Multiple sequence alignment - TraesCS4A01G003600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G003600 chr4A 100.000 7294 0 0 720 8013 2797484 2790191 0.000000e+00 13470.0
1 TraesCS4A01G003600 chr4A 100.000 430 0 0 1 430 2798203 2797774 0.000000e+00 795.0
2 TraesCS4A01G003600 chr4A 82.895 76 12 1 7592 7666 360666680 360666605 5.190000e-07 67.6
3 TraesCS4A01G003600 chr4A 91.489 47 4 0 6754 6800 27643564 27643610 1.870000e-06 65.8
4 TraesCS4A01G003600 chr4D 95.918 3381 110 12 2027 5389 468693441 468696811 0.000000e+00 5454.0
5 TraesCS4A01G003600 chr4D 91.673 1285 86 15 5493 6764 468696929 468698205 0.000000e+00 1760.0
6 TraesCS4A01G003600 chr4D 96.752 739 20 2 720 1458 468692116 468692850 0.000000e+00 1229.0
7 TraesCS4A01G003600 chr4D 85.082 1287 87 44 6799 8013 468698210 468699463 0.000000e+00 1216.0
8 TraesCS4A01G003600 chr4D 92.651 381 22 2 1644 2022 468693015 468693391 1.970000e-150 544.0
9 TraesCS4A01G003600 chr4D 88.177 203 15 3 228 430 468691741 468691934 4.840000e-57 233.0
10 TraesCS4A01G003600 chr4D 94.167 120 3 1 1513 1632 468692837 468692952 6.390000e-41 180.0
11 TraesCS4A01G003600 chr4D 94.203 69 2 2 5398 5464 468696862 468696930 3.960000e-18 104.0
12 TraesCS4A01G003600 chr4D 89.744 78 4 1 1540 1617 468692948 468693021 6.620000e-16 97.1
13 TraesCS4A01G003600 chr4B 95.908 1906 68 5 2027 3928 588431044 588432943 0.000000e+00 3079.0
14 TraesCS4A01G003600 chr4B 94.303 1457 50 13 3939 5389 588432990 588434419 0.000000e+00 2200.0
15 TraesCS4A01G003600 chr4B 94.204 1225 59 4 720 1944 588428764 588429976 0.000000e+00 1858.0
16 TraesCS4A01G003600 chr4B 91.149 1288 91 15 5493 6764 588434796 588436076 0.000000e+00 1725.0
17 TraesCS4A01G003600 chr4B 88.629 897 69 16 6799 7689 588436081 588436950 0.000000e+00 1061.0
18 TraesCS4A01G003600 chr4B 90.380 395 22 8 1637 2028 588430417 588430798 9.280000e-139 505.0
19 TraesCS4A01G003600 chr4B 88.235 204 14 4 228 430 588428391 588428585 1.340000e-57 235.0
20 TraesCS4A01G003600 chr4B 88.119 101 8 1 7720 7820 588437264 588437360 5.080000e-22 117.0
21 TraesCS4A01G003600 chr4B 96.296 54 2 0 5398 5451 588434470 588434523 1.110000e-13 89.8
22 TraesCS4A01G003600 chr1B 81.227 538 68 18 7003 7529 44934538 44935053 3.480000e-108 403.0
23 TraesCS4A01G003600 chr1B 91.489 47 3 1 6763 6808 6869177 6869223 6.710000e-06 63.9
24 TraesCS4A01G003600 chr3B 83.938 193 28 3 5 195 20730962 20731153 1.780000e-41 182.0
25 TraesCS4A01G003600 chr7B 83.246 191 29 3 7 195 461245971 461245782 1.070000e-38 172.0
26 TraesCS4A01G003600 chr7B 82.383 193 31 3 5 195 669129907 669130098 1.790000e-36 165.0
27 TraesCS4A01G003600 chr5A 82.902 193 30 3 5 195 624677464 624677655 3.850000e-38 171.0
28 TraesCS4A01G003600 chr5A 82.383 193 31 3 5 195 672743532 672743341 1.790000e-36 165.0
29 TraesCS4A01G003600 chr2B 82.902 193 30 3 5 195 389456995 389457186 3.850000e-38 171.0
30 TraesCS4A01G003600 chr2A 82.902 193 30 3 5 195 759335202 759335393 3.850000e-38 171.0
31 TraesCS4A01G003600 chr2A 82.564 195 27 6 5 195 1501833 1502024 1.790000e-36 165.0
32 TraesCS4A01G003600 chr2A 95.455 44 0 2 6763 6804 625025857 625025814 1.440000e-07 69.4
33 TraesCS4A01G003600 chr6D 82.383 193 31 3 5 195 470623772 470623963 1.790000e-36 165.0
34 TraesCS4A01G003600 chr6D 97.500 40 1 0 6763 6802 330111458 330111497 1.440000e-07 69.4
35 TraesCS4A01G003600 chr1D 100.000 38 0 0 6764 6801 22557790 22557827 4.010000e-08 71.3
36 TraesCS4A01G003600 chr1D 97.436 39 1 0 6763 6801 277362559 277362521 5.190000e-07 67.6
37 TraesCS4A01G003600 chr2D 97.500 40 0 1 6766 6804 482662674 482662635 5.190000e-07 67.6
38 TraesCS4A01G003600 chr1A 100.000 36 0 0 6767 6802 330769269 330769234 5.190000e-07 67.6
39 TraesCS4A01G003600 chr3A 89.796 49 3 1 6755 6801 725708854 725708902 2.410000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G003600 chr4A 2790191 2798203 8012 True 7132.500000 13470 100.000000 1 8013 2 chr4A.!!$R2 8012
1 TraesCS4A01G003600 chr4D 468691741 468699463 7722 False 1201.900000 5454 92.040778 228 8013 9 chr4D.!!$F1 7785
2 TraesCS4A01G003600 chr4B 588428391 588437360 8969 False 1207.755556 3079 91.913667 228 7820 9 chr4B.!!$F1 7592
3 TraesCS4A01G003600 chr1B 44934538 44935053 515 False 403.000000 403 81.227000 7003 7529 1 chr1B.!!$F2 526

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
180 181 0.100861 TATGCGTGCGTCCGTTCATA 59.899 50.000 0.00 0.0 0.00 2.15 F
271 273 0.237498 GGGAGAAGAAAAACGTGCGG 59.763 55.000 0.00 0.0 0.00 5.69 F
273 275 0.237498 GAGAAGAAAAACGTGCGGGG 59.763 55.000 0.00 0.0 0.00 5.73 F
275 277 0.317519 GAAGAAAAACGTGCGGGGTG 60.318 55.000 0.00 0.0 0.00 4.61 F
2247 3245 1.380524 TTTGTCGTTTCGGCCTTTGA 58.619 45.000 0.00 0.0 0.00 2.69 F
2529 3527 2.615747 GGACTGGTAAACCAAGAGCCTC 60.616 54.545 2.97 0.0 46.97 4.70 F
2955 3953 2.787473 TGTGATAAGGCAGAAGGGTG 57.213 50.000 0.00 0.0 0.00 4.61 F
4753 5797 1.112315 TTCATTTGGGCAACAGCGGT 61.112 50.000 0.00 0.0 39.74 5.68 F
4916 5960 0.703488 TGGCCCATTCAACTCATGGA 59.297 50.000 0.00 0.0 43.70 3.41 F
6330 7703 0.610174 TGGCTTCTTGACAGAGCGAT 59.390 50.000 0.00 0.0 0.00 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1478 1480 2.427232 GCACTTGCACAATGTGATGT 57.573 45.000 18.66 8.86 41.59 3.06 R
2230 3228 0.871722 CATCAAAGGCCGAAACGACA 59.128 50.000 0.00 0.00 0.00 4.35 R
2247 3245 2.881111 ATATCAGCATCTGCAGGCAT 57.119 45.000 15.13 3.64 45.16 4.40 R
2425 3423 3.753272 TGAGTTGCCAATCTTTAGTGAGC 59.247 43.478 0.00 0.00 0.00 4.26 R
3176 4174 0.814010 ATGGCCCGTAATCGTCAAGC 60.814 55.000 0.00 0.00 35.01 4.01 R
3638 4638 1.499007 CCCCACATGGCTACCCTAAAT 59.501 52.381 0.00 0.00 0.00 1.40 R
4789 5833 0.670162 AGCCACTGTGTTCAATGCAC 59.330 50.000 7.08 0.00 37.37 4.57 R
6320 7693 0.038251 TGGTGTGACATCGCTCTGTC 60.038 55.000 8.20 8.20 44.70 3.51 R
6369 7742 0.106868 TTGGGACTATCTCCGCTCGA 60.107 55.000 0.00 0.00 40.56 4.04 R
7379 8781 0.248539 GCTACGGACACACGAGGATC 60.249 60.000 0.00 0.00 37.61 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.370364 ACATTGGTGTTCGCATTAATCC 57.630 40.909 0.00 0.00 34.01 3.01
22 23 4.016444 ACATTGGTGTTCGCATTAATCCT 58.984 39.130 0.00 0.00 34.01 3.24
23 24 4.142403 ACATTGGTGTTCGCATTAATCCTG 60.142 41.667 0.00 0.00 34.01 3.86
24 25 3.342377 TGGTGTTCGCATTAATCCTGA 57.658 42.857 0.00 0.00 0.00 3.86
25 26 3.680490 TGGTGTTCGCATTAATCCTGAA 58.320 40.909 0.00 0.00 0.00 3.02
26 27 4.269183 TGGTGTTCGCATTAATCCTGAAT 58.731 39.130 0.00 0.00 0.00 2.57
27 28 4.704540 TGGTGTTCGCATTAATCCTGAATT 59.295 37.500 0.00 0.00 0.00 2.17
28 29 5.184864 TGGTGTTCGCATTAATCCTGAATTT 59.815 36.000 0.00 0.00 0.00 1.82
29 30 6.375736 TGGTGTTCGCATTAATCCTGAATTTA 59.624 34.615 0.00 0.00 0.00 1.40
30 31 7.068103 TGGTGTTCGCATTAATCCTGAATTTAT 59.932 33.333 0.00 0.00 0.00 1.40
31 32 7.920682 GGTGTTCGCATTAATCCTGAATTTATT 59.079 33.333 0.00 0.00 0.00 1.40
32 33 9.301153 GTGTTCGCATTAATCCTGAATTTATTT 57.699 29.630 0.00 0.00 0.00 1.40
33 34 9.515020 TGTTCGCATTAATCCTGAATTTATTTC 57.485 29.630 0.00 0.00 34.72 2.17
34 35 9.515020 GTTCGCATTAATCCTGAATTTATTTCA 57.485 29.630 0.00 0.00 42.09 2.69
44 45 5.560966 TGAATTTATTTCAGGCCTTCGAC 57.439 39.130 0.00 0.00 39.44 4.20
45 46 4.094294 TGAATTTATTTCAGGCCTTCGACG 59.906 41.667 0.00 0.00 39.44 5.12
46 47 3.322211 TTTATTTCAGGCCTTCGACGA 57.678 42.857 0.00 0.00 0.00 4.20
47 48 3.536956 TTATTTCAGGCCTTCGACGAT 57.463 42.857 0.00 0.00 0.00 3.73
48 49 1.656652 ATTTCAGGCCTTCGACGATG 58.343 50.000 0.00 0.17 0.00 3.84
49 50 1.019278 TTTCAGGCCTTCGACGATGC 61.019 55.000 0.00 10.48 0.00 3.91
50 51 1.888436 TTCAGGCCTTCGACGATGCT 61.888 55.000 0.00 3.26 0.00 3.79
51 52 1.880340 CAGGCCTTCGACGATGCTC 60.880 63.158 0.00 9.02 0.00 4.26
52 53 2.956964 GGCCTTCGACGATGCTCG 60.957 66.667 16.42 4.36 46.93 5.03
61 62 3.786101 CGATGCTCGTTCAGTGGG 58.214 61.111 0.00 0.00 34.72 4.61
62 63 1.215382 CGATGCTCGTTCAGTGGGA 59.785 57.895 0.00 0.00 34.72 4.37
63 64 0.803768 CGATGCTCGTTCAGTGGGAG 60.804 60.000 0.00 0.00 34.72 4.30
64 65 0.532573 GATGCTCGTTCAGTGGGAGA 59.467 55.000 9.89 0.00 0.00 3.71
65 66 0.976641 ATGCTCGTTCAGTGGGAGAA 59.023 50.000 9.89 1.57 0.00 2.87
66 67 0.318441 TGCTCGTTCAGTGGGAGAAG 59.682 55.000 9.89 0.00 0.00 2.85
67 68 0.603569 GCTCGTTCAGTGGGAGAAGA 59.396 55.000 9.89 0.00 0.00 2.87
68 69 1.670380 GCTCGTTCAGTGGGAGAAGAC 60.670 57.143 9.89 0.00 0.00 3.01
69 70 0.596577 TCGTTCAGTGGGAGAAGACG 59.403 55.000 0.00 0.00 0.00 4.18
70 71 0.314302 CGTTCAGTGGGAGAAGACGT 59.686 55.000 0.00 0.00 0.00 4.34
71 72 1.269621 CGTTCAGTGGGAGAAGACGTT 60.270 52.381 0.00 0.00 0.00 3.99
72 73 2.405172 GTTCAGTGGGAGAAGACGTTC 58.595 52.381 0.00 0.00 0.00 3.95
73 74 0.966920 TCAGTGGGAGAAGACGTTCC 59.033 55.000 0.00 0.00 32.48 3.62
93 94 3.270000 TCGACCGCGAGATGTTCA 58.730 55.556 8.23 0.00 42.51 3.18
94 95 1.807226 TCGACCGCGAGATGTTCAT 59.193 52.632 8.23 0.00 42.51 2.57
95 96 0.525455 TCGACCGCGAGATGTTCATG 60.525 55.000 8.23 0.00 42.51 3.07
96 97 1.482621 CGACCGCGAGATGTTCATGG 61.483 60.000 8.23 0.00 40.82 3.66
97 98 0.460284 GACCGCGAGATGTTCATGGT 60.460 55.000 8.23 0.00 36.09 3.55
98 99 0.740868 ACCGCGAGATGTTCATGGTG 60.741 55.000 8.23 0.00 33.13 4.17
99 100 0.460109 CCGCGAGATGTTCATGGTGA 60.460 55.000 8.23 0.00 0.00 4.02
100 101 0.647410 CGCGAGATGTTCATGGTGAC 59.353 55.000 0.00 0.00 0.00 3.67
101 102 1.737029 CGCGAGATGTTCATGGTGACT 60.737 52.381 0.00 0.00 0.00 3.41
102 103 2.350522 GCGAGATGTTCATGGTGACTT 58.649 47.619 0.00 0.00 0.00 3.01
103 104 2.744202 GCGAGATGTTCATGGTGACTTT 59.256 45.455 0.00 0.00 0.00 2.66
104 105 3.425359 GCGAGATGTTCATGGTGACTTTG 60.425 47.826 0.00 0.00 0.00 2.77
105 106 3.748048 CGAGATGTTCATGGTGACTTTGT 59.252 43.478 0.00 0.00 0.00 2.83
106 107 4.929211 CGAGATGTTCATGGTGACTTTGTA 59.071 41.667 0.00 0.00 0.00 2.41
107 108 5.408299 CGAGATGTTCATGGTGACTTTGTAA 59.592 40.000 0.00 0.00 0.00 2.41
108 109 6.073276 CGAGATGTTCATGGTGACTTTGTAAA 60.073 38.462 0.00 0.00 0.00 2.01
109 110 7.519809 CGAGATGTTCATGGTGACTTTGTAAAA 60.520 37.037 0.00 0.00 0.00 1.52
110 111 8.181904 AGATGTTCATGGTGACTTTGTAAAAT 57.818 30.769 0.00 0.00 0.00 1.82
111 112 8.299570 AGATGTTCATGGTGACTTTGTAAAATC 58.700 33.333 0.00 0.00 0.00 2.17
112 113 7.581213 TGTTCATGGTGACTTTGTAAAATCT 57.419 32.000 0.00 0.00 0.00 2.40
113 114 7.648142 TGTTCATGGTGACTTTGTAAAATCTC 58.352 34.615 0.00 0.00 0.00 2.75
114 115 7.284261 TGTTCATGGTGACTTTGTAAAATCTCA 59.716 33.333 0.00 0.00 0.00 3.27
115 116 7.815840 TCATGGTGACTTTGTAAAATCTCAA 57.184 32.000 0.00 0.00 0.00 3.02
116 117 7.874940 TCATGGTGACTTTGTAAAATCTCAAG 58.125 34.615 0.00 0.00 0.00 3.02
117 118 7.719193 TCATGGTGACTTTGTAAAATCTCAAGA 59.281 33.333 0.00 0.00 0.00 3.02
118 119 8.517878 CATGGTGACTTTGTAAAATCTCAAGAT 58.482 33.333 0.00 0.00 36.07 2.40
119 120 9.739276 ATGGTGACTTTGTAAAATCTCAAGATA 57.261 29.630 0.00 0.00 33.73 1.98
120 121 8.999431 TGGTGACTTTGTAAAATCTCAAGATAC 58.001 33.333 0.00 0.00 33.73 2.24
121 122 9.220767 GGTGACTTTGTAAAATCTCAAGATACT 57.779 33.333 0.00 0.00 33.73 2.12
127 128 7.946655 TGTAAAATCTCAAGATACTATGCCG 57.053 36.000 0.00 0.00 33.73 5.69
128 129 6.929049 TGTAAAATCTCAAGATACTATGCCGG 59.071 38.462 0.00 0.00 33.73 6.13
129 130 5.552870 AAATCTCAAGATACTATGCCGGT 57.447 39.130 1.90 0.00 33.73 5.28
130 131 5.552870 AATCTCAAGATACTATGCCGGTT 57.447 39.130 1.90 0.00 33.73 4.44
131 132 4.585955 TCTCAAGATACTATGCCGGTTC 57.414 45.455 1.90 0.00 0.00 3.62
132 133 3.958147 TCTCAAGATACTATGCCGGTTCA 59.042 43.478 1.90 0.00 0.00 3.18
133 134 4.038042 TCTCAAGATACTATGCCGGTTCAG 59.962 45.833 1.90 0.00 0.00 3.02
134 135 3.704566 TCAAGATACTATGCCGGTTCAGT 59.295 43.478 1.90 6.26 0.00 3.41
135 136 4.051922 CAAGATACTATGCCGGTTCAGTC 58.948 47.826 1.90 0.00 0.00 3.51
136 137 3.567397 AGATACTATGCCGGTTCAGTCT 58.433 45.455 1.90 0.00 0.00 3.24
137 138 3.961408 AGATACTATGCCGGTTCAGTCTT 59.039 43.478 1.90 0.00 0.00 3.01
138 139 2.674796 ACTATGCCGGTTCAGTCTTC 57.325 50.000 1.90 0.00 0.00 2.87
139 140 1.899814 ACTATGCCGGTTCAGTCTTCA 59.100 47.619 1.90 0.00 0.00 3.02
140 141 2.093973 ACTATGCCGGTTCAGTCTTCAG 60.094 50.000 1.90 0.00 0.00 3.02
141 142 0.976641 ATGCCGGTTCAGTCTTCAGA 59.023 50.000 1.90 0.00 0.00 3.27
142 143 0.318441 TGCCGGTTCAGTCTTCAGAG 59.682 55.000 1.90 0.00 0.00 3.35
143 144 0.390472 GCCGGTTCAGTCTTCAGAGG 60.390 60.000 1.90 0.00 0.00 3.69
144 145 0.969894 CCGGTTCAGTCTTCAGAGGT 59.030 55.000 0.00 0.00 0.00 3.85
145 146 1.337260 CCGGTTCAGTCTTCAGAGGTG 60.337 57.143 0.00 0.00 0.00 4.00
146 147 1.337260 CGGTTCAGTCTTCAGAGGTGG 60.337 57.143 0.00 0.00 0.00 4.61
147 148 1.694696 GGTTCAGTCTTCAGAGGTGGT 59.305 52.381 0.00 0.00 0.00 4.16
148 149 2.289133 GGTTCAGTCTTCAGAGGTGGTC 60.289 54.545 0.00 0.00 0.00 4.02
149 150 2.365617 GTTCAGTCTTCAGAGGTGGTCA 59.634 50.000 0.00 0.00 0.00 4.02
150 151 2.894731 TCAGTCTTCAGAGGTGGTCAT 58.105 47.619 0.00 0.00 0.00 3.06
151 152 4.047627 TCAGTCTTCAGAGGTGGTCATA 57.952 45.455 0.00 0.00 0.00 2.15
152 153 4.019858 TCAGTCTTCAGAGGTGGTCATAG 58.980 47.826 0.00 0.00 0.00 2.23
153 154 3.131933 CAGTCTTCAGAGGTGGTCATAGG 59.868 52.174 0.00 0.00 0.00 2.57
154 155 2.432510 GTCTTCAGAGGTGGTCATAGGG 59.567 54.545 0.00 0.00 0.00 3.53
155 156 2.314852 TCTTCAGAGGTGGTCATAGGGA 59.685 50.000 0.00 0.00 0.00 4.20
156 157 3.051803 TCTTCAGAGGTGGTCATAGGGAT 60.052 47.826 0.00 0.00 0.00 3.85
157 158 4.170053 TCTTCAGAGGTGGTCATAGGGATA 59.830 45.833 0.00 0.00 0.00 2.59
158 159 4.119556 TCAGAGGTGGTCATAGGGATAG 57.880 50.000 0.00 0.00 0.00 2.08
159 160 2.564947 CAGAGGTGGTCATAGGGATAGC 59.435 54.545 0.00 0.00 0.00 2.97
160 161 1.546476 GAGGTGGTCATAGGGATAGCG 59.454 57.143 0.00 0.00 0.00 4.26
161 162 1.133136 AGGTGGTCATAGGGATAGCGT 60.133 52.381 0.00 0.00 0.00 5.07
162 163 2.109480 AGGTGGTCATAGGGATAGCGTA 59.891 50.000 0.00 0.00 0.00 4.42
163 164 3.097614 GGTGGTCATAGGGATAGCGTAT 58.902 50.000 0.00 0.00 0.00 3.06
164 165 3.119101 GGTGGTCATAGGGATAGCGTATG 60.119 52.174 0.00 0.00 0.00 2.39
165 166 2.496070 TGGTCATAGGGATAGCGTATGC 59.504 50.000 0.00 0.00 43.24 3.14
176 177 3.176578 CGTATGCGTGCGTCCGTT 61.177 61.111 8.37 0.00 0.00 4.44
177 178 2.693285 GTATGCGTGCGTCCGTTC 59.307 61.111 0.00 0.00 0.00 3.95
178 179 2.089936 GTATGCGTGCGTCCGTTCA 61.090 57.895 0.00 0.00 0.00 3.18
179 180 1.153726 TATGCGTGCGTCCGTTCAT 60.154 52.632 0.00 0.00 0.00 2.57
180 181 0.100861 TATGCGTGCGTCCGTTCATA 59.899 50.000 0.00 0.00 0.00 2.15
181 182 1.145759 ATGCGTGCGTCCGTTCATAG 61.146 55.000 0.00 0.00 0.00 2.23
182 183 2.514013 GCGTGCGTCCGTTCATAGG 61.514 63.158 0.00 0.00 0.00 2.57
183 184 1.876714 CGTGCGTCCGTTCATAGGG 60.877 63.158 0.00 0.00 0.00 3.53
184 185 1.520787 GTGCGTCCGTTCATAGGGG 60.521 63.158 0.00 0.00 0.00 4.79
185 186 1.985662 TGCGTCCGTTCATAGGGGT 60.986 57.895 0.00 0.00 0.00 4.95
186 187 1.520787 GCGTCCGTTCATAGGGGTG 60.521 63.158 0.00 0.00 0.00 4.61
187 188 1.952102 GCGTCCGTTCATAGGGGTGA 61.952 60.000 0.00 0.00 0.00 4.02
188 189 0.533491 CGTCCGTTCATAGGGGTGAA 59.467 55.000 0.00 0.00 35.84 3.18
189 190 1.138266 CGTCCGTTCATAGGGGTGAAT 59.862 52.381 0.00 0.00 39.99 2.57
190 191 2.561569 GTCCGTTCATAGGGGTGAATG 58.438 52.381 2.65 2.65 42.21 2.67
191 192 2.093128 GTCCGTTCATAGGGGTGAATGT 60.093 50.000 7.74 0.00 41.40 2.71
192 193 3.133362 GTCCGTTCATAGGGGTGAATGTA 59.867 47.826 7.74 0.00 41.40 2.29
193 194 3.971305 TCCGTTCATAGGGGTGAATGTAT 59.029 43.478 7.74 0.00 41.40 2.29
194 195 4.065088 CCGTTCATAGGGGTGAATGTATG 58.935 47.826 7.74 0.00 41.40 2.39
195 196 4.444306 CCGTTCATAGGGGTGAATGTATGT 60.444 45.833 7.74 0.00 41.40 2.29
196 197 4.511454 CGTTCATAGGGGTGAATGTATGTG 59.489 45.833 0.00 0.00 39.99 3.21
197 198 5.680619 GTTCATAGGGGTGAATGTATGTGA 58.319 41.667 0.00 0.00 39.99 3.58
198 199 5.551305 TCATAGGGGTGAATGTATGTGAG 57.449 43.478 0.00 0.00 0.00 3.51
199 200 2.717639 AGGGGTGAATGTATGTGAGC 57.282 50.000 0.00 0.00 0.00 4.26
200 201 1.134401 AGGGGTGAATGTATGTGAGCG 60.134 52.381 0.00 0.00 0.00 5.03
201 202 1.134521 GGGGTGAATGTATGTGAGCGA 60.135 52.381 0.00 0.00 0.00 4.93
202 203 1.933853 GGGTGAATGTATGTGAGCGAC 59.066 52.381 0.00 0.00 0.00 5.19
203 204 2.616960 GGTGAATGTATGTGAGCGACA 58.383 47.619 0.00 0.00 39.53 4.35
205 206 3.246226 GGTGAATGTATGTGAGCGACATC 59.754 47.826 7.58 2.37 41.91 3.06
206 207 3.060940 GTGAATGTATGTGAGCGACATCG 60.061 47.826 7.58 0.00 41.91 3.84
207 208 2.871182 ATGTATGTGAGCGACATCGT 57.129 45.000 7.58 0.78 41.91 3.73
208 209 2.647529 TGTATGTGAGCGACATCGTT 57.352 45.000 7.58 0.00 41.91 3.85
209 210 2.258755 TGTATGTGAGCGACATCGTTG 58.741 47.619 7.58 0.00 41.91 4.10
210 211 2.259618 GTATGTGAGCGACATCGTTGT 58.740 47.619 7.58 0.00 41.91 3.32
211 212 1.070821 ATGTGAGCGACATCGTTGTG 58.929 50.000 3.34 0.00 41.91 3.33
212 213 0.249280 TGTGAGCGACATCGTTGTGT 60.249 50.000 3.34 0.00 42.22 3.72
213 214 0.859232 GTGAGCGACATCGTTGTGTT 59.141 50.000 3.34 0.00 42.22 3.32
214 215 1.260561 GTGAGCGACATCGTTGTGTTT 59.739 47.619 3.34 0.00 42.22 2.83
215 216 1.937223 TGAGCGACATCGTTGTGTTTT 59.063 42.857 3.34 0.00 42.22 2.43
216 217 2.286125 TGAGCGACATCGTTGTGTTTTG 60.286 45.455 3.34 0.00 42.22 2.44
217 218 1.937223 AGCGACATCGTTGTGTTTTGA 59.063 42.857 3.34 0.00 42.22 2.69
218 219 2.548057 AGCGACATCGTTGTGTTTTGAT 59.452 40.909 3.34 0.00 42.22 2.57
219 220 3.743911 AGCGACATCGTTGTGTTTTGATA 59.256 39.130 3.34 0.00 42.22 2.15
220 221 4.212425 AGCGACATCGTTGTGTTTTGATAA 59.788 37.500 3.34 0.00 42.22 1.75
221 222 4.907010 GCGACATCGTTGTGTTTTGATAAA 59.093 37.500 3.34 0.00 42.22 1.40
222 223 5.396947 GCGACATCGTTGTGTTTTGATAAAA 59.603 36.000 3.34 0.00 42.22 1.52
223 224 6.075310 GCGACATCGTTGTGTTTTGATAAAAA 60.075 34.615 3.34 0.00 42.22 1.94
271 273 0.237498 GGGAGAAGAAAAACGTGCGG 59.763 55.000 0.00 0.00 0.00 5.69
273 275 0.237498 GAGAAGAAAAACGTGCGGGG 59.763 55.000 0.00 0.00 0.00 5.73
274 276 0.464916 AGAAGAAAAACGTGCGGGGT 60.465 50.000 0.00 0.00 0.00 4.95
275 277 0.317519 GAAGAAAAACGTGCGGGGTG 60.318 55.000 0.00 0.00 0.00 4.61
276 278 2.344521 AAGAAAAACGTGCGGGGTGC 62.345 55.000 0.00 0.00 46.70 5.01
303 305 1.890510 GAAACGGGTCGTGTGGCTT 60.891 57.895 0.00 0.00 39.99 4.35
369 371 1.515521 CCACCACAACTCGCTTTCCC 61.516 60.000 0.00 0.00 0.00 3.97
426 428 4.821589 CACCGCCTCTTCCGCTCC 62.822 72.222 0.00 0.00 0.00 4.70
797 799 3.151022 CTCTCCGCCTCCCACCTC 61.151 72.222 0.00 0.00 0.00 3.85
798 800 4.779733 TCTCCGCCTCCCACCTCC 62.780 72.222 0.00 0.00 0.00 4.30
799 801 4.787280 CTCCGCCTCCCACCTCCT 62.787 72.222 0.00 0.00 0.00 3.69
1445 1447 5.989249 TGCATTCAGTATAATTGTGCGATC 58.011 37.500 0.00 0.00 34.06 3.69
1449 1451 7.412346 GCATTCAGTATAATTGTGCGATCTAGG 60.412 40.741 0.00 0.00 0.00 3.02
1473 1475 6.134061 GGTTCTCTTGTTCGTTGTTAATCAC 58.866 40.000 0.00 0.00 0.00 3.06
1474 1476 6.238266 GGTTCTCTTGTTCGTTGTTAATCACA 60.238 38.462 0.00 0.00 0.00 3.58
1475 1477 7.352739 GTTCTCTTGTTCGTTGTTAATCACAT 58.647 34.615 0.00 0.00 34.43 3.21
1476 1478 7.490962 TCTCTTGTTCGTTGTTAATCACATT 57.509 32.000 0.00 0.00 34.43 2.71
1477 1479 7.572759 TCTCTTGTTCGTTGTTAATCACATTC 58.427 34.615 0.00 0.00 34.43 2.67
1478 1480 7.225734 TCTCTTGTTCGTTGTTAATCACATTCA 59.774 33.333 0.00 0.00 34.43 2.57
1495 1497 4.038282 ACATTCACATCACATTGTGCAAGT 59.962 37.500 12.04 7.25 45.29 3.16
1497 1499 2.055838 CACATCACATTGTGCAAGTGC 58.944 47.619 12.04 0.00 40.45 4.40
1747 2496 5.604565 TGACTCAATGTAGCATGGTCTATG 58.395 41.667 0.00 0.00 39.88 2.23
1760 2509 5.047021 GCATGGTCTATGTAGCTAGGAATCA 60.047 44.000 0.00 0.00 39.08 2.57
1799 2548 1.814394 TGCAGGATTCAGATGTTGCAC 59.186 47.619 0.00 0.00 36.71 4.57
1848 2597 3.937706 CTCTGGTTGCCTGATCTTTGTAG 59.062 47.826 0.00 0.00 31.33 2.74
1849 2598 3.012518 CTGGTTGCCTGATCTTTGTAGG 58.987 50.000 0.00 0.00 34.67 3.18
1918 2667 7.510549 AGTTTTGAAACTGCTAATTAGCTGA 57.489 32.000 36.56 20.17 46.80 4.26
1998 2749 5.717119 CCATTGTGATCCTTTTCCTTTCTG 58.283 41.667 0.00 0.00 0.00 3.02
2004 2755 2.494059 TCCTTTTCCTTTCTGCACTCG 58.506 47.619 0.00 0.00 0.00 4.18
2113 3111 7.883391 TTCCTAATCTATCGTTCTCTTGTCT 57.117 36.000 0.00 0.00 0.00 3.41
2117 3115 5.766150 ATCTATCGTTCTCTTGTCTGAGG 57.234 43.478 0.00 0.00 34.98 3.86
2126 3124 2.562298 CTCTTGTCTGAGGCAGAACTCT 59.438 50.000 0.00 0.00 42.46 3.24
2230 3228 8.523915 TCCAACTGTGATAATGCAGATTATTT 57.476 30.769 0.00 0.00 35.29 1.40
2247 3245 1.380524 TTTGTCGTTTCGGCCTTTGA 58.619 45.000 0.00 0.00 0.00 2.69
2457 3455 3.998913 TTGGCAACTCAGGTGATGATA 57.001 42.857 0.00 0.00 37.28 2.15
2482 3480 7.575414 TTCTGGAAGTTGCACAAAATAGTAA 57.425 32.000 0.00 0.00 33.76 2.24
2489 3487 9.423061 GAAGTTGCACAAAATAGTAAAATGGAT 57.577 29.630 0.00 0.00 0.00 3.41
2529 3527 2.615747 GGACTGGTAAACCAAGAGCCTC 60.616 54.545 2.97 0.00 46.97 4.70
2573 3571 3.707102 AGAGACTAAGTTCCCATGCTACC 59.293 47.826 0.00 0.00 0.00 3.18
2657 3655 4.639078 TGCTAATTGGGCTATAGCATCA 57.361 40.909 25.53 19.08 45.10 3.07
2955 3953 2.787473 TGTGATAAGGCAGAAGGGTG 57.213 50.000 0.00 0.00 0.00 4.61
3148 4146 3.261643 TCTGTATCAGGCACAACACATCT 59.738 43.478 0.00 0.00 31.51 2.90
3182 4180 9.508567 GTAAAAATCCTTTCATCTATGCTTGAC 57.491 33.333 0.00 0.00 0.00 3.18
3191 4189 3.364889 TCTATGCTTGACGATTACGGG 57.635 47.619 0.00 0.00 44.46 5.28
3230 4228 3.121929 TCTCAGGGATGGTTAGCTCTT 57.878 47.619 0.00 0.00 0.00 2.85
3318 4316 5.753921 CCAGAACGAGTGAAGGTTATAATCC 59.246 44.000 0.00 0.00 0.00 3.01
3348 4346 9.786224 CAATTTTTACCGCAAAATGTACTTTAC 57.214 29.630 0.00 0.00 36.63 2.01
3355 4353 4.378616 CGCAAAATGTACTTTACTGTGTGC 59.621 41.667 0.00 0.00 0.00 4.57
3356 4354 4.378616 GCAAAATGTACTTTACTGTGTGCG 59.621 41.667 0.00 0.00 0.00 5.34
3419 4417 5.224441 AGGTAGTAGGGCTGGATAAATGAA 58.776 41.667 0.00 0.00 0.00 2.57
3447 4445 9.295214 TGCATATAAACGAATTACACAAAATGG 57.705 29.630 0.00 0.00 0.00 3.16
3476 4474 3.505680 TGTTACTGGAATGGCAATGTCAC 59.494 43.478 0.00 0.00 0.00 3.67
3488 4486 3.450578 GCAATGTCACCCTTGCATAATG 58.549 45.455 7.19 0.00 45.50 1.90
3489 4487 3.119029 GCAATGTCACCCTTGCATAATGT 60.119 43.478 7.19 0.00 45.50 2.71
3652 4652 5.158889 AGAGAAGCTATTTAGGGTAGCCAT 58.841 41.667 14.62 0.22 44.35 4.40
3653 4653 5.012561 AGAGAAGCTATTTAGGGTAGCCATG 59.987 44.000 14.62 0.00 44.35 3.66
3685 4687 6.633500 TCCTTGTTTGTTATGGAGAAGTTG 57.367 37.500 0.00 0.00 0.00 3.16
3687 4689 4.481930 TGTTTGTTATGGAGAAGTTGCG 57.518 40.909 0.00 0.00 0.00 4.85
3690 4692 3.678056 TGTTATGGAGAAGTTGCGTCT 57.322 42.857 0.00 0.00 0.00 4.18
3722 4724 2.014010 TTGGCAGCCTTTGAAATCCT 57.986 45.000 14.15 0.00 0.00 3.24
3723 4725 1.259609 TGGCAGCCTTTGAAATCCTG 58.740 50.000 14.15 1.93 0.00 3.86
3786 4788 5.843673 TTTTGTTCTGTTCAACCAGCATA 57.156 34.783 0.00 0.00 32.32 3.14
3904 4906 6.533819 TGCAGCATTTTCTTTCAAATCTTG 57.466 33.333 0.00 0.00 0.00 3.02
4000 5044 2.229792 GCCACACAGGTCTTGAATCAA 58.770 47.619 0.00 0.00 40.61 2.57
4076 5120 3.808174 GTCTGGTGACAAAGTACCACTTC 59.192 47.826 0.00 0.00 41.80 3.01
4112 5156 3.753272 TCTTGAACCATTTGCTACAGCTC 59.247 43.478 2.44 0.00 42.66 4.09
4198 5242 5.357032 GCTTAAGGGAATAAAAGCACTAGCA 59.643 40.000 4.29 0.00 45.49 3.49
4219 5263 4.070716 CAGAGCTTTGTTCTGAGGATGTT 58.929 43.478 5.67 0.00 42.17 2.71
4371 5415 3.607741 AGAATGTGTCTGCTTCTGATGG 58.392 45.455 0.00 0.00 34.29 3.51
4391 5435 2.531206 GTTCTTCTACTGCTGCTACCG 58.469 52.381 0.00 0.00 0.00 4.02
4441 5485 1.268234 GCAGCACATATTCGAAGGCAC 60.268 52.381 3.35 0.00 0.00 5.01
4528 5572 1.885887 GTATGGTGCAAGTGGCTTGAA 59.114 47.619 12.45 0.00 43.42 2.69
4568 5612 8.450578 ACGAATTCCTTGCAATGATATAAAGA 57.549 30.769 5.20 0.00 0.00 2.52
4592 5636 9.780186 AGATAAAAAGTTACTGCAGACTAACTT 57.220 29.630 25.56 25.56 42.44 2.66
4604 5648 8.557029 ACTGCAGACTAACTTTGTTAAATGTAC 58.443 33.333 23.35 0.00 0.00 2.90
4617 5661 6.993079 TGTTAAATGTACTCTGCTCTGAGAA 58.007 36.000 9.28 0.00 37.50 2.87
4651 5695 5.501156 AGAAGTGTTTCTGGTGAATATCCC 58.499 41.667 0.00 0.00 42.04 3.85
4654 5698 4.019681 AGTGTTTCTGGTGAATATCCCGAA 60.020 41.667 0.00 0.00 31.56 4.30
4753 5797 1.112315 TTCATTTGGGCAACAGCGGT 61.112 50.000 0.00 0.00 39.74 5.68
4772 5816 3.127548 CGGTTGTGGGATTTCAAGAGATG 59.872 47.826 0.00 0.00 0.00 2.90
4789 5833 4.070716 GAGATGCTTGTAAGGATGATGGG 58.929 47.826 3.25 0.00 37.20 4.00
4801 5845 2.159198 GGATGATGGGTGCATTGAACAC 60.159 50.000 0.00 0.00 37.31 3.32
4916 5960 0.703488 TGGCCCATTCAACTCATGGA 59.297 50.000 0.00 0.00 43.70 3.41
5129 6176 8.208903 ACCTATATCGCTCCTTTAAAAGCTTAA 58.791 33.333 0.00 0.00 36.35 1.85
5130 6177 8.496751 CCTATATCGCTCCTTTAAAAGCTTAAC 58.503 37.037 0.00 0.00 36.35 2.01
5195 6251 8.674607 ACGATTTAAATGTTCCAAGATCCTTAC 58.325 33.333 5.17 0.00 0.00 2.34
5302 6358 3.425577 CATGTTGATGCACATACACCC 57.574 47.619 0.00 0.00 35.51 4.61
5314 6370 3.009695 CACATACACCCACCTCCCTTTAA 59.990 47.826 0.00 0.00 0.00 1.52
5372 6432 8.957466 AGAATACAAAATTTCCTTAGTAGTGGC 58.043 33.333 0.00 0.00 0.00 5.01
5373 6433 8.644374 AATACAAAATTTCCTTAGTAGTGGCA 57.356 30.769 0.00 0.00 0.00 4.92
5374 6434 6.327279 ACAAAATTTCCTTAGTAGTGGCAC 57.673 37.500 10.29 10.29 0.00 5.01
5375 6435 5.830991 ACAAAATTTCCTTAGTAGTGGCACA 59.169 36.000 21.41 2.83 0.00 4.57
5376 6436 6.493458 ACAAAATTTCCTTAGTAGTGGCACAT 59.507 34.615 21.41 7.82 44.52 3.21
5377 6437 7.668052 ACAAAATTTCCTTAGTAGTGGCACATA 59.332 33.333 21.41 6.77 44.52 2.29
5389 6449 2.488153 GTGGCACATAGAAAAGACACCC 59.512 50.000 13.86 0.00 44.52 4.61
5446 6548 7.987750 TCACCATTGCTATACAGTACAAAAA 57.012 32.000 0.00 0.00 0.00 1.94
5537 6900 3.025322 TGTCTTTGGGTGATGGTTTGT 57.975 42.857 0.00 0.00 0.00 2.83
5575 6938 8.570488 TGCTTAAATTGCATTTATCGAGATCAT 58.430 29.630 0.00 0.00 34.92 2.45
5671 7034 8.151596 TGTTGTGTTTGTGACTCATAGGTAATA 58.848 33.333 0.00 0.00 32.31 0.98
5688 7051 5.359860 AGGTAATAATGGCTGCTTGGTTTAC 59.640 40.000 0.00 3.63 0.00 2.01
5696 7059 2.288395 GCTGCTTGGTTTACAATGCTGT 60.288 45.455 0.00 0.00 38.65 4.40
5773 7137 3.099141 CCCCCATTTTCATACTTGCAGT 58.901 45.455 0.00 0.00 0.00 4.40
5882 7247 7.202526 AGTATGTGTCTGATTTTGTTGTTTGG 58.797 34.615 0.00 0.00 0.00 3.28
5885 7250 3.772025 TGTCTGATTTTGTTGTTTGGGGT 59.228 39.130 0.00 0.00 0.00 4.95
5897 7262 5.998981 TGTTGTTTGGGGTAACTAGTATGTG 59.001 40.000 0.00 0.00 0.00 3.21
5916 7281 6.723298 ATGTGTTTGGTTGTCCATTCTTAA 57.277 33.333 0.00 0.00 43.91 1.85
5917 7282 6.723298 TGTGTTTGGTTGTCCATTCTTAAT 57.277 33.333 0.00 0.00 43.91 1.40
5918 7283 7.825331 TGTGTTTGGTTGTCCATTCTTAATA 57.175 32.000 0.00 0.00 43.91 0.98
5922 7287 8.519526 TGTTTGGTTGTCCATTCTTAATATGAC 58.480 33.333 0.00 0.00 43.91 3.06
5931 7296 8.930760 GTCCATTCTTAATATGACTGTATGAGC 58.069 37.037 0.00 0.00 0.00 4.26
5945 7310 7.775561 TGACTGTATGAGCTCTAACTCTATTCA 59.224 37.037 16.19 9.03 37.58 2.57
6057 7422 8.188799 TCCTTCAGTACGTTCTTTATATGACAG 58.811 37.037 0.00 0.00 0.00 3.51
6058 7423 8.188799 CCTTCAGTACGTTCTTTATATGACAGA 58.811 37.037 0.00 0.00 0.00 3.41
6059 7424 8.906636 TTCAGTACGTTCTTTATATGACAGAC 57.093 34.615 0.00 0.00 0.00 3.51
6060 7425 8.277490 TCAGTACGTTCTTTATATGACAGACT 57.723 34.615 0.00 0.00 0.00 3.24
6064 7431 9.517609 GTACGTTCTTTATATGACAGACTCATT 57.482 33.333 0.00 0.00 40.38 2.57
6100 7467 7.977789 TCATGTGTGTATAATTTGTGACACT 57.022 32.000 7.20 0.00 42.16 3.55
6102 7469 9.495572 TCATGTGTGTATAATTTGTGACACTTA 57.504 29.630 7.20 0.00 42.16 2.24
6151 7521 2.147150 GGTCTCCAAGACTTGTTGAGC 58.853 52.381 14.03 15.13 44.46 4.26
6153 7523 2.805099 GTCTCCAAGACTTGTTGAGCTG 59.195 50.000 14.03 0.00 41.88 4.24
6168 7538 2.553602 TGAGCTGAATGATTTTGTGCGT 59.446 40.909 0.00 0.00 0.00 5.24
6256 7626 3.504906 ACTAGTACAGCGTGCTTTCACTA 59.495 43.478 0.00 0.00 40.99 2.74
6289 7660 5.278022 CCAAGTTGTCTTTGCTAACTCTTCC 60.278 44.000 1.45 0.00 33.82 3.46
6320 7693 4.455533 TGTTATGTGCTAACTGGCTTCTTG 59.544 41.667 0.00 0.00 40.40 3.02
6330 7703 0.610174 TGGCTTCTTGACAGAGCGAT 59.390 50.000 0.00 0.00 0.00 4.58
6345 7718 2.226437 GAGCGATGTCACACCAATTGTT 59.774 45.455 4.43 0.00 35.67 2.83
6369 7742 1.905894 GGTTATGGTGGTTGGGCATTT 59.094 47.619 0.00 0.00 0.00 2.32
6387 7760 0.106868 TTCGAGCGGAGATAGTCCCA 60.107 55.000 0.00 0.00 43.47 4.37
6396 7769 3.367498 CGGAGATAGTCCCAATCGAATCC 60.367 52.174 0.00 0.00 43.47 3.01
6411 7784 2.168521 CGAATCCGCATACCCAGGATAT 59.831 50.000 0.00 0.00 43.39 1.63
6432 7805 2.429610 TGGGGAGCTTGTCGTAAGTATC 59.570 50.000 0.00 3.78 39.48 2.24
6443 7816 5.012239 TGTCGTAAGTATCCTACCAGTTGT 58.988 41.667 0.00 0.00 39.48 3.32
6492 7865 4.202040 TGGATATGTTATGCTTGCTTGCAC 60.202 41.667 6.36 0.00 46.33 4.57
6510 7883 2.898705 CACTATGAGGGACTTGACTGC 58.101 52.381 0.00 0.00 41.55 4.40
6529 7902 2.016604 GCAACATATCGGGCTGTCCAA 61.017 52.381 0.00 0.00 34.36 3.53
6544 7917 5.050091 GGCTGTCCAATCGTAACATGAATAG 60.050 44.000 0.00 0.00 0.00 1.73
6547 7925 5.815222 TGTCCAATCGTAACATGAATAGTGG 59.185 40.000 0.00 0.00 0.00 4.00
6548 7926 6.046593 GTCCAATCGTAACATGAATAGTGGA 58.953 40.000 0.00 1.68 0.00 4.02
6549 7927 6.706270 GTCCAATCGTAACATGAATAGTGGAT 59.294 38.462 0.00 0.00 34.20 3.41
6551 7929 6.073058 CCAATCGTAACATGAATAGTGGATGG 60.073 42.308 0.00 0.00 0.00 3.51
6552 7930 4.377021 TCGTAACATGAATAGTGGATGGC 58.623 43.478 0.00 0.00 0.00 4.40
6554 7932 4.212004 CGTAACATGAATAGTGGATGGCAG 59.788 45.833 0.00 0.00 0.00 4.85
6555 7933 3.939740 ACATGAATAGTGGATGGCAGT 57.060 42.857 0.00 0.00 0.00 4.40
6557 7935 2.715749 TGAATAGTGGATGGCAGTGG 57.284 50.000 0.00 0.00 0.00 4.00
6562 7941 5.547666 TGAATAGTGGATGGCAGTGGTATAT 59.452 40.000 0.00 0.00 0.00 0.86
6575 7954 5.696724 GCAGTGGTATATATGTGTCCAAGTC 59.303 44.000 0.00 0.00 0.00 3.01
6576 7955 6.685368 GCAGTGGTATATATGTGTCCAAGTCA 60.685 42.308 0.00 0.00 0.00 3.41
6597 7976 8.443953 AGTCAATGCTAGTTTCAAATATCCTC 57.556 34.615 0.00 0.00 0.00 3.71
6604 7983 6.914757 GCTAGTTTCAAATATCCTCATTGCAC 59.085 38.462 0.00 0.00 0.00 4.57
6612 7991 7.286087 TCAAATATCCTCATTGCACTGCTAAAT 59.714 33.333 1.98 0.00 0.00 1.40
6616 7995 6.381481 TCCTCATTGCACTGCTAAATAATG 57.619 37.500 1.98 3.90 0.00 1.90
6641 8021 9.502091 TGTTGATATAACTACAGGGATTTATGC 57.498 33.333 0.00 0.00 0.00 3.14
6642 8022 9.726438 GTTGATATAACTACAGGGATTTATGCT 57.274 33.333 0.00 0.00 0.00 3.79
6644 8024 8.251026 TGATATAACTACAGGGATTTATGCTCG 58.749 37.037 0.00 0.00 0.00 5.03
6687 8069 6.513180 TGTAACTGGTGACTTTAGAGTTCAG 58.487 40.000 9.31 9.31 35.88 3.02
6688 8070 5.871396 AACTGGTGACTTTAGAGTTCAGA 57.129 39.130 14.63 0.00 35.88 3.27
6692 8074 4.023107 TGGTGACTTTAGAGTTCAGAGTCG 60.023 45.833 0.00 0.00 39.57 4.18
6717 8099 5.488341 AGCAACGTTTATAACATCTGACCT 58.512 37.500 0.00 0.00 0.00 3.85
6719 8101 5.121768 GCAACGTTTATAACATCTGACCTGT 59.878 40.000 0.00 0.00 0.00 4.00
6764 8147 9.838339 CTTGTATATGTTCCTGTAATTTCTCCT 57.162 33.333 0.00 0.00 0.00 3.69
6770 8153 8.934023 ATGTTCCTGTAATTTCTCCTACAAAA 57.066 30.769 0.00 0.00 0.00 2.44
6771 8154 8.754991 TGTTCCTGTAATTTCTCCTACAAAAA 57.245 30.769 0.00 0.00 0.00 1.94
6772 8155 8.626526 TGTTCCTGTAATTTCTCCTACAAAAAC 58.373 33.333 0.00 0.00 0.00 2.43
6773 8156 7.429636 TCCTGTAATTTCTCCTACAAAAACG 57.570 36.000 0.00 0.00 0.00 3.60
6774 8157 6.993902 TCCTGTAATTTCTCCTACAAAAACGT 59.006 34.615 0.00 0.00 0.00 3.99
6775 8158 7.172019 TCCTGTAATTTCTCCTACAAAAACGTC 59.828 37.037 0.00 0.00 0.00 4.34
6776 8159 7.172703 CCTGTAATTTCTCCTACAAAAACGTCT 59.827 37.037 0.00 0.00 0.00 4.18
6777 8160 8.441312 TGTAATTTCTCCTACAAAAACGTCTT 57.559 30.769 0.00 0.00 0.00 3.01
6778 8161 9.545105 TGTAATTTCTCCTACAAAAACGTCTTA 57.455 29.630 0.00 0.00 0.00 2.10
6786 8169 9.769093 CTCCTACAAAAACGTCTTATATTTTGG 57.231 33.333 19.47 7.31 43.54 3.28
6787 8170 9.287373 TCCTACAAAAACGTCTTATATTTTGGT 57.713 29.630 19.47 8.32 43.54 3.67
6790 8173 8.938047 ACAAAAACGTCTTATATTTTGGTACG 57.062 30.769 19.47 0.00 43.54 3.67
6791 8174 8.016801 ACAAAAACGTCTTATATTTTGGTACGG 58.983 33.333 19.47 1.02 43.54 4.02
6792 8175 7.903995 AAAACGTCTTATATTTTGGTACGGA 57.096 32.000 0.00 0.00 33.44 4.69
6793 8176 7.529880 AAACGTCTTATATTTTGGTACGGAG 57.470 36.000 0.00 0.00 33.44 4.63
6794 8177 5.594926 ACGTCTTATATTTTGGTACGGAGG 58.405 41.667 0.00 0.00 33.44 4.30
6795 8178 5.127682 ACGTCTTATATTTTGGTACGGAGGT 59.872 40.000 0.00 0.00 33.44 3.85
6796 8179 6.321181 ACGTCTTATATTTTGGTACGGAGGTA 59.679 38.462 0.00 0.00 33.44 3.08
6797 8180 6.860023 CGTCTTATATTTTGGTACGGAGGTAG 59.140 42.308 0.00 0.00 0.00 3.18
6814 8197 5.947566 GGAGGTAGTAGAAGAAGAGTGTCTT 59.052 44.000 0.00 0.00 39.87 3.01
6852 8235 2.050691 GTTGTGCCACTTAATGCAACG 58.949 47.619 0.00 0.00 39.57 4.10
6940 8323 5.048991 GTGTAAACCGGTGAACAAGAATGAT 60.049 40.000 20.46 0.00 0.00 2.45
7013 8396 2.948315 GGCAAAAGAGCAGAATCCTAGG 59.052 50.000 0.82 0.82 35.83 3.02
7339 8729 9.985730 TTTTCTTTGAAATTCAGAAGCATATGT 57.014 25.926 4.29 0.00 0.00 2.29
7356 8746 8.696043 AGCATATGTATTACCACATCATGTTT 57.304 30.769 4.29 0.00 39.77 2.83
7358 8748 9.825972 GCATATGTATTACCACATCATGTTTAC 57.174 33.333 4.29 0.00 39.77 2.01
7360 8750 7.817418 ATGTATTACCACATCATGTTTACCC 57.183 36.000 0.00 0.00 33.89 3.69
7363 8753 1.631388 ACCACATCATGTTTACCCGGA 59.369 47.619 0.73 0.00 0.00 5.14
7366 8756 2.618241 CACATCATGTTTACCCGGATGG 59.382 50.000 0.73 0.00 39.63 3.51
7394 8796 0.456824 CACAGATCCTCGTGTGTCCG 60.457 60.000 4.98 0.00 39.42 4.79
7403 8805 0.942410 TCGTGTGTCCGTAGCTTTGC 60.942 55.000 0.00 0.00 0.00 3.68
7414 8821 0.390340 TAGCTTTGCTCTGGTCAGCG 60.390 55.000 0.00 0.00 42.92 5.18
7420 8827 2.505777 CTCTGGTCAGCGAGCACG 60.506 66.667 0.00 0.00 35.04 5.34
7447 8854 6.902224 AGTGTTTTTGATAGTTGTTTTGCC 57.098 33.333 0.00 0.00 0.00 4.52
7487 8894 6.707440 TGGTCGATATATTTGGTTTGCATT 57.293 33.333 0.00 0.00 0.00 3.56
7546 8954 8.421249 AATGTAATGTTTCATTTTCTCAGGGA 57.579 30.769 0.37 0.00 31.35 4.20
7640 9054 5.754406 TGTTTGATTGCTTCACAGGAAAATG 59.246 36.000 0.00 0.00 33.45 2.32
7655 9069 8.306038 CACAGGAAAATGAAATGATTCTTACCA 58.694 33.333 0.00 0.00 36.48 3.25
7698 9112 9.985318 CAAATGATTTTGTGAAGTTGCTTTTTA 57.015 25.926 0.00 0.00 37.92 1.52
7700 9114 7.769272 TGATTTTGTGAAGTTGCTTTTTAGG 57.231 32.000 0.00 0.00 0.00 2.69
7701 9115 6.760770 TGATTTTGTGAAGTTGCTTTTTAGGG 59.239 34.615 0.00 0.00 0.00 3.53
7702 9116 5.923733 TTTGTGAAGTTGCTTTTTAGGGA 57.076 34.783 0.00 0.00 0.00 4.20
7703 9117 5.923733 TTGTGAAGTTGCTTTTTAGGGAA 57.076 34.783 0.00 0.00 0.00 3.97
7704 9118 6.478512 TTGTGAAGTTGCTTTTTAGGGAAT 57.521 33.333 0.00 0.00 0.00 3.01
7705 9119 5.841810 TGTGAAGTTGCTTTTTAGGGAATG 58.158 37.500 0.00 0.00 0.00 2.67
7706 9120 5.596361 TGTGAAGTTGCTTTTTAGGGAATGA 59.404 36.000 0.00 0.00 0.00 2.57
7707 9121 6.097554 TGTGAAGTTGCTTTTTAGGGAATGAA 59.902 34.615 0.00 0.00 0.00 2.57
7708 9122 6.983890 GTGAAGTTGCTTTTTAGGGAATGAAA 59.016 34.615 0.00 0.00 0.00 2.69
7709 9123 7.494298 GTGAAGTTGCTTTTTAGGGAATGAAAA 59.506 33.333 0.00 0.00 0.00 2.29
7710 9124 8.043710 TGAAGTTGCTTTTTAGGGAATGAAAAA 58.956 29.630 0.00 0.00 34.32 1.94
7782 9479 5.723860 AATCCTTAGAATCAAAGAGGCCT 57.276 39.130 3.86 3.86 0.00 5.19
7785 9482 5.501156 TCCTTAGAATCAAAGAGGCCTTTC 58.499 41.667 6.77 5.47 40.42 2.62
7821 9518 2.519377 ACACCGAGTTTCACGAATCA 57.481 45.000 0.00 0.00 0.00 2.57
7827 9524 3.309388 CGAGTTTCACGAATCAGACACT 58.691 45.455 0.00 0.00 0.00 3.55
7828 9525 4.473199 CGAGTTTCACGAATCAGACACTA 58.527 43.478 0.00 0.00 0.00 2.74
7840 9562 6.967767 CGAATCAGACACTAATCGTTACTCTT 59.032 38.462 0.00 0.00 0.00 2.85
7846 9568 6.153000 AGACACTAATCGTTACTCTTGATGGT 59.847 38.462 0.00 0.00 0.00 3.55
7849 9571 6.980978 CACTAATCGTTACTCTTGATGGTGAT 59.019 38.462 0.00 0.00 32.93 3.06
7854 9576 4.025396 CGTTACTCTTGATGGTGATGATGC 60.025 45.833 0.00 0.00 0.00 3.91
7870 9592 6.039047 GTGATGATGCTATTGATTGTGAACCT 59.961 38.462 0.00 0.00 0.00 3.50
7930 9652 4.116961 TCACGGAAAGCGGAACTATTATG 58.883 43.478 0.00 0.00 0.00 1.90
7953 9675 7.528481 TGCAATACTTACCTTATGTAACACG 57.472 36.000 0.00 0.00 34.50 4.49
7954 9676 7.321908 TGCAATACTTACCTTATGTAACACGA 58.678 34.615 0.00 0.00 34.50 4.35
7956 9678 9.467258 GCAATACTTACCTTATGTAACACGATA 57.533 33.333 0.00 0.00 34.50 2.92
8004 9726 6.578172 GCAAAATCAATAACAACAAATGCACC 59.422 34.615 0.00 0.00 0.00 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.016444 AGGATTAATGCGAACACCAATGT 58.984 39.130 0.88 0.00 42.46 2.71
1 2 4.096231 TCAGGATTAATGCGAACACCAATG 59.904 41.667 0.88 0.00 0.00 2.82
2 3 4.269183 TCAGGATTAATGCGAACACCAAT 58.731 39.130 0.88 0.00 0.00 3.16
3 4 3.680490 TCAGGATTAATGCGAACACCAA 58.320 40.909 0.88 0.00 0.00 3.67
4 5 3.342377 TCAGGATTAATGCGAACACCA 57.658 42.857 0.88 0.00 0.00 4.17
5 6 4.900635 ATTCAGGATTAATGCGAACACC 57.099 40.909 13.31 0.00 0.00 4.16
6 7 8.856490 AATAAATTCAGGATTAATGCGAACAC 57.144 30.769 13.31 0.00 0.00 3.32
7 8 9.515020 GAAATAAATTCAGGATTAATGCGAACA 57.485 29.630 13.31 5.96 37.99 3.18
8 9 9.515020 TGAAATAAATTCAGGATTAATGCGAAC 57.485 29.630 13.31 4.13 43.08 3.95
22 23 4.094294 CGTCGAAGGCCTGAAATAAATTCA 59.906 41.667 5.69 0.00 45.71 2.57
23 24 4.331717 TCGTCGAAGGCCTGAAATAAATTC 59.668 41.667 5.69 0.00 38.60 2.17
24 25 4.258543 TCGTCGAAGGCCTGAAATAAATT 58.741 39.130 5.69 0.00 0.00 1.82
25 26 3.869065 TCGTCGAAGGCCTGAAATAAAT 58.131 40.909 5.69 0.00 0.00 1.40
26 27 3.322211 TCGTCGAAGGCCTGAAATAAA 57.678 42.857 5.69 0.00 0.00 1.40
27 28 3.194861 CATCGTCGAAGGCCTGAAATAA 58.805 45.455 5.69 0.00 0.00 1.40
28 29 2.821546 CATCGTCGAAGGCCTGAAATA 58.178 47.619 5.69 0.00 0.00 1.40
29 30 1.656652 CATCGTCGAAGGCCTGAAAT 58.343 50.000 5.69 0.00 0.00 2.17
30 31 1.019278 GCATCGTCGAAGGCCTGAAA 61.019 55.000 5.69 0.00 0.00 2.69
31 32 1.447838 GCATCGTCGAAGGCCTGAA 60.448 57.895 5.69 0.00 0.00 3.02
32 33 2.184322 GCATCGTCGAAGGCCTGA 59.816 61.111 5.69 0.00 0.00 3.86
33 34 1.880340 GAGCATCGTCGAAGGCCTG 60.880 63.158 5.69 0.00 0.00 4.85
34 35 2.496817 GAGCATCGTCGAAGGCCT 59.503 61.111 15.94 0.00 0.00 5.19
45 46 0.532573 TCTCCCACTGAACGAGCATC 59.467 55.000 0.00 0.00 0.00 3.91
46 47 0.976641 TTCTCCCACTGAACGAGCAT 59.023 50.000 0.00 0.00 0.00 3.79
47 48 0.318441 CTTCTCCCACTGAACGAGCA 59.682 55.000 0.00 0.00 0.00 4.26
48 49 0.603569 TCTTCTCCCACTGAACGAGC 59.396 55.000 0.00 0.00 0.00 5.03
49 50 1.401670 CGTCTTCTCCCACTGAACGAG 60.402 57.143 0.00 0.00 0.00 4.18
50 51 0.596577 CGTCTTCTCCCACTGAACGA 59.403 55.000 0.00 0.00 0.00 3.85
51 52 0.314302 ACGTCTTCTCCCACTGAACG 59.686 55.000 0.00 0.00 0.00 3.95
52 53 2.405172 GAACGTCTTCTCCCACTGAAC 58.595 52.381 0.00 0.00 0.00 3.18
53 54 1.343465 GGAACGTCTTCTCCCACTGAA 59.657 52.381 0.00 0.00 0.00 3.02
54 55 0.966920 GGAACGTCTTCTCCCACTGA 59.033 55.000 0.00 0.00 0.00 3.41
55 56 3.516578 GGAACGTCTTCTCCCACTG 57.483 57.895 0.00 0.00 0.00 3.66
73 74 3.678717 AACATCTCGCGGTCGACGG 62.679 63.158 17.98 17.98 44.51 4.79
75 76 0.525668 ATGAACATCTCGCGGTCGAC 60.526 55.000 7.13 7.13 40.21 4.20
76 77 0.525455 CATGAACATCTCGCGGTCGA 60.525 55.000 6.13 0.50 43.28 4.20
77 78 1.482621 CCATGAACATCTCGCGGTCG 61.483 60.000 6.13 0.00 0.00 4.79
78 79 0.460284 ACCATGAACATCTCGCGGTC 60.460 55.000 6.13 0.00 0.00 4.79
79 80 0.740868 CACCATGAACATCTCGCGGT 60.741 55.000 6.13 0.00 32.69 5.68
80 81 0.460109 TCACCATGAACATCTCGCGG 60.460 55.000 6.13 0.00 0.00 6.46
81 82 0.647410 GTCACCATGAACATCTCGCG 59.353 55.000 0.00 0.00 0.00 5.87
82 83 2.015736 AGTCACCATGAACATCTCGC 57.984 50.000 0.00 0.00 0.00 5.03
83 84 3.748048 ACAAAGTCACCATGAACATCTCG 59.252 43.478 0.00 0.00 0.00 4.04
84 85 6.801539 TTACAAAGTCACCATGAACATCTC 57.198 37.500 0.00 0.00 0.00 2.75
85 86 7.581213 TTTTACAAAGTCACCATGAACATCT 57.419 32.000 0.00 0.00 0.00 2.90
86 87 8.299570 AGATTTTACAAAGTCACCATGAACATC 58.700 33.333 0.00 0.00 0.00 3.06
87 88 8.181904 AGATTTTACAAAGTCACCATGAACAT 57.818 30.769 0.00 0.00 0.00 2.71
88 89 7.284261 TGAGATTTTACAAAGTCACCATGAACA 59.716 33.333 0.00 0.00 0.00 3.18
89 90 7.648142 TGAGATTTTACAAAGTCACCATGAAC 58.352 34.615 0.00 0.00 0.00 3.18
90 91 7.815840 TGAGATTTTACAAAGTCACCATGAA 57.184 32.000 0.00 0.00 0.00 2.57
91 92 7.719193 TCTTGAGATTTTACAAAGTCACCATGA 59.281 33.333 0.00 3.52 0.00 3.07
92 93 7.874940 TCTTGAGATTTTACAAAGTCACCATG 58.125 34.615 0.86 0.00 0.00 3.66
93 94 8.641498 ATCTTGAGATTTTACAAAGTCACCAT 57.359 30.769 0.86 0.00 0.00 3.55
94 95 8.999431 GTATCTTGAGATTTTACAAAGTCACCA 58.001 33.333 0.00 0.00 36.05 4.17
95 96 9.220767 AGTATCTTGAGATTTTACAAAGTCACC 57.779 33.333 0.00 0.00 36.05 4.02
101 102 8.826710 CGGCATAGTATCTTGAGATTTTACAAA 58.173 33.333 0.00 0.00 36.05 2.83
102 103 7.441157 CCGGCATAGTATCTTGAGATTTTACAA 59.559 37.037 0.00 0.00 36.05 2.41
103 104 6.929049 CCGGCATAGTATCTTGAGATTTTACA 59.071 38.462 0.00 0.00 36.05 2.41
104 105 6.929606 ACCGGCATAGTATCTTGAGATTTTAC 59.070 38.462 0.00 0.00 36.05 2.01
105 106 7.062749 ACCGGCATAGTATCTTGAGATTTTA 57.937 36.000 0.00 0.00 36.05 1.52
106 107 5.930135 ACCGGCATAGTATCTTGAGATTTT 58.070 37.500 0.00 0.00 36.05 1.82
107 108 5.552870 ACCGGCATAGTATCTTGAGATTT 57.447 39.130 0.00 0.00 36.05 2.17
108 109 5.070446 TGAACCGGCATAGTATCTTGAGATT 59.930 40.000 0.00 0.00 36.05 2.40
109 110 4.588951 TGAACCGGCATAGTATCTTGAGAT 59.411 41.667 0.00 0.00 38.51 2.75
110 111 3.958147 TGAACCGGCATAGTATCTTGAGA 59.042 43.478 0.00 0.00 0.00 3.27
111 112 4.202161 ACTGAACCGGCATAGTATCTTGAG 60.202 45.833 0.00 0.00 0.00 3.02
112 113 3.704566 ACTGAACCGGCATAGTATCTTGA 59.295 43.478 0.00 0.00 0.00 3.02
113 114 4.051922 GACTGAACCGGCATAGTATCTTG 58.948 47.826 0.00 0.00 0.00 3.02
114 115 3.961408 AGACTGAACCGGCATAGTATCTT 59.039 43.478 0.00 0.00 0.00 2.40
115 116 3.567397 AGACTGAACCGGCATAGTATCT 58.433 45.455 0.00 0.00 0.00 1.98
116 117 4.202121 TGAAGACTGAACCGGCATAGTATC 60.202 45.833 0.00 6.19 0.00 2.24
117 118 3.704566 TGAAGACTGAACCGGCATAGTAT 59.295 43.478 0.00 0.00 0.00 2.12
118 119 3.093814 TGAAGACTGAACCGGCATAGTA 58.906 45.455 0.00 0.00 0.00 1.82
119 120 1.899814 TGAAGACTGAACCGGCATAGT 59.100 47.619 0.00 2.44 0.00 2.12
120 121 2.166459 TCTGAAGACTGAACCGGCATAG 59.834 50.000 0.00 0.00 0.00 2.23
121 122 2.166459 CTCTGAAGACTGAACCGGCATA 59.834 50.000 0.00 0.00 0.00 3.14
122 123 0.976641 TCTGAAGACTGAACCGGCAT 59.023 50.000 0.00 0.00 0.00 4.40
123 124 0.318441 CTCTGAAGACTGAACCGGCA 59.682 55.000 0.00 0.00 0.00 5.69
124 125 0.390472 CCTCTGAAGACTGAACCGGC 60.390 60.000 0.00 0.00 0.00 6.13
125 126 0.969894 ACCTCTGAAGACTGAACCGG 59.030 55.000 0.00 0.00 0.00 5.28
126 127 1.337260 CCACCTCTGAAGACTGAACCG 60.337 57.143 0.00 0.00 0.00 4.44
127 128 1.694696 ACCACCTCTGAAGACTGAACC 59.305 52.381 0.00 0.00 0.00 3.62
128 129 2.365617 TGACCACCTCTGAAGACTGAAC 59.634 50.000 0.00 0.00 0.00 3.18
129 130 2.677914 TGACCACCTCTGAAGACTGAA 58.322 47.619 0.00 0.00 0.00 3.02
130 131 2.381752 TGACCACCTCTGAAGACTGA 57.618 50.000 0.00 0.00 0.00 3.41
131 132 3.131933 CCTATGACCACCTCTGAAGACTG 59.868 52.174 0.00 0.00 0.00 3.51
132 133 3.370104 CCTATGACCACCTCTGAAGACT 58.630 50.000 0.00 0.00 0.00 3.24
133 134 2.432510 CCCTATGACCACCTCTGAAGAC 59.567 54.545 0.00 0.00 0.00 3.01
134 135 2.314852 TCCCTATGACCACCTCTGAAGA 59.685 50.000 0.00 0.00 0.00 2.87
135 136 2.752030 TCCCTATGACCACCTCTGAAG 58.248 52.381 0.00 0.00 0.00 3.02
136 137 2.940514 TCCCTATGACCACCTCTGAA 57.059 50.000 0.00 0.00 0.00 3.02
137 138 3.755483 GCTATCCCTATGACCACCTCTGA 60.755 52.174 0.00 0.00 0.00 3.27
138 139 2.564947 GCTATCCCTATGACCACCTCTG 59.435 54.545 0.00 0.00 0.00 3.35
139 140 2.819726 CGCTATCCCTATGACCACCTCT 60.820 54.545 0.00 0.00 0.00 3.69
140 141 1.546476 CGCTATCCCTATGACCACCTC 59.454 57.143 0.00 0.00 0.00 3.85
141 142 1.133136 ACGCTATCCCTATGACCACCT 60.133 52.381 0.00 0.00 0.00 4.00
142 143 1.339097 ACGCTATCCCTATGACCACC 58.661 55.000 0.00 0.00 0.00 4.61
143 144 3.676324 GCATACGCTATCCCTATGACCAC 60.676 52.174 0.00 0.00 34.30 4.16
144 145 2.496070 GCATACGCTATCCCTATGACCA 59.504 50.000 0.00 0.00 34.30 4.02
145 146 2.479730 CGCATACGCTATCCCTATGACC 60.480 54.545 0.00 0.00 35.30 4.02
146 147 2.163815 ACGCATACGCTATCCCTATGAC 59.836 50.000 0.00 0.00 45.53 3.06
147 148 2.163613 CACGCATACGCTATCCCTATGA 59.836 50.000 0.00 0.00 45.53 2.15
148 149 2.530177 CACGCATACGCTATCCCTATG 58.470 52.381 0.00 0.00 45.53 2.23
149 150 1.135083 GCACGCATACGCTATCCCTAT 60.135 52.381 0.00 0.00 45.53 2.57
150 151 0.242825 GCACGCATACGCTATCCCTA 59.757 55.000 0.00 0.00 45.53 3.53
151 152 1.006102 GCACGCATACGCTATCCCT 60.006 57.895 0.00 0.00 45.53 4.20
152 153 2.372690 CGCACGCATACGCTATCCC 61.373 63.158 0.00 0.00 45.53 3.85
153 154 1.606350 GACGCACGCATACGCTATCC 61.606 60.000 0.00 0.00 45.53 2.59
154 155 1.606350 GGACGCACGCATACGCTATC 61.606 60.000 0.00 0.00 45.53 2.08
155 156 1.660575 GGACGCACGCATACGCTAT 60.661 57.895 0.00 0.00 45.53 2.97
156 157 2.278336 GGACGCACGCATACGCTA 60.278 61.111 0.00 0.00 45.53 4.26
160 161 1.418342 ATGAACGGACGCACGCATAC 61.418 55.000 0.00 0.00 37.37 2.39
161 162 0.100861 TATGAACGGACGCACGCATA 59.899 50.000 0.00 0.00 37.37 3.14
162 163 1.145759 CTATGAACGGACGCACGCAT 61.146 55.000 0.00 0.00 37.37 4.73
163 164 1.803922 CTATGAACGGACGCACGCA 60.804 57.895 0.00 0.00 37.37 5.24
164 165 2.514013 CCTATGAACGGACGCACGC 61.514 63.158 0.00 0.00 37.37 5.34
165 166 1.876714 CCCTATGAACGGACGCACG 60.877 63.158 0.00 0.00 40.31 5.34
166 167 1.520787 CCCCTATGAACGGACGCAC 60.521 63.158 0.00 0.00 0.00 5.34
167 168 1.985662 ACCCCTATGAACGGACGCA 60.986 57.895 0.00 0.00 0.00 5.24
168 169 1.520787 CACCCCTATGAACGGACGC 60.521 63.158 0.00 0.00 0.00 5.19
169 170 0.533491 TTCACCCCTATGAACGGACG 59.467 55.000 0.00 0.00 33.62 4.79
170 171 2.093128 ACATTCACCCCTATGAACGGAC 60.093 50.000 0.00 0.00 41.29 4.79
171 172 2.193127 ACATTCACCCCTATGAACGGA 58.807 47.619 0.00 0.00 41.29 4.69
172 173 2.710096 ACATTCACCCCTATGAACGG 57.290 50.000 0.00 0.00 41.29 4.44
173 174 4.511454 CACATACATTCACCCCTATGAACG 59.489 45.833 0.00 0.00 41.29 3.95
174 175 5.680619 TCACATACATTCACCCCTATGAAC 58.319 41.667 0.00 0.00 41.29 3.18
175 176 5.687441 GCTCACATACATTCACCCCTATGAA 60.687 44.000 0.00 0.00 42.62 2.57
176 177 4.202357 GCTCACATACATTCACCCCTATGA 60.202 45.833 0.00 0.00 0.00 2.15
177 178 4.067896 GCTCACATACATTCACCCCTATG 58.932 47.826 0.00 0.00 0.00 2.23
178 179 3.244215 CGCTCACATACATTCACCCCTAT 60.244 47.826 0.00 0.00 0.00 2.57
179 180 2.102420 CGCTCACATACATTCACCCCTA 59.898 50.000 0.00 0.00 0.00 3.53
180 181 1.134401 CGCTCACATACATTCACCCCT 60.134 52.381 0.00 0.00 0.00 4.79
181 182 1.134521 TCGCTCACATACATTCACCCC 60.135 52.381 0.00 0.00 0.00 4.95
182 183 1.933853 GTCGCTCACATACATTCACCC 59.066 52.381 0.00 0.00 0.00 4.61
183 184 2.616960 TGTCGCTCACATACATTCACC 58.383 47.619 0.00 0.00 0.00 4.02
184 185 3.060940 CGATGTCGCTCACATACATTCAC 60.061 47.826 0.00 0.00 46.53 3.18
185 186 3.115554 CGATGTCGCTCACATACATTCA 58.884 45.455 0.00 0.00 46.53 2.57
186 187 3.116300 ACGATGTCGCTCACATACATTC 58.884 45.455 1.77 0.00 46.53 2.67
187 188 3.165058 ACGATGTCGCTCACATACATT 57.835 42.857 1.77 0.00 46.53 2.71
188 189 2.860136 CAACGATGTCGCTCACATACAT 59.140 45.455 1.77 0.00 46.53 2.29
189 190 2.258755 CAACGATGTCGCTCACATACA 58.741 47.619 1.77 0.00 46.53 2.29
190 191 2.028045 CACAACGATGTCGCTCACATAC 59.972 50.000 1.77 0.00 46.53 2.39
191 192 2.258755 CACAACGATGTCGCTCACATA 58.741 47.619 1.77 0.00 46.53 2.29
193 194 0.249280 ACACAACGATGTCGCTCACA 60.249 50.000 1.77 0.00 44.43 3.58
194 195 0.859232 AACACAACGATGTCGCTCAC 59.141 50.000 1.77 0.00 44.43 3.51
195 196 1.577468 AAACACAACGATGTCGCTCA 58.423 45.000 1.77 0.00 44.43 4.26
196 197 2.033236 TCAAAACACAACGATGTCGCTC 60.033 45.455 1.77 0.00 44.43 5.03
197 198 1.937223 TCAAAACACAACGATGTCGCT 59.063 42.857 1.77 0.00 44.43 4.93
198 199 2.376915 TCAAAACACAACGATGTCGC 57.623 45.000 1.77 0.00 44.43 5.19
199 200 6.961358 TTTTATCAAAACACAACGATGTCG 57.039 33.333 0.00 0.11 46.33 4.35
222 223 6.573664 TGCACTATAAGCACATGTCTTTTT 57.426 33.333 13.40 6.96 37.02 1.94
237 238 1.076850 TCCCCGACCGTGCACTATA 60.077 57.895 16.19 0.00 0.00 1.31
240 241 4.988716 TCTCCCCGACCGTGCACT 62.989 66.667 16.19 0.00 0.00 4.40
249 250 1.873698 CACGTTTTTCTTCTCCCCGA 58.126 50.000 0.00 0.00 0.00 5.14
279 281 4.303993 ACGACCCGTTTCCCGTGG 62.304 66.667 0.00 0.00 36.35 4.94
280 282 3.039588 CACGACCCGTTTCCCGTG 61.040 66.667 0.00 0.00 44.66 4.94
286 288 0.179051 TAAAGCCACACGACCCGTTT 60.179 50.000 0.00 0.00 38.32 3.60
287 289 0.881600 GTAAAGCCACACGACCCGTT 60.882 55.000 0.00 0.00 38.32 4.44
288 290 1.301165 GTAAAGCCACACGACCCGT 60.301 57.895 0.00 0.00 42.36 5.28
289 291 2.377310 CGTAAAGCCACACGACCCG 61.377 63.158 0.00 0.00 40.56 5.28
290 292 2.030958 CCGTAAAGCCACACGACCC 61.031 63.158 3.41 0.00 40.56 4.46
291 293 0.600782 TTCCGTAAAGCCACACGACC 60.601 55.000 3.41 0.00 40.56 4.79
292 294 0.509929 GTTCCGTAAAGCCACACGAC 59.490 55.000 3.41 0.00 40.56 4.34
293 295 0.600782 GGTTCCGTAAAGCCACACGA 60.601 55.000 3.41 0.00 40.56 4.35
294 296 1.864176 GGTTCCGTAAAGCCACACG 59.136 57.895 0.00 0.00 37.89 4.49
295 297 0.881600 ACGGTTCCGTAAAGCCACAC 60.882 55.000 15.43 0.00 41.13 3.82
296 298 0.600782 GACGGTTCCGTAAAGCCACA 60.601 55.000 16.91 0.00 43.08 4.17
303 305 0.467384 TGTTTGGGACGGTTCCGTAA 59.533 50.000 16.91 5.49 43.94 3.18
314 316 1.306296 GGGCTGGCTATGTTTGGGA 59.694 57.895 0.00 0.00 0.00 4.37
315 317 0.397535 ATGGGCTGGCTATGTTTGGG 60.398 55.000 0.00 0.00 0.00 4.12
780 782 3.151022 GAGGTGGGAGGCGGAGAG 61.151 72.222 0.00 0.00 0.00 3.20
790 792 3.450115 GGTCGACGAGGAGGTGGG 61.450 72.222 9.92 0.00 0.00 4.61
1445 1447 3.991367 ACAACGAACAAGAGAACCCTAG 58.009 45.455 0.00 0.00 0.00 3.02
1449 1451 6.134061 GTGATTAACAACGAACAAGAGAACC 58.866 40.000 0.00 0.00 0.00 3.62
1478 1480 2.427232 GCACTTGCACAATGTGATGT 57.573 45.000 18.66 8.86 41.59 3.06
1495 1497 6.513806 ACTGCATAAGTTTTGTATCATGCA 57.486 33.333 6.84 6.84 44.60 3.96
1509 1511 6.352516 AGGTCCATAAGAGAAACTGCATAAG 58.647 40.000 0.00 0.00 0.00 1.73
1589 1591 5.125356 CAATATGATCAACCAGGCTACACA 58.875 41.667 0.00 0.00 0.00 3.72
1597 1599 5.195940 ACCTTCCACAATATGATCAACCAG 58.804 41.667 0.00 0.00 0.00 4.00
1654 2401 9.535878 GTCAAAATGTACAATGGGAAGTTTTTA 57.464 29.630 0.00 0.00 0.00 1.52
1747 2496 5.011533 ACATGATGACCTGATTCCTAGCTAC 59.988 44.000 0.00 0.00 0.00 3.58
1760 2509 2.947652 GCAATGTAGCACATGATGACCT 59.052 45.455 0.00 0.00 37.97 3.85
1799 2548 5.353956 TCACATGGAATCAACATCCTAAACG 59.646 40.000 0.00 0.00 37.85 3.60
1848 2597 5.057149 CCCTAACACTGCAGTAACATATCC 58.943 45.833 21.20 0.00 0.00 2.59
1849 2598 5.671493 ACCCTAACACTGCAGTAACATATC 58.329 41.667 21.20 0.00 0.00 1.63
1908 2657 3.202906 GGCATGGTCGTTCAGCTAATTA 58.797 45.455 0.00 0.00 0.00 1.40
1918 2667 3.235157 CATGAAAATGGCATGGTCGTT 57.765 42.857 0.00 0.00 39.48 3.85
1925 2674 3.376636 TGATGGTCCATGAAAATGGCAT 58.623 40.909 9.76 0.00 41.43 4.40
1962 2711 5.349543 GGATCACAATGGCATGAAGAAAAAC 59.650 40.000 0.00 0.00 0.00 2.43
1998 2749 3.764885 AAAATTCCATACAGCGAGTGC 57.235 42.857 0.00 0.00 43.24 4.40
2078 3075 8.029642 ACGATAGATTAGGAAACAACAACTTG 57.970 34.615 0.00 0.00 41.38 3.16
2087 3085 8.192110 AGACAAGAGAACGATAGATTAGGAAAC 58.808 37.037 0.00 0.00 41.38 2.78
2113 3111 3.085533 GAGTGTCTAGAGTTCTGCCTCA 58.914 50.000 0.00 0.00 33.75 3.86
2117 3115 3.189702 ACGAAGAGTGTCTAGAGTTCTGC 59.810 47.826 0.00 0.00 0.00 4.26
2126 3124 5.583457 TGATACATCGAACGAAGAGTGTCTA 59.417 40.000 17.15 8.10 0.00 2.59
2230 3228 0.871722 CATCAAAGGCCGAAACGACA 59.128 50.000 0.00 0.00 0.00 4.35
2247 3245 2.881111 ATATCAGCATCTGCAGGCAT 57.119 45.000 15.13 3.64 45.16 4.40
2425 3423 3.753272 TGAGTTGCCAATCTTTAGTGAGC 59.247 43.478 0.00 0.00 0.00 4.26
2457 3455 6.655078 ACTATTTTGTGCAACTTCCAGAAT 57.345 33.333 0.00 0.00 38.04 2.40
2482 3480 4.613437 ACTATTCTGGGCAACATCCATTT 58.387 39.130 0.00 0.00 39.74 2.32
2489 3487 3.055385 GTCCACTACTATTCTGGGCAACA 60.055 47.826 0.00 0.00 39.74 3.33
2529 3527 6.739112 TCTCGATGTCTACATAATCAACAGG 58.261 40.000 0.00 0.00 36.57 4.00
2618 3616 1.909700 CAAGAGCCCAGGTAGCAAAA 58.090 50.000 0.00 0.00 0.00 2.44
2657 3655 1.460504 TACGAGTGCGGTTCAGATCT 58.539 50.000 0.00 0.00 43.17 2.75
2696 3694 1.151221 AGTTGTCACAGCATGCCCA 59.849 52.632 15.66 0.54 42.53 5.36
2864 3862 0.179004 TTTGGGCCAACGACATGTCT 60.179 50.000 20.79 8.01 0.00 3.41
2955 3953 6.887376 TGCAATACTACGAAGAAGATGAAC 57.113 37.500 0.00 0.00 0.00 3.18
2993 3991 7.400339 TCCTTCATACCACTCTGACTATTTTCT 59.600 37.037 0.00 0.00 0.00 2.52
3176 4174 0.814010 ATGGCCCGTAATCGTCAAGC 60.814 55.000 0.00 0.00 35.01 4.01
3182 4180 0.944311 CGGAAGATGGCCCGTAATCG 60.944 60.000 0.00 0.00 40.78 3.34
3230 4228 5.009010 GTCTCCAAGAATTTCAGAAAGCACA 59.991 40.000 1.28 0.00 0.00 4.57
3318 4316 3.843426 TTTTGCGGTAAAAATTGCACG 57.157 38.095 1.35 0.00 37.01 5.34
3356 4354 6.476706 GTGATGTTAATAAATCTGCAAAGGGC 59.523 38.462 0.00 0.00 45.13 5.19
3447 4445 7.602265 ACATTGCCATTCCAGTAACAATTTAAC 59.398 33.333 0.00 0.00 0.00 2.01
3449 4447 7.039434 TGACATTGCCATTCCAGTAACAATTTA 60.039 33.333 0.00 0.00 0.00 1.40
3521 4521 5.233689 GCCCAATACTTACGAGTTATGACAC 59.766 44.000 0.00 0.00 37.33 3.67
3638 4638 1.499007 CCCCACATGGCTACCCTAAAT 59.501 52.381 0.00 0.00 0.00 1.40
3652 4652 3.603965 ACAAACAAGGATAACCCCACA 57.396 42.857 0.00 0.00 36.73 4.17
3653 4653 5.105513 CCATAACAAACAAGGATAACCCCAC 60.106 44.000 0.00 0.00 36.73 4.61
3685 4687 5.577835 TGCCAATCAAAACATATAAGACGC 58.422 37.500 0.00 0.00 0.00 5.19
3687 4689 5.979517 GGCTGCCAATCAAAACATATAAGAC 59.020 40.000 15.17 0.00 0.00 3.01
3690 4692 6.543430 AAGGCTGCCAATCAAAACATATAA 57.457 33.333 22.65 0.00 0.00 0.98
3739 4741 9.656040 AATAAGAAATGTTGCTGCAATCAAATA 57.344 25.926 19.11 6.97 0.00 1.40
3786 4788 7.448469 AGGTAAAATACAAGTGCAAGACTGAAT 59.552 33.333 0.00 0.00 34.02 2.57
3838 4840 3.431856 CACTTGCACATCCATCAAATCG 58.568 45.455 0.00 0.00 0.00 3.34
3846 4848 3.719268 ACTTATCCACTTGCACATCCA 57.281 42.857 0.00 0.00 0.00 3.41
3904 4906 2.535836 AGGACAGTAGGAGGGAGAAC 57.464 55.000 0.00 0.00 0.00 3.01
3939 4983 9.630098 GATAATCAACTTGATTCTGCAAAAGAA 57.370 29.630 18.39 0.56 43.03 2.52
3940 4984 8.795513 TGATAATCAACTTGATTCTGCAAAAGA 58.204 29.630 18.39 1.20 43.03 2.52
3941 4985 8.975410 TGATAATCAACTTGATTCTGCAAAAG 57.025 30.769 18.39 0.00 43.03 2.27
4076 5120 4.991056 TGGTTCAAGAGAGAGAAAATCGTG 59.009 41.667 0.00 0.00 0.00 4.35
4112 5156 6.697455 GGGCTCTTTTTGTTCAAGTTCTTTAG 59.303 38.462 0.00 0.00 0.00 1.85
4198 5242 4.363991 AACATCCTCAGAACAAAGCTCT 57.636 40.909 0.00 0.00 0.00 4.09
4219 5263 3.932710 CAGCTATTCTCTTTTGGCACGTA 59.067 43.478 0.00 0.00 0.00 3.57
4366 5410 2.568956 AGCAGCAGTAGAAGAACCATCA 59.431 45.455 0.00 0.00 0.00 3.07
4371 5415 2.531206 CGGTAGCAGCAGTAGAAGAAC 58.469 52.381 0.00 0.00 0.00 3.01
4391 5435 3.961576 GTACACTACGGGGATCAGC 57.038 57.895 0.00 0.00 0.00 4.26
4528 5572 2.254546 TTCGTCCAGTTGCACATTCT 57.745 45.000 0.00 0.00 0.00 2.40
4592 5636 6.993079 TCTCAGAGCAGAGTACATTTAACAA 58.007 36.000 0.00 0.00 36.97 2.83
4604 5648 7.548427 TCTTGTATTTTGATTCTCAGAGCAGAG 59.452 37.037 0.00 0.00 36.97 3.35
4617 5661 8.137437 CACCAGAAACACTTCTTGTATTTTGAT 58.863 33.333 0.00 0.00 40.05 2.57
4753 5797 4.038271 AGCATCTCTTGAAATCCCACAA 57.962 40.909 0.00 0.00 0.00 3.33
4772 5816 1.678101 GCACCCATCATCCTTACAAGC 59.322 52.381 0.00 0.00 0.00 4.01
4789 5833 0.670162 AGCCACTGTGTTCAATGCAC 59.330 50.000 7.08 0.00 37.37 4.57
4801 5845 2.149578 CTTCCAGTTTCAGAGCCACTG 58.850 52.381 2.58 2.58 46.97 3.66
4916 5960 5.212532 GATGACTTGTCATCAGCTATCCT 57.787 43.478 28.53 3.07 44.26 3.24
5017 6061 4.033817 CGAGCTTGAGGAAAATCTGATGAC 59.966 45.833 0.00 0.00 0.00 3.06
5104 6149 8.496751 GTTAAGCTTTTAAAGGAGCGATATAGG 58.503 37.037 3.20 0.00 43.53 2.57
5105 6152 9.262358 AGTTAAGCTTTTAAAGGAGCGATATAG 57.738 33.333 3.20 0.00 43.53 1.31
5107 6154 8.507524 AAGTTAAGCTTTTAAAGGAGCGATAT 57.492 30.769 3.20 0.00 43.53 1.63
5145 6201 1.552578 ATGGCATCAGCAGAAAAGCA 58.447 45.000 0.00 0.00 44.61 3.91
5149 6205 3.612241 CGTTTGAATGGCATCAGCAGAAA 60.612 43.478 0.00 0.00 44.61 2.52
5150 6206 2.095110 CGTTTGAATGGCATCAGCAGAA 60.095 45.455 0.00 0.00 44.61 3.02
5195 6251 5.634859 GTCTGCATAAACCATTTGAAACCAG 59.365 40.000 0.00 0.00 0.00 4.00
5248 6304 3.714798 AGAACACTAACCTGAAGGGACAA 59.285 43.478 0.56 0.00 40.27 3.18
5299 6355 1.985895 CAGAGTTAAAGGGAGGTGGGT 59.014 52.381 0.00 0.00 0.00 4.51
5302 6358 5.675538 CCTAATCAGAGTTAAAGGGAGGTG 58.324 45.833 0.00 0.00 0.00 4.00
5314 6370 2.254152 TGTCCAGGCCTAATCAGAGT 57.746 50.000 3.98 0.00 0.00 3.24
5360 6416 6.535508 GTCTTTTCTATGTGCCACTACTAAGG 59.464 42.308 0.00 0.00 0.00 2.69
5371 6431 2.695359 TCGGGTGTCTTTTCTATGTGC 58.305 47.619 0.00 0.00 0.00 4.57
5372 6432 5.902681 TCTATCGGGTGTCTTTTCTATGTG 58.097 41.667 0.00 0.00 0.00 3.21
5373 6433 5.452077 GCTCTATCGGGTGTCTTTTCTATGT 60.452 44.000 0.00 0.00 0.00 2.29
5374 6434 4.985409 GCTCTATCGGGTGTCTTTTCTATG 59.015 45.833 0.00 0.00 0.00 2.23
5375 6435 4.649674 TGCTCTATCGGGTGTCTTTTCTAT 59.350 41.667 0.00 0.00 0.00 1.98
5376 6436 4.021229 TGCTCTATCGGGTGTCTTTTCTA 58.979 43.478 0.00 0.00 0.00 2.10
5377 6437 2.832129 TGCTCTATCGGGTGTCTTTTCT 59.168 45.455 0.00 0.00 0.00 2.52
5389 6449 9.430838 CTCAGAAAAACATAAAATGCTCTATCG 57.569 33.333 0.00 0.00 0.00 2.92
5476 6839 8.982723 ACCATGTATTACTTCAGACAAGACTAT 58.017 33.333 0.00 0.00 0.00 2.12
5477 6840 8.362464 ACCATGTATTACTTCAGACAAGACTA 57.638 34.615 0.00 0.00 0.00 2.59
5478 6841 7.246171 ACCATGTATTACTTCAGACAAGACT 57.754 36.000 0.00 0.00 0.00 3.24
5479 6842 7.907214 AACCATGTATTACTTCAGACAAGAC 57.093 36.000 0.00 0.00 0.00 3.01
5480 6843 8.154203 TCAAACCATGTATTACTTCAGACAAGA 58.846 33.333 0.00 0.00 0.00 3.02
5481 6844 8.322906 TCAAACCATGTATTACTTCAGACAAG 57.677 34.615 0.00 0.00 0.00 3.16
5482 6845 8.154203 TCTCAAACCATGTATTACTTCAGACAA 58.846 33.333 0.00 0.00 0.00 3.18
5483 6846 7.676004 TCTCAAACCATGTATTACTTCAGACA 58.324 34.615 0.00 0.00 0.00 3.41
5484 6847 8.723942 ATCTCAAACCATGTATTACTTCAGAC 57.276 34.615 0.00 0.00 0.00 3.51
5514 6877 3.524095 AACCATCACCCAAAGACATCA 57.476 42.857 0.00 0.00 0.00 3.07
5520 6883 4.670896 AAGAACAAACCATCACCCAAAG 57.329 40.909 0.00 0.00 0.00 2.77
5567 6930 8.307483 ACCTCCTATACAACAAATATGATCTCG 58.693 37.037 0.00 0.00 0.00 4.04
5575 6938 6.611642 AGAGCTCACCTCCTATACAACAAATA 59.388 38.462 17.77 0.00 41.74 1.40
5671 7034 3.865684 GCATTGTAAACCAAGCAGCCATT 60.866 43.478 0.00 0.00 36.25 3.16
5688 7051 3.057386 TCAGCCATGTGTAAACAGCATTG 60.057 43.478 0.58 0.00 0.00 2.82
5696 7059 7.946207 TGTTAGATTTTTCAGCCATGTGTAAA 58.054 30.769 0.00 0.00 0.00 2.01
5737 7101 9.332713 TGAAAATGGGGGAGAAAATATTAGTTT 57.667 29.630 0.00 0.00 0.00 2.66
5773 7137 2.345782 TAACCACCAGTCCACCCATA 57.654 50.000 0.00 0.00 0.00 2.74
5815 7179 4.213482 AGGAACTTGTCGTAATTGTTCAGC 59.787 41.667 0.00 0.00 38.82 4.26
5882 7247 5.999600 ACAACCAAACACATACTAGTTACCC 59.000 40.000 0.00 0.00 0.00 3.69
5885 7250 6.828788 TGGACAACCAAACACATACTAGTTA 58.171 36.000 0.00 0.00 43.91 2.24
5916 7281 9.973661 ATAGAGTTAGAGCTCATACAGTCATAT 57.026 33.333 17.77 5.90 37.94 1.78
5917 7282 9.800572 AATAGAGTTAGAGCTCATACAGTCATA 57.199 33.333 17.77 4.06 37.94 2.15
5918 7283 8.704849 AATAGAGTTAGAGCTCATACAGTCAT 57.295 34.615 17.77 3.33 37.94 3.06
5931 7296 7.178274 AGACCTGCCATATGAATAGAGTTAGAG 59.822 40.741 3.65 0.00 0.00 2.43
5945 7310 6.192970 ACAGCTATAAAAGACCTGCCATAT 57.807 37.500 0.00 0.00 0.00 1.78
5950 7315 2.866762 CGGACAGCTATAAAAGACCTGC 59.133 50.000 0.00 0.00 0.00 4.85
6013 7378 2.093973 AGGAGCTGGACGAAACACATAG 60.094 50.000 0.00 0.00 0.00 2.23
6057 7422 9.630098 ACACATGAAAAACATCAATAATGAGTC 57.370 29.630 0.00 0.00 39.39 3.36
6058 7423 9.414295 CACACATGAAAAACATCAATAATGAGT 57.586 29.630 0.00 0.00 39.39 3.41
6059 7424 9.414295 ACACACATGAAAAACATCAATAATGAG 57.586 29.630 0.00 0.00 39.39 2.90
6073 7440 9.457110 GTGTCACAAATTATACACACATGAAAA 57.543 29.630 0.00 0.00 41.43 2.29
6102 7469 8.958119 TTCTTAATTCGCCAATCTACAGTAAT 57.042 30.769 0.00 0.00 0.00 1.89
6105 7472 6.313905 CACTTCTTAATTCGCCAATCTACAGT 59.686 38.462 0.00 0.00 0.00 3.55
6151 7521 2.912967 GCTGACGCACAAAATCATTCAG 59.087 45.455 0.00 0.00 35.78 3.02
6153 7523 1.906966 CGCTGACGCACAAAATCATTC 59.093 47.619 0.00 0.00 35.30 2.67
6168 7538 0.320421 GTCCTTTACTGTGCCGCTGA 60.320 55.000 0.00 0.00 0.00 4.26
6174 7544 3.299340 TCGAGAAGTCCTTTACTGTGC 57.701 47.619 0.00 0.00 38.88 4.57
6175 7545 4.810790 ACATCGAGAAGTCCTTTACTGTG 58.189 43.478 0.00 0.00 38.88 3.66
6180 7550 7.463961 ACTAAGAACATCGAGAAGTCCTTTA 57.536 36.000 0.00 0.00 0.00 1.85
6233 7603 3.057734 GTGAAAGCACGCTGTACTAGTT 58.942 45.455 0.00 0.00 34.94 2.24
6279 7650 8.380644 CACATAACATTTGTACGGAAGAGTTAG 58.619 37.037 11.55 8.44 0.00 2.34
6289 7660 6.247903 CCAGTTAGCACATAACATTTGTACG 58.752 40.000 1.07 0.00 45.34 3.67
6320 7693 0.038251 TGGTGTGACATCGCTCTGTC 60.038 55.000 8.20 8.20 44.70 3.51
6330 7703 3.360867 ACCTTCAACAATTGGTGTGACA 58.639 40.909 22.46 0.60 40.60 3.58
6345 7718 1.549037 GCCCAACCACCATAACCTTCA 60.549 52.381 0.00 0.00 0.00 3.02
6369 7742 0.106868 TTGGGACTATCTCCGCTCGA 60.107 55.000 0.00 0.00 40.56 4.04
6387 7760 1.270839 CCTGGGTATGCGGATTCGATT 60.271 52.381 0.00 0.00 39.00 3.34
6411 7784 1.927487 TACTTACGACAAGCTCCCCA 58.073 50.000 0.00 0.00 0.00 4.96
6432 7805 8.731275 TTGAATGACATAATACAACTGGTAGG 57.269 34.615 0.00 0.00 34.92 3.18
6462 7835 6.486657 AGCAAGCATAACATATCCATAAACGT 59.513 34.615 0.00 0.00 0.00 3.99
6469 7842 3.952967 TGCAAGCAAGCATAACATATCCA 59.047 39.130 0.00 0.00 40.11 3.41
6492 7865 3.265791 GTTGCAGTCAAGTCCCTCATAG 58.734 50.000 0.00 0.00 31.93 2.23
6510 7883 2.036958 TTGGACAGCCCGATATGTTG 57.963 50.000 0.00 0.00 37.93 3.33
6529 7902 4.997395 GCCATCCACTATTCATGTTACGAT 59.003 41.667 0.00 0.00 0.00 3.73
6544 7917 4.937620 CACATATATACCACTGCCATCCAC 59.062 45.833 0.00 0.00 0.00 4.02
6547 7925 5.178797 GGACACATATATACCACTGCCATC 58.821 45.833 0.00 0.00 0.00 3.51
6548 7926 4.597075 TGGACACATATATACCACTGCCAT 59.403 41.667 0.00 0.00 0.00 4.40
6549 7927 3.970640 TGGACACATATATACCACTGCCA 59.029 43.478 0.00 0.00 0.00 4.92
6551 7929 5.611374 ACTTGGACACATATATACCACTGC 58.389 41.667 0.00 0.00 0.00 4.40
6552 7930 6.816136 TGACTTGGACACATATATACCACTG 58.184 40.000 0.00 0.00 0.00 3.66
6554 7932 7.307989 GCATTGACTTGGACACATATATACCAC 60.308 40.741 0.00 0.00 0.00 4.16
6555 7933 6.710295 GCATTGACTTGGACACATATATACCA 59.290 38.462 0.00 0.00 0.00 3.25
6557 7935 7.969536 AGCATTGACTTGGACACATATATAC 57.030 36.000 0.00 0.00 0.00 1.47
6562 7941 5.420725 ACTAGCATTGACTTGGACACATA 57.579 39.130 0.00 0.00 0.00 2.29
6575 7954 9.459640 CAATGAGGATATTTGAAACTAGCATTG 57.540 33.333 0.00 0.00 34.08 2.82
6576 7955 8.139989 GCAATGAGGATATTTGAAACTAGCATT 58.860 33.333 0.00 0.00 0.00 3.56
6597 7976 7.997107 ATCAACATTATTTAGCAGTGCAATG 57.003 32.000 19.20 18.78 0.00 2.82
6616 7995 9.726438 AGCATAAATCCCTGTAGTTATATCAAC 57.274 33.333 0.00 0.00 0.00 3.18
6627 8006 5.071250 ACATAACCGAGCATAAATCCCTGTA 59.929 40.000 0.00 0.00 0.00 2.74
6632 8012 8.773404 ATAACTACATAACCGAGCATAAATCC 57.227 34.615 0.00 0.00 0.00 3.01
6641 8021 6.579865 ACAAAGGGATAACTACATAACCGAG 58.420 40.000 0.00 0.00 0.00 4.63
6642 8022 6.549433 ACAAAGGGATAACTACATAACCGA 57.451 37.500 0.00 0.00 0.00 4.69
6644 8024 9.106070 CAGTTACAAAGGGATAACTACATAACC 57.894 37.037 0.00 0.00 39.15 2.85
6687 8069 3.922240 TGTTATAAACGTTGCTCCGACTC 59.078 43.478 0.00 0.00 0.00 3.36
6688 8070 3.916761 TGTTATAAACGTTGCTCCGACT 58.083 40.909 0.00 0.00 0.00 4.18
6692 8074 5.220605 GGTCAGATGTTATAAACGTTGCTCC 60.221 44.000 0.00 0.00 0.00 4.70
6761 8144 9.287373 ACCAAAATATAAGACGTTTTTGTAGGA 57.713 29.630 15.79 0.00 37.36 2.94
6766 8149 8.229137 TCCGTACCAAAATATAAGACGTTTTTG 58.771 33.333 11.96 11.96 38.28 2.44
6768 8151 7.064966 CCTCCGTACCAAAATATAAGACGTTTT 59.935 37.037 0.00 0.00 0.00 2.43
6769 8152 6.536224 CCTCCGTACCAAAATATAAGACGTTT 59.464 38.462 0.00 0.00 0.00 3.60
6770 8153 6.044682 CCTCCGTACCAAAATATAAGACGTT 58.955 40.000 0.00 0.00 0.00 3.99
6771 8154 5.127682 ACCTCCGTACCAAAATATAAGACGT 59.872 40.000 0.00 0.00 0.00 4.34
6772 8155 5.594926 ACCTCCGTACCAAAATATAAGACG 58.405 41.667 0.00 0.00 0.00 4.18
6773 8156 7.720442 ACTACCTCCGTACCAAAATATAAGAC 58.280 38.462 0.00 0.00 0.00 3.01
6774 8157 7.902920 ACTACCTCCGTACCAAAATATAAGA 57.097 36.000 0.00 0.00 0.00 2.10
6775 8158 9.071276 TCTACTACCTCCGTACCAAAATATAAG 57.929 37.037 0.00 0.00 0.00 1.73
6776 8159 8.995027 TCTACTACCTCCGTACCAAAATATAA 57.005 34.615 0.00 0.00 0.00 0.98
6777 8160 8.995027 TTCTACTACCTCCGTACCAAAATATA 57.005 34.615 0.00 0.00 0.00 0.86
6778 8161 7.781693 TCTTCTACTACCTCCGTACCAAAATAT 59.218 37.037 0.00 0.00 0.00 1.28
6779 8162 7.118723 TCTTCTACTACCTCCGTACCAAAATA 58.881 38.462 0.00 0.00 0.00 1.40
6780 8163 5.954150 TCTTCTACTACCTCCGTACCAAAAT 59.046 40.000 0.00 0.00 0.00 1.82
6781 8164 5.324409 TCTTCTACTACCTCCGTACCAAAA 58.676 41.667 0.00 0.00 0.00 2.44
6782 8165 4.922206 TCTTCTACTACCTCCGTACCAAA 58.078 43.478 0.00 0.00 0.00 3.28
6783 8166 4.574674 TCTTCTACTACCTCCGTACCAA 57.425 45.455 0.00 0.00 0.00 3.67
6784 8167 4.225942 TCTTCTTCTACTACCTCCGTACCA 59.774 45.833 0.00 0.00 0.00 3.25
6785 8168 4.775236 TCTTCTTCTACTACCTCCGTACC 58.225 47.826 0.00 0.00 0.00 3.34
6786 8169 5.294060 CACTCTTCTTCTACTACCTCCGTAC 59.706 48.000 0.00 0.00 0.00 3.67
6787 8170 5.046014 ACACTCTTCTTCTACTACCTCCGTA 60.046 44.000 0.00 0.00 0.00 4.02
6788 8171 4.263418 ACACTCTTCTTCTACTACCTCCGT 60.263 45.833 0.00 0.00 0.00 4.69
6789 8172 4.263435 ACACTCTTCTTCTACTACCTCCG 58.737 47.826 0.00 0.00 0.00 4.63
6790 8173 5.503002 AGACACTCTTCTTCTACTACCTCC 58.497 45.833 0.00 0.00 0.00 4.30
6791 8174 7.457024 AAAGACACTCTTCTTCTACTACCTC 57.543 40.000 0.00 0.00 35.27 3.85
6792 8175 7.506261 TGAAAAGACACTCTTCTTCTACTACCT 59.494 37.037 0.00 0.00 35.27 3.08
6793 8176 7.659186 TGAAAAGACACTCTTCTTCTACTACC 58.341 38.462 0.00 0.00 35.27 3.18
6794 8177 9.699703 ATTGAAAAGACACTCTTCTTCTACTAC 57.300 33.333 0.00 0.00 35.27 2.73
6796 8179 9.050601 CAATTGAAAAGACACTCTTCTTCTACT 57.949 33.333 0.00 0.00 35.27 2.57
6797 8180 9.046296 TCAATTGAAAAGACACTCTTCTTCTAC 57.954 33.333 5.45 0.00 35.27 2.59
6814 8197 6.093357 GGCACAACCTTTTCTTTCAATTGAAA 59.907 34.615 27.39 27.39 37.28 2.69
6940 8323 1.022735 GAGTCTCGGCGTATGAAGGA 58.977 55.000 6.85 0.00 0.00 3.36
7013 8396 2.416747 GGCATCAAGGAAAAACAAGGC 58.583 47.619 0.00 0.00 0.00 4.35
7134 8517 3.891049 CCCAGATCTCCTACAAAAAGGG 58.109 50.000 0.00 0.00 37.24 3.95
7283 8668 3.572255 ACTGTTTGGGCGTGAAACAATAT 59.428 39.130 8.74 0.00 41.53 1.28
7284 8669 2.952978 ACTGTTTGGGCGTGAAACAATA 59.047 40.909 8.74 0.00 41.53 1.90
7285 8670 1.754226 ACTGTTTGGGCGTGAAACAAT 59.246 42.857 8.74 0.00 41.53 2.71
7286 8671 1.178276 ACTGTTTGGGCGTGAAACAA 58.822 45.000 8.74 0.00 41.53 2.83
7290 8675 0.881159 CCGTACTGTTTGGGCGTGAA 60.881 55.000 0.00 0.00 0.00 3.18
7292 8677 2.322081 CCCGTACTGTTTGGGCGTG 61.322 63.158 4.36 0.00 35.82 5.34
7339 8729 5.130643 TCCGGGTAAACATGATGTGGTAATA 59.869 40.000 0.00 0.00 0.00 0.98
7345 8735 2.618241 CCATCCGGGTAAACATGATGTG 59.382 50.000 0.00 0.00 32.78 3.21
7366 8756 2.592861 GGATCTGTGGCATCCGGC 60.593 66.667 0.00 0.00 43.74 6.13
7379 8781 0.248539 GCTACGGACACACGAGGATC 60.249 60.000 0.00 0.00 37.61 3.36
7394 8796 1.082690 GCTGACCAGAGCAAAGCTAC 58.917 55.000 0.47 0.00 39.88 3.58
7403 8805 2.505777 CGTGCTCGCTGACCAGAG 60.506 66.667 0.47 0.00 37.54 3.35
7418 8825 5.061179 ACAACTATCAAAAACACTAGGCGT 58.939 37.500 0.00 0.00 0.00 5.68
7420 8827 7.306574 GCAAAACAACTATCAAAAACACTAGGC 60.307 37.037 0.00 0.00 0.00 3.93
7425 8832 5.815222 AGGGCAAAACAACTATCAAAAACAC 59.185 36.000 0.00 0.00 0.00 3.32
7429 8836 6.127196 ACAAGAGGGCAAAACAACTATCAAAA 60.127 34.615 0.00 0.00 0.00 2.44
7437 8844 3.130340 TCTCAACAAGAGGGCAAAACAAC 59.870 43.478 0.00 0.00 44.81 3.32
7506 8913 6.715280 ACATTACATTCCTTCTGTCTGACAT 58.285 36.000 11.45 0.00 0.00 3.06
7507 8914 6.114187 ACATTACATTCCTTCTGTCTGACA 57.886 37.500 10.50 10.50 0.00 3.58
7541 8949 4.226427 TCCTGTGAATCAAGATTCCCTG 57.774 45.455 17.51 11.25 44.93 4.45
7546 8954 7.601508 GCTTTGAAAATCCTGTGAATCAAGATT 59.398 33.333 0.00 0.00 38.42 2.40
7609 9022 4.869297 TGTGAAGCAATCAAACAAACCAAG 59.131 37.500 0.00 0.00 40.50 3.61
7678 9092 6.883744 TCCCTAAAAAGCAACTTCACAAAAT 58.116 32.000 0.00 0.00 0.00 1.82
7707 9121 9.613428 CTTGGAAAGTTTTTCCTAAGGATTTTT 57.387 29.630 18.43 0.00 39.70 1.94
7708 9122 8.210946 CCTTGGAAAGTTTTTCCTAAGGATTTT 58.789 33.333 26.67 0.00 44.25 1.82
7709 9123 7.567250 TCCTTGGAAAGTTTTTCCTAAGGATTT 59.433 33.333 27.83 1.77 44.25 2.17
7710 9124 7.073208 TCCTTGGAAAGTTTTTCCTAAGGATT 58.927 34.615 27.83 0.00 44.25 3.01
7711 9125 6.620429 TCCTTGGAAAGTTTTTCCTAAGGAT 58.380 36.000 27.83 0.00 44.25 3.24
7713 9127 6.918067 ATCCTTGGAAAGTTTTTCCTAAGG 57.082 37.500 25.84 25.84 44.25 2.69
7717 9131 9.778741 GATTTAAATCCTTGGAAAGTTTTTCCT 57.221 29.630 16.05 2.83 44.25 3.36
7782 9479 7.658167 TCGGTGTTATGTTGACTTATTCTGAAA 59.342 33.333 0.00 0.00 0.00 2.69
7785 9482 6.590292 ACTCGGTGTTATGTTGACTTATTCTG 59.410 38.462 0.00 0.00 0.00 3.02
7821 9518 6.153000 ACCATCAAGAGTAACGATTAGTGTCT 59.847 38.462 0.00 0.00 0.00 3.41
7827 9524 7.107639 TCATCACCATCAAGAGTAACGATTA 57.892 36.000 0.00 0.00 0.00 1.75
7828 9525 5.977635 TCATCACCATCAAGAGTAACGATT 58.022 37.500 0.00 0.00 0.00 3.34
7840 9562 6.016610 CACAATCAATAGCATCATCACCATCA 60.017 38.462 0.00 0.00 0.00 3.07
7846 9568 6.124340 AGGTTCACAATCAATAGCATCATCA 58.876 36.000 0.00 0.00 0.00 3.07
7849 9571 9.797642 AATATAGGTTCACAATCAATAGCATCA 57.202 29.630 0.00 0.00 0.00 3.07
7907 9629 2.981859 ATAGTTCCGCTTTCCGTGAT 57.018 45.000 0.00 0.00 34.38 3.06
7917 9639 6.649557 AGGTAAGTATTGCATAATAGTTCCGC 59.350 38.462 2.42 0.00 40.10 5.54
7930 9652 7.760131 TCGTGTTACATAAGGTAAGTATTGC 57.240 36.000 0.00 0.00 42.44 3.56
7979 9701 6.578172 GGTGCATTTGTTGTTATTGATTTTGC 59.422 34.615 0.00 0.00 0.00 3.68
7982 9704 7.215789 TCTGGTGCATTTGTTGTTATTGATTT 58.784 30.769 0.00 0.00 0.00 2.17
7985 9707 5.781210 TCTGGTGCATTTGTTGTTATTGA 57.219 34.783 0.00 0.00 0.00 2.57
7986 9708 7.385752 AGAATTCTGGTGCATTTGTTGTTATTG 59.614 33.333 7.30 0.00 0.00 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.