Multiple sequence alignment - TraesCS4A01G003300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G003300 chr4A 100.000 3417 0 0 1 3417 2736431 2739847 0.000000e+00 6311.0
1 TraesCS4A01G003300 chr4A 87.111 1800 172 32 663 2421 2556637 2554857 0.000000e+00 1984.0
2 TraesCS4A01G003300 chr4A 88.192 1499 152 18 972 2457 2774595 2776081 0.000000e+00 1764.0
3 TraesCS4A01G003300 chr4D 94.179 2096 99 11 564 2650 468900302 468898221 0.000000e+00 3173.0
4 TraesCS4A01G003300 chr4D 88.198 1720 153 37 722 2421 469163828 469165517 0.000000e+00 2006.0
5 TraesCS4A01G003300 chr4D 88.231 1470 150 17 996 2457 468863174 468861720 0.000000e+00 1735.0
6 TraesCS4A01G003300 chr4D 89.503 543 55 2 2675 3216 468898003 468897462 0.000000e+00 686.0
7 TraesCS4A01G003300 chr4D 84.973 366 46 6 206 563 477581398 477581034 2.510000e-96 363.0
8 TraesCS4A01G003300 chr4D 88.614 202 16 2 8 202 468900496 468900295 4.410000e-59 239.0
9 TraesCS4A01G003300 chr4B 91.271 1936 91 29 623 2528 588694322 588692435 0.000000e+00 2567.0
10 TraesCS4A01G003300 chr4B 88.321 1447 137 11 988 2421 588844704 588846131 0.000000e+00 1707.0
11 TraesCS4A01G003300 chr4B 87.159 1503 161 23 976 2457 588592122 588590631 0.000000e+00 1677.0
12 TraesCS4A01G003300 chr4B 85.481 978 138 3 1483 2456 663985664 663986641 0.000000e+00 1016.0
13 TraesCS4A01G003300 chr4B 87.826 345 27 5 2513 2842 588692421 588692077 1.150000e-104 390.0
14 TraesCS4A01G003300 chr4B 88.125 160 19 0 17 176 588694481 588694322 1.250000e-44 191.0
15 TraesCS4A01G003300 chr5B 90.167 1261 84 20 995 2246 636977422 636978651 0.000000e+00 1605.0
16 TraesCS4A01G003300 chr5B 86.704 361 44 4 206 563 532566127 532565768 6.870000e-107 398.0
17 TraesCS4A01G003300 chr3B 94.368 728 40 1 1573 2300 367106151 367105425 0.000000e+00 1116.0
18 TraesCS4A01G003300 chr3B 88.235 595 42 12 987 1580 367121705 367121138 0.000000e+00 686.0
19 TraesCS4A01G003300 chr7D 86.351 359 46 3 206 562 39740660 39740303 4.140000e-104 388.0
20 TraesCS4A01G003300 chr7D 85.635 362 47 5 206 563 550885129 550885489 3.220000e-100 375.0
21 TraesCS4A01G003300 chr3D 86.150 361 47 3 206 563 567114712 567114352 1.490000e-103 387.0
22 TraesCS4A01G003300 chr1D 84.595 370 49 8 198 562 417897818 417897452 9.010000e-96 361.0
23 TraesCS4A01G003300 chr1D 84.615 364 46 8 206 563 9028262 9027903 1.510000e-93 353.0
24 TraesCS4A01G003300 chr6D 84.807 362 49 4 206 561 446228888 446228527 3.240000e-95 359.0
25 TraesCS4A01G003300 chr1B 84.444 360 54 2 206 563 35959399 35959758 1.510000e-93 353.0
26 TraesCS4A01G003300 chr7A 78.151 238 42 8 2933 3165 668018910 668018678 3.550000e-30 143.0
27 TraesCS4A01G003300 chr1A 94.828 58 3 0 2831 2888 550305818 550305875 1.310000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G003300 chr4A 2736431 2739847 3416 False 6311.000000 6311 100.000000 1 3417 1 chr4A.!!$F1 3416
1 TraesCS4A01G003300 chr4A 2554857 2556637 1780 True 1984.000000 1984 87.111000 663 2421 1 chr4A.!!$R1 1758
2 TraesCS4A01G003300 chr4A 2774595 2776081 1486 False 1764.000000 1764 88.192000 972 2457 1 chr4A.!!$F2 1485
3 TraesCS4A01G003300 chr4D 469163828 469165517 1689 False 2006.000000 2006 88.198000 722 2421 1 chr4D.!!$F1 1699
4 TraesCS4A01G003300 chr4D 468861720 468863174 1454 True 1735.000000 1735 88.231000 996 2457 1 chr4D.!!$R1 1461
5 TraesCS4A01G003300 chr4D 468897462 468900496 3034 True 1366.000000 3173 90.765333 8 3216 3 chr4D.!!$R3 3208
6 TraesCS4A01G003300 chr4B 588844704 588846131 1427 False 1707.000000 1707 88.321000 988 2421 1 chr4B.!!$F1 1433
7 TraesCS4A01G003300 chr4B 588590631 588592122 1491 True 1677.000000 1677 87.159000 976 2457 1 chr4B.!!$R1 1481
8 TraesCS4A01G003300 chr4B 588692077 588694481 2404 True 1049.333333 2567 89.074000 17 2842 3 chr4B.!!$R2 2825
9 TraesCS4A01G003300 chr4B 663985664 663986641 977 False 1016.000000 1016 85.481000 1483 2456 1 chr4B.!!$F2 973
10 TraesCS4A01G003300 chr5B 636977422 636978651 1229 False 1605.000000 1605 90.167000 995 2246 1 chr5B.!!$F1 1251
11 TraesCS4A01G003300 chr3B 367105425 367106151 726 True 1116.000000 1116 94.368000 1573 2300 1 chr3B.!!$R1 727
12 TraesCS4A01G003300 chr3B 367121138 367121705 567 True 686.000000 686 88.235000 987 1580 1 chr3B.!!$R2 593

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
198 206 0.031585 GCGAAACCCAACCTGAAACC 59.968 55.0 0.0 0.0 0.00 3.27 F
655 663 0.035458 AGCACTAGCCTCGCAAGTTT 59.965 50.0 0.0 0.0 43.56 2.66 F
828 865 0.182775 AGTGTCCACGCCCTTTTCTT 59.817 50.0 0.0 0.0 36.20 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1020 1097 0.672401 CGTACACCGGCTTCACCATT 60.672 55.000 0.0 0.0 39.03 3.16 R
1741 1863 1.655329 GTAGGCGTCTCCATCTCCG 59.345 63.158 0.0 0.0 37.29 4.63 R
2780 3158 1.365633 GTCTCCATAGCAGCCCTCG 59.634 63.158 0.0 0.0 0.00 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
156 164 4.810790 TCGGTGAATCAGAGAAGAGAAAC 58.189 43.478 0.00 0.00 0.00 2.78
165 173 4.021894 TCAGAGAAGAGAAACACTAGGTGC 60.022 45.833 0.00 0.00 36.98 5.01
178 186 6.964088 ACACTAGGTGCAAACCGTGAGTTT 62.964 45.833 12.57 0.00 42.08 2.66
189 197 0.378962 CGTGAGTTTGCGAAACCCAA 59.621 50.000 7.77 0.00 42.34 4.12
192 200 1.029681 GAGTTTGCGAAACCCAACCT 58.970 50.000 7.77 0.00 42.34 3.50
193 201 0.744281 AGTTTGCGAAACCCAACCTG 59.256 50.000 7.77 0.00 42.34 4.00
194 202 0.741915 GTTTGCGAAACCCAACCTGA 59.258 50.000 0.00 0.00 35.35 3.86
195 203 1.135333 GTTTGCGAAACCCAACCTGAA 59.865 47.619 0.00 0.00 35.35 3.02
196 204 1.475403 TTGCGAAACCCAACCTGAAA 58.525 45.000 0.00 0.00 0.00 2.69
197 205 0.741915 TGCGAAACCCAACCTGAAAC 59.258 50.000 0.00 0.00 0.00 2.78
198 206 0.031585 GCGAAACCCAACCTGAAACC 59.968 55.000 0.00 0.00 0.00 3.27
199 207 1.394618 CGAAACCCAACCTGAAACCA 58.605 50.000 0.00 0.00 0.00 3.67
200 208 1.960689 CGAAACCCAACCTGAAACCAT 59.039 47.619 0.00 0.00 0.00 3.55
201 209 2.288152 CGAAACCCAACCTGAAACCATG 60.288 50.000 0.00 0.00 0.00 3.66
202 210 1.047801 AACCCAACCTGAAACCATGC 58.952 50.000 0.00 0.00 0.00 4.06
203 211 0.105760 ACCCAACCTGAAACCATGCA 60.106 50.000 0.00 0.00 0.00 3.96
204 212 1.269012 CCCAACCTGAAACCATGCAT 58.731 50.000 0.00 0.00 0.00 3.96
205 213 1.205417 CCCAACCTGAAACCATGCATC 59.795 52.381 0.00 0.00 0.00 3.91
206 214 1.894466 CCAACCTGAAACCATGCATCA 59.106 47.619 0.00 0.00 0.00 3.07
207 215 2.299582 CCAACCTGAAACCATGCATCAA 59.700 45.455 0.00 0.00 0.00 2.57
208 216 3.055675 CCAACCTGAAACCATGCATCAAT 60.056 43.478 0.00 0.00 0.00 2.57
209 217 3.880047 ACCTGAAACCATGCATCAATG 57.120 42.857 0.00 0.00 0.00 2.82
210 218 3.167485 ACCTGAAACCATGCATCAATGT 58.833 40.909 0.00 0.00 0.00 2.71
211 219 3.579586 ACCTGAAACCATGCATCAATGTT 59.420 39.130 0.00 0.00 0.00 2.71
212 220 4.040706 ACCTGAAACCATGCATCAATGTTT 59.959 37.500 0.00 4.58 0.00 2.83
213 221 4.998672 CCTGAAACCATGCATCAATGTTTT 59.001 37.500 0.00 0.00 0.00 2.43
214 222 5.106869 CCTGAAACCATGCATCAATGTTTTG 60.107 40.000 0.00 2.87 0.00 2.44
215 223 4.755629 TGAAACCATGCATCAATGTTTTGG 59.244 37.500 0.00 0.00 33.44 3.28
216 224 4.354893 AACCATGCATCAATGTTTTGGT 57.645 36.364 0.00 0.00 37.73 3.67
217 225 4.354893 ACCATGCATCAATGTTTTGGTT 57.645 36.364 0.00 0.00 34.85 3.67
218 226 5.480642 ACCATGCATCAATGTTTTGGTTA 57.519 34.783 0.00 0.00 34.85 2.85
219 227 6.052405 ACCATGCATCAATGTTTTGGTTAT 57.948 33.333 0.00 0.00 34.85 1.89
220 228 6.108015 ACCATGCATCAATGTTTTGGTTATC 58.892 36.000 0.00 0.00 34.85 1.75
221 229 5.232626 CCATGCATCAATGTTTTGGTTATCG 59.767 40.000 0.00 0.00 33.44 2.92
222 230 5.635417 TGCATCAATGTTTTGGTTATCGA 57.365 34.783 0.00 0.00 33.44 3.59
223 231 6.018589 TGCATCAATGTTTTGGTTATCGAA 57.981 33.333 0.00 0.00 33.44 3.71
224 232 6.629128 TGCATCAATGTTTTGGTTATCGAAT 58.371 32.000 0.00 0.00 33.44 3.34
225 233 7.766283 TGCATCAATGTTTTGGTTATCGAATA 58.234 30.769 0.00 0.00 33.44 1.75
226 234 7.914871 TGCATCAATGTTTTGGTTATCGAATAG 59.085 33.333 0.00 0.00 33.44 1.73
227 235 7.379529 GCATCAATGTTTTGGTTATCGAATAGG 59.620 37.037 0.00 0.00 33.44 2.57
228 236 7.328277 TCAATGTTTTGGTTATCGAATAGGG 57.672 36.000 0.00 0.00 33.44 3.53
229 237 5.767816 ATGTTTTGGTTATCGAATAGGGC 57.232 39.130 0.00 0.00 0.00 5.19
230 238 4.590918 TGTTTTGGTTATCGAATAGGGCA 58.409 39.130 0.00 0.00 0.00 5.36
231 239 5.197451 TGTTTTGGTTATCGAATAGGGCAT 58.803 37.500 0.00 0.00 0.00 4.40
232 240 5.654650 TGTTTTGGTTATCGAATAGGGCATT 59.345 36.000 0.00 0.00 0.00 3.56
233 241 6.153680 TGTTTTGGTTATCGAATAGGGCATTT 59.846 34.615 0.00 0.00 0.00 2.32
234 242 6.783708 TTTGGTTATCGAATAGGGCATTTT 57.216 33.333 0.00 0.00 0.00 1.82
235 243 6.783708 TTGGTTATCGAATAGGGCATTTTT 57.216 33.333 0.00 0.00 0.00 1.94
236 244 7.883391 TTGGTTATCGAATAGGGCATTTTTA 57.117 32.000 0.00 0.00 0.00 1.52
237 245 7.266922 TGGTTATCGAATAGGGCATTTTTAC 57.733 36.000 0.00 0.00 0.00 2.01
238 246 7.057894 TGGTTATCGAATAGGGCATTTTTACT 58.942 34.615 0.00 0.00 0.00 2.24
239 247 7.227910 TGGTTATCGAATAGGGCATTTTTACTC 59.772 37.037 0.00 0.00 0.00 2.59
240 248 7.227910 GGTTATCGAATAGGGCATTTTTACTCA 59.772 37.037 0.00 0.00 0.00 3.41
241 249 6.867662 ATCGAATAGGGCATTTTTACTCAG 57.132 37.500 0.00 0.00 0.00 3.35
242 250 5.123227 TCGAATAGGGCATTTTTACTCAGG 58.877 41.667 0.00 0.00 0.00 3.86
243 251 4.275936 CGAATAGGGCATTTTTACTCAGGG 59.724 45.833 0.00 0.00 0.00 4.45
244 252 2.532250 AGGGCATTTTTACTCAGGGG 57.468 50.000 0.00 0.00 0.00 4.79
245 253 1.007118 AGGGCATTTTTACTCAGGGGG 59.993 52.381 0.00 0.00 0.00 5.40
246 254 0.824109 GGCATTTTTACTCAGGGGGC 59.176 55.000 0.00 0.00 0.00 5.80
247 255 1.555967 GCATTTTTACTCAGGGGGCA 58.444 50.000 0.00 0.00 0.00 5.36
248 256 1.478105 GCATTTTTACTCAGGGGGCAG 59.522 52.381 0.00 0.00 0.00 4.85
249 257 2.807676 CATTTTTACTCAGGGGGCAGT 58.192 47.619 0.00 0.00 0.00 4.40
250 258 3.876156 GCATTTTTACTCAGGGGGCAGTA 60.876 47.826 0.00 0.00 0.00 2.74
251 259 4.340617 CATTTTTACTCAGGGGGCAGTAA 58.659 43.478 0.00 0.00 34.05 2.24
252 260 4.456662 TTTTTACTCAGGGGGCAGTAAA 57.543 40.909 3.72 3.72 41.31 2.01
253 261 3.428413 TTTACTCAGGGGGCAGTAAAC 57.572 47.619 3.72 0.00 39.22 2.01
254 262 0.899720 TACTCAGGGGGCAGTAAACG 59.100 55.000 0.00 0.00 0.00 3.60
255 263 1.125711 ACTCAGGGGGCAGTAAACGT 61.126 55.000 0.00 0.00 0.00 3.99
256 264 0.899720 CTCAGGGGGCAGTAAACGTA 59.100 55.000 0.00 0.00 0.00 3.57
257 265 0.899720 TCAGGGGGCAGTAAACGTAG 59.100 55.000 0.00 0.00 0.00 3.51
272 280 3.508744 ACGTAGTTACCATGGTTACCG 57.491 47.619 26.31 24.28 37.78 4.02
273 281 3.088532 ACGTAGTTACCATGGTTACCGA 58.911 45.455 27.82 17.00 37.78 4.69
274 282 3.129287 ACGTAGTTACCATGGTTACCGAG 59.871 47.826 27.82 21.30 37.78 4.63
275 283 3.378112 CGTAGTTACCATGGTTACCGAGA 59.622 47.826 26.31 10.14 0.00 4.04
276 284 4.142403 CGTAGTTACCATGGTTACCGAGAA 60.142 45.833 26.31 9.88 0.00 2.87
277 285 4.895668 AGTTACCATGGTTACCGAGAAA 57.104 40.909 26.31 9.16 0.00 2.52
278 286 5.431179 AGTTACCATGGTTACCGAGAAAT 57.569 39.130 26.31 9.15 0.00 2.17
279 287 6.549433 AGTTACCATGGTTACCGAGAAATA 57.451 37.500 26.31 0.92 0.00 1.40
280 288 7.133133 AGTTACCATGGTTACCGAGAAATAT 57.867 36.000 26.31 5.73 0.00 1.28
281 289 7.215085 AGTTACCATGGTTACCGAGAAATATC 58.785 38.462 26.31 3.58 0.00 1.63
282 290 5.623956 ACCATGGTTACCGAGAAATATCA 57.376 39.130 13.00 0.00 0.00 2.15
283 291 5.996644 ACCATGGTTACCGAGAAATATCAA 58.003 37.500 13.00 0.00 0.00 2.57
284 292 6.055588 ACCATGGTTACCGAGAAATATCAAG 58.944 40.000 13.00 0.00 0.00 3.02
285 293 6.126883 ACCATGGTTACCGAGAAATATCAAGA 60.127 38.462 13.00 0.00 0.00 3.02
286 294 6.765989 CCATGGTTACCGAGAAATATCAAGAA 59.234 38.462 2.57 0.00 0.00 2.52
287 295 7.445402 CCATGGTTACCGAGAAATATCAAGAAT 59.555 37.037 2.57 0.00 0.00 2.40
288 296 9.489084 CATGGTTACCGAGAAATATCAAGAATA 57.511 33.333 0.00 0.00 0.00 1.75
340 348 8.741101 TTGAATTCAAATAAGTGAATGAACGG 57.259 30.769 18.45 0.00 45.42 4.44
341 349 8.105097 TGAATTCAAATAAGTGAATGAACGGA 57.895 30.769 5.45 0.00 45.42 4.69
342 350 8.020819 TGAATTCAAATAAGTGAATGAACGGAC 58.979 33.333 5.45 0.00 45.42 4.79
343 351 6.869315 TTCAAATAAGTGAATGAACGGACA 57.131 33.333 0.00 0.00 32.56 4.02
344 352 7.447374 TTCAAATAAGTGAATGAACGGACAT 57.553 32.000 0.00 0.00 32.56 3.06
345 353 7.447374 TCAAATAAGTGAATGAACGGACATT 57.553 32.000 8.62 8.62 42.19 2.71
353 361 4.503741 AATGAACGGACATTCAAACCAG 57.496 40.909 4.03 0.00 41.78 4.00
354 362 3.201353 TGAACGGACATTCAAACCAGA 57.799 42.857 0.00 0.00 35.65 3.86
355 363 3.138304 TGAACGGACATTCAAACCAGAG 58.862 45.455 0.00 0.00 35.65 3.35
356 364 3.181459 TGAACGGACATTCAAACCAGAGA 60.181 43.478 0.00 0.00 35.65 3.10
357 365 2.767505 ACGGACATTCAAACCAGAGAC 58.232 47.619 0.00 0.00 0.00 3.36
358 366 2.076863 CGGACATTCAAACCAGAGACC 58.923 52.381 0.00 0.00 0.00 3.85
359 367 2.289694 CGGACATTCAAACCAGAGACCT 60.290 50.000 0.00 0.00 0.00 3.85
360 368 3.756117 GGACATTCAAACCAGAGACCTT 58.244 45.455 0.00 0.00 0.00 3.50
361 369 4.145052 GGACATTCAAACCAGAGACCTTT 58.855 43.478 0.00 0.00 0.00 3.11
362 370 4.216472 GGACATTCAAACCAGAGACCTTTC 59.784 45.833 0.00 0.00 0.00 2.62
363 371 4.792068 ACATTCAAACCAGAGACCTTTCA 58.208 39.130 0.00 0.00 0.00 2.69
364 372 5.200483 ACATTCAAACCAGAGACCTTTCAA 58.800 37.500 0.00 0.00 0.00 2.69
365 373 5.656416 ACATTCAAACCAGAGACCTTTCAAA 59.344 36.000 0.00 0.00 0.00 2.69
366 374 6.154363 ACATTCAAACCAGAGACCTTTCAAAA 59.846 34.615 0.00 0.00 0.00 2.44
367 375 5.576447 TCAAACCAGAGACCTTTCAAAAC 57.424 39.130 0.00 0.00 0.00 2.43
368 376 5.013547 TCAAACCAGAGACCTTTCAAAACA 58.986 37.500 0.00 0.00 0.00 2.83
369 377 5.125417 TCAAACCAGAGACCTTTCAAAACAG 59.875 40.000 0.00 0.00 0.00 3.16
370 378 3.555966 ACCAGAGACCTTTCAAAACAGG 58.444 45.455 0.00 0.00 36.10 4.00
371 379 3.202151 ACCAGAGACCTTTCAAAACAGGA 59.798 43.478 0.00 0.00 33.90 3.86
372 380 3.817647 CCAGAGACCTTTCAAAACAGGAG 59.182 47.826 0.00 0.00 33.90 3.69
373 381 3.251972 CAGAGACCTTTCAAAACAGGAGC 59.748 47.826 0.00 0.00 33.90 4.70
374 382 3.137360 AGAGACCTTTCAAAACAGGAGCT 59.863 43.478 0.00 0.00 33.90 4.09
375 383 4.348168 AGAGACCTTTCAAAACAGGAGCTA 59.652 41.667 0.00 0.00 33.90 3.32
376 384 4.646572 AGACCTTTCAAAACAGGAGCTAG 58.353 43.478 0.00 0.00 33.90 3.42
377 385 3.149981 ACCTTTCAAAACAGGAGCTAGC 58.850 45.455 6.62 6.62 33.90 3.42
378 386 3.181439 ACCTTTCAAAACAGGAGCTAGCT 60.181 43.478 19.45 19.45 33.90 3.32
379 387 3.823304 CCTTTCAAAACAGGAGCTAGCTT 59.177 43.478 20.42 0.00 30.81 3.74
380 388 4.320788 CCTTTCAAAACAGGAGCTAGCTTG 60.321 45.833 20.42 16.60 30.81 4.01
381 389 3.492102 TCAAAACAGGAGCTAGCTTGT 57.508 42.857 20.42 17.32 0.00 3.16
382 390 3.820557 TCAAAACAGGAGCTAGCTTGTT 58.179 40.909 23.22 23.22 35.43 2.83
383 391 3.565482 TCAAAACAGGAGCTAGCTTGTTG 59.435 43.478 27.35 22.25 34.28 3.33
384 392 1.528129 AACAGGAGCTAGCTTGTTGC 58.472 50.000 26.50 11.96 43.29 4.17
395 403 2.510615 GCTTGTTGCTTACACGCTAG 57.489 50.000 11.75 0.00 45.67 3.42
396 404 2.066262 GCTTGTTGCTTACACGCTAGA 58.934 47.619 11.75 0.00 45.67 2.43
397 405 2.478894 GCTTGTTGCTTACACGCTAGAA 59.521 45.455 11.75 0.00 45.67 2.10
398 406 3.664537 GCTTGTTGCTTACACGCTAGAAC 60.665 47.826 11.75 0.00 45.67 3.01
399 407 2.409975 TGTTGCTTACACGCTAGAACC 58.590 47.619 0.00 0.00 0.00 3.62
400 408 2.224090 TGTTGCTTACACGCTAGAACCA 60.224 45.455 0.00 0.00 0.00 3.67
401 409 2.363788 TGCTTACACGCTAGAACCAG 57.636 50.000 0.00 0.00 0.00 4.00
402 410 1.000145 GCTTACACGCTAGAACCAGC 59.000 55.000 0.00 0.00 38.23 4.85
403 411 1.404315 GCTTACACGCTAGAACCAGCT 60.404 52.381 0.00 0.00 39.51 4.24
404 412 2.531206 CTTACACGCTAGAACCAGCTC 58.469 52.381 0.00 0.00 39.51 4.09
405 413 1.835494 TACACGCTAGAACCAGCTCT 58.165 50.000 0.00 0.00 39.51 4.09
406 414 0.528470 ACACGCTAGAACCAGCTCTC 59.472 55.000 0.00 0.00 39.51 3.20
407 415 0.528017 CACGCTAGAACCAGCTCTCA 59.472 55.000 0.00 0.00 39.51 3.27
408 416 1.135915 CACGCTAGAACCAGCTCTCAT 59.864 52.381 0.00 0.00 39.51 2.90
409 417 1.135915 ACGCTAGAACCAGCTCTCATG 59.864 52.381 0.00 0.00 39.51 3.07
410 418 1.537776 CGCTAGAACCAGCTCTCATGG 60.538 57.143 0.00 0.00 43.87 3.66
411 419 1.809651 GCTAGAACCAGCTCTCATGGC 60.810 57.143 0.00 0.00 41.87 4.40
412 420 1.483827 CTAGAACCAGCTCTCATGGCA 59.516 52.381 0.00 0.00 41.87 4.92
413 421 0.917533 AGAACCAGCTCTCATGGCAT 59.082 50.000 0.00 0.00 41.87 4.40
414 422 1.284198 AGAACCAGCTCTCATGGCATT 59.716 47.619 0.00 0.00 41.87 3.56
415 423 2.507058 AGAACCAGCTCTCATGGCATTA 59.493 45.455 0.00 0.00 41.87 1.90
416 424 3.054139 AGAACCAGCTCTCATGGCATTAA 60.054 43.478 0.00 0.00 41.87 1.40
417 425 3.589951 ACCAGCTCTCATGGCATTAAT 57.410 42.857 0.00 0.00 41.87 1.40
418 426 3.907221 ACCAGCTCTCATGGCATTAATT 58.093 40.909 0.00 0.00 41.87 1.40
419 427 4.284178 ACCAGCTCTCATGGCATTAATTT 58.716 39.130 0.00 0.00 41.87 1.82
420 428 4.340381 ACCAGCTCTCATGGCATTAATTTC 59.660 41.667 0.00 0.00 41.87 2.17
421 429 4.340097 CCAGCTCTCATGGCATTAATTTCA 59.660 41.667 0.00 0.00 0.00 2.69
422 430 5.010719 CCAGCTCTCATGGCATTAATTTCAT 59.989 40.000 0.00 0.00 0.00 2.57
423 431 6.150318 CAGCTCTCATGGCATTAATTTCATC 58.850 40.000 0.00 0.00 0.00 2.92
424 432 5.243283 AGCTCTCATGGCATTAATTTCATCC 59.757 40.000 0.00 0.00 0.00 3.51
425 433 5.243283 GCTCTCATGGCATTAATTTCATCCT 59.757 40.000 0.00 0.00 0.00 3.24
426 434 6.432162 GCTCTCATGGCATTAATTTCATCCTA 59.568 38.462 0.00 0.00 0.00 2.94
427 435 7.574592 GCTCTCATGGCATTAATTTCATCCTAC 60.575 40.741 0.00 0.00 0.00 3.18
428 436 6.427853 TCTCATGGCATTAATTTCATCCTACG 59.572 38.462 0.00 0.00 0.00 3.51
429 437 6.061441 TCATGGCATTAATTTCATCCTACGT 58.939 36.000 0.00 0.00 0.00 3.57
430 438 7.220740 TCATGGCATTAATTTCATCCTACGTA 58.779 34.615 0.00 0.00 0.00 3.57
431 439 6.854496 TGGCATTAATTTCATCCTACGTAC 57.146 37.500 0.00 0.00 0.00 3.67
432 440 6.588204 TGGCATTAATTTCATCCTACGTACT 58.412 36.000 0.00 0.00 0.00 2.73
433 441 7.051623 TGGCATTAATTTCATCCTACGTACTT 58.948 34.615 0.00 0.00 0.00 2.24
434 442 7.554835 TGGCATTAATTTCATCCTACGTACTTT 59.445 33.333 0.00 0.00 0.00 2.66
435 443 9.048446 GGCATTAATTTCATCCTACGTACTTTA 57.952 33.333 0.00 0.00 0.00 1.85
436 444 9.859692 GCATTAATTTCATCCTACGTACTTTAC 57.140 33.333 0.00 0.00 0.00 2.01
493 501 4.363991 TTTTTGCTTGGTATGGGCATTT 57.636 36.364 0.00 0.00 35.84 2.32
494 502 5.489792 TTTTTGCTTGGTATGGGCATTTA 57.510 34.783 0.00 0.00 35.84 1.40
495 503 4.464069 TTTGCTTGGTATGGGCATTTAC 57.536 40.909 0.00 0.00 35.84 2.01
496 504 2.383855 TGCTTGGTATGGGCATTTACC 58.616 47.619 3.56 3.56 38.68 2.85
497 505 1.336755 GCTTGGTATGGGCATTTACCG 59.663 52.381 5.61 0.00 40.68 4.02
498 506 2.925724 CTTGGTATGGGCATTTACCGA 58.074 47.619 5.61 3.45 40.68 4.69
499 507 2.631160 TGGTATGGGCATTTACCGAG 57.369 50.000 5.61 0.00 40.68 4.63
500 508 1.142060 TGGTATGGGCATTTACCGAGG 59.858 52.381 5.61 0.00 40.68 4.63
501 509 1.544759 GGTATGGGCATTTACCGAGGG 60.545 57.143 0.00 0.00 0.00 4.30
502 510 0.768622 TATGGGCATTTACCGAGGGG 59.231 55.000 0.00 0.00 40.11 4.79
503 511 2.518587 GGGCATTTACCGAGGGGC 60.519 66.667 0.00 0.00 36.48 5.80
504 512 2.274104 GGCATTTACCGAGGGGCA 59.726 61.111 0.00 0.00 36.48 5.36
505 513 2.119029 GGCATTTACCGAGGGGCAC 61.119 63.158 0.00 0.00 36.48 5.01
517 525 3.688159 GGGCACCGAGTACGTGGT 61.688 66.667 0.00 6.28 40.86 4.16
518 526 2.342650 GGGCACCGAGTACGTGGTA 61.343 63.158 11.13 0.00 40.86 3.25
519 527 1.586028 GGCACCGAGTACGTGGTAA 59.414 57.895 11.13 0.00 36.50 2.85
520 528 0.733909 GGCACCGAGTACGTGGTAAC 60.734 60.000 11.13 7.29 36.50 2.50
521 529 0.733909 GCACCGAGTACGTGGTAACC 60.734 60.000 11.13 1.44 36.50 2.85
522 530 0.597568 CACCGAGTACGTGGTAACCA 59.402 55.000 11.13 0.00 36.50 3.67
539 547 8.485578 TGGTAACCACAGGAAATCTTAAAATT 57.514 30.769 0.00 0.00 0.00 1.82
540 548 8.929487 TGGTAACCACAGGAAATCTTAAAATTT 58.071 29.630 0.00 0.00 0.00 1.82
541 549 9.419297 GGTAACCACAGGAAATCTTAAAATTTC 57.581 33.333 5.80 5.80 42.41 2.17
542 550 9.124807 GTAACCACAGGAAATCTTAAAATTTCG 57.875 33.333 7.91 0.00 43.52 3.46
543 551 7.519032 ACCACAGGAAATCTTAAAATTTCGA 57.481 32.000 7.91 0.00 43.52 3.71
544 552 7.368059 ACCACAGGAAATCTTAAAATTTCGAC 58.632 34.615 7.91 0.00 43.52 4.20
545 553 6.806739 CCACAGGAAATCTTAAAATTTCGACC 59.193 38.462 7.91 0.00 43.52 4.79
546 554 6.523201 CACAGGAAATCTTAAAATTTCGACCG 59.477 38.462 7.91 0.63 43.52 4.79
547 555 6.027749 CAGGAAATCTTAAAATTTCGACCGG 58.972 40.000 0.00 0.00 43.52 5.28
548 556 5.708697 AGGAAATCTTAAAATTTCGACCGGT 59.291 36.000 6.92 6.92 43.52 5.28
549 557 6.880529 AGGAAATCTTAAAATTTCGACCGGTA 59.119 34.615 7.34 0.00 43.52 4.02
550 558 7.391275 AGGAAATCTTAAAATTTCGACCGGTAA 59.609 33.333 7.34 0.00 43.52 2.85
551 559 7.482743 GGAAATCTTAAAATTTCGACCGGTAAC 59.517 37.037 7.34 0.00 43.52 2.50
552 560 5.861222 TCTTAAAATTTCGACCGGTAACC 57.139 39.130 7.34 0.00 0.00 2.85
553 561 5.303971 TCTTAAAATTTCGACCGGTAACCA 58.696 37.500 7.34 0.00 0.00 3.67
554 562 5.762218 TCTTAAAATTTCGACCGGTAACCAA 59.238 36.000 7.34 0.00 0.00 3.67
555 563 4.915158 AAAATTTCGACCGGTAACCAAA 57.085 36.364 7.34 4.53 0.00 3.28
556 564 4.915158 AAATTTCGACCGGTAACCAAAA 57.085 36.364 7.34 4.39 0.00 2.44
557 565 3.902261 ATTTCGACCGGTAACCAAAAC 57.098 42.857 7.34 0.00 0.00 2.43
558 566 1.592064 TTCGACCGGTAACCAAAACC 58.408 50.000 7.34 0.00 0.00 3.27
559 567 0.758123 TCGACCGGTAACCAAAACCT 59.242 50.000 7.34 0.00 34.66 3.50
560 568 1.140652 TCGACCGGTAACCAAAACCTT 59.859 47.619 7.34 0.00 34.66 3.50
561 569 1.264826 CGACCGGTAACCAAAACCTTG 59.735 52.381 7.34 0.00 34.66 3.61
576 584 2.807676 ACCTTGGAAACCATGATCCAC 58.192 47.619 12.61 0.00 45.14 4.02
648 656 0.745845 AAATGCCAGCACTAGCCTCG 60.746 55.000 0.00 0.00 43.56 4.63
655 663 0.035458 AGCACTAGCCTCGCAAGTTT 59.965 50.000 0.00 0.00 43.56 2.66
745 769 2.283388 TCCGTAACCGACAGGCCT 60.283 61.111 0.00 0.00 42.76 5.19
776 803 0.957395 ACGTACTCCACATCCGTCGT 60.957 55.000 0.00 0.00 0.00 4.34
808 845 2.232941 CTGTACACGGATGGTTAGGTGT 59.767 50.000 0.00 1.12 44.93 4.16
819 856 1.670967 GGTTAGGTGTAGTGTCCACGC 60.671 57.143 0.00 0.00 36.20 5.34
828 865 0.182775 AGTGTCCACGCCCTTTTCTT 59.817 50.000 0.00 0.00 36.20 2.52
856 896 2.190313 GATCATGCCGGCCACAGA 59.810 61.111 26.77 16.61 0.00 3.41
918 979 4.450082 AATCCGTTCACCAAATTAAGCC 57.550 40.909 0.00 0.00 0.00 4.35
950 1011 1.618640 GCTCGAGGTCGCAAAGTGTC 61.619 60.000 15.58 0.00 39.60 3.67
961 1022 3.058155 TCGCAAAGTGTCAGAGAGTACTC 60.058 47.826 15.41 15.41 42.90 2.59
1020 1097 0.894835 TGGAGATTACGAGCAGCACA 59.105 50.000 0.00 0.00 0.00 4.57
1040 1117 1.823169 ATGGTGAAGCCGGTGTACGT 61.823 55.000 1.90 0.00 42.24 3.57
1203 1280 4.509737 GCGCCGTACCCTCACCTC 62.510 72.222 0.00 0.00 0.00 3.85
1435 1539 1.667212 CACATCGTGCATGCATGTACT 59.333 47.619 34.88 21.10 40.59 2.73
1442 1546 3.544834 CGTGCATGCATGTACTAAGCTTC 60.545 47.826 34.88 14.80 40.59 3.86
1446 1550 2.632377 TGCATGTACTAAGCTTCTGGC 58.368 47.619 0.00 0.00 42.19 4.85
1460 1567 2.205022 TCTGGCTGCAAGTGCTTATT 57.795 45.000 3.55 0.00 42.66 1.40
1461 1568 2.517959 TCTGGCTGCAAGTGCTTATTT 58.482 42.857 3.55 0.00 42.66 1.40
1462 1569 2.229543 TCTGGCTGCAAGTGCTTATTTG 59.770 45.455 3.55 0.00 42.66 2.32
1463 1570 2.229543 CTGGCTGCAAGTGCTTATTTGA 59.770 45.455 0.50 0.00 42.66 2.69
1464 1571 2.827322 TGGCTGCAAGTGCTTATTTGAT 59.173 40.909 0.50 0.00 42.66 2.57
1465 1572 3.258872 TGGCTGCAAGTGCTTATTTGATT 59.741 39.130 0.50 0.00 42.66 2.57
1466 1573 4.248058 GGCTGCAAGTGCTTATTTGATTT 58.752 39.130 0.50 0.00 42.66 2.17
1741 1863 1.222115 GGTCACTGGAGTTCACGTGC 61.222 60.000 11.67 0.00 0.00 5.34
1801 1934 3.760684 GGATCAAAAACCTCACTCTGCAT 59.239 43.478 0.00 0.00 0.00 3.96
2123 2271 0.456312 CGAGTACGTGCAGTCCTTCC 60.456 60.000 6.38 0.00 34.56 3.46
2281 2430 3.774702 GCACCGTCCGCTTTCGTC 61.775 66.667 0.00 0.00 0.00 4.20
2475 2630 6.381481 TCATGGATGCATGTCATTAGAAAC 57.619 37.500 24.37 0.00 35.05 2.78
2610 2795 5.126707 AGGTTGACCTGTATAAGTAGTTCGG 59.873 44.000 0.97 0.00 46.55 4.30
2615 2800 6.039047 TGACCTGTATAAGTAGTTCGGTCATC 59.961 42.308 0.00 0.00 43.21 2.92
2734 3112 7.147897 GGATAAAAAGAATCTTTCGACCCCATT 60.148 37.037 8.86 0.02 34.02 3.16
2784 3162 5.424121 AGTTGACTGATTTTCAAACGAGG 57.576 39.130 0.00 0.00 34.78 4.63
2794 3172 0.107703 TCAAACGAGGGCTGCTATGG 60.108 55.000 0.00 0.00 0.00 2.74
2796 3174 0.179000 AAACGAGGGCTGCTATGGAG 59.821 55.000 0.00 0.00 0.00 3.86
2809 3187 6.426937 GGCTGCTATGGAGACGATAAAAATAA 59.573 38.462 0.00 0.00 0.00 1.40
2819 3197 5.469084 AGACGATAAAAATAAGGCCGATTCC 59.531 40.000 6.41 0.00 0.00 3.01
2867 3245 2.533318 GCAGTTAGCGAGCACTTGT 58.467 52.632 0.00 0.00 0.00 3.16
2876 3254 1.073216 CGAGCACTTGTACTCCGCTG 61.073 60.000 4.72 0.00 31.86 5.18
2884 3262 0.108186 TGTACTCCGCTGGATTGCAG 60.108 55.000 0.03 0.03 0.00 4.41
2891 3269 1.286880 GCTGGATTGCAGCGTTGTT 59.713 52.632 14.61 0.00 35.87 2.83
2914 3292 1.046472 ATATCGGCCGGGAACTGTCA 61.046 55.000 27.83 1.69 0.00 3.58
2927 3305 3.610619 CTGTCATGTGCCCGGCAGA 62.611 63.158 13.92 13.09 40.08 4.26
2948 3326 5.982516 CAGATTCGTTTTCAAATTTGGGTCA 59.017 36.000 17.90 0.00 0.00 4.02
2949 3327 5.983118 AGATTCGTTTTCAAATTTGGGTCAC 59.017 36.000 17.90 8.94 0.00 3.67
2962 3340 1.341852 TGGGTCACTCGATCGTTTTGA 59.658 47.619 15.94 12.73 0.00 2.69
2966 3344 0.366871 CACTCGATCGTTTTGAGCCG 59.633 55.000 15.94 0.00 39.22 5.52
2983 3361 1.859080 GCCGTTGGATGTAGATCGAAC 59.141 52.381 15.17 15.17 41.50 3.95
2984 3362 2.737359 GCCGTTGGATGTAGATCGAACA 60.737 50.000 21.93 6.43 43.78 3.18
3007 3385 0.393673 GGCAGCCCTTCTTCTTCCTC 60.394 60.000 0.00 0.00 0.00 3.71
3017 3395 4.163078 CCTTCTTCTTCCTCCAGCTAATCA 59.837 45.833 0.00 0.00 0.00 2.57
3020 3398 2.832838 TCTTCCTCCAGCTAATCACCA 58.167 47.619 0.00 0.00 0.00 4.17
3022 3400 3.389329 TCTTCCTCCAGCTAATCACCATC 59.611 47.826 0.00 0.00 0.00 3.51
3026 3404 1.770658 TCCAGCTAATCACCATCCCTG 59.229 52.381 0.00 0.00 0.00 4.45
3030 3408 1.771255 GCTAATCACCATCCCTGGACT 59.229 52.381 0.00 0.00 46.37 3.85
3031 3409 2.972713 GCTAATCACCATCCCTGGACTA 59.027 50.000 0.00 0.00 46.37 2.59
3033 3411 2.877154 ATCACCATCCCTGGACTACT 57.123 50.000 0.00 0.00 46.37 2.57
3119 3497 2.691732 CGTACCACCCTCCCCCTA 59.308 66.667 0.00 0.00 0.00 3.53
3165 3543 1.421346 CCATGGCCATCCCTCTAGCA 61.421 60.000 17.61 0.00 0.00 3.49
3166 3544 0.697079 CATGGCCATCCCTCTAGCAT 59.303 55.000 17.61 0.00 0.00 3.79
3169 3547 1.294780 GCCATCCCTCTAGCATCGG 59.705 63.158 0.00 0.00 0.00 4.18
3170 3548 1.294780 CCATCCCTCTAGCATCGGC 59.705 63.158 0.00 0.00 41.61 5.54
3171 3549 1.475169 CCATCCCTCTAGCATCGGCA 61.475 60.000 0.00 0.00 44.61 5.69
3173 3551 1.002888 CATCCCTCTAGCATCGGCAAT 59.997 52.381 0.00 0.00 44.61 3.56
3221 3599 4.127744 CGGCCCCACCACCATCAT 62.128 66.667 0.00 0.00 39.03 2.45
3222 3600 2.364160 GGCCCCACCACCATCATT 59.636 61.111 0.00 0.00 38.86 2.57
3223 3601 1.758122 GGCCCCACCACCATCATTC 60.758 63.158 0.00 0.00 38.86 2.67
3224 3602 1.307647 GCCCCACCACCATCATTCT 59.692 57.895 0.00 0.00 0.00 2.40
3225 3603 0.324645 GCCCCACCACCATCATTCTT 60.325 55.000 0.00 0.00 0.00 2.52
3226 3604 1.767759 CCCCACCACCATCATTCTTC 58.232 55.000 0.00 0.00 0.00 2.87
3227 3605 1.686115 CCCCACCACCATCATTCTTCC 60.686 57.143 0.00 0.00 0.00 3.46
3228 3606 1.382522 CCACCACCATCATTCTTCCG 58.617 55.000 0.00 0.00 0.00 4.30
3229 3607 0.734889 CACCACCATCATTCTTCCGC 59.265 55.000 0.00 0.00 0.00 5.54
3230 3608 0.394352 ACCACCATCATTCTTCCGCC 60.394 55.000 0.00 0.00 0.00 6.13
3231 3609 1.103398 CCACCATCATTCTTCCGCCC 61.103 60.000 0.00 0.00 0.00 6.13
3232 3610 1.103398 CACCATCATTCTTCCGCCCC 61.103 60.000 0.00 0.00 0.00 5.80
3233 3611 1.227102 CCATCATTCTTCCGCCCCA 59.773 57.895 0.00 0.00 0.00 4.96
3234 3612 1.103398 CCATCATTCTTCCGCCCCAC 61.103 60.000 0.00 0.00 0.00 4.61
3235 3613 1.103398 CATCATTCTTCCGCCCCACC 61.103 60.000 0.00 0.00 0.00 4.61
3236 3614 1.281925 ATCATTCTTCCGCCCCACCT 61.282 55.000 0.00 0.00 0.00 4.00
3237 3615 1.452108 CATTCTTCCGCCCCACCTC 60.452 63.158 0.00 0.00 0.00 3.85
3238 3616 2.680370 ATTCTTCCGCCCCACCTCC 61.680 63.158 0.00 0.00 0.00 4.30
3245 3623 2.040606 GCCCCACCTCCCACTCTA 59.959 66.667 0.00 0.00 0.00 2.43
3246 3624 1.615424 GCCCCACCTCCCACTCTAA 60.615 63.158 0.00 0.00 0.00 2.10
3247 3625 1.627297 GCCCCACCTCCCACTCTAAG 61.627 65.000 0.00 0.00 0.00 2.18
3248 3626 0.042731 CCCCACCTCCCACTCTAAGA 59.957 60.000 0.00 0.00 0.00 2.10
3249 3627 1.344496 CCCCACCTCCCACTCTAAGAT 60.344 57.143 0.00 0.00 0.00 2.40
3250 3628 1.765314 CCCACCTCCCACTCTAAGATG 59.235 57.143 0.00 0.00 0.00 2.90
3251 3629 2.626950 CCCACCTCCCACTCTAAGATGA 60.627 54.545 0.00 0.00 0.00 2.92
3252 3630 3.312890 CCACCTCCCACTCTAAGATGAT 58.687 50.000 0.00 0.00 0.00 2.45
3253 3631 3.070734 CCACCTCCCACTCTAAGATGATG 59.929 52.174 0.00 0.00 0.00 3.07
3254 3632 3.070734 CACCTCCCACTCTAAGATGATGG 59.929 52.174 0.00 0.00 0.00 3.51
3257 3635 2.412591 CCCACTCTAAGATGATGGGGT 58.587 52.381 0.00 0.00 45.46 4.95
3258 3636 3.587498 CCCACTCTAAGATGATGGGGTA 58.413 50.000 0.00 0.00 45.46 3.69
3259 3637 3.580458 CCCACTCTAAGATGATGGGGTAG 59.420 52.174 0.00 0.00 45.46 3.18
3260 3638 3.007398 CCACTCTAAGATGATGGGGTAGC 59.993 52.174 0.00 0.00 0.00 3.58
3261 3639 3.007398 CACTCTAAGATGATGGGGTAGCC 59.993 52.174 1.07 1.07 0.00 3.93
3262 3640 2.569404 CTCTAAGATGATGGGGTAGCCC 59.431 54.545 23.81 23.81 44.51 5.19
3263 3641 2.182312 TCTAAGATGATGGGGTAGCCCT 59.818 50.000 29.64 15.83 44.66 5.19
3264 3642 1.439543 AAGATGATGGGGTAGCCCTC 58.560 55.000 29.64 22.78 44.66 4.30
3265 3643 0.474660 AGATGATGGGGTAGCCCTCC 60.475 60.000 29.64 20.59 44.66 4.30
3266 3644 1.831652 GATGATGGGGTAGCCCTCCG 61.832 65.000 29.64 0.00 44.66 4.63
3267 3645 3.242291 GATGGGGTAGCCCTCCGG 61.242 72.222 29.64 0.00 44.66 5.14
3285 3663 2.202810 CGAGCCGCTTCCTTCTCC 60.203 66.667 0.00 0.00 0.00 3.71
3286 3664 2.716017 CGAGCCGCTTCCTTCTCCT 61.716 63.158 0.00 0.00 0.00 3.69
3287 3665 1.599576 GAGCCGCTTCCTTCTCCTT 59.400 57.895 0.00 0.00 0.00 3.36
3288 3666 0.461163 GAGCCGCTTCCTTCTCCTTC 60.461 60.000 0.00 0.00 0.00 3.46
3289 3667 1.450491 GCCGCTTCCTTCTCCTTCC 60.450 63.158 0.00 0.00 0.00 3.46
3290 3668 1.904990 GCCGCTTCCTTCTCCTTCCT 61.905 60.000 0.00 0.00 0.00 3.36
3291 3669 0.615850 CCGCTTCCTTCTCCTTCCTT 59.384 55.000 0.00 0.00 0.00 3.36
3292 3670 1.406205 CCGCTTCCTTCTCCTTCCTTC 60.406 57.143 0.00 0.00 0.00 3.46
3293 3671 1.406205 CGCTTCCTTCTCCTTCCTTCC 60.406 57.143 0.00 0.00 0.00 3.46
3294 3672 1.065053 GCTTCCTTCTCCTTCCTTCCC 60.065 57.143 0.00 0.00 0.00 3.97
3295 3673 2.556766 CTTCCTTCTCCTTCCTTCCCT 58.443 52.381 0.00 0.00 0.00 4.20
3296 3674 2.255770 TCCTTCTCCTTCCTTCCCTC 57.744 55.000 0.00 0.00 0.00 4.30
3297 3675 1.208706 CCTTCTCCTTCCTTCCCTCC 58.791 60.000 0.00 0.00 0.00 4.30
3298 3676 1.555765 CCTTCTCCTTCCTTCCCTCCA 60.556 57.143 0.00 0.00 0.00 3.86
3299 3677 1.836802 CTTCTCCTTCCTTCCCTCCAG 59.163 57.143 0.00 0.00 0.00 3.86
3300 3678 0.618968 TCTCCTTCCTTCCCTCCAGC 60.619 60.000 0.00 0.00 0.00 4.85
3301 3679 1.616628 TCCTTCCTTCCCTCCAGCC 60.617 63.158 0.00 0.00 0.00 4.85
3302 3680 1.925455 CCTTCCTTCCCTCCAGCCA 60.925 63.158 0.00 0.00 0.00 4.75
3303 3681 1.301293 CTTCCTTCCCTCCAGCCAC 59.699 63.158 0.00 0.00 0.00 5.01
3304 3682 2.203549 CTTCCTTCCCTCCAGCCACC 62.204 65.000 0.00 0.00 0.00 4.61
3305 3683 2.612115 CCTTCCCTCCAGCCACCT 60.612 66.667 0.00 0.00 0.00 4.00
3306 3684 2.234296 CCTTCCCTCCAGCCACCTT 61.234 63.158 0.00 0.00 0.00 3.50
3307 3685 1.301293 CTTCCCTCCAGCCACCTTC 59.699 63.158 0.00 0.00 0.00 3.46
3308 3686 2.203549 CTTCCCTCCAGCCACCTTCC 62.204 65.000 0.00 0.00 0.00 3.46
3309 3687 2.612115 CCCTCCAGCCACCTTCCT 60.612 66.667 0.00 0.00 0.00 3.36
3310 3688 2.234296 CCCTCCAGCCACCTTCCTT 61.234 63.158 0.00 0.00 0.00 3.36
3311 3689 1.301293 CCTCCAGCCACCTTCCTTC 59.699 63.158 0.00 0.00 0.00 3.46
3312 3690 1.204113 CCTCCAGCCACCTTCCTTCT 61.204 60.000 0.00 0.00 0.00 2.85
3313 3691 0.251634 CTCCAGCCACCTTCCTTCTC 59.748 60.000 0.00 0.00 0.00 2.87
3314 3692 1.201429 TCCAGCCACCTTCCTTCTCC 61.201 60.000 0.00 0.00 0.00 3.71
3315 3693 1.204113 CCAGCCACCTTCCTTCTCCT 61.204 60.000 0.00 0.00 0.00 3.69
3316 3694 0.695347 CAGCCACCTTCCTTCTCCTT 59.305 55.000 0.00 0.00 0.00 3.36
3317 3695 0.988063 AGCCACCTTCCTTCTCCTTC 59.012 55.000 0.00 0.00 0.00 3.46
3318 3696 0.034960 GCCACCTTCCTTCTCCTTCC 60.035 60.000 0.00 0.00 0.00 3.46
3319 3697 1.662686 CCACCTTCCTTCTCCTTCCT 58.337 55.000 0.00 0.00 0.00 3.36
3320 3698 1.988846 CCACCTTCCTTCTCCTTCCTT 59.011 52.381 0.00 0.00 0.00 3.36
3321 3699 2.026729 CCACCTTCCTTCTCCTTCCTTC 60.027 54.545 0.00 0.00 0.00 3.46
3322 3700 2.026729 CACCTTCCTTCTCCTTCCTTCC 60.027 54.545 0.00 0.00 0.00 3.46
3323 3701 2.157926 ACCTTCCTTCTCCTTCCTTCCT 60.158 50.000 0.00 0.00 0.00 3.36
3324 3702 2.916269 CCTTCCTTCTCCTTCCTTCCTT 59.084 50.000 0.00 0.00 0.00 3.36
3325 3703 3.054728 CCTTCCTTCTCCTTCCTTCCTTC 60.055 52.174 0.00 0.00 0.00 3.46
3326 3704 3.275848 TCCTTCTCCTTCCTTCCTTCA 57.724 47.619 0.00 0.00 0.00 3.02
3327 3705 3.598264 TCCTTCTCCTTCCTTCCTTCAA 58.402 45.455 0.00 0.00 0.00 2.69
3328 3706 3.980698 TCCTTCTCCTTCCTTCCTTCAAA 59.019 43.478 0.00 0.00 0.00 2.69
3329 3707 4.415512 TCCTTCTCCTTCCTTCCTTCAAAA 59.584 41.667 0.00 0.00 0.00 2.44
3330 3708 5.075067 TCCTTCTCCTTCCTTCCTTCAAAAT 59.925 40.000 0.00 0.00 0.00 1.82
3331 3709 5.417266 CCTTCTCCTTCCTTCCTTCAAAATC 59.583 44.000 0.00 0.00 0.00 2.17
3332 3710 4.579869 TCTCCTTCCTTCCTTCAAAATCG 58.420 43.478 0.00 0.00 0.00 3.34
3333 3711 4.286032 TCTCCTTCCTTCCTTCAAAATCGA 59.714 41.667 0.00 0.00 0.00 3.59
3334 3712 4.324267 TCCTTCCTTCCTTCAAAATCGAC 58.676 43.478 0.00 0.00 0.00 4.20
3335 3713 4.041691 TCCTTCCTTCCTTCAAAATCGACT 59.958 41.667 0.00 0.00 0.00 4.18
3336 3714 5.247564 TCCTTCCTTCCTTCAAAATCGACTA 59.752 40.000 0.00 0.00 0.00 2.59
3337 3715 5.938125 CCTTCCTTCCTTCAAAATCGACTAA 59.062 40.000 0.00 0.00 0.00 2.24
3338 3716 6.128254 CCTTCCTTCCTTCAAAATCGACTAAC 60.128 42.308 0.00 0.00 0.00 2.34
3339 3717 5.243207 TCCTTCCTTCAAAATCGACTAACC 58.757 41.667 0.00 0.00 0.00 2.85
3340 3718 5.001232 CCTTCCTTCAAAATCGACTAACCA 58.999 41.667 0.00 0.00 0.00 3.67
3341 3719 5.106673 CCTTCCTTCAAAATCGACTAACCAC 60.107 44.000 0.00 0.00 0.00 4.16
3342 3720 4.963373 TCCTTCAAAATCGACTAACCACA 58.037 39.130 0.00 0.00 0.00 4.17
3343 3721 5.369833 TCCTTCAAAATCGACTAACCACAA 58.630 37.500 0.00 0.00 0.00 3.33
3344 3722 5.823570 TCCTTCAAAATCGACTAACCACAAA 59.176 36.000 0.00 0.00 0.00 2.83
3345 3723 6.488683 TCCTTCAAAATCGACTAACCACAAAT 59.511 34.615 0.00 0.00 0.00 2.32
3346 3724 7.662258 TCCTTCAAAATCGACTAACCACAAATA 59.338 33.333 0.00 0.00 0.00 1.40
3347 3725 7.962918 CCTTCAAAATCGACTAACCACAAATAG 59.037 37.037 0.00 0.00 0.00 1.73
3348 3726 6.837992 TCAAAATCGACTAACCACAAATAGC 58.162 36.000 0.00 0.00 0.00 2.97
3349 3727 6.653320 TCAAAATCGACTAACCACAAATAGCT 59.347 34.615 0.00 0.00 0.00 3.32
3350 3728 7.820386 TCAAAATCGACTAACCACAAATAGCTA 59.180 33.333 0.00 0.00 0.00 3.32
3351 3729 8.447833 CAAAATCGACTAACCACAAATAGCTAA 58.552 33.333 0.00 0.00 0.00 3.09
3352 3730 8.556213 AAATCGACTAACCACAAATAGCTAAA 57.444 30.769 0.00 0.00 0.00 1.85
3353 3731 7.772332 ATCGACTAACCACAAATAGCTAAAG 57.228 36.000 0.00 0.00 0.00 1.85
3354 3732 6.694447 TCGACTAACCACAAATAGCTAAAGT 58.306 36.000 0.00 0.00 0.00 2.66
3355 3733 6.810182 TCGACTAACCACAAATAGCTAAAGTC 59.190 38.462 0.00 0.06 0.00 3.01
3356 3734 6.588756 CGACTAACCACAAATAGCTAAAGTCA 59.411 38.462 0.00 0.00 32.03 3.41
3357 3735 7.201444 CGACTAACCACAAATAGCTAAAGTCAG 60.201 40.741 0.00 0.00 32.03 3.51
3358 3736 7.450903 ACTAACCACAAATAGCTAAAGTCAGT 58.549 34.615 0.00 0.00 0.00 3.41
3359 3737 6.803154 AACCACAAATAGCTAAAGTCAGTC 57.197 37.500 0.00 0.00 0.00 3.51
3360 3738 5.865085 ACCACAAATAGCTAAAGTCAGTCA 58.135 37.500 0.00 0.00 0.00 3.41
3361 3739 6.296026 ACCACAAATAGCTAAAGTCAGTCAA 58.704 36.000 0.00 0.00 0.00 3.18
3362 3740 6.204882 ACCACAAATAGCTAAAGTCAGTCAAC 59.795 38.462 0.00 0.00 0.00 3.18
3363 3741 6.428159 CCACAAATAGCTAAAGTCAGTCAACT 59.572 38.462 0.00 0.00 0.00 3.16
3364 3742 7.293745 CACAAATAGCTAAAGTCAGTCAACTG 58.706 38.462 0.00 3.69 45.08 3.16
3379 3757 7.369803 CAGTCAACTGACATTTAGCTATTGT 57.630 36.000 12.20 9.03 46.59 2.71
3380 3758 7.239271 CAGTCAACTGACATTTAGCTATTGTG 58.761 38.462 13.01 6.75 46.59 3.33
3381 3759 7.095060 CAGTCAACTGACATTTAGCTATTGTGT 60.095 37.037 13.01 9.50 46.59 3.72
3382 3760 7.584987 GTCAACTGACATTTAGCTATTGTGTT 58.415 34.615 13.01 9.61 44.18 3.32
3383 3761 7.746475 GTCAACTGACATTTAGCTATTGTGTTC 59.254 37.037 13.01 2.43 44.18 3.18
3384 3762 7.661437 TCAACTGACATTTAGCTATTGTGTTCT 59.339 33.333 13.01 0.00 0.00 3.01
3385 3763 7.369803 ACTGACATTTAGCTATTGTGTTCTG 57.630 36.000 13.01 7.02 0.00 3.02
3386 3764 6.936900 ACTGACATTTAGCTATTGTGTTCTGT 59.063 34.615 13.01 7.49 0.00 3.41
3387 3765 7.445402 ACTGACATTTAGCTATTGTGTTCTGTT 59.555 33.333 13.01 0.00 0.00 3.16
3388 3766 8.165239 TGACATTTAGCTATTGTGTTCTGTTT 57.835 30.769 13.01 0.00 0.00 2.83
3389 3767 8.629158 TGACATTTAGCTATTGTGTTCTGTTTT 58.371 29.630 13.01 0.00 0.00 2.43
3397 3775 9.630098 AGCTATTGTGTTCTGTTTTATTTCATG 57.370 29.630 0.00 0.00 0.00 3.07
3398 3776 8.863049 GCTATTGTGTTCTGTTTTATTTCATGG 58.137 33.333 0.00 0.00 0.00 3.66
3399 3777 9.912634 CTATTGTGTTCTGTTTTATTTCATGGT 57.087 29.630 0.00 0.00 0.00 3.55
3400 3778 8.592105 ATTGTGTTCTGTTTTATTTCATGGTG 57.408 30.769 0.00 0.00 0.00 4.17
3401 3779 7.106439 TGTGTTCTGTTTTATTTCATGGTGT 57.894 32.000 0.00 0.00 0.00 4.16
3402 3780 8.226819 TGTGTTCTGTTTTATTTCATGGTGTA 57.773 30.769 0.00 0.00 0.00 2.90
3403 3781 8.687242 TGTGTTCTGTTTTATTTCATGGTGTAA 58.313 29.630 0.00 0.00 0.00 2.41
3404 3782 9.180678 GTGTTCTGTTTTATTTCATGGTGTAAG 57.819 33.333 0.00 0.00 0.00 2.34
3405 3783 9.126151 TGTTCTGTTTTATTTCATGGTGTAAGA 57.874 29.630 0.00 0.00 0.00 2.10
3408 3786 9.513906 TCTGTTTTATTTCATGGTGTAAGATGA 57.486 29.630 0.00 0.00 0.00 2.92
3413 3791 9.473007 TTTATTTCATGGTGTAAGATGATTGGA 57.527 29.630 0.00 0.00 0.00 3.53
3414 3792 7.959658 ATTTCATGGTGTAAGATGATTGGAA 57.040 32.000 0.00 0.00 0.00 3.53
3415 3793 7.773489 TTTCATGGTGTAAGATGATTGGAAA 57.227 32.000 0.00 0.00 0.00 3.13
3416 3794 7.773489 TTCATGGTGTAAGATGATTGGAAAA 57.227 32.000 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.541641 GTCTGCCTTCTCATCTTAAACATGAT 59.458 38.462 0.00 0.00 29.78 2.45
2 3 5.645067 TGTCTGCCTTCTCATCTTAAACATG 59.355 40.000 0.00 0.00 0.00 3.21
4 5 5.227569 TGTCTGCCTTCTCATCTTAAACA 57.772 39.130 0.00 0.00 0.00 2.83
5 6 5.703130 AGTTGTCTGCCTTCTCATCTTAAAC 59.297 40.000 0.00 0.00 0.00 2.01
6 7 5.869579 AGTTGTCTGCCTTCTCATCTTAAA 58.130 37.500 0.00 0.00 0.00 1.52
89 92 2.052782 AATGCCCGGACCTATCAAAC 57.947 50.000 0.73 0.00 0.00 2.93
156 164 1.148310 CTCACGGTTTGCACCTAGTG 58.852 55.000 0.00 0.00 41.64 2.74
178 186 0.741915 GTTTCAGGTTGGGTTTCGCA 59.258 50.000 0.00 0.00 0.00 5.10
181 189 2.547855 GCATGGTTTCAGGTTGGGTTTC 60.548 50.000 0.00 0.00 0.00 2.78
189 197 3.167485 ACATTGATGCATGGTTTCAGGT 58.833 40.909 2.46 0.00 0.00 4.00
192 200 4.755629 CCAAAACATTGATGCATGGTTTCA 59.244 37.500 2.46 0.00 35.71 2.69
193 201 4.756135 ACCAAAACATTGATGCATGGTTTC 59.244 37.500 2.46 0.00 37.77 2.78
194 202 4.716794 ACCAAAACATTGATGCATGGTTT 58.283 34.783 2.46 6.73 37.77 3.27
195 203 4.354893 ACCAAAACATTGATGCATGGTT 57.645 36.364 2.46 0.00 37.77 3.67
196 204 4.354893 AACCAAAACATTGATGCATGGT 57.645 36.364 2.46 0.00 40.65 3.55
197 205 5.232626 CGATAACCAAAACATTGATGCATGG 59.767 40.000 2.46 0.00 35.47 3.66
198 206 6.035217 TCGATAACCAAAACATTGATGCATG 58.965 36.000 2.46 0.00 0.00 4.06
199 207 6.206395 TCGATAACCAAAACATTGATGCAT 57.794 33.333 0.00 0.00 0.00 3.96
200 208 5.635417 TCGATAACCAAAACATTGATGCA 57.365 34.783 0.00 0.00 0.00 3.96
201 209 7.379529 CCTATTCGATAACCAAAACATTGATGC 59.620 37.037 0.00 0.00 0.00 3.91
202 210 7.862372 CCCTATTCGATAACCAAAACATTGATG 59.138 37.037 0.00 0.00 0.00 3.07
203 211 7.470009 GCCCTATTCGATAACCAAAACATTGAT 60.470 37.037 0.00 0.00 0.00 2.57
204 212 6.183360 GCCCTATTCGATAACCAAAACATTGA 60.183 38.462 0.00 0.00 0.00 2.57
205 213 5.977129 GCCCTATTCGATAACCAAAACATTG 59.023 40.000 0.00 0.00 0.00 2.82
206 214 5.654650 TGCCCTATTCGATAACCAAAACATT 59.345 36.000 0.00 0.00 0.00 2.71
207 215 5.197451 TGCCCTATTCGATAACCAAAACAT 58.803 37.500 0.00 0.00 0.00 2.71
208 216 4.590918 TGCCCTATTCGATAACCAAAACA 58.409 39.130 0.00 0.00 0.00 2.83
209 217 5.767816 ATGCCCTATTCGATAACCAAAAC 57.232 39.130 0.00 0.00 0.00 2.43
210 218 6.783708 AAATGCCCTATTCGATAACCAAAA 57.216 33.333 0.00 0.00 0.00 2.44
211 219 6.783708 AAAATGCCCTATTCGATAACCAAA 57.216 33.333 0.00 0.00 0.00 3.28
212 220 6.783708 AAAAATGCCCTATTCGATAACCAA 57.216 33.333 0.00 0.00 0.00 3.67
213 221 7.057894 AGTAAAAATGCCCTATTCGATAACCA 58.942 34.615 0.00 0.00 0.00 3.67
214 222 7.227910 TGAGTAAAAATGCCCTATTCGATAACC 59.772 37.037 0.00 0.00 0.00 2.85
215 223 8.149973 TGAGTAAAAATGCCCTATTCGATAAC 57.850 34.615 0.00 0.00 0.00 1.89
216 224 7.444183 CCTGAGTAAAAATGCCCTATTCGATAA 59.556 37.037 0.00 0.00 0.00 1.75
217 225 6.934645 CCTGAGTAAAAATGCCCTATTCGATA 59.065 38.462 0.00 0.00 0.00 2.92
218 226 5.765182 CCTGAGTAAAAATGCCCTATTCGAT 59.235 40.000 0.00 0.00 0.00 3.59
219 227 5.123227 CCTGAGTAAAAATGCCCTATTCGA 58.877 41.667 0.00 0.00 0.00 3.71
220 228 4.275936 CCCTGAGTAAAAATGCCCTATTCG 59.724 45.833 0.00 0.00 0.00 3.34
221 229 4.584743 CCCCTGAGTAAAAATGCCCTATTC 59.415 45.833 0.00 0.00 0.00 1.75
222 230 4.546674 CCCCTGAGTAAAAATGCCCTATT 58.453 43.478 0.00 0.00 0.00 1.73
223 231 3.117131 CCCCCTGAGTAAAAATGCCCTAT 60.117 47.826 0.00 0.00 0.00 2.57
224 232 2.243736 CCCCCTGAGTAAAAATGCCCTA 59.756 50.000 0.00 0.00 0.00 3.53
225 233 1.007118 CCCCCTGAGTAAAAATGCCCT 59.993 52.381 0.00 0.00 0.00 5.19
226 234 1.485124 CCCCCTGAGTAAAAATGCCC 58.515 55.000 0.00 0.00 0.00 5.36
227 235 0.824109 GCCCCCTGAGTAAAAATGCC 59.176 55.000 0.00 0.00 0.00 4.40
228 236 1.478105 CTGCCCCCTGAGTAAAAATGC 59.522 52.381 0.00 0.00 0.00 3.56
229 237 2.807676 ACTGCCCCCTGAGTAAAAATG 58.192 47.619 0.00 0.00 0.00 2.32
230 238 4.668138 TTACTGCCCCCTGAGTAAAAAT 57.332 40.909 0.00 0.00 32.86 1.82
231 239 4.146564 GTTTACTGCCCCCTGAGTAAAAA 58.853 43.478 0.00 0.00 43.08 1.94
232 240 3.758425 GTTTACTGCCCCCTGAGTAAAA 58.242 45.455 0.00 0.00 43.08 1.52
233 241 2.289819 CGTTTACTGCCCCCTGAGTAAA 60.290 50.000 0.00 0.00 40.63 2.01
234 242 1.276989 CGTTTACTGCCCCCTGAGTAA 59.723 52.381 0.00 0.00 33.74 2.24
235 243 0.899720 CGTTTACTGCCCCCTGAGTA 59.100 55.000 0.00 0.00 0.00 2.59
236 244 1.125711 ACGTTTACTGCCCCCTGAGT 61.126 55.000 0.00 0.00 0.00 3.41
237 245 0.899720 TACGTTTACTGCCCCCTGAG 59.100 55.000 0.00 0.00 0.00 3.35
238 246 0.899720 CTACGTTTACTGCCCCCTGA 59.100 55.000 0.00 0.00 0.00 3.86
239 247 0.611714 ACTACGTTTACTGCCCCCTG 59.388 55.000 0.00 0.00 0.00 4.45
240 248 1.355112 AACTACGTTTACTGCCCCCT 58.645 50.000 0.00 0.00 0.00 4.79
241 249 2.621338 GTAACTACGTTTACTGCCCCC 58.379 52.381 0.00 0.00 0.00 5.40
242 250 2.028203 TGGTAACTACGTTTACTGCCCC 60.028 50.000 9.39 0.00 33.21 5.80
243 251 3.317603 TGGTAACTACGTTTACTGCCC 57.682 47.619 9.39 0.00 33.21 5.36
244 252 3.619929 CCATGGTAACTACGTTTACTGCC 59.380 47.826 2.57 0.00 33.21 4.85
245 253 4.248058 ACCATGGTAACTACGTTTACTGC 58.752 43.478 18.10 0.00 33.21 4.40
246 254 6.311200 GGTAACCATGGTAACTACGTTTACTG 59.689 42.308 20.12 2.52 33.21 2.74
247 255 6.398095 GGTAACCATGGTAACTACGTTTACT 58.602 40.000 20.12 0.00 33.21 2.24
248 256 5.288472 CGGTAACCATGGTAACTACGTTTAC 59.712 44.000 20.12 12.98 37.61 2.01
249 257 5.184096 TCGGTAACCATGGTAACTACGTTTA 59.816 40.000 20.12 0.00 37.61 2.01
250 258 4.021544 TCGGTAACCATGGTAACTACGTTT 60.022 41.667 20.12 0.84 37.61 3.60
251 259 3.509575 TCGGTAACCATGGTAACTACGTT 59.490 43.478 20.12 1.68 37.61 3.99
252 260 3.088532 TCGGTAACCATGGTAACTACGT 58.911 45.455 20.12 2.54 37.61 3.57
253 261 3.378112 TCTCGGTAACCATGGTAACTACG 59.622 47.826 20.12 17.78 37.61 3.51
254 262 4.989279 TCTCGGTAACCATGGTAACTAC 57.011 45.455 20.12 16.68 37.61 2.73
255 263 5.999205 TTTCTCGGTAACCATGGTAACTA 57.001 39.130 20.12 3.93 37.61 2.24
256 264 4.895668 TTTCTCGGTAACCATGGTAACT 57.104 40.909 20.12 5.12 37.61 2.24
257 265 6.987992 TGATATTTCTCGGTAACCATGGTAAC 59.012 38.462 20.12 10.49 0.00 2.50
258 266 7.127012 TGATATTTCTCGGTAACCATGGTAA 57.873 36.000 20.12 6.35 0.00 2.85
259 267 6.734502 TGATATTTCTCGGTAACCATGGTA 57.265 37.500 20.12 0.00 0.00 3.25
260 268 5.623956 TGATATTTCTCGGTAACCATGGT 57.376 39.130 13.00 13.00 0.00 3.55
261 269 6.288294 TCTTGATATTTCTCGGTAACCATGG 58.712 40.000 11.19 11.19 0.00 3.66
262 270 7.786178 TTCTTGATATTTCTCGGTAACCATG 57.214 36.000 0.00 0.00 0.00 3.66
315 323 8.572185 TCCGTTCATTCACTTATTTGAATTCAA 58.428 29.630 16.91 16.91 42.45 2.69
316 324 8.020819 GTCCGTTCATTCACTTATTTGAATTCA 58.979 33.333 3.38 3.38 42.45 2.57
317 325 8.020819 TGTCCGTTCATTCACTTATTTGAATTC 58.979 33.333 0.00 0.00 42.45 2.17
318 326 7.881142 TGTCCGTTCATTCACTTATTTGAATT 58.119 30.769 0.00 0.00 42.45 2.17
319 327 7.447374 TGTCCGTTCATTCACTTATTTGAAT 57.553 32.000 0.00 0.00 45.32 2.57
320 328 6.869315 TGTCCGTTCATTCACTTATTTGAA 57.131 33.333 0.00 0.00 39.79 2.69
321 329 7.447374 AATGTCCGTTCATTCACTTATTTGA 57.553 32.000 0.00 0.00 33.43 2.69
332 340 4.141287 TCTGGTTTGAATGTCCGTTCATT 58.859 39.130 2.96 2.68 37.88 2.57
333 341 3.750371 TCTGGTTTGAATGTCCGTTCAT 58.250 40.909 2.96 0.00 37.88 2.57
334 342 3.138304 CTCTGGTTTGAATGTCCGTTCA 58.862 45.455 0.00 0.00 36.38 3.18
335 343 3.186613 GTCTCTGGTTTGAATGTCCGTTC 59.813 47.826 0.00 0.00 0.00 3.95
336 344 3.139077 GTCTCTGGTTTGAATGTCCGTT 58.861 45.455 0.00 0.00 0.00 4.44
337 345 2.550208 GGTCTCTGGTTTGAATGTCCGT 60.550 50.000 0.00 0.00 0.00 4.69
338 346 2.076863 GGTCTCTGGTTTGAATGTCCG 58.923 52.381 0.00 0.00 0.00 4.79
339 347 3.425162 AGGTCTCTGGTTTGAATGTCC 57.575 47.619 0.00 0.00 0.00 4.02
340 348 4.821805 TGAAAGGTCTCTGGTTTGAATGTC 59.178 41.667 0.00 0.00 0.00 3.06
341 349 4.792068 TGAAAGGTCTCTGGTTTGAATGT 58.208 39.130 0.00 0.00 0.00 2.71
342 350 5.772825 TTGAAAGGTCTCTGGTTTGAATG 57.227 39.130 0.00 0.00 0.00 2.67
343 351 6.154363 TGTTTTGAAAGGTCTCTGGTTTGAAT 59.846 34.615 0.00 0.00 0.00 2.57
344 352 5.478679 TGTTTTGAAAGGTCTCTGGTTTGAA 59.521 36.000 0.00 0.00 0.00 2.69
345 353 5.013547 TGTTTTGAAAGGTCTCTGGTTTGA 58.986 37.500 0.00 0.00 0.00 2.69
346 354 5.323371 TGTTTTGAAAGGTCTCTGGTTTG 57.677 39.130 0.00 0.00 0.00 2.93
347 355 4.402474 CCTGTTTTGAAAGGTCTCTGGTTT 59.598 41.667 0.00 0.00 0.00 3.27
348 356 3.954258 CCTGTTTTGAAAGGTCTCTGGTT 59.046 43.478 0.00 0.00 0.00 3.67
349 357 3.202151 TCCTGTTTTGAAAGGTCTCTGGT 59.798 43.478 0.00 0.00 34.94 4.00
350 358 3.817647 CTCCTGTTTTGAAAGGTCTCTGG 59.182 47.826 0.00 0.00 34.94 3.86
351 359 3.251972 GCTCCTGTTTTGAAAGGTCTCTG 59.748 47.826 0.00 0.00 34.94 3.35
352 360 3.137360 AGCTCCTGTTTTGAAAGGTCTCT 59.863 43.478 0.00 0.00 34.94 3.10
353 361 3.481453 AGCTCCTGTTTTGAAAGGTCTC 58.519 45.455 0.00 0.00 34.94 3.36
354 362 3.584733 AGCTCCTGTTTTGAAAGGTCT 57.415 42.857 0.00 0.00 34.94 3.85
355 363 3.189495 GCTAGCTCCTGTTTTGAAAGGTC 59.811 47.826 7.70 0.00 34.94 3.85
356 364 3.149981 GCTAGCTCCTGTTTTGAAAGGT 58.850 45.455 7.70 0.00 34.94 3.50
357 365 3.416156 AGCTAGCTCCTGTTTTGAAAGG 58.584 45.455 12.68 0.00 34.65 3.11
358 366 4.276926 ACAAGCTAGCTCCTGTTTTGAAAG 59.723 41.667 19.65 0.00 0.00 2.62
359 367 4.207165 ACAAGCTAGCTCCTGTTTTGAAA 58.793 39.130 19.65 0.00 0.00 2.69
360 368 3.820557 ACAAGCTAGCTCCTGTTTTGAA 58.179 40.909 19.65 0.00 0.00 2.69
361 369 3.492102 ACAAGCTAGCTCCTGTTTTGA 57.508 42.857 19.65 0.00 0.00 2.69
362 370 3.854784 GCAACAAGCTAGCTCCTGTTTTG 60.855 47.826 25.37 19.13 41.15 2.44
363 371 2.294512 GCAACAAGCTAGCTCCTGTTTT 59.705 45.455 25.37 9.34 41.15 2.43
364 372 1.882623 GCAACAAGCTAGCTCCTGTTT 59.117 47.619 25.37 12.75 41.15 2.83
365 373 1.528129 GCAACAAGCTAGCTCCTGTT 58.472 50.000 23.22 23.22 41.15 3.16
366 374 3.239861 GCAACAAGCTAGCTCCTGT 57.760 52.632 19.65 16.95 41.15 4.00
377 385 3.120649 GGTTCTAGCGTGTAAGCAACAAG 60.121 47.826 1.66 1.66 40.63 3.16
378 386 2.803956 GGTTCTAGCGTGTAAGCAACAA 59.196 45.455 0.00 0.00 40.63 2.83
379 387 2.224090 TGGTTCTAGCGTGTAAGCAACA 60.224 45.455 0.00 0.00 40.15 3.33
380 388 2.409975 TGGTTCTAGCGTGTAAGCAAC 58.590 47.619 0.00 0.00 40.15 4.17
381 389 2.683968 CTGGTTCTAGCGTGTAAGCAA 58.316 47.619 0.00 0.00 40.15 3.91
382 390 1.671850 GCTGGTTCTAGCGTGTAAGCA 60.672 52.381 0.00 0.00 40.15 3.91
383 391 1.000145 GCTGGTTCTAGCGTGTAAGC 59.000 55.000 0.00 0.00 33.46 3.09
391 399 1.809651 GCCATGAGAGCTGGTTCTAGC 60.810 57.143 0.00 0.00 44.01 3.42
392 400 1.483827 TGCCATGAGAGCTGGTTCTAG 59.516 52.381 0.00 0.00 36.10 2.43
393 401 1.571955 TGCCATGAGAGCTGGTTCTA 58.428 50.000 0.00 0.00 36.10 2.10
394 402 0.917533 ATGCCATGAGAGCTGGTTCT 59.082 50.000 0.00 0.00 36.10 3.01
395 403 1.760192 AATGCCATGAGAGCTGGTTC 58.240 50.000 0.00 0.00 36.10 3.62
396 404 3.370840 TTAATGCCATGAGAGCTGGTT 57.629 42.857 0.00 0.00 36.10 3.67
397 405 3.589951 ATTAATGCCATGAGAGCTGGT 57.410 42.857 0.00 0.00 36.10 4.00
398 406 4.340097 TGAAATTAATGCCATGAGAGCTGG 59.660 41.667 0.00 0.00 36.81 4.85
399 407 5.509716 TGAAATTAATGCCATGAGAGCTG 57.490 39.130 0.00 0.00 0.00 4.24
400 408 5.243283 GGATGAAATTAATGCCATGAGAGCT 59.757 40.000 0.00 0.00 0.00 4.09
401 409 5.243283 AGGATGAAATTAATGCCATGAGAGC 59.757 40.000 0.00 0.00 0.00 4.09
402 410 6.896021 AGGATGAAATTAATGCCATGAGAG 57.104 37.500 0.00 0.00 0.00 3.20
403 411 6.427853 CGTAGGATGAAATTAATGCCATGAGA 59.572 38.462 0.00 0.00 0.00 3.27
404 412 6.205464 ACGTAGGATGAAATTAATGCCATGAG 59.795 38.462 0.00 0.00 0.00 2.90
405 413 6.061441 ACGTAGGATGAAATTAATGCCATGA 58.939 36.000 0.00 0.00 0.00 3.07
406 414 6.317789 ACGTAGGATGAAATTAATGCCATG 57.682 37.500 7.36 0.00 0.00 3.66
407 415 7.224297 AGTACGTAGGATGAAATTAATGCCAT 58.776 34.615 0.00 3.34 0.00 4.40
408 416 6.588204 AGTACGTAGGATGAAATTAATGCCA 58.412 36.000 0.00 0.00 0.00 4.92
409 417 7.492352 AAGTACGTAGGATGAAATTAATGCC 57.508 36.000 0.00 0.00 0.00 4.40
410 418 9.859692 GTAAAGTACGTAGGATGAAATTAATGC 57.140 33.333 0.00 0.00 0.00 3.56
472 480 4.363991 AAATGCCCATACCAAGCAAAAA 57.636 36.364 0.00 0.00 40.46 1.94
473 481 4.323104 GGTAAATGCCCATACCAAGCAAAA 60.323 41.667 4.54 0.00 41.05 2.44
474 482 3.196685 GGTAAATGCCCATACCAAGCAAA 59.803 43.478 4.54 0.00 41.05 3.68
475 483 2.763448 GGTAAATGCCCATACCAAGCAA 59.237 45.455 4.54 0.00 41.05 3.91
476 484 2.383855 GGTAAATGCCCATACCAAGCA 58.616 47.619 4.54 0.00 41.05 3.91
477 485 1.336755 CGGTAAATGCCCATACCAAGC 59.663 52.381 8.94 0.00 41.37 4.01
478 486 2.878406 CTCGGTAAATGCCCATACCAAG 59.122 50.000 8.94 0.00 41.37 3.61
479 487 2.422235 CCTCGGTAAATGCCCATACCAA 60.422 50.000 8.94 0.00 41.37 3.67
480 488 1.142060 CCTCGGTAAATGCCCATACCA 59.858 52.381 8.94 0.00 41.37 3.25
481 489 1.544759 CCCTCGGTAAATGCCCATACC 60.545 57.143 0.00 0.00 38.55 2.73
482 490 1.544759 CCCCTCGGTAAATGCCCATAC 60.545 57.143 0.00 0.00 0.00 2.39
483 491 0.768622 CCCCTCGGTAAATGCCCATA 59.231 55.000 0.00 0.00 0.00 2.74
484 492 1.536676 CCCCTCGGTAAATGCCCAT 59.463 57.895 0.00 0.00 0.00 4.00
485 493 3.003230 CCCCTCGGTAAATGCCCA 58.997 61.111 0.00 0.00 0.00 5.36
486 494 2.518587 GCCCCTCGGTAAATGCCC 60.519 66.667 0.00 0.00 0.00 5.36
487 495 2.119029 GTGCCCCTCGGTAAATGCC 61.119 63.158 0.00 0.00 0.00 4.40
488 496 2.119029 GGTGCCCCTCGGTAAATGC 61.119 63.158 0.00 0.00 0.00 3.56
489 497 1.817941 CGGTGCCCCTCGGTAAATG 60.818 63.158 0.00 0.00 0.00 2.32
490 498 1.968050 CTCGGTGCCCCTCGGTAAAT 61.968 60.000 0.00 0.00 0.00 1.40
491 499 2.604079 TCGGTGCCCCTCGGTAAA 60.604 61.111 0.00 0.00 0.00 2.01
492 500 2.497792 TACTCGGTGCCCCTCGGTAA 62.498 60.000 0.00 0.00 0.00 2.85
493 501 2.982643 TACTCGGTGCCCCTCGGTA 61.983 63.158 0.00 0.00 0.00 4.02
494 502 4.371417 TACTCGGTGCCCCTCGGT 62.371 66.667 0.00 0.00 0.00 4.69
495 503 3.834799 GTACTCGGTGCCCCTCGG 61.835 72.222 0.00 0.00 0.00 4.63
496 504 4.189188 CGTACTCGGTGCCCCTCG 62.189 72.222 0.00 0.00 0.00 4.63
497 505 3.066814 ACGTACTCGGTGCCCCTC 61.067 66.667 0.00 0.00 41.85 4.30
498 506 3.379445 CACGTACTCGGTGCCCCT 61.379 66.667 0.00 0.00 41.85 4.79
499 507 4.446413 CCACGTACTCGGTGCCCC 62.446 72.222 0.00 0.00 41.85 5.80
500 508 1.876497 TTACCACGTACTCGGTGCCC 61.876 60.000 12.12 0.00 41.85 5.36
501 509 0.733909 GTTACCACGTACTCGGTGCC 60.734 60.000 12.12 1.01 41.85 5.01
502 510 0.733909 GGTTACCACGTACTCGGTGC 60.734 60.000 12.12 6.07 41.85 5.01
503 511 0.597568 TGGTTACCACGTACTCGGTG 59.402 55.000 0.00 3.32 41.85 4.94
504 512 0.598065 GTGGTTACCACGTACTCGGT 59.402 55.000 19.33 8.04 44.95 4.69
505 513 3.406682 GTGGTTACCACGTACTCGG 57.593 57.895 19.33 0.00 44.95 4.63
514 522 8.485578 AATTTTAAGATTTCCTGTGGTTACCA 57.514 30.769 0.00 0.00 0.00 3.25
515 523 9.419297 GAAATTTTAAGATTTCCTGTGGTTACC 57.581 33.333 16.83 0.00 39.16 2.85
516 524 9.124807 CGAAATTTTAAGATTTCCTGTGGTTAC 57.875 33.333 20.08 0.00 41.02 2.50
517 525 9.069082 TCGAAATTTTAAGATTTCCTGTGGTTA 57.931 29.630 20.08 0.80 41.02 2.85
518 526 7.865889 GTCGAAATTTTAAGATTTCCTGTGGTT 59.134 33.333 20.08 0.00 41.02 3.67
519 527 7.368059 GTCGAAATTTTAAGATTTCCTGTGGT 58.632 34.615 20.08 0.00 41.02 4.16
520 528 6.806739 GGTCGAAATTTTAAGATTTCCTGTGG 59.193 38.462 20.08 9.95 41.02 4.17
521 529 6.523201 CGGTCGAAATTTTAAGATTTCCTGTG 59.477 38.462 20.08 10.22 41.02 3.66
522 530 6.349033 CCGGTCGAAATTTTAAGATTTCCTGT 60.349 38.462 20.08 0.00 41.02 4.00
523 531 6.027749 CCGGTCGAAATTTTAAGATTTCCTG 58.972 40.000 20.08 13.87 41.02 3.86
524 532 5.708697 ACCGGTCGAAATTTTAAGATTTCCT 59.291 36.000 20.08 0.00 41.02 3.36
525 533 5.946298 ACCGGTCGAAATTTTAAGATTTCC 58.054 37.500 20.08 10.26 41.02 3.13
526 534 7.482743 GGTTACCGGTCGAAATTTTAAGATTTC 59.517 37.037 12.40 17.42 40.80 2.17
527 535 7.040548 TGGTTACCGGTCGAAATTTTAAGATTT 60.041 33.333 12.40 3.75 32.16 2.17
528 536 6.430616 TGGTTACCGGTCGAAATTTTAAGATT 59.569 34.615 12.40 0.00 0.00 2.40
529 537 5.939296 TGGTTACCGGTCGAAATTTTAAGAT 59.061 36.000 12.40 0.00 0.00 2.40
530 538 5.303971 TGGTTACCGGTCGAAATTTTAAGA 58.696 37.500 12.40 0.00 0.00 2.10
531 539 5.610235 TGGTTACCGGTCGAAATTTTAAG 57.390 39.130 12.40 0.00 0.00 1.85
532 540 6.382869 TTTGGTTACCGGTCGAAATTTTAA 57.617 33.333 12.40 0.00 0.00 1.52
533 541 6.205071 GTTTTGGTTACCGGTCGAAATTTTA 58.795 36.000 12.40 0.00 0.00 1.52
534 542 4.915158 TTTGGTTACCGGTCGAAATTTT 57.085 36.364 12.40 0.00 0.00 1.82
535 543 4.499526 GGTTTTGGTTACCGGTCGAAATTT 60.500 41.667 12.40 0.00 0.00 1.82
536 544 3.004629 GGTTTTGGTTACCGGTCGAAATT 59.995 43.478 12.40 0.00 0.00 1.82
537 545 2.553602 GGTTTTGGTTACCGGTCGAAAT 59.446 45.455 12.40 0.00 0.00 2.17
538 546 1.946081 GGTTTTGGTTACCGGTCGAAA 59.054 47.619 12.40 6.74 0.00 3.46
539 547 1.140652 AGGTTTTGGTTACCGGTCGAA 59.859 47.619 12.40 0.00 40.69 3.71
540 548 0.758123 AGGTTTTGGTTACCGGTCGA 59.242 50.000 12.40 0.00 40.69 4.20
541 549 1.264826 CAAGGTTTTGGTTACCGGTCG 59.735 52.381 12.40 0.00 40.69 4.79
552 560 4.040217 TGGATCATGGTTTCCAAGGTTTTG 59.960 41.667 9.61 0.00 39.05 2.44
553 561 4.040339 GTGGATCATGGTTTCCAAGGTTTT 59.960 41.667 12.61 0.00 43.42 2.43
554 562 3.578282 GTGGATCATGGTTTCCAAGGTTT 59.422 43.478 12.61 0.00 43.42 3.27
555 563 3.165071 GTGGATCATGGTTTCCAAGGTT 58.835 45.455 12.61 0.00 43.42 3.50
556 564 2.807676 GTGGATCATGGTTTCCAAGGT 58.192 47.619 12.61 0.00 43.42 3.50
557 565 1.745087 CGTGGATCATGGTTTCCAAGG 59.255 52.381 12.61 6.43 43.42 3.61
558 566 1.745087 CCGTGGATCATGGTTTCCAAG 59.255 52.381 12.61 13.67 43.42 3.61
559 567 1.615651 CCCGTGGATCATGGTTTCCAA 60.616 52.381 12.61 0.00 43.42 3.53
560 568 0.034574 CCCGTGGATCATGGTTTCCA 60.035 55.000 8.36 8.36 38.76 3.53
561 569 1.384222 GCCCGTGGATCATGGTTTCC 61.384 60.000 5.55 0.00 38.76 3.13
562 570 0.679640 TGCCCGTGGATCATGGTTTC 60.680 55.000 5.55 0.00 38.76 2.78
572 580 0.324368 AGATAGAGTGTGCCCGTGGA 60.324 55.000 0.00 0.00 0.00 4.02
576 584 1.323412 AGCTAGATAGAGTGTGCCCG 58.677 55.000 0.00 0.00 0.00 6.13
604 612 0.887247 TCATTTGGTGTCGCATTGGG 59.113 50.000 0.00 0.00 0.00 4.12
648 656 2.774074 CACGAACGTGTGTTAAACTTGC 59.226 45.455 17.44 0.00 38.78 4.01
722 745 0.594602 CTGTCGGTTACGGAGTCACA 59.405 55.000 0.00 0.00 43.93 3.58
745 769 7.493320 GGATGTGGAGTACGTATTTGACATTTA 59.507 37.037 13.54 0.00 0.00 1.40
776 803 3.407698 TCCGTGTACAGTAGGTTTCGTA 58.592 45.455 0.00 0.00 0.00 3.43
808 845 1.053424 AGAAAAGGGCGTGGACACTA 58.947 50.000 0.56 0.00 0.00 2.74
819 856 4.357918 TCACCAGAGAAGAAGAAAAGGG 57.642 45.455 0.00 0.00 0.00 3.95
828 865 1.137675 CGGCATGATCACCAGAGAAGA 59.862 52.381 0.00 0.00 0.00 2.87
856 896 4.881019 ATAGACGGATTCTGCTTGCTAT 57.119 40.909 0.00 0.00 35.55 2.97
950 1011 2.701107 TGTGACCTCGAGTACTCTCTG 58.299 52.381 20.34 10.43 38.45 3.35
961 1022 4.371855 TTTCTAGCACTATGTGACCTCG 57.628 45.455 1.52 0.00 35.23 4.63
1020 1097 0.672401 CGTACACCGGCTTCACCATT 60.672 55.000 0.00 0.00 39.03 3.16
1056 1133 4.373116 GGCACCTTCTCGCCGACA 62.373 66.667 0.00 0.00 38.82 4.35
1149 1226 2.361992 TCCCTGAGCGCCTCGTTA 60.362 61.111 2.29 0.00 32.35 3.18
1442 1546 2.229543 TCAAATAAGCACTTGCAGCCAG 59.770 45.455 3.62 0.00 45.16 4.85
1474 1591 4.449068 CCGATGTTCTCCTGTATATGCAAC 59.551 45.833 0.00 0.00 0.00 4.17
1558 1680 3.289834 GTGTGGTGGTGGCAGCTG 61.290 66.667 18.53 10.11 0.00 4.24
1741 1863 1.655329 GTAGGCGTCTCCATCTCCG 59.345 63.158 0.00 0.00 37.29 4.63
1801 1934 1.662446 GACGAACTCGGCCGTGAAA 60.662 57.895 32.11 9.34 42.67 2.69
2123 2271 2.125912 CACTCCGCCGAAGTCCAG 60.126 66.667 0.00 0.00 0.00 3.86
2413 2562 4.227134 CCCTGGCGGGTCGATCAG 62.227 72.222 12.30 0.00 46.12 2.90
2475 2630 6.361297 TGTTTCGTAGTAATAAACGTGACG 57.639 37.500 2.24 2.24 39.99 4.35
2543 2728 3.820467 TCAAGTGCAGGTGATTTTACAGG 59.180 43.478 0.00 0.00 0.00 4.00
2634 2819 9.569167 AAAAAGGTTTTAAAGAAAGAGTTCTCG 57.431 29.630 0.00 0.00 43.59 4.04
2662 3024 6.031751 ACACTCCAACAACTAAGAGATCTC 57.968 41.667 15.29 15.29 0.00 2.75
2663 3025 5.777732 AGACACTCCAACAACTAAGAGATCT 59.222 40.000 0.00 0.00 0.00 2.75
2664 3026 6.031751 AGACACTCCAACAACTAAGAGATC 57.968 41.667 0.00 0.00 0.00 2.75
2665 3027 6.722129 AGTAGACACTCCAACAACTAAGAGAT 59.278 38.462 0.00 0.00 0.00 2.75
2666 3028 6.016192 CAGTAGACACTCCAACAACTAAGAGA 60.016 42.308 0.00 0.00 30.46 3.10
2669 3046 6.085555 TCAGTAGACACTCCAACAACTAAG 57.914 41.667 0.00 0.00 30.46 2.18
2672 3049 6.859112 ATATCAGTAGACACTCCAACAACT 57.141 37.500 0.00 0.00 30.46 3.16
2734 3112 5.575157 TCTAGCCATTCCCAAAACACAATA 58.425 37.500 0.00 0.00 0.00 1.90
2780 3158 1.365633 GTCTCCATAGCAGCCCTCG 59.634 63.158 0.00 0.00 0.00 4.63
2784 3162 3.386768 TTTATCGTCTCCATAGCAGCC 57.613 47.619 0.00 0.00 0.00 4.85
2794 3172 6.347483 GGAATCGGCCTTATTTTTATCGTCTC 60.347 42.308 0.00 0.00 0.00 3.36
2796 3174 5.334646 GGGAATCGGCCTTATTTTTATCGTC 60.335 44.000 0.00 0.00 0.00 4.20
2876 3254 0.597118 TGCAAACAACGCTGCAATCC 60.597 50.000 0.00 0.00 45.25 3.01
2884 3262 0.865639 GGCCGATATGCAAACAACGC 60.866 55.000 0.00 0.00 0.00 4.84
2887 3265 1.380403 CCCGGCCGATATGCAAACAA 61.380 55.000 30.73 0.00 0.00 2.83
2888 3266 1.821759 CCCGGCCGATATGCAAACA 60.822 57.895 30.73 0.00 0.00 2.83
2891 3269 1.525077 GTTCCCGGCCGATATGCAA 60.525 57.895 30.73 6.50 0.00 4.08
2914 3292 2.514592 CGAATCTGCCGGGCACAT 60.515 61.111 19.77 11.37 33.79 3.21
2927 3305 5.912892 AGTGACCCAAATTTGAAAACGAAT 58.087 33.333 19.86 0.00 0.00 3.34
2948 3326 0.038526 ACGGCTCAAAACGATCGAGT 60.039 50.000 24.34 6.14 0.00 4.18
2949 3327 1.068474 AACGGCTCAAAACGATCGAG 58.932 50.000 24.34 9.38 0.00 4.04
2962 3340 1.399714 TCGATCTACATCCAACGGCT 58.600 50.000 0.00 0.00 0.00 5.52
2966 3344 3.865745 CCACTGTTCGATCTACATCCAAC 59.134 47.826 0.00 0.00 32.34 3.77
3007 3385 1.202855 CCAGGGATGGTGATTAGCTGG 60.203 57.143 0.00 0.00 0.00 4.85
3017 3395 0.252696 TGCAGTAGTCCAGGGATGGT 60.253 55.000 0.00 0.00 0.00 3.55
3020 3398 1.330655 CGGTGCAGTAGTCCAGGGAT 61.331 60.000 0.00 0.00 0.00 3.85
3022 3400 1.330655 ATCGGTGCAGTAGTCCAGGG 61.331 60.000 0.00 0.00 0.00 4.45
3026 3404 1.589196 GCGATCGGTGCAGTAGTCC 60.589 63.158 18.30 0.00 0.00 3.85
3050 3428 3.248446 TAGTGGTGGCAGGCGGTTC 62.248 63.158 0.00 0.00 0.00 3.62
3104 3482 1.397413 GGTTAGGGGGAGGGTGGTA 59.603 63.158 0.00 0.00 0.00 3.25
3105 3483 2.126603 GGTTAGGGGGAGGGTGGT 59.873 66.667 0.00 0.00 0.00 4.16
3148 3526 0.990374 GATGCTAGAGGGATGGCCAT 59.010 55.000 20.96 20.96 35.15 4.40
3169 3547 1.401018 CGGAGAAAAACCGGTCATTGC 60.401 52.381 8.04 5.10 45.65 3.56
3170 3548 2.611974 CGGAGAAAAACCGGTCATTG 57.388 50.000 8.04 0.00 45.65 2.82
3191 3569 2.904866 GGCCGTGGTGCAAGTTCA 60.905 61.111 0.00 0.00 0.00 3.18
3205 3583 1.758122 GAATGATGGTGGTGGGGCC 60.758 63.158 0.00 0.00 37.90 5.80
3206 3584 0.324645 AAGAATGATGGTGGTGGGGC 60.325 55.000 0.00 0.00 0.00 5.80
3216 3594 1.103398 GGTGGGGCGGAAGAATGATG 61.103 60.000 0.00 0.00 0.00 3.07
3217 3595 1.227383 GGTGGGGCGGAAGAATGAT 59.773 57.895 0.00 0.00 0.00 2.45
3218 3596 1.910580 GAGGTGGGGCGGAAGAATGA 61.911 60.000 0.00 0.00 0.00 2.57
3219 3597 1.452108 GAGGTGGGGCGGAAGAATG 60.452 63.158 0.00 0.00 0.00 2.67
3220 3598 2.680370 GGAGGTGGGGCGGAAGAAT 61.680 63.158 0.00 0.00 0.00 2.40
3221 3599 3.327404 GGAGGTGGGGCGGAAGAA 61.327 66.667 0.00 0.00 0.00 2.52
3227 3605 3.976490 TAGAGTGGGAGGTGGGGCG 62.976 68.421 0.00 0.00 0.00 6.13
3228 3606 1.615424 TTAGAGTGGGAGGTGGGGC 60.615 63.158 0.00 0.00 0.00 5.80
3229 3607 0.042731 TCTTAGAGTGGGAGGTGGGG 59.957 60.000 0.00 0.00 0.00 4.96
3230 3608 1.765314 CATCTTAGAGTGGGAGGTGGG 59.235 57.143 0.00 0.00 0.00 4.61
3231 3609 2.752030 TCATCTTAGAGTGGGAGGTGG 58.248 52.381 0.00 0.00 0.00 4.61
3232 3610 3.070734 CCATCATCTTAGAGTGGGAGGTG 59.929 52.174 3.96 0.00 0.00 4.00
3233 3611 3.312890 CCATCATCTTAGAGTGGGAGGT 58.687 50.000 3.96 0.00 0.00 3.85
3238 3616 3.007398 GCTACCCCATCATCTTAGAGTGG 59.993 52.174 4.69 4.69 0.00 4.00
3239 3617 3.007398 GGCTACCCCATCATCTTAGAGTG 59.993 52.174 0.00 0.00 0.00 3.51
3240 3618 3.243724 GGCTACCCCATCATCTTAGAGT 58.756 50.000 0.00 0.00 0.00 3.24
3241 3619 3.971245 GGCTACCCCATCATCTTAGAG 57.029 52.381 0.00 0.00 0.00 2.43
3268 3646 2.202810 GGAGAAGGAAGCGGCTCG 60.203 66.667 1.45 0.00 0.00 5.03
3269 3647 0.461163 GAAGGAGAAGGAAGCGGCTC 60.461 60.000 1.45 0.00 0.00 4.70
3270 3648 1.599576 GAAGGAGAAGGAAGCGGCT 59.400 57.895 0.00 0.00 0.00 5.52
3271 3649 1.450491 GGAAGGAGAAGGAAGCGGC 60.450 63.158 0.00 0.00 0.00 6.53
3272 3650 0.615850 AAGGAAGGAGAAGGAAGCGG 59.384 55.000 0.00 0.00 0.00 5.52
3273 3651 1.406205 GGAAGGAAGGAGAAGGAAGCG 60.406 57.143 0.00 0.00 0.00 4.68
3274 3652 1.065053 GGGAAGGAAGGAGAAGGAAGC 60.065 57.143 0.00 0.00 0.00 3.86
3275 3653 2.503765 GAGGGAAGGAAGGAGAAGGAAG 59.496 54.545 0.00 0.00 0.00 3.46
3276 3654 2.552367 GAGGGAAGGAAGGAGAAGGAA 58.448 52.381 0.00 0.00 0.00 3.36
3277 3655 1.273896 GGAGGGAAGGAAGGAGAAGGA 60.274 57.143 0.00 0.00 0.00 3.36
3278 3656 1.208706 GGAGGGAAGGAAGGAGAAGG 58.791 60.000 0.00 0.00 0.00 3.46
3279 3657 1.836802 CTGGAGGGAAGGAAGGAGAAG 59.163 57.143 0.00 0.00 0.00 2.85
3280 3658 1.958288 CTGGAGGGAAGGAAGGAGAA 58.042 55.000 0.00 0.00 0.00 2.87
3281 3659 0.618968 GCTGGAGGGAAGGAAGGAGA 60.619 60.000 0.00 0.00 0.00 3.71
3282 3660 1.631071 GGCTGGAGGGAAGGAAGGAG 61.631 65.000 0.00 0.00 0.00 3.69
3283 3661 1.616628 GGCTGGAGGGAAGGAAGGA 60.617 63.158 0.00 0.00 0.00 3.36
3284 3662 1.925455 TGGCTGGAGGGAAGGAAGG 60.925 63.158 0.00 0.00 0.00 3.46
3285 3663 1.301293 GTGGCTGGAGGGAAGGAAG 59.699 63.158 0.00 0.00 0.00 3.46
3286 3664 2.231380 GGTGGCTGGAGGGAAGGAA 61.231 63.158 0.00 0.00 0.00 3.36
3287 3665 2.610859 GGTGGCTGGAGGGAAGGA 60.611 66.667 0.00 0.00 0.00 3.36
3288 3666 2.203549 GAAGGTGGCTGGAGGGAAGG 62.204 65.000 0.00 0.00 0.00 3.46
3289 3667 1.301293 GAAGGTGGCTGGAGGGAAG 59.699 63.158 0.00 0.00 0.00 3.46
3290 3668 2.231380 GGAAGGTGGCTGGAGGGAA 61.231 63.158 0.00 0.00 0.00 3.97
3291 3669 2.610859 GGAAGGTGGCTGGAGGGA 60.611 66.667 0.00 0.00 0.00 4.20
3292 3670 2.203549 GAAGGAAGGTGGCTGGAGGG 62.204 65.000 0.00 0.00 0.00 4.30
3293 3671 1.204113 AGAAGGAAGGTGGCTGGAGG 61.204 60.000 0.00 0.00 0.00 4.30
3294 3672 0.251634 GAGAAGGAAGGTGGCTGGAG 59.748 60.000 0.00 0.00 0.00 3.86
3295 3673 1.201429 GGAGAAGGAAGGTGGCTGGA 61.201 60.000 0.00 0.00 0.00 3.86
3296 3674 1.204113 AGGAGAAGGAAGGTGGCTGG 61.204 60.000 0.00 0.00 0.00 4.85
3297 3675 0.695347 AAGGAGAAGGAAGGTGGCTG 59.305 55.000 0.00 0.00 0.00 4.85
3298 3676 0.988063 GAAGGAGAAGGAAGGTGGCT 59.012 55.000 0.00 0.00 0.00 4.75
3299 3677 0.034960 GGAAGGAGAAGGAAGGTGGC 60.035 60.000 0.00 0.00 0.00 5.01
3300 3678 1.662686 AGGAAGGAGAAGGAAGGTGG 58.337 55.000 0.00 0.00 0.00 4.61
3301 3679 2.026729 GGAAGGAAGGAGAAGGAAGGTG 60.027 54.545 0.00 0.00 0.00 4.00
3302 3680 2.157926 AGGAAGGAAGGAGAAGGAAGGT 60.158 50.000 0.00 0.00 0.00 3.50
3303 3681 2.556766 AGGAAGGAAGGAGAAGGAAGG 58.443 52.381 0.00 0.00 0.00 3.46
3304 3682 3.584848 TGAAGGAAGGAAGGAGAAGGAAG 59.415 47.826 0.00 0.00 0.00 3.46
3305 3683 3.598264 TGAAGGAAGGAAGGAGAAGGAA 58.402 45.455 0.00 0.00 0.00 3.36
3306 3684 3.275848 TGAAGGAAGGAAGGAGAAGGA 57.724 47.619 0.00 0.00 0.00 3.36
3307 3685 4.373156 TTTGAAGGAAGGAAGGAGAAGG 57.627 45.455 0.00 0.00 0.00 3.46
3308 3686 5.123027 CGATTTTGAAGGAAGGAAGGAGAAG 59.877 44.000 0.00 0.00 0.00 2.85
3309 3687 5.003804 CGATTTTGAAGGAAGGAAGGAGAA 58.996 41.667 0.00 0.00 0.00 2.87
3310 3688 4.286032 TCGATTTTGAAGGAAGGAAGGAGA 59.714 41.667 0.00 0.00 0.00 3.71
3311 3689 4.393371 GTCGATTTTGAAGGAAGGAAGGAG 59.607 45.833 0.00 0.00 0.00 3.69
3312 3690 4.041691 AGTCGATTTTGAAGGAAGGAAGGA 59.958 41.667 0.00 0.00 0.00 3.36
3313 3691 4.327680 AGTCGATTTTGAAGGAAGGAAGG 58.672 43.478 0.00 0.00 0.00 3.46
3314 3692 6.128254 GGTTAGTCGATTTTGAAGGAAGGAAG 60.128 42.308 0.00 0.00 0.00 3.46
3315 3693 5.704053 GGTTAGTCGATTTTGAAGGAAGGAA 59.296 40.000 0.00 0.00 0.00 3.36
3316 3694 5.221762 TGGTTAGTCGATTTTGAAGGAAGGA 60.222 40.000 0.00 0.00 0.00 3.36
3317 3695 5.001232 TGGTTAGTCGATTTTGAAGGAAGG 58.999 41.667 0.00 0.00 0.00 3.46
3318 3696 5.468746 TGTGGTTAGTCGATTTTGAAGGAAG 59.531 40.000 0.00 0.00 0.00 3.46
3319 3697 5.369833 TGTGGTTAGTCGATTTTGAAGGAA 58.630 37.500 0.00 0.00 0.00 3.36
3320 3698 4.963373 TGTGGTTAGTCGATTTTGAAGGA 58.037 39.130 0.00 0.00 0.00 3.36
3321 3699 5.682943 TTGTGGTTAGTCGATTTTGAAGG 57.317 39.130 0.00 0.00 0.00 3.46
3322 3700 7.481798 GCTATTTGTGGTTAGTCGATTTTGAAG 59.518 37.037 0.00 0.00 0.00 3.02
3323 3701 7.174253 AGCTATTTGTGGTTAGTCGATTTTGAA 59.826 33.333 0.00 0.00 0.00 2.69
3324 3702 6.653320 AGCTATTTGTGGTTAGTCGATTTTGA 59.347 34.615 0.00 0.00 0.00 2.69
3325 3703 6.842163 AGCTATTTGTGGTTAGTCGATTTTG 58.158 36.000 0.00 0.00 0.00 2.44
3326 3704 8.556213 TTAGCTATTTGTGGTTAGTCGATTTT 57.444 30.769 0.00 0.00 0.00 1.82
3327 3705 8.556213 TTTAGCTATTTGTGGTTAGTCGATTT 57.444 30.769 0.00 0.00 0.00 2.17
3328 3706 7.822822 ACTTTAGCTATTTGTGGTTAGTCGATT 59.177 33.333 0.00 0.00 0.00 3.34
3329 3707 7.328737 ACTTTAGCTATTTGTGGTTAGTCGAT 58.671 34.615 0.00 0.00 0.00 3.59
3330 3708 6.694447 ACTTTAGCTATTTGTGGTTAGTCGA 58.306 36.000 0.00 0.00 0.00 4.20
3331 3709 6.588756 TGACTTTAGCTATTTGTGGTTAGTCG 59.411 38.462 0.00 0.00 32.85 4.18
3332 3710 7.603024 ACTGACTTTAGCTATTTGTGGTTAGTC 59.397 37.037 0.00 0.00 0.00 2.59
3333 3711 7.450903 ACTGACTTTAGCTATTTGTGGTTAGT 58.549 34.615 0.00 0.00 0.00 2.24
3334 3712 7.602644 TGACTGACTTTAGCTATTTGTGGTTAG 59.397 37.037 0.00 0.00 0.00 2.34
3335 3713 7.446769 TGACTGACTTTAGCTATTTGTGGTTA 58.553 34.615 0.00 0.00 0.00 2.85
3336 3714 6.296026 TGACTGACTTTAGCTATTTGTGGTT 58.704 36.000 0.00 0.00 0.00 3.67
3337 3715 5.865085 TGACTGACTTTAGCTATTTGTGGT 58.135 37.500 0.00 0.00 0.00 4.16
3338 3716 6.428159 AGTTGACTGACTTTAGCTATTTGTGG 59.572 38.462 0.00 0.00 0.00 4.17
3339 3717 7.293745 CAGTTGACTGACTTTAGCTATTTGTG 58.706 38.462 5.19 0.00 46.59 3.33
3340 3718 7.426929 CAGTTGACTGACTTTAGCTATTTGT 57.573 36.000 5.19 0.00 46.59 2.83
3355 3733 7.095060 ACACAATAGCTAAATGTCAGTTGACTG 60.095 37.037 12.97 4.77 44.99 3.51
3356 3734 6.936900 ACACAATAGCTAAATGTCAGTTGACT 59.063 34.615 12.97 0.00 44.99 3.41
3357 3735 7.133891 ACACAATAGCTAAATGTCAGTTGAC 57.866 36.000 11.45 5.33 44.97 3.18
3358 3736 7.661437 AGAACACAATAGCTAAATGTCAGTTGA 59.339 33.333 16.64 0.00 0.00 3.18
3359 3737 7.747799 CAGAACACAATAGCTAAATGTCAGTTG 59.252 37.037 16.64 9.46 0.00 3.16
3360 3738 7.445402 ACAGAACACAATAGCTAAATGTCAGTT 59.555 33.333 11.45 12.79 0.00 3.16
3361 3739 6.936900 ACAGAACACAATAGCTAAATGTCAGT 59.063 34.615 11.45 6.44 0.00 3.41
3362 3740 7.369803 ACAGAACACAATAGCTAAATGTCAG 57.630 36.000 11.45 5.93 0.00 3.51
3363 3741 7.744087 AACAGAACACAATAGCTAAATGTCA 57.256 32.000 11.45 0.00 0.00 3.58
3371 3749 9.630098 CATGAAATAAAACAGAACACAATAGCT 57.370 29.630 0.00 0.00 0.00 3.32
3372 3750 8.863049 CCATGAAATAAAACAGAACACAATAGC 58.137 33.333 0.00 0.00 0.00 2.97
3373 3751 9.912634 ACCATGAAATAAAACAGAACACAATAG 57.087 29.630 0.00 0.00 0.00 1.73
3374 3752 9.689976 CACCATGAAATAAAACAGAACACAATA 57.310 29.630 0.00 0.00 0.00 1.90
3375 3753 8.203485 ACACCATGAAATAAAACAGAACACAAT 58.797 29.630 0.00 0.00 0.00 2.71
3376 3754 7.551585 ACACCATGAAATAAAACAGAACACAA 58.448 30.769 0.00 0.00 0.00 3.33
3377 3755 7.106439 ACACCATGAAATAAAACAGAACACA 57.894 32.000 0.00 0.00 0.00 3.72
3378 3756 9.180678 CTTACACCATGAAATAAAACAGAACAC 57.819 33.333 0.00 0.00 0.00 3.32
3379 3757 9.126151 TCTTACACCATGAAATAAAACAGAACA 57.874 29.630 0.00 0.00 0.00 3.18
3382 3760 9.513906 TCATCTTACACCATGAAATAAAACAGA 57.486 29.630 0.00 0.00 0.00 3.41
3387 3765 9.473007 TCCAATCATCTTACACCATGAAATAAA 57.527 29.630 0.00 0.00 32.76 1.40
3388 3766 9.473007 TTCCAATCATCTTACACCATGAAATAA 57.527 29.630 0.00 0.00 32.76 1.40
3389 3767 9.473007 TTTCCAATCATCTTACACCATGAAATA 57.527 29.630 0.00 0.00 32.76 1.40
3390 3768 7.959658 TTCCAATCATCTTACACCATGAAAT 57.040 32.000 0.00 0.00 32.76 2.17
3391 3769 7.773489 TTTCCAATCATCTTACACCATGAAA 57.227 32.000 0.00 0.00 32.76 2.69
3392 3770 7.773489 TTTTCCAATCATCTTACACCATGAA 57.227 32.000 0.00 0.00 32.76 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.