.120 47.826 0.00 0.00 38.76 3.91
1158 1861 1.061131 GGATGAATTATCGGCATCGCG 59.939 52.381 0.00 0.00 39.36 5.87
1169 1872 1.062525 GCATCGCGTTGGTTGATCC 59.937 57.895 18.16 0.00 0.00 3.36
1170 1873 1.348250 CATCGCGTTGGTTGATCCG 59.652 57.895 5.77 0.00 39.52 4.18
1176 1886 0.947180 CGTTGGTTGATCCGTCCGTT 60.947 55.000 0.00 0.00 39.52 4.44
1202 1912 1.669265 GGGTTCTACATAAACTGCGGC 59.331 52.381 0.00 0.00 0.00 6.53
1827 2541 1.146263 CCATGGAGACCCCTAACGC 59.854 63.158 5.56 0.00 35.38 4.84
2193 2907 2.674177 CGTCATGGTCTACTCCAACACC 60.674 54.545 0.00 0.00 41.09 4.16
2355 3069 6.825721 ACTCAATTTCAGACCCTTCATATCAC 59.174 38.462 0.00 0.00 0.00 3.06
2361 3075 2.146342 GACCCTTCATATCACATGCCG 58.854 52.381 0.00 0.00 0.00 5.69
2374 3088 4.149598 TCACATGCCGATATGTAGGTACT 58.850 43.478 0.00 0.00 39.17 2.73
2380 3094 4.891168 TGCCGATATGTAGGTACTTTCAGA 59.109 41.667 0.00 0.00 41.75 3.27
2400 3114 9.942850 TTTCAGACTGTAAATTGTCATCATCTA 57.057 29.630 1.59 0.00 35.81 1.98
2401 3115 8.932945 TCAGACTGTAAATTGTCATCATCTAC 57.067 34.615 1.59 0.00 35.81 2.59
2436 3158 4.001652 TGTGTTTCACCTTACGTTTGTGA 58.998 39.130 9.55 9.55 37.24 3.58
2533 3259 3.901797 CTTGAAGAACCCGCCGCCT 62.902 63.158 0.00 0.00 0.00 5.52
2611 3337 4.338539 GACGACTCACCCGTGCGT 62.339 66.667 0.00 0.00 40.67 5.24
2615 3341 4.295119 ACTCACCCGTGCGTGTCC 62.295 66.667 0.00 0.00 35.18 4.02
2658 3395 6.939163 AGATTATATGAACTCATCCAGTTGCC 59.061 38.462 0.00 0.00 46.10 4.52
2663 3400 2.592102 ACTCATCCAGTTGCCAACAT 57.408 45.000 10.69 0.00 26.56 2.71
2664 3401 2.165167 ACTCATCCAGTTGCCAACATG 58.835 47.619 10.69 5.27 26.56 3.21
2688 3425 7.250569 TGGCTCAAACTGAAATAATTTCGATC 58.749 34.615 0.00 0.00 42.55 3.69
2739 3477 9.862371 ACAGTATTATGAAACTTAGAGTCAGTG 57.138 33.333 0.00 0.00 0.00 3.66
2746 3484 6.640518 TGAAACTTAGAGTCAGTGAACTGTT 58.359 36.000 10.14 0.00 44.12 3.16
2763 3501 3.316308 ACTGTTCTGACCATTTCTGCAAC 59.684 43.478 0.00 0.00 0.00 4.17
2826 3564 1.657822 GTCTTTCAGGATCGCTTCCC 58.342 55.000 1.06 0.00 46.81 3.97
2934 3677 9.256477 CAAAATAAGAAAAACACCCCTTCTAAC 57.744 33.333 0.00 0.00 0.00 2.34
2947 3690 3.432890 CCCTTCTAACCTTGCCTCTGATC 60.433 52.174 0.00 0.00 0.00 2.92
3014 3757 2.005451 CATACCTGACTTCAGCAGCAC 58.995 52.381 0.26 0.00 42.47 4.40
3039 3782 2.742589 GACCTTAACTGCACTGTAAGCC 59.257 50.000 0.00 0.00 37.60 4.35
3202 3946 2.263945 GTAAGCGCTCAGTTTCTCCTC 58.736 52.381 12.06 0.00 0.00 3.71
3206 3950 0.891373 CGCTCAGTTTCTCCTCCTCA 59.109 55.000 0.00 0.00 0.00 3.86
3209 3953 2.301583 GCTCAGTTTCTCCTCCTCAAGT 59.698 50.000 0.00 0.00 0.00 3.16
3256 4389 4.460034 TGATACATTTGCTCTGCACAATGT 59.540 37.500 22.68 22.68 44.10 2.71
3343 4476 2.837498 TGTCATGAGGTATGCCGATTG 58.163 47.619 0.00 0.00 40.50 2.67
3344 4477 2.433970 TGTCATGAGGTATGCCGATTGA 59.566 45.455 0.00 0.00 40.50 2.57
3345 4478 3.071457 TGTCATGAGGTATGCCGATTGAT 59.929 43.478 0.00 0.00 40.50 2.57
3371 4504 2.159338 AGTAACGAATCGCTCCGCTTAA 60.159 45.455 1.15 0.00 0.00 1.85
3381 4514 2.159747 CGCTCCGCTTAAGTTGTTTACC 60.160 50.000 4.02 0.00 0.00 2.85
3386 4519 6.453926 TCCGCTTAAGTTGTTTACCTTTTT 57.546 33.333 4.02 0.00 0.00 1.94
3388 4521 5.688621 CCGCTTAAGTTGTTTACCTTTTTCC 59.311 40.000 4.02 0.00 0.00 3.13
3391 4524 7.485810 GCTTAAGTTGTTTACCTTTTTCCTCA 58.514 34.615 4.02 0.00 0.00 3.86
3392 4525 8.141909 GCTTAAGTTGTTTACCTTTTTCCTCAT 58.858 33.333 4.02 0.00 0.00 2.90
3393 4526 9.463443 CTTAAGTTGTTTACCTTTTTCCTCATG 57.537 33.333 0.00 0.00 0.00 3.07
3438 4571 4.338795 AACTTCTGATAGGACTGAGGGA 57.661 45.455 0.00 0.00 0.00 4.20
3490 4623 7.642669 AGGAAATATCGTGATGCTAATTTGTG 58.357 34.615 0.00 0.00 0.00 3.33
3496 4629 6.110543 TCGTGATGCTAATTTGTGAATCTG 57.889 37.500 0.00 0.00 0.00 2.90
3502 4635 6.198650 TGCTAATTTGTGAATCTGATGGTG 57.801 37.500 0.00 0.00 0.00 4.17
3553 4686 2.909662 AGAAGGGAGAAGAGTGAAAGGG 59.090 50.000 0.00 0.00 0.00 3.95
3664 4797 3.307762 GCCATTGTGTCCTTCTCCTAGTT 60.308 47.826 0.00 0.00 0.00 2.24
3665 4798 4.807643 GCCATTGTGTCCTTCTCCTAGTTT 60.808 45.833 0.00 0.00 0.00 2.66
3666 4799 5.570844 GCCATTGTGTCCTTCTCCTAGTTTA 60.571 44.000 0.00 0.00 0.00 2.01
3667 4800 6.109359 CCATTGTGTCCTTCTCCTAGTTTAG 58.891 44.000 0.00 0.00 0.00 1.85
3725 4963 6.772716 GCCAAAGAATCATTTCCTGGTCTATA 59.227 38.462 0.00 0.00 37.53 1.31
3941 5344 1.073763 TGCCATCTTGTAAGCCACTGT 59.926 47.619 0.00 0.00 0.00 3.55
3968 5371 5.406649 ACATACCAACAAAATGCATAACCG 58.593 37.500 0.00 0.00 0.00 4.44
3969 5372 2.682836 ACCAACAAAATGCATAACCGC 58.317 42.857 0.00 0.00 0.00 5.68
4001 5404 6.533367 GGCGATCCAGATAGATAAAGCTTAAG 59.467 42.308 0.00 0.00 0.00 1.85
4009 5412 8.097038 CAGATAGATAAAGCTTAAGCCATACCA 58.903 37.037 23.71 4.84 43.38 3.25
4010 5413 8.317679 AGATAGATAAAGCTTAAGCCATACCAG 58.682 37.037 23.71 0.00 43.38 4.00
4027 5430 4.942363 ACCAGACTCCTAACTAGTACCA 57.058 45.455 0.00 0.00 0.00 3.25
4136 5541 5.066375 CGGATGATATGCACCTGAAAAGAAA 59.934 40.000 0.00 0.00 0.00 2.52
4181 5586 7.338196 TCAAAAGTAAACACCATCTTGAGTTCA 59.662 33.333 0.00 0.00 0.00 3.18
4184 5589 6.119536 AGTAAACACCATCTTGAGTTCACAA 58.880 36.000 0.00 0.00 0.00 3.33
4189 5594 2.096069 CCATCTTGAGTTCACAACTGCG 60.096 50.000 0.00 0.00 43.03 5.18
4356 5761 3.889520 AGGTATTTGGACTCGAACTCC 57.110 47.619 2.34 2.34 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.404707 TCGTTACGGCGGCGTTTG 61.405 61.111 41.52 28.82 0.00 2.93
3 4 4.644230 TGTCGTTACGGCGGCGTT 62.644 61.111 41.52 24.80 39.62 4.84
7 8 2.879462 GCTCTGTCGTTACGGCGG 60.879 66.667 12.36 12.36 39.39 6.13
8 9 2.879462 GGCTCTGTCGTTACGGCG 60.879 66.667 4.80 4.80 32.50 6.46
10 11 2.202570 CGGGCTCTGTCGTTACGG 60.203 66.667 4.53 0.00 0.00 4.02
11 12 1.226323 CTCGGGCTCTGTCGTTACG 60.226 63.158 0.00 0.00 0.00 3.18
12 13 0.524862 TTCTCGGGCTCTGTCGTTAC 59.475 55.000 0.00 0.00 0.00 2.50
13 14 0.524862 GTTCTCGGGCTCTGTCGTTA 59.475 55.000 0.00 0.00 0.00 3.18
14 15 1.289380 GTTCTCGGGCTCTGTCGTT 59.711 57.895 0.00 0.00 0.00 3.85
15 16 1.901948 TGTTCTCGGGCTCTGTCGT 60.902 57.895 0.00 0.00 0.00 4.34
16 17 1.444553 GTGTTCTCGGGCTCTGTCG 60.445 63.158 0.00 0.00 0.00 4.35
17 18 0.247736 ATGTGTTCTCGGGCTCTGTC 59.752 55.000 0.00 0.00 0.00 3.51
18 19 0.036952 CATGTGTTCTCGGGCTCTGT 60.037 55.000 0.00 0.00 0.00 3.41
19 20 0.036952 ACATGTGTTCTCGGGCTCTG 60.037 55.000 0.00 0.00 0.00 3.35
20 21 0.247736 GACATGTGTTCTCGGGCTCT 59.752 55.000 1.15 0.00 0.00 4.09
21 22 0.741221 GGACATGTGTTCTCGGGCTC 60.741 60.000 1.15 0.00 0.00 4.70
22 23 1.296715 GGACATGTGTTCTCGGGCT 59.703 57.895 1.15 0.00 0.00 5.19
23 24 1.003839 TGGACATGTGTTCTCGGGC 60.004 57.895 1.15 0.00 0.00 6.13
24 25 0.673644 GGTGGACATGTGTTCTCGGG 60.674 60.000 1.15 0.00 0.00 5.14
25 26 0.034756 TGGTGGACATGTGTTCTCGG 59.965 55.000 1.15 0.00 0.00 4.63
26 27 1.148310 GTGGTGGACATGTGTTCTCG 58.852 55.000 1.15 0.00 0.00 4.04
27 28 1.148310 CGTGGTGGACATGTGTTCTC 58.852 55.000 1.15 0.00 0.00 2.87
28 29 0.756294 TCGTGGTGGACATGTGTTCT 59.244 50.000 1.15 0.00 37.38 3.01
29 30 1.148310 CTCGTGGTGGACATGTGTTC 58.852 55.000 1.15 0.00 37.38 3.18
30 31 0.250295 CCTCGTGGTGGACATGTGTT 60.250 55.000 1.15 0.00 37.38 3.32
31 32 1.118965 TCCTCGTGGTGGACATGTGT 61.119 55.000 1.15 0.00 37.38 3.72
32 33 0.250234 ATCCTCGTGGTGGACATGTG 59.750 55.000 1.15 0.00 36.30 3.21
33 34 1.860641 TATCCTCGTGGTGGACATGT 58.139 50.000 0.00 0.00 36.30 3.21
34 35 2.608016 CGATATCCTCGTGGTGGACATG 60.608 54.545 2.99 0.00 42.56 3.21
35 36 1.613925 CGATATCCTCGTGGTGGACAT 59.386 52.381 2.99 0.00 42.56 3.06
36 37 1.029681 CGATATCCTCGTGGTGGACA 58.970 55.000 2.99 0.00 42.56 4.02
37 38 3.867723 CGATATCCTCGTGGTGGAC 57.132 57.895 2.99 0.00 42.56 4.02
46 47 2.126424 GGCGGCGTCGATATCCTC 60.126 66.667 16.53 0.00 39.00 3.71
47 48 4.039357 CGGCGGCGTCGATATCCT 62.039 66.667 32.11 0.00 39.00 3.24
49 50 4.994201 TGCGGCGGCGTCGATATC 62.994 66.667 39.40 20.34 44.10 1.63
61 62 3.064324 AAGCAAGGATGGTGCGGC 61.064 61.111 0.00 0.00 46.86 6.53
62 63 1.243342 TTCAAGCAAGGATGGTGCGG 61.243 55.000 0.00 0.00 46.86 5.69
63 64 0.109597 GTTCAAGCAAGGATGGTGCG 60.110 55.000 0.00 0.00 46.86 5.34
64 65 0.961019 TGTTCAAGCAAGGATGGTGC 59.039 50.000 0.00 0.00 42.55 5.01
65 66 2.227388 GTCTGTTCAAGCAAGGATGGTG 59.773 50.000 0.00 0.00 37.35 4.17
66 67 2.107204 AGTCTGTTCAAGCAAGGATGGT 59.893 45.455 0.00 0.00 39.43 3.55
67 68 2.486982 CAGTCTGTTCAAGCAAGGATGG 59.513 50.000 0.00 0.00 0.00 3.51
68 69 2.486982 CCAGTCTGTTCAAGCAAGGATG 59.513 50.000 0.00 0.00 0.00 3.51
69 70 2.373169 TCCAGTCTGTTCAAGCAAGGAT 59.627 45.455 0.00 0.00 0.00 3.24
70 71 1.768275 TCCAGTCTGTTCAAGCAAGGA 59.232 47.619 0.00 0.00 0.00 3.36
71 72 2.260844 TCCAGTCTGTTCAAGCAAGG 57.739 50.000 0.00 0.00 0.00 3.61
72 73 3.190118 GGAATCCAGTCTGTTCAAGCAAG 59.810 47.826 0.00 0.00 0.00 4.01
73 74 3.149196 GGAATCCAGTCTGTTCAAGCAA 58.851 45.455 0.00 0.00 0.00 3.91
74 75 2.106338 TGGAATCCAGTCTGTTCAAGCA 59.894 45.455 0.00 0.00 0.00 3.91
75 76 2.783135 TGGAATCCAGTCTGTTCAAGC 58.217 47.619 0.00 0.00 0.00 4.01
76 77 5.105997 GGATTTGGAATCCAGTCTGTTCAAG 60.106 44.000 13.44 0.00 38.09 3.02
77 78 4.766891 GGATTTGGAATCCAGTCTGTTCAA 59.233 41.667 13.44 0.00 38.09 2.69
78 79 4.202556 TGGATTTGGAATCCAGTCTGTTCA 60.203 41.667 16.32 0.00 42.81 3.18
79 80 4.335416 TGGATTTGGAATCCAGTCTGTTC 58.665 43.478 16.32 0.00 42.81 3.18
80 81 4.387026 TGGATTTGGAATCCAGTCTGTT 57.613 40.909 16.32 0.00 42.81 3.16
88 89 3.132824 GGTTGGTGATGGATTTGGAATCC 59.867 47.826 11.81 11.81 38.66 3.01
89 90 3.768757 TGGTTGGTGATGGATTTGGAATC 59.231 43.478 0.00 0.00 0.00 2.52
90 91 3.788933 TGGTTGGTGATGGATTTGGAAT 58.211 40.909 0.00 0.00 0.00 3.01
91 92 3.251016 TGGTTGGTGATGGATTTGGAA 57.749 42.857 0.00 0.00 0.00 3.53
92 93 2.988636 TGGTTGGTGATGGATTTGGA 57.011 45.000 0.00 0.00 0.00 3.53
93 94 3.638160 CCTATGGTTGGTGATGGATTTGG 59.362 47.826 0.00 0.00 0.00 3.28
94 95 4.339247 GTCCTATGGTTGGTGATGGATTTG 59.661 45.833 0.00 0.00 0.00 2.32
95 96 4.230502 AGTCCTATGGTTGGTGATGGATTT 59.769 41.667 0.00 0.00 0.00 2.17
96 97 3.788142 AGTCCTATGGTTGGTGATGGATT 59.212 43.478 0.00 0.00 0.00 3.01
97 98 3.137176 CAGTCCTATGGTTGGTGATGGAT 59.863 47.826 0.00 0.00 0.00 3.41
98 99 2.505407 CAGTCCTATGGTTGGTGATGGA 59.495 50.000 0.00 0.00 0.00 3.41
99 100 2.505407 TCAGTCCTATGGTTGGTGATGG 59.495 50.000 0.00 0.00 0.00 3.51
100 101 3.912496 TCAGTCCTATGGTTGGTGATG 57.088 47.619 0.00 0.00 0.00 3.07
101 102 4.040047 TGATCAGTCCTATGGTTGGTGAT 58.960 43.478 0.00 0.00 0.00 3.06
102 103 3.197766 GTGATCAGTCCTATGGTTGGTGA 59.802 47.826 0.00 0.00 0.00 4.02
103 104 3.535561 GTGATCAGTCCTATGGTTGGTG 58.464 50.000 0.00 0.00 0.00 4.17
104 105 2.505819 GGTGATCAGTCCTATGGTTGGT 59.494 50.000 0.00 0.00 0.00 3.67
105 106 2.774234 AGGTGATCAGTCCTATGGTTGG 59.226 50.000 3.05 0.00 31.66 3.77
106 107 3.491619 CGAGGTGATCAGTCCTATGGTTG 60.492 52.174 4.90 0.00 33.83 3.77
107 108 2.695666 CGAGGTGATCAGTCCTATGGTT 59.304 50.000 4.90 0.00 33.83 3.67
108 109 2.311463 CGAGGTGATCAGTCCTATGGT 58.689 52.381 4.90 0.00 33.83 3.55
109 110 2.294791 GACGAGGTGATCAGTCCTATGG 59.705 54.545 4.90 1.57 33.83 2.74
110 111 2.031595 CGACGAGGTGATCAGTCCTATG 60.032 54.545 4.90 4.21 33.83 2.23
111 112 2.222886 CGACGAGGTGATCAGTCCTAT 58.777 52.381 4.90 0.00 33.83 2.57
112 113 1.664873 CGACGAGGTGATCAGTCCTA 58.335 55.000 4.90 0.00 33.83 2.94
113 114 1.032657 CCGACGAGGTGATCAGTCCT 61.033 60.000 4.58 4.58 36.70 3.85
114 115 1.030488 TCCGACGAGGTGATCAGTCC 61.030 60.000 0.00 0.00 41.99 3.85
115 116 0.378962 CTCCGACGAGGTGATCAGTC 59.621 60.000 0.00 0.00 41.99 3.51
116 117 0.322636 ACTCCGACGAGGTGATCAGT 60.323 55.000 0.00 0.00 40.77 3.41
117 118 1.600013 CTACTCCGACGAGGTGATCAG 59.400 57.143 0.00 0.00 40.77 2.90
118 119 1.664873 CTACTCCGACGAGGTGATCA 58.335 55.000 0.00 0.00 40.77 2.92
119 120 0.945813 CCTACTCCGACGAGGTGATC 59.054 60.000 0.00 0.00 40.77 2.92
120 121 0.545171 TCCTACTCCGACGAGGTGAT 59.455 55.000 0.00 0.05 40.77 3.06
121 122 0.545171 ATCCTACTCCGACGAGGTGA 59.455 55.000 0.00 0.00 40.77 4.02
122 123 0.945813 GATCCTACTCCGACGAGGTG 59.054 60.000 0.00 0.00 40.77 4.00
123 124 0.838608 AGATCCTACTCCGACGAGGT 59.161 55.000 0.00 0.00 40.77 3.85
124 125 1.202663 TCAGATCCTACTCCGACGAGG 60.203 57.143 0.00 0.00 40.77 4.63
125 126 2.139917 CTCAGATCCTACTCCGACGAG 58.860 57.143 0.00 0.00 42.32 4.18
126 127 1.202663 CCTCAGATCCTACTCCGACGA 60.203 57.143 0.00 0.00 0.00 4.20
127 128 1.202663 TCCTCAGATCCTACTCCGACG 60.203 57.143 0.00 0.00 0.00 5.12
128 129 2.105134 TCTCCTCAGATCCTACTCCGAC 59.895 54.545 0.00 0.00 0.00 4.79
129 130 2.105134 GTCTCCTCAGATCCTACTCCGA 59.895 54.545 0.00 0.00 0.00 4.55
130 131 2.105821 AGTCTCCTCAGATCCTACTCCG 59.894 54.545 0.00 0.00 0.00 4.63
131 132 3.876309 AGTCTCCTCAGATCCTACTCC 57.124 52.381 0.00 0.00 0.00 3.85
132 133 4.787551 TGAAGTCTCCTCAGATCCTACTC 58.212 47.826 0.00 0.00 0.00 2.59
133 134 4.871871 TGAAGTCTCCTCAGATCCTACT 57.128 45.455 0.00 0.00 0.00 2.57
134 135 5.596361 TGAATGAAGTCTCCTCAGATCCTAC 59.404 44.000 0.00 0.00 0.00 3.18
135 136 5.770919 TGAATGAAGTCTCCTCAGATCCTA 58.229 41.667 0.00 0.00 0.00 2.94
136 137 4.618635 TGAATGAAGTCTCCTCAGATCCT 58.381 43.478 0.00 0.00 0.00 3.24
137 138 4.740334 GCTGAATGAAGTCTCCTCAGATCC 60.740 50.000 1.68 0.00 34.58 3.36
138 139 4.370917 GCTGAATGAAGTCTCCTCAGATC 58.629 47.826 1.68 0.00 34.58 2.75
139 140 3.181477 CGCTGAATGAAGTCTCCTCAGAT 60.181 47.826 1.68 0.00 34.58 2.90
140 141 2.165234 CGCTGAATGAAGTCTCCTCAGA 59.835 50.000 1.68 0.00 34.58 3.27
141 142 2.538437 CGCTGAATGAAGTCTCCTCAG 58.462 52.381 0.00 0.00 35.25 3.35
142 143 1.404717 GCGCTGAATGAAGTCTCCTCA 60.405 52.381 0.00 0.00 0.00 3.86
143 144 1.134848 AGCGCTGAATGAAGTCTCCTC 60.135 52.381 10.39 0.00 0.00 3.71
144 145 0.901124 AGCGCTGAATGAAGTCTCCT 59.099 50.000 10.39 0.00 0.00 3.69
145 146 1.005340 CAGCGCTGAATGAAGTCTCC 58.995 55.000 33.66 0.00 0.00 3.71
146 147 1.658095 GACAGCGCTGAATGAAGTCTC 59.342 52.381 42.03 22.14 0.00 3.36
147 148 1.001293 TGACAGCGCTGAATGAAGTCT 59.999 47.619 42.03 17.91 0.00 3.24
148 149 1.432514 TGACAGCGCTGAATGAAGTC 58.567 50.000 42.03 26.55 0.00 3.01
149 150 2.005451 GATGACAGCGCTGAATGAAGT 58.995 47.619 42.03 19.53 0.00 3.01
150 151 1.005242 CGATGACAGCGCTGAATGAAG 60.005 52.381 42.03 23.21 0.00 3.02
151 152 1.001624 CGATGACAGCGCTGAATGAA 58.998 50.000 42.03 21.84 0.00 2.57
152 153 2.669419 CGATGACAGCGCTGAATGA 58.331 52.632 42.03 22.17 0.00 2.57
174 175 3.659089 ATCGTCTTGGGTTCGGCGG 62.659 63.158 7.21 0.00 0.00 6.13
175 176 2.125673 ATCGTCTTGGGTTCGGCG 60.126 61.111 0.00 0.00 0.00 6.46
176 177 0.672401 TTCATCGTCTTGGGTTCGGC 60.672 55.000 0.00 0.00 0.00 5.54
177 178 1.076332 GTTCATCGTCTTGGGTTCGG 58.924 55.000 0.00 0.00 0.00 4.30
178 179 1.790755 TGTTCATCGTCTTGGGTTCG 58.209 50.000 0.00 0.00 0.00 3.95
179 180 2.225727 GGTTGTTCATCGTCTTGGGTTC 59.774 50.000 0.00 0.00 0.00 3.62
180 181 2.158667 AGGTTGTTCATCGTCTTGGGTT 60.159 45.455 0.00 0.00 0.00 4.11
181 182 1.420138 AGGTTGTTCATCGTCTTGGGT 59.580 47.619 0.00 0.00 0.00 4.51
182 183 2.185004 AGGTTGTTCATCGTCTTGGG 57.815 50.000 0.00 0.00 0.00 4.12
183 184 5.682943 TTTTAGGTTGTTCATCGTCTTGG 57.317 39.130 0.00 0.00 0.00 3.61
184 185 6.725246 AGTTTTTAGGTTGTTCATCGTCTTG 58.275 36.000 0.00 0.00 0.00 3.02
185 186 6.937436 AGTTTTTAGGTTGTTCATCGTCTT 57.063 33.333 0.00 0.00 0.00 3.01
186 187 8.617290 ATTAGTTTTTAGGTTGTTCATCGTCT 57.383 30.769 0.00 0.00 0.00 4.18
187 188 8.718734 AGATTAGTTTTTAGGTTGTTCATCGTC 58.281 33.333 0.00 0.00 0.00 4.20
188 189 8.617290 AGATTAGTTTTTAGGTTGTTCATCGT 57.383 30.769 0.00 0.00 0.00 3.73
189 190 9.968743 GTAGATTAGTTTTTAGGTTGTTCATCG 57.031 33.333 0.00 0.00 0.00 3.84
195 196 9.636789 ACCAAAGTAGATTAGTTTTTAGGTTGT 57.363 29.630 0.00 0.00 26.87 3.32
209 210 9.668497 GTGGATAGTTTTAGACCAAAGTAGATT 57.332 33.333 0.00 0.00 32.32 2.40
210 211 7.980099 CGTGGATAGTTTTAGACCAAAGTAGAT 59.020 37.037 0.00 0.00 32.32 1.98
211 212 7.318141 CGTGGATAGTTTTAGACCAAAGTAGA 58.682 38.462 0.00 0.00 32.32 2.59
212 213 6.035758 GCGTGGATAGTTTTAGACCAAAGTAG 59.964 42.308 0.00 0.00 32.32 2.57
213 214 5.870978 GCGTGGATAGTTTTAGACCAAAGTA 59.129 40.000 0.00 0.00 32.32 2.24
214 215 4.694037 GCGTGGATAGTTTTAGACCAAAGT 59.306 41.667 0.00 0.00 32.32 2.66
215 216 4.201685 CGCGTGGATAGTTTTAGACCAAAG 60.202 45.833 0.00 0.00 32.32 2.77
216 217 3.680937 CGCGTGGATAGTTTTAGACCAAA 59.319 43.478 0.00 0.00 32.32 3.28
217 218 3.255725 CGCGTGGATAGTTTTAGACCAA 58.744 45.455 0.00 0.00 32.32 3.67
218 219 2.883574 CGCGTGGATAGTTTTAGACCA 58.116 47.619 0.00 0.00 0.00 4.02
219 220 1.591619 GCGCGTGGATAGTTTTAGACC 59.408 52.381 8.43 0.00 0.00 3.85
220 221 2.264813 TGCGCGTGGATAGTTTTAGAC 58.735 47.619 8.43 0.00 0.00 2.59
221 222 2.658373 TGCGCGTGGATAGTTTTAGA 57.342 45.000 8.43 0.00 0.00 2.10
222 223 2.032894 CCATGCGCGTGGATAGTTTTAG 60.033 50.000 39.87 11.57 42.02 1.85
223 224 1.937223 CCATGCGCGTGGATAGTTTTA 59.063 47.619 39.87 0.00 42.02 1.52
224 225 0.732571 CCATGCGCGTGGATAGTTTT 59.267 50.000 39.87 0.00 42.02 2.43
225 226 0.107897 TCCATGCGCGTGGATAGTTT 60.108 50.000 40.75 0.00 43.20 2.66
226 227 1.520192 TCCATGCGCGTGGATAGTT 59.480 52.632 40.75 0.00 43.20 2.24
227 228 3.216237 TCCATGCGCGTGGATAGT 58.784 55.556 40.75 0.00 43.20 2.12
232 233 3.274586 CCTGATCCATGCGCGTGG 61.275 66.667 37.72 37.72 40.76 4.94
233 234 3.945434 GCCTGATCCATGCGCGTG 61.945 66.667 22.83 22.83 0.00 5.34
236 237 3.643978 GTCGCCTGATCCATGCGC 61.644 66.667 13.73 0.00 45.23 6.09
237 238 2.969238 GGTCGCCTGATCCATGCG 60.969 66.667 12.69 12.69 46.51 4.73
238 239 2.592861 GGGTCGCCTGATCCATGC 60.593 66.667 0.00 0.00 45.47 4.06
242 243 3.083997 AGTGGGGTCGCCTGATCC 61.084 66.667 7.55 0.00 45.42 3.36
243 244 2.359169 TGAGTGGGGTCGCCTGATC 61.359 63.158 7.55 3.48 0.00 2.92
244 245 2.284625 TGAGTGGGGTCGCCTGAT 60.285 61.111 7.55 0.00 0.00 2.90
245 246 3.311110 GTGAGTGGGGTCGCCTGA 61.311 66.667 7.55 0.00 0.00 3.86
246 247 4.394712 GGTGAGTGGGGTCGCCTG 62.395 72.222 7.55 0.00 42.90 4.85
247 248 4.954118 TGGTGAGTGGGGTCGCCT 62.954 66.667 7.55 0.00 45.89 5.52
248 249 4.394712 CTGGTGAGTGGGGTCGCC 62.395 72.222 0.00 0.00 45.91 5.54
250 251 4.742201 CGCTGGTGAGTGGGGTCG 62.742 72.222 0.00 0.00 0.00 4.79
251 252 3.311110 TCGCTGGTGAGTGGGGTC 61.311 66.667 0.00 0.00 0.00 4.46
252 253 3.626924 GTCGCTGGTGAGTGGGGT 61.627 66.667 0.00 0.00 0.00 4.95
253 254 4.742201 CGTCGCTGGTGAGTGGGG 62.742 72.222 0.00 0.00 0.00 4.96
254 255 3.680786 TCGTCGCTGGTGAGTGGG 61.681 66.667 0.00 0.00 0.00 4.61
255 256 2.430921 GTCGTCGCTGGTGAGTGG 60.431 66.667 0.00 0.00 0.00 4.00
256 257 2.430921 GGTCGTCGCTGGTGAGTG 60.431 66.667 0.00 0.00 0.00 3.51
257 258 4.039357 CGGTCGTCGCTGGTGAGT 62.039 66.667 0.00 0.00 0.00 3.41
258 259 3.669036 CTCGGTCGTCGCTGGTGAG 62.669 68.421 0.00 0.00 39.05 3.51
259 260 3.733960 CTCGGTCGTCGCTGGTGA 61.734 66.667 0.00 0.00 39.05 4.02
260 261 4.778415 CCTCGGTCGTCGCTGGTG 62.778 72.222 0.00 0.00 39.05 4.17
262 263 4.477975 GACCTCGGTCGTCGCTGG 62.478 72.222 0.00 9.46 39.05 4.85
290 291 4.144703 GTTCCTCCGACGGCTCCC 62.145 72.222 9.66 0.00 0.00 4.30
291 292 3.066233 GAGTTCCTCCGACGGCTCC 62.066 68.421 9.66 0.00 0.00 4.70
292 293 2.490685 GAGTTCCTCCGACGGCTC 59.509 66.667 9.66 5.84 0.00 4.70
293 294 3.069318 GGAGTTCCTCCGACGGCT 61.069 66.667 9.66 0.00 41.08 5.52
301 302 2.579738 GTCGCCAGGGAGTTCCTC 59.420 66.667 0.00 0.00 46.12 3.71
303 304 4.452733 CCGTCGCCAGGGAGTTCC 62.453 72.222 0.00 0.00 0.00 3.62
316 317 4.814294 ATCTCGCCAACGCCCGTC 62.814 66.667 0.00 0.00 39.84 4.79
317 318 4.814294 GATCTCGCCAACGCCCGT 62.814 66.667 0.00 0.00 39.84 5.28
328 329 2.793790 CTCAGAGGAAATTGCGATCTCG 59.206 50.000 0.00 0.00 43.27 4.04
329 330 4.050553 CTCTCAGAGGAAATTGCGATCTC 58.949 47.826 0.00 0.00 0.00 2.75
330 331 4.057406 CTCTCAGAGGAAATTGCGATCT 57.943 45.455 0.00 0.00 0.00 2.75
342 343 8.185362 AAGTCGTTCTTTCTTCCTCTCAGAGG 62.185 46.154 15.56 15.56 41.17 3.69
343 344 4.217550 AGTCGTTCTTTCTTCCTCTCAGAG 59.782 45.833 0.00 0.00 0.00 3.35
344 345 4.145807 AGTCGTTCTTTCTTCCTCTCAGA 58.854 43.478 0.00 0.00 0.00 3.27
345 346 4.513198 AGTCGTTCTTTCTTCCTCTCAG 57.487 45.455 0.00 0.00 0.00 3.35
346 347 4.341235 TCAAGTCGTTCTTTCTTCCTCTCA 59.659 41.667 0.00 0.00 33.63 3.27
347 348 4.872664 TCAAGTCGTTCTTTCTTCCTCTC 58.127 43.478 0.00 0.00 33.63 3.20
348 349 4.939052 TCAAGTCGTTCTTTCTTCCTCT 57.061 40.909 0.00 0.00 33.63 3.69
349 350 5.230942 TGATCAAGTCGTTCTTTCTTCCTC 58.769 41.667 0.00 0.00 33.63 3.71
350 351 5.215252 TGATCAAGTCGTTCTTTCTTCCT 57.785 39.130 0.00 0.00 33.63 3.36
351 352 7.778470 ATATGATCAAGTCGTTCTTTCTTCC 57.222 36.000 0.00 0.00 33.63 3.46
352 353 9.695884 GAAATATGATCAAGTCGTTCTTTCTTC 57.304 33.333 0.00 0.00 33.63 2.87
353 354 8.669243 GGAAATATGATCAAGTCGTTCTTTCTT 58.331 33.333 0.00 0.00 33.63 2.52
354 355 7.281100 GGGAAATATGATCAAGTCGTTCTTTCT 59.719 37.037 0.00 0.00 33.63 2.52
355 356 7.281100 AGGGAAATATGATCAAGTCGTTCTTTC 59.719 37.037 0.00 0.00 33.63 2.62
356 357 7.066284 CAGGGAAATATGATCAAGTCGTTCTTT 59.934 37.037 0.00 0.00 33.63 2.52
357 358 6.540189 CAGGGAAATATGATCAAGTCGTTCTT 59.460 38.462 0.00 0.00 36.75 2.52
358 359 6.051717 CAGGGAAATATGATCAAGTCGTTCT 58.948 40.000 0.00 0.00 0.00 3.01
359 360 5.817816 ACAGGGAAATATGATCAAGTCGTTC 59.182 40.000 0.00 0.00 0.00 3.95
360 361 5.745227 ACAGGGAAATATGATCAAGTCGTT 58.255 37.500 0.00 0.00 0.00 3.85
361 362 5.359194 ACAGGGAAATATGATCAAGTCGT 57.641 39.130 0.00 0.00 0.00 4.34
362 363 4.752101 GGACAGGGAAATATGATCAAGTCG 59.248 45.833 0.00 0.00 0.00 4.18
363 364 5.066593 GGGACAGGGAAATATGATCAAGTC 58.933 45.833 0.00 0.00 0.00 3.01
364 365 4.444876 CGGGACAGGGAAATATGATCAAGT 60.445 45.833 0.00 0.00 0.00 3.16
365 366 4.067896 CGGGACAGGGAAATATGATCAAG 58.932 47.826 0.00 0.00 0.00 3.02
366 367 3.181445 CCGGGACAGGGAAATATGATCAA 60.181 47.826 0.00 0.00 0.00 2.57
367 368 2.371841 CCGGGACAGGGAAATATGATCA 59.628 50.000 0.00 0.00 0.00 2.92
368 369 2.876079 GCCGGGACAGGGAAATATGATC 60.876 54.545 2.18 0.00 0.00 2.92
369 370 1.073923 GCCGGGACAGGGAAATATGAT 59.926 52.381 2.18 0.00 0.00 2.45
370 371 0.472471 GCCGGGACAGGGAAATATGA 59.528 55.000 2.18 0.00 0.00 2.15
371 372 0.474184 AGCCGGGACAGGGAAATATG 59.526 55.000 2.18 0.00 0.00 1.78
372 373 2.112279 TAGCCGGGACAGGGAAATAT 57.888 50.000 2.18 0.00 0.00 1.28
373 374 1.882308 TTAGCCGGGACAGGGAAATA 58.118 50.000 2.18 0.00 0.00 1.40
374 375 0.996583 TTTAGCCGGGACAGGGAAAT 59.003 50.000 2.18 0.00 0.00 2.17
375 376 0.037160 GTTTAGCCGGGACAGGGAAA 59.963 55.000 2.18 0.00 0.00 3.13
376 377 0.838987 AGTTTAGCCGGGACAGGGAA 60.839 55.000 2.18 0.00 0.00 3.97
377 378 0.041535 TAGTTTAGCCGGGACAGGGA 59.958 55.000 2.18 0.00 0.00 4.20
378 379 0.464452 CTAGTTTAGCCGGGACAGGG 59.536 60.000 2.18 0.00 0.00 4.45
379 380 0.179081 GCTAGTTTAGCCGGGACAGG 60.179 60.000 2.18 0.00 45.95 4.00
380 381 3.364277 GCTAGTTTAGCCGGGACAG 57.636 57.895 2.18 0.00 45.95 3.51
389 390 6.617953 GCGTTTAACAGAACAGGCTAGTTTAG 60.618 42.308 0.00 3.60 0.00 1.85
390 391 5.178067 GCGTTTAACAGAACAGGCTAGTTTA 59.822 40.000 0.00 0.00 0.00 2.01
391 392 4.024302 GCGTTTAACAGAACAGGCTAGTTT 60.024 41.667 0.00 0.00 0.00 2.66
392 393 3.497262 GCGTTTAACAGAACAGGCTAGTT 59.503 43.478 0.00 2.63 0.00 2.24
393 394 3.064931 GCGTTTAACAGAACAGGCTAGT 58.935 45.455 0.00 0.00 0.00 2.57
394 395 3.064207 TGCGTTTAACAGAACAGGCTAG 58.936 45.455 0.00 0.00 0.00 3.42
395 396 3.114668 TGCGTTTAACAGAACAGGCTA 57.885 42.857 0.00 0.00 0.00 3.93
396 397 1.961793 TGCGTTTAACAGAACAGGCT 58.038 45.000 0.00 0.00 0.00 4.58
397 398 2.989422 ATGCGTTTAACAGAACAGGC 57.011 45.000 0.00 0.00 0.00 4.85
398 399 4.451096 AGTGTATGCGTTTAACAGAACAGG 59.549 41.667 0.00 0.00 0.00 4.00
399 400 5.176774 TGAGTGTATGCGTTTAACAGAACAG 59.823 40.000 0.00 0.00 0.00 3.16
400 401 5.051153 TGAGTGTATGCGTTTAACAGAACA 58.949 37.500 0.00 0.00 0.00 3.18
401 402 5.585500 TGAGTGTATGCGTTTAACAGAAC 57.415 39.130 0.00 0.00 0.00 3.01
402 403 6.128391 GGAATGAGTGTATGCGTTTAACAGAA 60.128 38.462 0.00 0.00 0.00 3.02
403 404 5.350365 GGAATGAGTGTATGCGTTTAACAGA 59.650 40.000 0.00 0.00 0.00 3.41
404 405 5.351465 AGGAATGAGTGTATGCGTTTAACAG 59.649 40.000 0.00 0.00 0.00 3.16
405 406 5.242434 AGGAATGAGTGTATGCGTTTAACA 58.758 37.500 0.00 0.00 0.00 2.41
406 407 5.796350 AGGAATGAGTGTATGCGTTTAAC 57.204 39.130 0.00 0.00 0.00 2.01
407 408 9.602568 TTTATAGGAATGAGTGTATGCGTTTAA 57.397 29.630 0.00 0.00 0.00 1.52
408 409 9.772973 ATTTATAGGAATGAGTGTATGCGTTTA 57.227 29.630 0.00 0.00 0.00 2.01
409 410 8.559536 CATTTATAGGAATGAGTGTATGCGTTT 58.440 33.333 0.00 0.00 38.93 3.60
410 411 7.715249 ACATTTATAGGAATGAGTGTATGCGTT 59.285 33.333 4.50 0.00 38.93 4.84
411 412 7.217200 ACATTTATAGGAATGAGTGTATGCGT 58.783 34.615 4.50 0.00 38.93 5.24
412 413 7.658179 ACATTTATAGGAATGAGTGTATGCG 57.342 36.000 4.50 0.00 38.93 4.73
423 424 9.555727 GGTGTGTGTACATACATTTATAGGAAT 57.444 33.333 25.53 0.00 39.36 3.01
424 425 8.764558 AGGTGTGTGTACATACATTTATAGGAA 58.235 33.333 25.53 0.00 39.36 3.36
425 426 8.313944 AGGTGTGTGTACATACATTTATAGGA 57.686 34.615 25.53 0.00 39.36 2.94
426 427 8.958119 AAGGTGTGTGTACATACATTTATAGG 57.042 34.615 25.53 0.00 38.47 2.57
431 432 9.515226 AGAAATAAGGTGTGTGTACATACATTT 57.485 29.630 25.53 22.67 38.47 2.32
434 435 9.594478 CATAGAAATAAGGTGTGTGTACATACA 57.406 33.333 20.14 20.14 39.36 2.29
435 436 9.811995 TCATAGAAATAAGGTGTGTGTACATAC 57.188 33.333 15.23 15.23 39.39 2.39
437 438 8.540388 ACTCATAGAAATAAGGTGTGTGTACAT 58.460 33.333 0.00 0.00 39.39 2.29
438 439 7.817478 CACTCATAGAAATAAGGTGTGTGTACA 59.183 37.037 0.00 0.00 32.62 2.90
439 440 7.201530 GCACTCATAGAAATAAGGTGTGTGTAC 60.202 40.741 0.00 0.00 36.92 2.90
440 441 6.816640 GCACTCATAGAAATAAGGTGTGTGTA 59.183 38.462 0.00 0.00 36.92 2.90
441 442 5.643777 GCACTCATAGAAATAAGGTGTGTGT 59.356 40.000 0.00 0.00 36.92 3.72
442 443 5.065218 GGCACTCATAGAAATAAGGTGTGTG 59.935 44.000 0.00 0.00 37.36 3.82
443 444 5.045578 AGGCACTCATAGAAATAAGGTGTGT 60.046 40.000 0.00 0.00 0.00 3.72
444 445 5.431765 AGGCACTCATAGAAATAAGGTGTG 58.568 41.667 0.00 0.00 0.00 3.82
445 446 5.700402 AGGCACTCATAGAAATAAGGTGT 57.300 39.130 0.00 0.00 0.00 4.16
461 462 2.424957 TCCTCGATATCTTGGAGGCACT 60.425 50.000 16.38 0.00 45.57 4.40
462 463 1.964223 TCCTCGATATCTTGGAGGCAC 59.036 52.381 16.38 0.00 45.57 5.01
463 464 1.964223 GTCCTCGATATCTTGGAGGCA 59.036 52.381 16.38 6.69 45.57 4.75
464 465 1.964223 TGTCCTCGATATCTTGGAGGC 59.036 52.381 16.38 12.91 45.57 4.70
465 466 2.959030 TGTGTCCTCGATATCTTGGAGG 59.041 50.000 15.47 15.47 46.99 4.30
466 467 4.142160 TGTTGTGTCCTCGATATCTTGGAG 60.142 45.833 12.12 6.50 0.00 3.86
467 468 3.767131 TGTTGTGTCCTCGATATCTTGGA 59.233 43.478 8.82 8.82 0.00 3.53
468 469 4.123497 TGTTGTGTCCTCGATATCTTGG 57.877 45.455 0.34 3.05 0.00 3.61
469 470 5.595885 AGATGTTGTGTCCTCGATATCTTG 58.404 41.667 0.34 0.00 29.42 3.02
470 471 5.860941 AGATGTTGTGTCCTCGATATCTT 57.139 39.130 0.34 0.00 29.42 2.40
471 472 5.860941 AAGATGTTGTGTCCTCGATATCT 57.139 39.130 0.34 0.00 33.23 1.98
472 473 8.420374 TTTTAAGATGTTGTGTCCTCGATATC 57.580 34.615 0.00 0.00 0.00 1.63
473 474 8.964476 ATTTTAAGATGTTGTGTCCTCGATAT 57.036 30.769 0.00 0.00 0.00 1.63
474 475 8.664798 CAATTTTAAGATGTTGTGTCCTCGATA 58.335 33.333 0.00 0.00 0.00 2.92
475 476 7.390440 TCAATTTTAAGATGTTGTGTCCTCGAT 59.610 33.333 0.00 0.00 0.00 3.59
476 477 6.708502 TCAATTTTAAGATGTTGTGTCCTCGA 59.291 34.615 0.00 0.00 0.00 4.04
477 478 6.898041 TCAATTTTAAGATGTTGTGTCCTCG 58.102 36.000 0.00 0.00 0.00 4.63
478 479 8.567948 TCTTCAATTTTAAGATGTTGTGTCCTC 58.432 33.333 0.00 0.00 0.00 3.71
479 480 8.463930 TCTTCAATTTTAAGATGTTGTGTCCT 57.536 30.769 0.00 0.00 0.00 3.85
480 481 9.185192 CTTCTTCAATTTTAAGATGTTGTGTCC 57.815 33.333 1.77 0.00 33.17 4.02
481 482 9.736023 ACTTCTTCAATTTTAAGATGTTGTGTC 57.264 29.630 10.71 0.00 37.82 3.67
482 483 9.736023 GACTTCTTCAATTTTAAGATGTTGTGT 57.264 29.630 14.91 4.64 39.85 3.72
483 484 9.734620 TGACTTCTTCAATTTTAAGATGTTGTG 57.265 29.630 14.91 0.00 39.85 3.33
490 491 9.559732 TCTGTGATGACTTCTTCAATTTTAAGA 57.440 29.630 0.00 0.00 37.92 2.10
493 494 8.239314 GCATCTGTGATGACTTCTTCAATTTTA 58.761 33.333 11.25 0.00 37.92 1.52
494 495 7.039923 AGCATCTGTGATGACTTCTTCAATTTT 60.040 33.333 11.25 0.00 37.92 1.82
495 496 6.433404 AGCATCTGTGATGACTTCTTCAATTT 59.567 34.615 11.25 0.00 37.92 1.82
496 497 5.944599 AGCATCTGTGATGACTTCTTCAATT 59.055 36.000 11.25 0.00 37.92 2.32
497 498 5.498393 AGCATCTGTGATGACTTCTTCAAT 58.502 37.500 11.25 0.00 37.92 2.57
498 499 4.903054 AGCATCTGTGATGACTTCTTCAA 58.097 39.130 11.25 0.00 37.92 2.69
499 500 4.548451 AGCATCTGTGATGACTTCTTCA 57.452 40.909 11.25 0.00 39.11 3.02
500 501 4.934001 TGAAGCATCTGTGATGACTTCTTC 59.066 41.667 25.59 20.14 35.37 2.87
501 502 4.903054 TGAAGCATCTGTGATGACTTCTT 58.097 39.130 25.59 15.52 35.37 2.52
502 503 4.548451 TGAAGCATCTGTGATGACTTCT 57.452 40.909 25.59 10.49 35.37 2.85
503 504 6.915544 TTATGAAGCATCTGTGATGACTTC 57.084 37.500 22.49 22.49 35.15 3.01
504 505 7.052248 TGATTATGAAGCATCTGTGATGACTT 58.948 34.615 11.25 12.31 0.00 3.01
505 506 6.589135 TGATTATGAAGCATCTGTGATGACT 58.411 36.000 11.25 5.49 0.00 3.41
506 507 6.704937 TCTGATTATGAAGCATCTGTGATGAC 59.295 38.462 11.25 3.52 0.00 3.06
507 508 6.704937 GTCTGATTATGAAGCATCTGTGATGA 59.295 38.462 11.25 0.00 0.00 2.92
508 509 6.346678 CGTCTGATTATGAAGCATCTGTGATG 60.347 42.308 3.42 3.42 0.00 3.07
509 510 5.695363 CGTCTGATTATGAAGCATCTGTGAT 59.305 40.000 0.00 0.00 0.00 3.06
510 511 5.045872 CGTCTGATTATGAAGCATCTGTGA 58.954 41.667 0.00 0.00 0.00 3.58
511 512 4.210746 CCGTCTGATTATGAAGCATCTGTG 59.789 45.833 0.00 0.00 0.00 3.66
512 513 4.375272 CCGTCTGATTATGAAGCATCTGT 58.625 43.478 0.00 0.00 0.00 3.41
513 514 3.744942 CCCGTCTGATTATGAAGCATCTG 59.255 47.826 0.00 0.00 0.00 2.90
514 515 3.643320 TCCCGTCTGATTATGAAGCATCT 59.357 43.478 0.00 0.00 0.00 2.90
515 516 3.743396 GTCCCGTCTGATTATGAAGCATC 59.257 47.826 0.00 0.00 0.00 3.91
516 517 3.733337 GTCCCGTCTGATTATGAAGCAT 58.267 45.455 0.00 0.00 0.00 3.79
517 518 2.481276 CGTCCCGTCTGATTATGAAGCA 60.481 50.000 0.00 0.00 0.00 3.91
518 519 2.128035 CGTCCCGTCTGATTATGAAGC 58.872 52.381 0.00 0.00 0.00 3.86
519 520 3.438297 ACGTCCCGTCTGATTATGAAG 57.562 47.619 0.00 0.00 33.69 3.02
572 573 0.878416 TGTAAGGCGCTCGCATTTTT 59.122 45.000 18.82 8.26 42.75 1.94
573 574 0.168128 GTGTAAGGCGCTCGCATTTT 59.832 50.000 18.82 10.48 42.75 1.82
574 575 0.673644 AGTGTAAGGCGCTCGCATTT 60.674 50.000 18.82 12.73 42.75 2.32
575 576 1.079127 AGTGTAAGGCGCTCGCATT 60.079 52.632 17.81 17.81 46.98 3.56
576 577 1.811266 CAGTGTAAGGCGCTCGCAT 60.811 57.895 16.36 6.04 44.11 4.73
577 578 2.432456 CAGTGTAAGGCGCTCGCA 60.432 61.111 16.36 0.00 44.11 5.10
578 579 3.188786 CCAGTGTAAGGCGCTCGC 61.189 66.667 7.64 5.60 35.42 5.03
579 580 3.188786 GCCAGTGTAAGGCGCTCG 61.189 66.667 7.64 0.00 43.15 5.03
597 598 2.657237 GATCCATCTACCGGCCCG 59.343 66.667 0.00 0.00 0.00 6.13
598 599 2.207924 ACGATCCATCTACCGGCCC 61.208 63.158 0.00 0.00 0.00 5.80
599 600 1.006102 CACGATCCATCTACCGGCC 60.006 63.158 0.00 0.00 0.00 6.13
600 601 1.664965 GCACGATCCATCTACCGGC 60.665 63.158 0.00 0.00 0.00 6.13
601 602 1.371758 CGCACGATCCATCTACCGG 60.372 63.158 0.00 0.00 0.00 5.28
602 603 0.934901 CACGCACGATCCATCTACCG 60.935 60.000 0.00 0.00 0.00 4.02
603 604 1.215655 GCACGCACGATCCATCTACC 61.216 60.000 0.00 0.00 0.00 3.18
604 605 0.249073 AGCACGCACGATCCATCTAC 60.249 55.000 0.00 0.00 0.00 2.59
605 606 0.030773 GAGCACGCACGATCCATCTA 59.969 55.000 0.00 0.00 0.00 1.98
606 607 1.227089 GAGCACGCACGATCCATCT 60.227 57.895 0.00 0.00 0.00 2.90
607 608 2.240500 GGAGCACGCACGATCCATC 61.241 63.158 1.91 0.00 0.00 3.51
608 609 2.202932 GGAGCACGCACGATCCAT 60.203 61.111 1.91 0.00 0.00 3.41
609 610 3.690280 TGGAGCACGCACGATCCA 61.690 61.111 5.29 5.29 39.50 3.41
610 611 3.188786 GTGGAGCACGCACGATCC 61.189 66.667 0.00 0.00 0.00 3.36
653 654 4.499023 CCATCGACGGCGCGTTTG 62.499 66.667 5.31 17.34 41.37 2.93
654 655 4.728102 TCCATCGACGGCGCGTTT 62.728 61.111 5.31 9.02 41.37 3.60
665 666 2.658593 GTGCGATCGGGTCCATCG 60.659 66.667 18.30 7.14 44.94 3.84
666 667 2.280186 GGTGCGATCGGGTCCATC 60.280 66.667 18.30 2.36 0.00 3.51
667 668 3.861797 GGGTGCGATCGGGTCCAT 61.862 66.667 18.30 0.00 0.00 3.41
669 670 4.090588 TTGGGTGCGATCGGGTCC 62.091 66.667 18.30 0.00 0.00 4.46
670 671 2.511600 CTTGGGTGCGATCGGGTC 60.512 66.667 18.30 0.16 0.00 4.46
671 672 3.000819 TCTTGGGTGCGATCGGGT 61.001 61.111 18.30 0.00 0.00 5.28
672 673 2.202932 CTCTTGGGTGCGATCGGG 60.203 66.667 18.30 0.00 0.00 5.14
738 739 3.807622 TCACCGCTTAAATATAGCAGTGC 59.192 43.478 7.13 7.13 43.42 4.40
739 740 4.211374 GGTCACCGCTTAAATATAGCAGTG 59.789 45.833 6.13 6.13 44.51 3.66
742 743 3.389983 AGGGTCACCGCTTAAATATAGCA 59.610 43.478 0.00 0.00 43.47 3.49
772 1462 1.012486 GTACGGCTGGTCTTGGTTCG 61.012 60.000 0.00 0.00 0.00 3.95
779 1481 2.282674 TGGACGTACGGCTGGTCT 60.283 61.111 22.53 0.00 0.00 3.85
796 1498 1.826054 CGATCGCAGGGAGGAGAGT 60.826 63.158 0.26 0.00 0.00 3.24
797 1499 1.527148 TCGATCGCAGGGAGGAGAG 60.527 63.158 11.09 0.00 0.00 3.20
798 1500 1.824329 GTCGATCGCAGGGAGGAGA 60.824 63.158 11.09 0.00 0.00 3.71
799 1501 2.725008 GTCGATCGCAGGGAGGAG 59.275 66.667 11.09 0.00 0.00 3.69
802 1504 2.725008 GAGGTCGATCGCAGGGAG 59.275 66.667 11.09 0.00 0.00 4.30
811 1513 1.930908 GACCACGAACGGAGGTCGAT 61.931 60.000 14.67 0.00 42.02 3.59
876 1579 2.279502 TATGGGCACGTCTCGTCTGC 62.280 60.000 0.00 0.00 38.32 4.26
883 1586 2.752903 GGAAATGTTTATGGGCACGTCT 59.247 45.455 0.00 0.00 0.00 4.18
884 1587 2.159296 GGGAAATGTTTATGGGCACGTC 60.159 50.000 0.00 0.00 0.00 4.34
885 1588 1.822371 GGGAAATGTTTATGGGCACGT 59.178 47.619 0.00 0.00 0.00 4.49
886 1589 2.099098 GAGGGAAATGTTTATGGGCACG 59.901 50.000 0.00 0.00 0.00 5.34
887 1590 2.430694 GGAGGGAAATGTTTATGGGCAC 59.569 50.000 0.00 0.00 0.00 5.01
888 1591 2.314549 AGGAGGGAAATGTTTATGGGCA 59.685 45.455 0.00 0.00 0.00 5.36
889 1592 2.959030 GAGGAGGGAAATGTTTATGGGC 59.041 50.000 0.00 0.00 0.00 5.36
1128 1831 4.318332 CGATAATTCATCCAAGGCTGCTA 58.682 43.478 0.00 0.00 0.00 3.49
1155 1858 2.736682 GGACGGATCAACCAACGCG 61.737 63.158 3.53 3.53 38.90 6.01
1158 1861 1.069500 CAAACGGACGGATCAACCAAC 60.069 52.381 0.00 0.00 38.90 3.77
1176 1886 5.001232 GCAGTTTATGTAGAACCCTGTCAA 58.999 41.667 0.00 0.00 0.00 3.18
1202 1912 4.680237 TGCACCTCCTTGTCCGCG 62.680 66.667 0.00 0.00 0.00 6.46
1986 2700 4.802051 CCCCGGCTGGTGGTGATG 62.802 72.222 11.58 0.00 0.00 3.07
2193 2907 2.045045 TTCCCGGCCAGCTGAATG 60.045 61.111 17.39 3.52 0.00 2.67
2355 3069 5.538118 TGAAAGTACCTACATATCGGCATG 58.462 41.667 0.00 0.00 0.00 4.06
2374 3088 8.853077 AGATGATGACAATTTACAGTCTGAAA 57.147 30.769 6.91 3.60 35.81 2.69
2380 3094 9.809096 CTAGTGTAGATGATGACAATTTACAGT 57.191 33.333 4.47 4.47 33.21 3.55
2436 3158 9.100197 ACCTTTTTATCACCCAATCACTAATTT 57.900 29.630 0.00 0.00 0.00 1.82
2611 3337 2.028112 GGATGCTTACAGTGACAGGACA 60.028 50.000 0.00 0.00 0.00 4.02
2615 3341 3.599730 TCTGGATGCTTACAGTGACAG 57.400 47.619 11.38 0.00 36.17 3.51
2658 3395 7.894376 AATTATTTCAGTTTGAGCCATGTTG 57.106 32.000 0.00 0.00 0.00 3.33
2663 3400 6.567687 TCGAAATTATTTCAGTTTGAGCCA 57.432 33.333 16.57 0.00 39.63 4.75
2664 3401 7.250569 TGATCGAAATTATTTCAGTTTGAGCC 58.749 34.615 16.57 4.14 39.63 4.70
2688 3425 3.499157 CACAATTCCAGTGGCCAAATTTG 59.501 43.478 7.24 11.40 33.43 2.32
2696 3433 3.347216 ACTGTATCACAATTCCAGTGGC 58.653 45.455 3.51 0.00 37.58 5.01
2739 3477 3.565482 TGCAGAAATGGTCAGAACAGTTC 59.435 43.478 19.02 19.02 41.66 3.01
2746 3484 5.945191 TCATATTGTTGCAGAAATGGTCAGA 59.055 36.000 6.27 0.00 0.00 3.27
2763 3501 7.772166 TGTAGTACAGAACAGAGGTCATATTG 58.228 38.462 0.00 0.00 0.00 1.90
2826 3564 3.899734 TGTCAAATTTCCAATGCTGTCG 58.100 40.909 0.00 0.00 0.00 4.35
2879 3622 5.860941 TGACACACATGGTTAATGGTTTT 57.139 34.783 0.00 0.00 40.94 2.43
2883 3626 7.250569 GTCTATTTGACACACATGGTTAATGG 58.749 38.462 0.00 0.00 44.73 3.16
2925 3668 1.909302 TCAGAGGCAAGGTTAGAAGGG 59.091 52.381 0.00 0.00 0.00 3.95
2934 3677 3.683802 AGTGAAAAGATCAGAGGCAAGG 58.316 45.455 0.00 0.00 39.19 3.61
2947 3690 2.810852 GAGAACTGCAGGGAGTGAAAAG 59.189 50.000 19.93 0.00 0.00 2.27
3031 3774 6.822667 TCAATATATGCATTGGGCTTACAG 57.177 37.500 3.54 0.00 45.15 2.74
3081 3824 8.755696 TTTTGAAATGTGGAATGTTAGTATGC 57.244 30.769 0.00 0.00 0.00 3.14
3125 3869 1.139734 GATCGCTCCGCTGAACTGA 59.860 57.895 0.00 0.00 0.00 3.41
3202 3946 1.266989 GCCGGTGAAAGAAACTTGAGG 59.733 52.381 1.90 0.00 0.00 3.86
3206 3950 3.288092 AGAAAGCCGGTGAAAGAAACTT 58.712 40.909 1.90 0.00 0.00 2.66
3209 3953 2.621526 GGAAGAAAGCCGGTGAAAGAAA 59.378 45.455 1.90 0.00 0.00 2.52
3343 4476 2.714985 GAGCGATTCGTTACTCGTCATC 59.285 50.000 8.03 0.00 40.80 2.92
3344 4477 2.541178 GGAGCGATTCGTTACTCGTCAT 60.541 50.000 8.03 0.00 40.80 3.06
3345 4478 1.202110 GGAGCGATTCGTTACTCGTCA 60.202 52.381 8.03 0.00 40.80 4.35
3371 4504 7.505585 TCATCATGAGGAAAAAGGTAAACAACT 59.494 33.333 7.78 0.00 0.00 3.16
3381 4514 8.405418 ACCATATCATCATCATGAGGAAAAAG 57.595 34.615 14.88 5.28 40.75 2.27
3386 4519 5.708697 GCAAACCATATCATCATCATGAGGA 59.291 40.000 13.16 13.16 42.53 3.71
3388 4521 6.569179 TGCAAACCATATCATCATCATGAG 57.431 37.500 0.09 0.00 42.53 2.90
3391 4524 7.533289 TTCATGCAAACCATATCATCATCAT 57.467 32.000 0.00 0.00 31.47 2.45
3392 4525 6.963083 TTCATGCAAACCATATCATCATCA 57.037 33.333 0.00 0.00 31.47 3.07
3393 4526 9.350357 GTTATTCATGCAAACCATATCATCATC 57.650 33.333 0.00 0.00 31.47 2.92
3438 4571 3.493176 GCCAGCCTCATTGAAGTTTGTTT 60.493 43.478 0.00 0.00 0.00 2.83
3490 4623 7.657354 TGTATACATAAGTGCACCATCAGATTC 59.343 37.037 14.63 0.03 0.00 2.52
3496 4629 7.210174 TCTCTTGTATACATAAGTGCACCATC 58.790 38.462 14.63 0.00 0.00 3.51
3553 4686 5.423015 TCATCATCCTACACTTTCTGAAGC 58.577 41.667 0.00 0.00 36.29 3.86
3620 4753 5.221581 GGCTCAAAAGGATGCCAAATATCAT 60.222 40.000 0.00 0.00 44.34 2.45
3665 4798 9.940974 TGTATGTACCTAAAGTCCTAATTCCTA 57.059 33.333 0.00 0.00 0.00 2.94
3666 4799 8.849543 TGTATGTACCTAAAGTCCTAATTCCT 57.150 34.615 0.00 0.00 0.00 3.36
3843 5242 6.073765 GCTATGTAATATGTTTCCGTGTCCAG 60.074 42.308 0.00 0.00 0.00 3.86
3968 5371 2.937379 ATCTGGATCGCCTGTGCTGC 62.937 60.000 0.00 0.00 34.91 5.25
3969 5372 0.390492 TATCTGGATCGCCTGTGCTG 59.610 55.000 0.00 0.00 34.91 4.41
3970 5373 0.678395 CTATCTGGATCGCCTGTGCT 59.322 55.000 0.00 0.00 34.91 4.40
4001 5404 4.216708 ACTAGTTAGGAGTCTGGTATGGC 58.783 47.826 0.00 0.00 0.00 4.40
4009 5412 6.464180 CGGTAGATGGTACTAGTTAGGAGTCT 60.464 46.154 0.00 0.91 0.00 3.24
4010 5413 5.700373 CGGTAGATGGTACTAGTTAGGAGTC 59.300 48.000 0.00 0.00 0.00 3.36
4027 5430 7.002879 TGCTAAGAACTAACCTATCGGTAGAT 58.997 38.462 3.68 0.00 44.73 1.98
4068 5473 1.556911 ACGAGGAAATGGAGTGAGCAT 59.443 47.619 0.00 0.00 0.00 3.79
4154 5559 7.027778 ACTCAAGATGGTGTTTACTTTTGAC 57.972 36.000 0.00 0.00 0.00 3.18
4157 5562 7.122055 TGTGAACTCAAGATGGTGTTTACTTTT 59.878 33.333 0.00 0.00 32.53 2.27
4159 5564 6.119536 TGTGAACTCAAGATGGTGTTTACTT 58.880 36.000 0.00 0.00 32.53 2.24
4161 5566 6.038271 AGTTGTGAACTCAAGATGGTGTTTAC 59.962 38.462 0.00 0.00 37.02 2.01
4166 5571 3.304257 GCAGTTGTGAACTCAAGATGGTG 60.304 47.826 0.00 0.00 40.46 4.17
4181 5586 8.144478 ACTAATATCTGAATGATACGCAGTTGT 58.856 33.333 0.00 0.00 45.11 3.32
4356 5761 5.123502 CACTTTGGTGGATGAGAAAGATGAG 59.876 44.000 0.00 0.00 39.59 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.