Multiple sequence alignment - TraesCS4A01G002900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G002900 chr4A 100.000 3414 0 0 1 3414 2557274 2553861 0.000000e+00 6305.0
1 TraesCS4A01G002900 chr4A 87.097 1798 176 29 638 2418 2737093 2738851 0.000000e+00 1984.0
2 TraesCS4A01G002900 chr4A 90.273 1429 118 12 997 2415 2774621 2776038 0.000000e+00 1849.0
3 TraesCS4A01G002900 chr4A 98.371 614 8 2 1 613 31118386 31118998 0.000000e+00 1077.0
4 TraesCS4A01G002900 chr4D 89.716 1760 112 39 700 2440 469163830 469165539 0.000000e+00 2183.0
5 TraesCS4A01G002900 chr4D 87.472 1804 156 39 638 2418 468900203 468898447 0.000000e+00 2015.0
6 TraesCS4A01G002900 chr4D 89.812 1433 125 12 993 2418 468863178 468861760 0.000000e+00 1818.0
7 TraesCS4A01G002900 chr4D 86.108 943 122 5 1476 2415 507006045 507006981 0.000000e+00 1007.0
8 TraesCS4A01G002900 chr4D 95.320 406 16 3 3001 3404 469165902 469166306 2.870000e-180 641.0
9 TraesCS4A01G002900 chr4D 90.690 290 27 0 2439 2728 44047682 44047393 1.490000e-103 387.0
10 TraesCS4A01G002900 chr4D 91.071 280 25 0 2439 2718 95811118 95811397 2.490000e-101 379.0
11 TraesCS4A01G002900 chr4D 89.806 206 7 6 2738 2930 469165557 469165761 5.660000e-63 252.0
12 TraesCS4A01G002900 chr4D 94.737 38 2 0 645 682 469163156 469163193 3.680000e-05 60.2
13 TraesCS4A01G002900 chr4B 90.648 1465 99 15 994 2440 588844709 588846153 0.000000e+00 1912.0
14 TraesCS4A01G002900 chr4B 86.458 1787 165 44 642 2418 588694267 588692548 0.000000e+00 1888.0
15 TraesCS4A01G002900 chr4B 89.785 1439 117 14 999 2418 588592098 588590671 0.000000e+00 1816.0
16 TraesCS4A01G002900 chr4B 87.169 943 112 8 1476 2415 663985666 663986602 0.000000e+00 1062.0
17 TraesCS4A01G002900 chr4B 88.584 473 40 7 2942 3401 588846612 588847083 2.300000e-156 562.0
18 TraesCS4A01G002900 chr4B 86.905 168 9 5 792 956 588844551 588844708 3.500000e-40 176.0
19 TraesCS4A01G002900 chr5B 85.635 1260 138 24 996 2243 636977423 636978651 0.000000e+00 1284.0
20 TraesCS4A01G002900 chr5B 98.534 614 7 2 1 613 478915413 478916025 0.000000e+00 1083.0
21 TraesCS4A01G002900 chr7B 98.371 614 8 2 1 613 28891014 28891626 0.000000e+00 1077.0
22 TraesCS4A01G002900 chr1B 98.208 614 9 2 1 613 634676318 634676930 0.000000e+00 1072.0
23 TraesCS4A01G002900 chr5A 98.052 616 10 2 1 615 30054086 30054700 0.000000e+00 1070.0
24 TraesCS4A01G002900 chr6A 97.886 615 9 4 1 613 119755583 119754971 0.000000e+00 1061.0
25 TraesCS4A01G002900 chr3B 97.879 613 11 2 1 613 642002264 642001654 0.000000e+00 1059.0
26 TraesCS4A01G002900 chr3B 97.727 616 10 3 1 614 623089384 623089997 0.000000e+00 1057.0
27 TraesCS4A01G002900 chr2B 97.879 613 11 2 1 613 203900512 203899902 0.000000e+00 1059.0
28 TraesCS4A01G002900 chr7D 92.143 280 22 0 2439 2718 617107768 617107489 2.470000e-106 396.0
29 TraesCS4A01G002900 chr7D 91.398 279 23 1 2440 2718 432694914 432695191 6.910000e-102 381.0
30 TraesCS4A01G002900 chr6D 91.429 280 24 0 2439 2718 148775017 148774738 5.340000e-103 385.0
31 TraesCS4A01G002900 chr2A 91.429 280 24 0 2439 2718 689530422 689530143 5.340000e-103 385.0
32 TraesCS4A01G002900 chr1D 91.429 280 24 0 2439 2718 410600862 410600583 5.340000e-103 385.0
33 TraesCS4A01G002900 chr2D 91.071 280 25 0 2439 2718 486449287 486449566 2.490000e-101 379.0
34 TraesCS4A01G002900 chr7A 88.818 313 28 6 2411 2718 720873735 720874045 8.940000e-101 377.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G002900 chr4A 2553861 2557274 3413 True 6305.000000 6305 100.000000 1 3414 1 chr4A.!!$R1 3413
1 TraesCS4A01G002900 chr4A 2737093 2738851 1758 False 1984.000000 1984 87.097000 638 2418 1 chr4A.!!$F1 1780
2 TraesCS4A01G002900 chr4A 2774621 2776038 1417 False 1849.000000 1849 90.273000 997 2415 1 chr4A.!!$F2 1418
3 TraesCS4A01G002900 chr4A 31118386 31118998 612 False 1077.000000 1077 98.371000 1 613 1 chr4A.!!$F3 612
4 TraesCS4A01G002900 chr4D 468898447 468900203 1756 True 2015.000000 2015 87.472000 638 2418 1 chr4D.!!$R3 1780
5 TraesCS4A01G002900 chr4D 468861760 468863178 1418 True 1818.000000 1818 89.812000 993 2418 1 chr4D.!!$R2 1425
6 TraesCS4A01G002900 chr4D 507006045 507006981 936 False 1007.000000 1007 86.108000 1476 2415 1 chr4D.!!$F2 939
7 TraesCS4A01G002900 chr4D 469163156 469166306 3150 False 784.050000 2183 92.394750 645 3404 4 chr4D.!!$F3 2759
8 TraesCS4A01G002900 chr4B 588692548 588694267 1719 True 1888.000000 1888 86.458000 642 2418 1 chr4B.!!$R2 1776
9 TraesCS4A01G002900 chr4B 588590671 588592098 1427 True 1816.000000 1816 89.785000 999 2418 1 chr4B.!!$R1 1419
10 TraesCS4A01G002900 chr4B 663985666 663986602 936 False 1062.000000 1062 87.169000 1476 2415 1 chr4B.!!$F1 939
11 TraesCS4A01G002900 chr4B 588844551 588847083 2532 False 883.333333 1912 88.712333 792 3401 3 chr4B.!!$F2 2609
12 TraesCS4A01G002900 chr5B 636977423 636978651 1228 False 1284.000000 1284 85.635000 996 2243 1 chr5B.!!$F2 1247
13 TraesCS4A01G002900 chr5B 478915413 478916025 612 False 1083.000000 1083 98.534000 1 613 1 chr5B.!!$F1 612
14 TraesCS4A01G002900 chr7B 28891014 28891626 612 False 1077.000000 1077 98.371000 1 613 1 chr7B.!!$F1 612
15 TraesCS4A01G002900 chr1B 634676318 634676930 612 False 1072.000000 1072 98.208000 1 613 1 chr1B.!!$F1 612
16 TraesCS4A01G002900 chr5A 30054086 30054700 614 False 1070.000000 1070 98.052000 1 615 1 chr5A.!!$F1 614
17 TraesCS4A01G002900 chr6A 119754971 119755583 612 True 1061.000000 1061 97.886000 1 613 1 chr6A.!!$R1 612
18 TraesCS4A01G002900 chr3B 642001654 642002264 610 True 1059.000000 1059 97.879000 1 613 1 chr3B.!!$R1 612
19 TraesCS4A01G002900 chr3B 623089384 623089997 613 False 1057.000000 1057 97.727000 1 614 1 chr3B.!!$F1 613
20 TraesCS4A01G002900 chr2B 203899902 203900512 610 True 1059.000000 1059 97.879000 1 613 1 chr2B.!!$R1 612

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
945 1584 0.179187 CGCACTACTCGAGGTCACAG 60.179 60.0 18.41 7.9 0.0 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2578 3294 0.248621 GCGGCGGAATCAGATTTTGG 60.249 55.0 9.78 0.0 0.0 3.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
218 221 0.891904 GCGGGGTGCAGTTAGGAAAA 60.892 55.000 0.00 0.00 45.45 2.29
616 620 4.100279 TCCATTAGGAGTAGAGATGCGA 57.900 45.455 0.00 0.00 39.61 5.10
617 621 3.821600 TCCATTAGGAGTAGAGATGCGAC 59.178 47.826 0.00 0.00 39.61 5.19
618 622 3.570125 CCATTAGGAGTAGAGATGCGACA 59.430 47.826 0.00 0.00 36.89 4.35
619 623 4.541779 CATTAGGAGTAGAGATGCGACAC 58.458 47.826 0.00 0.00 0.00 3.67
620 624 1.394618 AGGAGTAGAGATGCGACACC 58.605 55.000 0.00 0.00 34.06 4.16
621 625 1.103803 GGAGTAGAGATGCGACACCA 58.896 55.000 0.00 0.00 34.04 4.17
622 626 1.476891 GGAGTAGAGATGCGACACCAA 59.523 52.381 0.00 0.00 34.04 3.67
623 627 2.094182 GGAGTAGAGATGCGACACCAAA 60.094 50.000 0.00 0.00 34.04 3.28
624 628 3.430929 GGAGTAGAGATGCGACACCAAAT 60.431 47.826 0.00 0.00 34.04 2.32
625 629 3.525537 AGTAGAGATGCGACACCAAATG 58.474 45.455 0.00 0.00 0.00 2.32
626 630 2.768253 AGAGATGCGACACCAAATGA 57.232 45.000 0.00 0.00 0.00 2.57
627 631 2.350522 AGAGATGCGACACCAAATGAC 58.649 47.619 0.00 0.00 0.00 3.06
628 632 2.076100 GAGATGCGACACCAAATGACA 58.924 47.619 0.00 0.00 0.00 3.58
629 633 1.806542 AGATGCGACACCAAATGACAC 59.193 47.619 0.00 0.00 0.00 3.67
630 634 0.516877 ATGCGACACCAAATGACACG 59.483 50.000 0.00 0.00 0.00 4.49
631 635 0.530870 TGCGACACCAAATGACACGA 60.531 50.000 0.00 0.00 0.00 4.35
632 636 0.584396 GCGACACCAAATGACACGAA 59.416 50.000 0.00 0.00 0.00 3.85
633 637 1.003331 GCGACACCAAATGACACGAAA 60.003 47.619 0.00 0.00 0.00 3.46
634 638 2.539953 GCGACACCAAATGACACGAAAA 60.540 45.455 0.00 0.00 0.00 2.29
635 639 3.851838 GCGACACCAAATGACACGAAAAT 60.852 43.478 0.00 0.00 0.00 1.82
636 640 3.663564 CGACACCAAATGACACGAAAATG 59.336 43.478 0.00 0.00 0.00 2.32
686 693 2.124193 CATCGATGGGCAGGGCAA 60.124 61.111 17.96 0.00 0.00 4.52
688 695 2.982643 ATCGATGGGCAGGGCAACA 61.983 57.895 0.00 0.00 39.74 3.33
694 701 2.116125 GGCAGGGCAACAGACCTT 59.884 61.111 0.00 0.00 37.58 3.50
695 702 1.531602 GGCAGGGCAACAGACCTTT 60.532 57.895 0.00 0.00 37.58 3.11
782 1412 7.584122 ACCTACTGTACACAGATGGTTATAG 57.416 40.000 16.05 5.41 46.59 1.31
783 1413 6.550108 ACCTACTGTACACAGATGGTTATAGG 59.450 42.308 16.05 14.82 46.59 2.57
784 1414 6.550108 CCTACTGTACACAGATGGTTATAGGT 59.450 42.308 16.05 0.00 46.59 3.08
785 1415 6.222038 ACTGTACACAGATGGTTATAGGTG 57.778 41.667 16.05 0.00 46.59 4.00
786 1416 5.018539 TGTACACAGATGGTTATAGGTGC 57.981 43.478 0.00 0.00 0.00 5.01
787 1417 4.468153 TGTACACAGATGGTTATAGGTGCA 59.532 41.667 0.00 0.00 0.00 4.57
788 1418 4.142609 ACACAGATGGTTATAGGTGCAG 57.857 45.455 0.00 0.00 0.00 4.41
789 1419 3.774766 ACACAGATGGTTATAGGTGCAGA 59.225 43.478 0.00 0.00 0.00 4.26
790 1420 4.122776 CACAGATGGTTATAGGTGCAGAC 58.877 47.826 0.00 0.00 0.00 3.51
858 1497 0.886490 GTGCAGCCACAGCAAGTAGT 60.886 55.000 0.00 0.00 44.64 2.73
860 1499 1.338105 TGCAGCCACAGCAAGTAGTAG 60.338 52.381 0.00 0.00 43.56 2.57
861 1500 1.066858 GCAGCCACAGCAAGTAGTAGA 60.067 52.381 0.00 0.00 43.56 2.59
862 1501 2.612972 GCAGCCACAGCAAGTAGTAGAA 60.613 50.000 0.00 0.00 43.56 2.10
863 1502 3.866651 CAGCCACAGCAAGTAGTAGAAT 58.133 45.455 0.00 0.00 43.56 2.40
864 1503 3.868077 CAGCCACAGCAAGTAGTAGAATC 59.132 47.826 0.00 0.00 43.56 2.52
866 1505 3.118592 GCCACAGCAAGTAGTAGAATCCT 60.119 47.826 0.00 0.00 39.53 3.24
867 1506 4.624125 GCCACAGCAAGTAGTAGAATCCTT 60.624 45.833 0.00 0.00 39.53 3.36
868 1507 5.112686 CCACAGCAAGTAGTAGAATCCTTC 58.887 45.833 0.00 0.00 0.00 3.46
869 1508 5.105146 CCACAGCAAGTAGTAGAATCCTTCT 60.105 44.000 0.00 0.00 43.72 2.85
870 1509 6.096987 CCACAGCAAGTAGTAGAATCCTTCTA 59.903 42.308 0.00 0.00 41.14 2.10
871 1510 7.199766 CACAGCAAGTAGTAGAATCCTTCTAG 58.800 42.308 0.00 0.00 42.56 2.43
910 1549 3.007635 CCTCTAACCCGTTCACCAAATC 58.992 50.000 0.00 0.00 0.00 2.17
912 1551 4.069304 CTCTAACCCGTTCACCAAATCAA 58.931 43.478 0.00 0.00 0.00 2.57
913 1552 4.069304 TCTAACCCGTTCACCAAATCAAG 58.931 43.478 0.00 0.00 0.00 3.02
914 1553 0.958822 ACCCGTTCACCAAATCAAGC 59.041 50.000 0.00 0.00 0.00 4.01
915 1554 1.247567 CCCGTTCACCAAATCAAGCT 58.752 50.000 0.00 0.00 0.00 3.74
945 1584 0.179187 CGCACTACTCGAGGTCACAG 60.179 60.000 18.41 7.90 0.00 3.66
959 1598 2.095161 GGTCACAGACGGTTAGAGAGTG 60.095 54.545 0.00 0.00 32.65 3.51
988 1643 5.628193 ACGAATTAACGTACAGAGAACACTG 59.372 40.000 0.00 0.00 44.72 3.66
1072 1727 2.915659 TCACCGGCGACAAGGTCT 60.916 61.111 9.30 0.00 39.00 3.85
1119 1774 3.468063 GACACCTTCGTCCCCACT 58.532 61.111 0.00 0.00 0.00 4.00
1281 1938 2.780094 CGTGCTCCTGATCGAGGCT 61.780 63.158 6.38 0.00 42.47 4.58
1383 2041 3.010420 GGAGGTATCTGTTGCTTGGTTC 58.990 50.000 0.00 0.00 0.00 3.62
1665 2355 3.560251 CCGGCCCCATTCCTCGAT 61.560 66.667 0.00 0.00 0.00 3.59
1746 2436 1.663702 GTTCACGTGTGGAGACGGG 60.664 63.158 16.51 0.00 44.41 5.28
1983 2692 3.550431 CCTCCCGTGCCGATGGAT 61.550 66.667 0.00 0.00 0.00 3.41
2031 2740 4.785453 CCAAGGCTCCAGGTCCGC 62.785 72.222 0.00 0.00 0.00 5.54
2131 2847 1.906824 TCCTTCGTGGACTTCGGCT 60.907 57.895 0.00 0.00 40.56 5.52
2434 3150 8.594881 ATTGATCGAGATTTATGGTCTTGTAC 57.405 34.615 0.00 0.00 0.00 2.90
2440 3156 6.638873 CGAGATTTATGGTCTTGTACTAGCTG 59.361 42.308 0.00 0.00 0.00 4.24
2441 3157 7.425224 AGATTTATGGTCTTGTACTAGCTGT 57.575 36.000 0.00 0.00 0.00 4.40
2442 3158 7.852263 AGATTTATGGTCTTGTACTAGCTGTT 58.148 34.615 0.00 0.00 0.00 3.16
2443 3159 8.322091 AGATTTATGGTCTTGTACTAGCTGTTT 58.678 33.333 0.00 0.00 0.00 2.83
2444 3160 7.667043 TTTATGGTCTTGTACTAGCTGTTTG 57.333 36.000 0.00 0.00 0.00 2.93
2445 3161 4.002906 TGGTCTTGTACTAGCTGTTTGG 57.997 45.455 0.00 0.00 0.00 3.28
2446 3162 3.389983 TGGTCTTGTACTAGCTGTTTGGT 59.610 43.478 0.00 0.00 0.00 3.67
2447 3163 4.141574 TGGTCTTGTACTAGCTGTTTGGTT 60.142 41.667 0.00 0.00 0.00 3.67
2448 3164 4.451435 GGTCTTGTACTAGCTGTTTGGTTC 59.549 45.833 0.00 0.00 0.00 3.62
2449 3165 5.054477 GTCTTGTACTAGCTGTTTGGTTCA 58.946 41.667 0.00 0.00 0.00 3.18
2450 3166 5.050295 GTCTTGTACTAGCTGTTTGGTTCAC 60.050 44.000 0.00 0.00 0.00 3.18
2451 3167 3.735591 TGTACTAGCTGTTTGGTTCACC 58.264 45.455 0.00 0.00 0.00 4.02
2452 3168 3.389983 TGTACTAGCTGTTTGGTTCACCT 59.610 43.478 0.00 0.00 36.82 4.00
2453 3169 3.577805 ACTAGCTGTTTGGTTCACCTT 57.422 42.857 0.00 0.00 36.82 3.50
2454 3170 3.898482 ACTAGCTGTTTGGTTCACCTTT 58.102 40.909 0.00 0.00 36.82 3.11
2455 3171 4.278310 ACTAGCTGTTTGGTTCACCTTTT 58.722 39.130 0.00 0.00 36.82 2.27
2456 3172 5.442391 ACTAGCTGTTTGGTTCACCTTTTA 58.558 37.500 0.00 0.00 36.82 1.52
2457 3173 6.068670 ACTAGCTGTTTGGTTCACCTTTTAT 58.931 36.000 0.00 0.00 36.82 1.40
2458 3174 5.453567 AGCTGTTTGGTTCACCTTTTATC 57.546 39.130 0.00 0.00 36.82 1.75
2459 3175 4.023193 AGCTGTTTGGTTCACCTTTTATCG 60.023 41.667 0.00 0.00 36.82 2.92
2460 3176 4.023536 GCTGTTTGGTTCACCTTTTATCGA 60.024 41.667 0.00 0.00 36.82 3.59
2461 3177 5.427036 TGTTTGGTTCACCTTTTATCGAC 57.573 39.130 0.00 0.00 36.82 4.20
2462 3178 4.024725 TGTTTGGTTCACCTTTTATCGACG 60.025 41.667 0.00 0.00 36.82 5.12
2463 3179 2.690786 TGGTTCACCTTTTATCGACGG 58.309 47.619 0.00 0.00 36.82 4.79
2464 3180 2.299582 TGGTTCACCTTTTATCGACGGA 59.700 45.455 0.00 0.00 36.82 4.69
2465 3181 3.055675 TGGTTCACCTTTTATCGACGGAT 60.056 43.478 0.00 0.00 36.82 4.18
2466 3182 3.937079 GGTTCACCTTTTATCGACGGATT 59.063 43.478 0.00 0.00 34.00 3.01
2467 3183 4.393990 GGTTCACCTTTTATCGACGGATTT 59.606 41.667 0.00 0.00 34.00 2.17
2468 3184 5.446875 GGTTCACCTTTTATCGACGGATTTC 60.447 44.000 0.00 0.00 34.00 2.17
2469 3185 3.861113 TCACCTTTTATCGACGGATTTCG 59.139 43.478 0.00 0.00 45.88 3.46
2470 3186 2.606272 ACCTTTTATCGACGGATTTCGC 59.394 45.455 0.00 0.00 43.89 4.70
2471 3187 2.864343 CCTTTTATCGACGGATTTCGCT 59.136 45.455 0.00 0.00 43.89 4.93
2472 3188 3.302480 CCTTTTATCGACGGATTTCGCTG 60.302 47.826 0.00 0.00 43.89 5.18
2473 3189 2.572191 TTATCGACGGATTTCGCTGT 57.428 45.000 0.00 0.00 43.89 4.40
2474 3190 2.115348 TATCGACGGATTTCGCTGTC 57.885 50.000 0.00 0.00 43.89 3.51
2476 3192 4.164252 GACGGATTTCGCTGTCGT 57.836 55.556 0.00 0.00 43.89 4.34
2477 3193 1.702299 GACGGATTTCGCTGTCGTG 59.298 57.895 0.00 0.00 43.89 4.35
2478 3194 2.279937 GACGGATTTCGCTGTCGTGC 62.280 60.000 0.00 0.00 43.89 5.34
2479 3195 2.379634 CGGATTTCGCTGTCGTGCA 61.380 57.895 0.00 0.00 36.96 4.57
2488 3204 3.134401 CTGTCGTGCAGCAGAATCT 57.866 52.632 0.00 0.00 38.52 2.40
2489 3205 2.284263 CTGTCGTGCAGCAGAATCTA 57.716 50.000 0.00 0.00 38.52 1.98
2490 3206 2.610433 CTGTCGTGCAGCAGAATCTAA 58.390 47.619 0.00 0.00 38.52 2.10
2491 3207 2.995939 CTGTCGTGCAGCAGAATCTAAA 59.004 45.455 0.00 0.00 38.52 1.85
2492 3208 2.736721 TGTCGTGCAGCAGAATCTAAAC 59.263 45.455 0.00 0.00 0.00 2.01
2493 3209 2.094417 GTCGTGCAGCAGAATCTAAACC 59.906 50.000 0.00 0.00 0.00 3.27
2494 3210 2.076100 CGTGCAGCAGAATCTAAACCA 58.924 47.619 0.00 0.00 0.00 3.67
2495 3211 2.483877 CGTGCAGCAGAATCTAAACCAA 59.516 45.455 0.00 0.00 0.00 3.67
2496 3212 3.058293 CGTGCAGCAGAATCTAAACCAAA 60.058 43.478 0.00 0.00 0.00 3.28
2497 3213 4.479619 GTGCAGCAGAATCTAAACCAAAG 58.520 43.478 0.00 0.00 0.00 2.77
2498 3214 3.507233 TGCAGCAGAATCTAAACCAAAGG 59.493 43.478 0.00 0.00 0.00 3.11
2499 3215 3.119352 GCAGCAGAATCTAAACCAAAGGG 60.119 47.826 0.00 0.00 41.29 3.95
2500 3216 3.092301 AGCAGAATCTAAACCAAAGGGC 58.908 45.455 0.00 0.00 37.90 5.19
2501 3217 2.159379 GCAGAATCTAAACCAAAGGGCG 60.159 50.000 0.00 0.00 37.90 6.13
2502 3218 3.343617 CAGAATCTAAACCAAAGGGCGA 58.656 45.455 0.00 0.00 37.90 5.54
2503 3219 3.756434 CAGAATCTAAACCAAAGGGCGAA 59.244 43.478 0.00 0.00 37.90 4.70
2504 3220 3.756963 AGAATCTAAACCAAAGGGCGAAC 59.243 43.478 0.00 0.00 37.90 3.95
2505 3221 1.900245 TCTAAACCAAAGGGCGAACC 58.100 50.000 0.00 0.00 37.90 3.62
2515 3231 4.889427 GGCGAACCCAGCAAAATC 57.111 55.556 0.00 0.00 36.08 2.17
2516 3232 1.215382 GGCGAACCCAGCAAAATCC 59.785 57.895 0.00 0.00 36.08 3.01
2517 3233 1.154035 GCGAACCCAGCAAAATCCG 60.154 57.895 0.00 0.00 34.19 4.18
2518 3234 1.582610 GCGAACCCAGCAAAATCCGA 61.583 55.000 0.00 0.00 34.19 4.55
2519 3235 1.094785 CGAACCCAGCAAAATCCGAT 58.905 50.000 0.00 0.00 0.00 4.18
2520 3236 1.472480 CGAACCCAGCAAAATCCGATT 59.528 47.619 0.00 0.00 0.00 3.34
2521 3237 2.094752 CGAACCCAGCAAAATCCGATTT 60.095 45.455 0.17 0.17 0.00 2.17
2522 3238 3.511699 GAACCCAGCAAAATCCGATTTC 58.488 45.455 6.82 0.00 0.00 2.17
2523 3239 2.524306 ACCCAGCAAAATCCGATTTCA 58.476 42.857 6.82 0.00 0.00 2.69
2524 3240 2.493278 ACCCAGCAAAATCCGATTTCAG 59.507 45.455 6.82 4.71 0.00 3.02
2525 3241 2.754552 CCCAGCAAAATCCGATTTCAGA 59.245 45.455 6.82 0.00 0.00 3.27
2526 3242 3.193267 CCCAGCAAAATCCGATTTCAGAA 59.807 43.478 6.82 0.00 0.00 3.02
2527 3243 4.321899 CCCAGCAAAATCCGATTTCAGAAA 60.322 41.667 6.82 0.00 0.00 2.52
2528 3244 5.413499 CCAGCAAAATCCGATTTCAGAAAT 58.587 37.500 8.20 8.20 0.00 2.17
2529 3245 5.870978 CCAGCAAAATCCGATTTCAGAAATT 59.129 36.000 9.84 0.00 0.00 1.82
2530 3246 6.035327 CCAGCAAAATCCGATTTCAGAAATTC 59.965 38.462 9.84 3.19 0.00 2.17
2531 3247 5.801947 AGCAAAATCCGATTTCAGAAATTCG 59.198 36.000 9.84 13.23 37.77 3.34
2532 3248 5.499176 GCAAAATCCGATTTCAGAAATTCGC 60.499 40.000 9.84 0.00 37.09 4.70
2533 3249 5.567138 AAATCCGATTTCAGAAATTCGCT 57.433 34.783 9.84 3.58 37.09 4.93
2534 3250 4.542662 ATCCGATTTCAGAAATTCGCTG 57.457 40.909 9.84 2.68 37.09 5.18
2535 3251 3.334691 TCCGATTTCAGAAATTCGCTGT 58.665 40.909 9.84 0.00 37.09 4.40
2536 3252 3.370978 TCCGATTTCAGAAATTCGCTGTC 59.629 43.478 9.84 0.00 37.09 3.51
2537 3253 3.125146 CCGATTTCAGAAATTCGCTGTCA 59.875 43.478 9.84 0.00 37.09 3.58
2538 3254 4.378356 CCGATTTCAGAAATTCGCTGTCAA 60.378 41.667 9.84 4.21 37.09 3.18
2539 3255 5.146460 CGATTTCAGAAATTCGCTGTCAAA 58.854 37.500 9.84 3.96 33.22 2.69
2540 3256 5.624900 CGATTTCAGAAATTCGCTGTCAAAA 59.375 36.000 9.84 3.43 33.22 2.44
2541 3257 6.306356 CGATTTCAGAAATTCGCTGTCAAAAT 59.694 34.615 9.84 6.97 33.22 1.82
2542 3258 6.991485 TTTCAGAAATTCGCTGTCAAAATC 57.009 33.333 7.81 0.00 34.98 2.17
2543 3259 5.947228 TCAGAAATTCGCTGTCAAAATCT 57.053 34.783 7.81 0.00 34.98 2.40
2544 3260 7.433708 TTCAGAAATTCGCTGTCAAAATCTA 57.566 32.000 7.81 0.00 34.98 1.98
2545 3261 7.433708 TCAGAAATTCGCTGTCAAAATCTAA 57.566 32.000 7.81 0.00 34.98 2.10
2546 3262 7.870826 TCAGAAATTCGCTGTCAAAATCTAAA 58.129 30.769 7.81 0.00 34.98 1.85
2547 3263 7.803189 TCAGAAATTCGCTGTCAAAATCTAAAC 59.197 33.333 7.81 0.00 34.98 2.01
2548 3264 7.061094 CAGAAATTCGCTGTCAAAATCTAAACC 59.939 37.037 1.23 0.00 0.00 3.27
2549 3265 5.957842 ATTCGCTGTCAAAATCTAAACCA 57.042 34.783 0.00 0.00 0.00 3.67
2550 3266 5.759506 TTCGCTGTCAAAATCTAAACCAA 57.240 34.783 0.00 0.00 0.00 3.67
2551 3267 5.759506 TCGCTGTCAAAATCTAAACCAAA 57.240 34.783 0.00 0.00 0.00 3.28
2552 3268 6.137794 TCGCTGTCAAAATCTAAACCAAAA 57.862 33.333 0.00 0.00 0.00 2.44
2553 3269 6.205784 TCGCTGTCAAAATCTAAACCAAAAG 58.794 36.000 0.00 0.00 0.00 2.27
2554 3270 5.107875 CGCTGTCAAAATCTAAACCAAAAGC 60.108 40.000 0.00 0.00 0.00 3.51
2555 3271 5.107875 GCTGTCAAAATCTAAACCAAAAGCG 60.108 40.000 0.00 0.00 0.00 4.68
2556 3272 5.285651 TGTCAAAATCTAAACCAAAAGCGG 58.714 37.500 0.00 0.00 0.00 5.52
2557 3273 5.067936 TGTCAAAATCTAAACCAAAAGCGGA 59.932 36.000 0.00 0.00 0.00 5.54
2558 3274 5.980715 GTCAAAATCTAAACCAAAAGCGGAA 59.019 36.000 0.00 0.00 0.00 4.30
2559 3275 6.143919 GTCAAAATCTAAACCAAAAGCGGAAG 59.856 38.462 0.00 0.00 0.00 3.46
2571 3287 3.442441 CGGAAGCAGCCCAAAACA 58.558 55.556 0.00 0.00 0.00 2.83
2572 3288 1.966762 CGGAAGCAGCCCAAAACAT 59.033 52.632 0.00 0.00 0.00 2.71
2573 3289 1.173043 CGGAAGCAGCCCAAAACATA 58.827 50.000 0.00 0.00 0.00 2.29
2574 3290 1.135402 CGGAAGCAGCCCAAAACATAC 60.135 52.381 0.00 0.00 0.00 2.39
2575 3291 2.171003 GGAAGCAGCCCAAAACATACT 58.829 47.619 0.00 0.00 0.00 2.12
2576 3292 2.562738 GGAAGCAGCCCAAAACATACTT 59.437 45.455 0.00 0.00 0.00 2.24
2577 3293 3.006859 GGAAGCAGCCCAAAACATACTTT 59.993 43.478 0.00 0.00 0.00 2.66
2578 3294 3.942130 AGCAGCCCAAAACATACTTTC 57.058 42.857 0.00 0.00 0.00 2.62
2579 3295 2.562738 AGCAGCCCAAAACATACTTTCC 59.437 45.455 0.00 0.00 0.00 3.13
2580 3296 2.298729 GCAGCCCAAAACATACTTTCCA 59.701 45.455 0.00 0.00 0.00 3.53
2581 3297 3.244044 GCAGCCCAAAACATACTTTCCAA 60.244 43.478 0.00 0.00 0.00 3.53
2582 3298 4.742138 GCAGCCCAAAACATACTTTCCAAA 60.742 41.667 0.00 0.00 0.00 3.28
2583 3299 5.363939 CAGCCCAAAACATACTTTCCAAAA 58.636 37.500 0.00 0.00 0.00 2.44
2584 3300 5.997129 CAGCCCAAAACATACTTTCCAAAAT 59.003 36.000 0.00 0.00 0.00 1.82
2585 3301 6.147656 CAGCCCAAAACATACTTTCCAAAATC 59.852 38.462 0.00 0.00 0.00 2.17
2586 3302 6.043127 AGCCCAAAACATACTTTCCAAAATCT 59.957 34.615 0.00 0.00 0.00 2.40
2587 3303 6.147656 GCCCAAAACATACTTTCCAAAATCTG 59.852 38.462 0.00 0.00 0.00 2.90
2588 3304 7.441017 CCCAAAACATACTTTCCAAAATCTGA 58.559 34.615 0.00 0.00 0.00 3.27
2589 3305 8.096414 CCCAAAACATACTTTCCAAAATCTGAT 58.904 33.333 0.00 0.00 0.00 2.90
2590 3306 9.492973 CCAAAACATACTTTCCAAAATCTGATT 57.507 29.630 0.00 0.00 0.00 2.57
2592 3308 9.710900 AAAACATACTTTCCAAAATCTGATTCC 57.289 29.630 2.92 0.00 0.00 3.01
2593 3309 7.088589 ACATACTTTCCAAAATCTGATTCCG 57.911 36.000 2.92 0.00 0.00 4.30
2594 3310 4.440839 ACTTTCCAAAATCTGATTCCGC 57.559 40.909 2.92 0.00 0.00 5.54
2595 3311 3.193479 ACTTTCCAAAATCTGATTCCGCC 59.807 43.478 2.92 0.00 0.00 6.13
2596 3312 1.378531 TCCAAAATCTGATTCCGCCG 58.621 50.000 2.92 0.00 0.00 6.46
2597 3313 0.248621 CCAAAATCTGATTCCGCCGC 60.249 55.000 2.92 0.00 0.00 6.53
2598 3314 0.589729 CAAAATCTGATTCCGCCGCG 60.590 55.000 5.59 5.59 0.00 6.46
2609 3325 3.124921 CGCCGCGGACCAAAATCT 61.125 61.111 33.48 0.00 0.00 2.40
2610 3326 2.485122 GCCGCGGACCAAAATCTG 59.515 61.111 33.48 0.00 0.00 2.90
2611 3327 2.038269 GCCGCGGACCAAAATCTGA 61.038 57.895 33.48 0.00 0.00 3.27
2612 3328 1.582610 GCCGCGGACCAAAATCTGAA 61.583 55.000 33.48 0.00 0.00 3.02
2613 3329 0.878416 CCGCGGACCAAAATCTGAAA 59.122 50.000 24.07 0.00 0.00 2.69
2614 3330 1.268352 CCGCGGACCAAAATCTGAAAA 59.732 47.619 24.07 0.00 0.00 2.29
2615 3331 2.287909 CCGCGGACCAAAATCTGAAAAA 60.288 45.455 24.07 0.00 0.00 1.94
2616 3332 2.979813 CGCGGACCAAAATCTGAAAAAG 59.020 45.455 0.00 0.00 0.00 2.27
2617 3333 3.304391 CGCGGACCAAAATCTGAAAAAGA 60.304 43.478 0.00 0.00 39.94 2.52
2619 3335 4.622740 GCGGACCAAAATCTGAAAAAGATG 59.377 41.667 0.00 0.00 45.37 2.90
2620 3336 5.772521 CGGACCAAAATCTGAAAAAGATGT 58.227 37.500 0.00 0.00 45.37 3.06
2621 3337 6.569610 GCGGACCAAAATCTGAAAAAGATGTA 60.570 38.462 0.00 0.00 45.37 2.29
2622 3338 7.538575 CGGACCAAAATCTGAAAAAGATGTAT 58.461 34.615 0.00 0.00 45.37 2.29
2623 3339 7.698130 CGGACCAAAATCTGAAAAAGATGTATC 59.302 37.037 0.00 0.00 45.37 2.24
2624 3340 8.522830 GGACCAAAATCTGAAAAAGATGTATCA 58.477 33.333 0.00 0.00 45.37 2.15
2625 3341 9.912634 GACCAAAATCTGAAAAAGATGTATCAA 57.087 29.630 0.00 0.00 45.37 2.57
2626 3342 9.696917 ACCAAAATCTGAAAAAGATGTATCAAC 57.303 29.630 0.00 0.00 45.37 3.18
2627 3343 9.918630 CCAAAATCTGAAAAAGATGTATCAACT 57.081 29.630 0.00 0.00 45.37 3.16
2629 3345 9.918630 AAAATCTGAAAAAGATGTATCAACTGG 57.081 29.630 0.00 0.00 45.37 4.00
2630 3346 8.641498 AATCTGAAAAAGATGTATCAACTGGT 57.359 30.769 0.00 0.00 45.37 4.00
2631 3347 8.641498 ATCTGAAAAAGATGTATCAACTGGTT 57.359 30.769 0.00 0.00 44.36 3.67
2632 3348 8.463930 TCTGAAAAAGATGTATCAACTGGTTT 57.536 30.769 0.00 0.00 0.00 3.27
2633 3349 8.352201 TCTGAAAAAGATGTATCAACTGGTTTG 58.648 33.333 0.00 0.00 36.42 2.93
2634 3350 6.922957 TGAAAAAGATGTATCAACTGGTTTGC 59.077 34.615 0.00 0.00 34.88 3.68
2635 3351 5.391312 AAAGATGTATCAACTGGTTTGCC 57.609 39.130 0.00 0.00 34.88 4.52
2636 3352 4.032960 AGATGTATCAACTGGTTTGCCA 57.967 40.909 0.00 0.00 43.73 4.92
2637 3353 4.406456 AGATGTATCAACTGGTTTGCCAA 58.594 39.130 0.00 0.00 45.51 4.52
2638 3354 4.832266 AGATGTATCAACTGGTTTGCCAAA 59.168 37.500 0.00 0.00 45.51 3.28
2639 3355 5.481473 AGATGTATCAACTGGTTTGCCAAAT 59.519 36.000 0.00 0.00 45.51 2.32
2640 3356 4.880759 TGTATCAACTGGTTTGCCAAATG 58.119 39.130 0.00 0.00 45.51 2.32
2641 3357 4.586421 TGTATCAACTGGTTTGCCAAATGA 59.414 37.500 0.00 0.00 45.51 2.57
2642 3358 3.451141 TCAACTGGTTTGCCAAATGAC 57.549 42.857 0.00 0.00 45.51 3.06
2643 3359 2.102252 TCAACTGGTTTGCCAAATGACC 59.898 45.455 0.00 0.00 45.51 4.02
2644 3360 2.086610 ACTGGTTTGCCAAATGACCT 57.913 45.000 0.00 0.00 45.51 3.85
2645 3361 3.237268 ACTGGTTTGCCAAATGACCTA 57.763 42.857 0.00 0.00 45.51 3.08
2646 3362 2.890945 ACTGGTTTGCCAAATGACCTAC 59.109 45.455 0.00 0.00 45.51 3.18
2647 3363 2.890311 CTGGTTTGCCAAATGACCTACA 59.110 45.455 0.00 0.00 45.51 2.74
2648 3364 3.505386 TGGTTTGCCAAATGACCTACAT 58.495 40.909 0.00 0.00 42.83 2.29
2649 3365 3.509575 TGGTTTGCCAAATGACCTACATC 59.490 43.478 0.00 0.00 42.83 3.06
2650 3366 3.763897 GGTTTGCCAAATGACCTACATCT 59.236 43.478 0.00 0.00 34.76 2.90
2651 3367 4.220602 GGTTTGCCAAATGACCTACATCTT 59.779 41.667 0.00 0.00 34.76 2.40
2652 3368 5.279456 GGTTTGCCAAATGACCTACATCTTT 60.279 40.000 0.00 0.00 34.76 2.52
2653 3369 6.223120 GTTTGCCAAATGACCTACATCTTTT 58.777 36.000 0.00 0.00 38.38 2.27
2654 3370 5.389859 TGCCAAATGACCTACATCTTTTG 57.610 39.130 6.99 6.99 40.68 2.44
2655 3371 4.176271 GCCAAATGACCTACATCTTTTGC 58.824 43.478 8.03 0.00 40.12 3.68
2656 3372 4.321899 GCCAAATGACCTACATCTTTTGCA 60.322 41.667 8.03 0.00 40.12 4.08
2657 3373 5.163513 CCAAATGACCTACATCTTTTGCAC 58.836 41.667 8.03 0.00 40.12 4.57
2658 3374 5.278907 CCAAATGACCTACATCTTTTGCACA 60.279 40.000 8.03 0.00 40.12 4.57
2659 3375 6.392354 CAAATGACCTACATCTTTTGCACAT 58.608 36.000 0.00 0.00 37.10 3.21
2660 3376 5.824904 ATGACCTACATCTTTTGCACATC 57.175 39.130 0.00 0.00 33.46 3.06
2661 3377 4.650734 TGACCTACATCTTTTGCACATCA 58.349 39.130 0.00 0.00 0.00 3.07
2662 3378 4.696877 TGACCTACATCTTTTGCACATCAG 59.303 41.667 0.00 0.00 0.00 2.90
2663 3379 4.910195 ACCTACATCTTTTGCACATCAGA 58.090 39.130 0.00 0.00 0.00 3.27
2664 3380 5.503927 ACCTACATCTTTTGCACATCAGAT 58.496 37.500 0.00 0.00 0.00 2.90
2665 3381 5.948162 ACCTACATCTTTTGCACATCAGATT 59.052 36.000 0.00 0.00 0.00 2.40
2666 3382 6.435277 ACCTACATCTTTTGCACATCAGATTT 59.565 34.615 0.00 0.00 0.00 2.17
2667 3383 7.039504 ACCTACATCTTTTGCACATCAGATTTT 60.040 33.333 0.00 0.00 0.00 1.82
2668 3384 7.816031 CCTACATCTTTTGCACATCAGATTTTT 59.184 33.333 0.00 0.00 0.00 1.94
2669 3385 7.647907 ACATCTTTTGCACATCAGATTTTTC 57.352 32.000 0.00 0.00 0.00 2.29
2670 3386 7.211573 ACATCTTTTGCACATCAGATTTTTCA 58.788 30.769 0.00 0.00 0.00 2.69
2671 3387 7.170320 ACATCTTTTGCACATCAGATTTTTCAC 59.830 33.333 0.00 0.00 0.00 3.18
2672 3388 6.571605 TCTTTTGCACATCAGATTTTTCACA 58.428 32.000 0.00 0.00 0.00 3.58
2673 3389 6.698329 TCTTTTGCACATCAGATTTTTCACAG 59.302 34.615 0.00 0.00 0.00 3.66
2674 3390 3.904571 TGCACATCAGATTTTTCACAGC 58.095 40.909 0.00 0.00 0.00 4.40
2675 3391 3.318557 TGCACATCAGATTTTTCACAGCA 59.681 39.130 0.00 0.00 0.00 4.41
2676 3392 3.918591 GCACATCAGATTTTTCACAGCAG 59.081 43.478 0.00 0.00 0.00 4.24
2677 3393 4.320714 GCACATCAGATTTTTCACAGCAGA 60.321 41.667 0.00 0.00 0.00 4.26
2678 3394 5.621555 GCACATCAGATTTTTCACAGCAGAT 60.622 40.000 0.00 0.00 0.00 2.90
2679 3395 6.387465 CACATCAGATTTTTCACAGCAGATT 58.613 36.000 0.00 0.00 0.00 2.40
2680 3396 6.866770 CACATCAGATTTTTCACAGCAGATTT 59.133 34.615 0.00 0.00 0.00 2.17
2681 3397 7.384115 CACATCAGATTTTTCACAGCAGATTTT 59.616 33.333 0.00 0.00 0.00 1.82
2682 3398 7.929785 ACATCAGATTTTTCACAGCAGATTTTT 59.070 29.630 0.00 0.00 0.00 1.94
2683 3399 7.935338 TCAGATTTTTCACAGCAGATTTTTC 57.065 32.000 0.00 0.00 0.00 2.29
2684 3400 7.490840 TCAGATTTTTCACAGCAGATTTTTCA 58.509 30.769 0.00 0.00 0.00 2.69
2685 3401 7.436080 TCAGATTTTTCACAGCAGATTTTTCAC 59.564 33.333 0.00 0.00 0.00 3.18
2686 3402 7.223193 CAGATTTTTCACAGCAGATTTTTCACA 59.777 33.333 0.00 0.00 0.00 3.58
2687 3403 7.765360 AGATTTTTCACAGCAGATTTTTCACAA 59.235 29.630 0.00 0.00 0.00 3.33
2688 3404 6.645700 TTTTCACAGCAGATTTTTCACAAC 57.354 33.333 0.00 0.00 0.00 3.32
2689 3405 5.581126 TTCACAGCAGATTTTTCACAACT 57.419 34.783 0.00 0.00 0.00 3.16
2690 3406 4.923893 TCACAGCAGATTTTTCACAACTG 58.076 39.130 0.00 0.00 0.00 3.16
2695 3411 5.723492 GCAGATTTTTCACAACTGCTTTT 57.277 34.783 0.00 0.00 46.66 2.27
2696 3412 6.826893 GCAGATTTTTCACAACTGCTTTTA 57.173 33.333 0.00 0.00 46.66 1.52
2697 3413 6.870517 GCAGATTTTTCACAACTGCTTTTAG 58.129 36.000 0.00 0.00 46.66 1.85
2698 3414 6.697019 GCAGATTTTTCACAACTGCTTTTAGA 59.303 34.615 0.00 0.00 46.66 2.10
2699 3415 7.222611 GCAGATTTTTCACAACTGCTTTTAGAA 59.777 33.333 0.00 0.00 46.66 2.10
2700 3416 9.086336 CAGATTTTTCACAACTGCTTTTAGAAA 57.914 29.630 0.00 0.00 0.00 2.52
2701 3417 9.822185 AGATTTTTCACAACTGCTTTTAGAAAT 57.178 25.926 0.00 0.00 0.00 2.17
2703 3419 8.419076 TTTTTCACAACTGCTTTTAGAAATCC 57.581 30.769 0.00 0.00 0.00 3.01
2704 3420 6.707440 TTCACAACTGCTTTTAGAAATCCA 57.293 33.333 0.00 0.00 0.00 3.41
2705 3421 6.072112 TCACAACTGCTTTTAGAAATCCAC 57.928 37.500 0.00 0.00 0.00 4.02
2706 3422 5.592282 TCACAACTGCTTTTAGAAATCCACA 59.408 36.000 0.00 0.00 0.00 4.17
2707 3423 5.916883 CACAACTGCTTTTAGAAATCCACAG 59.083 40.000 0.00 0.00 0.00 3.66
2708 3424 4.773323 ACTGCTTTTAGAAATCCACAGC 57.227 40.909 0.00 0.00 0.00 4.40
2709 3425 3.507622 ACTGCTTTTAGAAATCCACAGCC 59.492 43.478 0.00 0.00 0.00 4.85
2710 3426 2.487762 TGCTTTTAGAAATCCACAGCCG 59.512 45.455 0.00 0.00 0.00 5.52
2711 3427 2.747446 GCTTTTAGAAATCCACAGCCGA 59.253 45.455 0.00 0.00 0.00 5.54
2712 3428 3.190535 GCTTTTAGAAATCCACAGCCGAA 59.809 43.478 0.00 0.00 0.00 4.30
2713 3429 4.723248 CTTTTAGAAATCCACAGCCGAAC 58.277 43.478 0.00 0.00 0.00 3.95
2714 3430 2.396590 TAGAAATCCACAGCCGAACC 57.603 50.000 0.00 0.00 0.00 3.62
2715 3431 0.400213 AGAAATCCACAGCCGAACCA 59.600 50.000 0.00 0.00 0.00 3.67
2716 3432 1.202879 AGAAATCCACAGCCGAACCAA 60.203 47.619 0.00 0.00 0.00 3.67
2717 3433 1.611491 GAAATCCACAGCCGAACCAAA 59.389 47.619 0.00 0.00 0.00 3.28
2718 3434 1.923356 AATCCACAGCCGAACCAAAT 58.077 45.000 0.00 0.00 0.00 2.32
2719 3435 2.799126 ATCCACAGCCGAACCAAATA 57.201 45.000 0.00 0.00 0.00 1.40
2720 3436 1.816074 TCCACAGCCGAACCAAATAC 58.184 50.000 0.00 0.00 0.00 1.89
2721 3437 0.446222 CCACAGCCGAACCAAATACG 59.554 55.000 0.00 0.00 0.00 3.06
2722 3438 1.434555 CACAGCCGAACCAAATACGA 58.565 50.000 0.00 0.00 0.00 3.43
2723 3439 1.127951 CACAGCCGAACCAAATACGAC 59.872 52.381 0.00 0.00 0.00 4.34
2724 3440 0.725117 CAGCCGAACCAAATACGACC 59.275 55.000 0.00 0.00 0.00 4.79
2725 3441 0.738412 AGCCGAACCAAATACGACCG 60.738 55.000 0.00 0.00 0.00 4.79
2735 3451 4.153986 CCAAATACGACCGTAGTATAGCG 58.846 47.826 8.28 0.00 34.05 4.26
2833 3730 1.699656 GCGTGTGCTGGCTGTCATAG 61.700 60.000 0.00 0.00 38.39 2.23
2834 3731 0.108662 CGTGTGCTGGCTGTCATAGA 60.109 55.000 0.00 0.00 0.00 1.98
2835 3732 1.649664 GTGTGCTGGCTGTCATAGAG 58.350 55.000 0.00 0.00 0.00 2.43
2900 3805 6.855836 TGACTGTTAATCTGATTTTGATGGC 58.144 36.000 8.38 0.00 0.00 4.40
2906 3811 7.828717 TGTTAATCTGATTTTGATGGCTGTAGA 59.171 33.333 8.38 0.00 0.00 2.59
2932 3837 9.448438 AGTTGTTTAGTTGCATCATAAGACATA 57.552 29.630 0.00 0.00 0.00 2.29
2939 3844 8.662781 AGTTGCATCATAAGACATAATTACGT 57.337 30.769 0.00 0.00 0.00 3.57
2940 3845 8.551205 AGTTGCATCATAAGACATAATTACGTG 58.449 33.333 0.00 0.00 0.00 4.49
2943 3902 7.042119 TGCATCATAAGACATAATTACGTGTGG 60.042 37.037 0.00 0.00 0.00 4.17
2958 3917 4.009675 ACGTGTGGTGCTCATTTGATTAT 58.990 39.130 0.00 0.00 0.00 1.28
2979 3941 2.233305 AGTATTCTCTCCCACCGTGT 57.767 50.000 0.00 0.00 0.00 4.49
3016 3992 5.115480 TGGAAAGAATTGTTTTCAGGTTGC 58.885 37.500 4.96 0.00 36.50 4.17
3275 4253 5.601313 ACCTGAGTACTCTCCACAAAGTTTA 59.399 40.000 23.01 0.00 39.75 2.01
3287 4265 9.063615 TCTCCACAAAGTTTAGTTTTCCTAATC 57.936 33.333 0.00 0.00 35.59 1.75
3322 4300 8.241367 GGAGTTTGTTTTCTGTCAGTTCTTTTA 58.759 33.333 0.00 0.00 0.00 1.52
3358 4336 6.821616 ATTTGTATGCATATTTTTGGGGGA 57.178 33.333 10.16 0.00 0.00 4.81
3361 4339 4.648762 TGTATGCATATTTTTGGGGGAGTG 59.351 41.667 10.16 0.00 0.00 3.51
3408 4386 7.882179 ACAAACACAAATTAGTTCATACTCCC 58.118 34.615 0.00 0.00 35.78 4.30
3409 4387 7.724061 ACAAACACAAATTAGTTCATACTCCCT 59.276 33.333 0.00 0.00 35.78 4.20
3410 4388 7.923414 AACACAAATTAGTTCATACTCCCTC 57.077 36.000 0.00 0.00 35.78 4.30
3411 4389 6.415573 ACACAAATTAGTTCATACTCCCTCC 58.584 40.000 0.00 0.00 35.78 4.30
3412 4390 5.523916 CACAAATTAGTTCATACTCCCTCCG 59.476 44.000 0.00 0.00 35.78 4.63
3413 4391 4.338379 AATTAGTTCATACTCCCTCCGC 57.662 45.455 0.00 0.00 35.78 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
363 366 6.695278 CGATACCGTCCATTATTGCAAATTTT 59.305 34.615 1.71 0.00 0.00 1.82
381 384 5.054477 ACTTATCCAAATCAACCGATACCG 58.946 41.667 0.00 0.00 0.00 4.02
541 545 2.424302 CCACCACTTTCGTCCGGT 59.576 61.111 0.00 0.00 0.00 5.28
615 619 3.425193 GCATTTTCGTGTCATTTGGTGTC 59.575 43.478 0.00 0.00 0.00 3.67
616 620 3.380142 GCATTTTCGTGTCATTTGGTGT 58.620 40.909 0.00 0.00 0.00 4.16
617 621 2.404693 CGCATTTTCGTGTCATTTGGTG 59.595 45.455 0.00 0.00 0.00 4.17
618 622 2.034053 ACGCATTTTCGTGTCATTTGGT 59.966 40.909 0.00 0.00 41.62 3.67
619 623 2.660490 ACGCATTTTCGTGTCATTTGG 58.340 42.857 0.00 0.00 41.62 3.28
628 632 1.129009 CGTACGCACGCATTTTCGT 59.871 52.632 0.52 0.00 42.05 3.85
629 633 3.928353 CGTACGCACGCATTTTCG 58.072 55.556 0.52 0.00 42.05 3.46
640 644 1.226018 GGAAAGCATGCACGTACGC 60.226 57.895 21.98 0.00 0.00 4.42
686 693 1.713297 ACCTCACGGTAAAGGTCTGT 58.287 50.000 8.23 0.00 42.28 3.41
694 701 2.662309 GTCAGGGACCTCACGGTAA 58.338 57.895 0.00 0.00 45.73 2.85
695 702 4.428845 GTCAGGGACCTCACGGTA 57.571 61.111 0.00 0.00 45.73 4.02
714 1340 6.817765 ACATATTTGACATTTCGTCCTGTT 57.182 33.333 0.00 0.00 44.71 3.16
720 1346 5.941058 TGTGGGTACATATTTGACATTTCGT 59.059 36.000 0.00 0.00 0.00 3.85
735 1361 0.244450 GTTCGACGGATGTGGGTACA 59.756 55.000 0.00 0.00 41.89 2.90
785 1415 2.280119 TGGACACTGCACGTCTGC 60.280 61.111 10.52 0.00 44.52 4.26
786 1416 3.630204 GTGGACACTGCACGTCTG 58.370 61.111 10.52 0.00 33.73 3.51
861 1500 7.155328 CACGAGCCATTTATACTAGAAGGATT 58.845 38.462 0.00 0.00 0.00 3.01
862 1501 6.692486 CACGAGCCATTTATACTAGAAGGAT 58.308 40.000 0.00 0.00 0.00 3.24
863 1502 5.509163 GCACGAGCCATTTATACTAGAAGGA 60.509 44.000 0.00 0.00 33.58 3.36
864 1503 4.686554 GCACGAGCCATTTATACTAGAAGG 59.313 45.833 0.00 0.00 33.58 3.46
896 1535 1.247567 AGCTTGATTTGGTGAACGGG 58.752 50.000 0.00 0.00 0.00 5.28
945 1584 2.475852 CGTACAGCACTCTCTAACCGTC 60.476 54.545 0.00 0.00 0.00 4.79
988 1643 3.923461 GTGATCTCCATCGATCGAATTCC 59.077 47.826 23.50 8.34 42.10 3.01
1370 2027 1.952296 AGAAGCAGAACCAAGCAACAG 59.048 47.619 0.00 0.00 0.00 3.16
1383 2041 1.269257 TGTGAGTCGTGACAGAAGCAG 60.269 52.381 2.44 0.00 0.00 4.24
1418 2082 1.226491 GCCATGCATGCACGTTCTC 60.226 57.895 25.37 5.51 0.00 2.87
1505 2195 0.035725 CCTGTTGAGCTGGATCTGCA 60.036 55.000 12.31 0.00 38.33 4.41
1506 2196 0.035630 ACCTGTTGAGCTGGATCTGC 60.036 55.000 0.00 0.00 39.25 4.26
1507 2197 2.234661 TGTACCTGTTGAGCTGGATCTG 59.765 50.000 0.00 0.00 39.25 2.90
1508 2198 2.499289 CTGTACCTGTTGAGCTGGATCT 59.501 50.000 0.00 0.00 39.25 2.75
1509 2199 2.419297 CCTGTACCTGTTGAGCTGGATC 60.419 54.545 0.00 0.00 39.25 3.36
1630 2320 1.566018 GGCGTGGTGAAGTCCTTTCG 61.566 60.000 0.00 0.00 38.71 3.46
1665 2355 3.598715 ACGGTGGTTCTCGCACGA 61.599 61.111 0.00 0.00 0.00 4.35
1746 2436 1.226888 GACGACGGCATAGGTGTCC 60.227 63.158 0.00 0.00 0.00 4.02
1983 2692 1.202879 AGCACCATGTTCCCGAAGAAA 60.203 47.619 0.00 0.00 35.85 2.52
2031 2740 1.512310 GCTCGAGTTCAGGACGTCG 60.512 63.158 15.13 0.00 33.27 5.12
2187 2903 2.819595 CGTCCGGGCAGAACATGG 60.820 66.667 6.96 0.00 0.00 3.66
2392 3108 5.699915 CGATCAATCCAATGAGTAGCAGATT 59.300 40.000 0.00 0.00 31.76 2.40
2404 3120 7.456725 AGACCATAAATCTCGATCAATCCAAT 58.543 34.615 0.00 0.00 0.00 3.16
2434 3150 4.918810 AAAAGGTGAACCAAACAGCTAG 57.081 40.909 1.62 0.00 43.70 3.42
2440 3156 4.460505 CGTCGATAAAAGGTGAACCAAAC 58.539 43.478 1.62 0.00 38.89 2.93
2441 3157 3.499157 CCGTCGATAAAAGGTGAACCAAA 59.501 43.478 1.62 0.00 38.89 3.28
2442 3158 3.068560 CCGTCGATAAAAGGTGAACCAA 58.931 45.455 1.62 0.00 38.89 3.67
2443 3159 2.299582 TCCGTCGATAAAAGGTGAACCA 59.700 45.455 1.62 0.00 38.89 3.67
2444 3160 2.963432 TCCGTCGATAAAAGGTGAACC 58.037 47.619 0.00 0.00 0.00 3.62
2445 3161 5.541098 AAATCCGTCGATAAAAGGTGAAC 57.459 39.130 0.00 0.00 0.00 3.18
2446 3162 4.327898 CGAAATCCGTCGATAAAAGGTGAA 59.672 41.667 0.00 0.00 43.86 3.18
2447 3163 3.861113 CGAAATCCGTCGATAAAAGGTGA 59.139 43.478 0.00 0.00 43.86 4.02
2448 3164 3.543460 GCGAAATCCGTCGATAAAAGGTG 60.543 47.826 0.00 0.00 43.86 4.00
2449 3165 2.606272 GCGAAATCCGTCGATAAAAGGT 59.394 45.455 0.00 0.00 43.86 3.50
2450 3166 2.864343 AGCGAAATCCGTCGATAAAAGG 59.136 45.455 0.00 0.00 43.86 3.11
2451 3167 3.306166 ACAGCGAAATCCGTCGATAAAAG 59.694 43.478 0.00 0.00 43.86 2.27
2452 3168 3.255725 ACAGCGAAATCCGTCGATAAAA 58.744 40.909 0.00 0.00 43.86 1.52
2453 3169 2.855963 GACAGCGAAATCCGTCGATAAA 59.144 45.455 0.00 0.00 43.86 1.40
2454 3170 2.456989 GACAGCGAAATCCGTCGATAA 58.543 47.619 0.00 0.00 43.86 1.75
2455 3171 2.115348 GACAGCGAAATCCGTCGATA 57.885 50.000 0.00 0.00 43.86 2.92
2456 3172 2.959275 GACAGCGAAATCCGTCGAT 58.041 52.632 0.00 0.00 43.86 3.59
2457 3173 4.470876 GACAGCGAAATCCGTCGA 57.529 55.556 0.00 0.00 43.86 4.20
2458 3174 2.987593 CGACAGCGAAATCCGTCG 59.012 61.111 0.00 0.00 44.34 5.12
2459 3175 1.702299 CACGACAGCGAAATCCGTC 59.298 57.895 0.00 0.00 41.64 4.79
2460 3176 2.380410 GCACGACAGCGAAATCCGT 61.380 57.895 0.00 0.00 41.64 4.69
2461 3177 2.283780 CTGCACGACAGCGAAATCCG 62.284 60.000 0.00 0.00 40.19 4.18
2462 3178 1.421485 CTGCACGACAGCGAAATCC 59.579 57.895 0.00 0.00 40.19 3.01
2471 3187 2.736721 GTTTAGATTCTGCTGCACGACA 59.263 45.455 0.00 0.00 0.00 4.35
2472 3188 2.094417 GGTTTAGATTCTGCTGCACGAC 59.906 50.000 0.00 0.00 0.00 4.34
2473 3189 2.289382 TGGTTTAGATTCTGCTGCACGA 60.289 45.455 0.00 0.00 0.00 4.35
2474 3190 2.076100 TGGTTTAGATTCTGCTGCACG 58.924 47.619 0.00 0.00 0.00 5.34
2475 3191 4.479619 CTTTGGTTTAGATTCTGCTGCAC 58.520 43.478 0.00 0.00 0.00 4.57
2476 3192 3.507233 CCTTTGGTTTAGATTCTGCTGCA 59.493 43.478 0.88 0.88 0.00 4.41
2477 3193 3.119352 CCCTTTGGTTTAGATTCTGCTGC 60.119 47.826 0.00 0.00 0.00 5.25
2478 3194 3.119352 GCCCTTTGGTTTAGATTCTGCTG 60.119 47.826 0.00 0.00 0.00 4.41
2479 3195 3.092301 GCCCTTTGGTTTAGATTCTGCT 58.908 45.455 0.00 0.00 0.00 4.24
2480 3196 2.159379 CGCCCTTTGGTTTAGATTCTGC 60.159 50.000 0.00 0.00 0.00 4.26
2481 3197 3.343617 TCGCCCTTTGGTTTAGATTCTG 58.656 45.455 0.00 0.00 0.00 3.02
2482 3198 3.713826 TCGCCCTTTGGTTTAGATTCT 57.286 42.857 0.00 0.00 0.00 2.40
2483 3199 3.119602 GGTTCGCCCTTTGGTTTAGATTC 60.120 47.826 0.00 0.00 0.00 2.52
2484 3200 2.823747 GGTTCGCCCTTTGGTTTAGATT 59.176 45.455 0.00 0.00 0.00 2.40
2485 3201 2.443416 GGTTCGCCCTTTGGTTTAGAT 58.557 47.619 0.00 0.00 0.00 1.98
2486 3202 1.900245 GGTTCGCCCTTTGGTTTAGA 58.100 50.000 0.00 0.00 0.00 2.10
2498 3214 1.215382 GGATTTTGCTGGGTTCGCC 59.785 57.895 0.00 0.00 0.00 5.54
2499 3215 1.154035 CGGATTTTGCTGGGTTCGC 60.154 57.895 0.00 0.00 0.00 4.70
2500 3216 1.094785 ATCGGATTTTGCTGGGTTCG 58.905 50.000 0.00 0.00 0.00 3.95
2501 3217 3.056891 TGAAATCGGATTTTGCTGGGTTC 60.057 43.478 16.49 2.45 31.47 3.62
2502 3218 2.896685 TGAAATCGGATTTTGCTGGGTT 59.103 40.909 16.49 0.00 31.47 4.11
2503 3219 2.493278 CTGAAATCGGATTTTGCTGGGT 59.507 45.455 16.49 0.00 31.47 4.51
2504 3220 2.754552 TCTGAAATCGGATTTTGCTGGG 59.245 45.455 16.49 5.16 31.47 4.45
2505 3221 4.439305 TTCTGAAATCGGATTTTGCTGG 57.561 40.909 16.49 6.59 31.47 4.85
2506 3222 6.237384 CGAATTTCTGAAATCGGATTTTGCTG 60.237 38.462 16.49 9.31 31.47 4.41
2507 3223 5.801947 CGAATTTCTGAAATCGGATTTTGCT 59.198 36.000 16.49 0.00 31.47 3.91
2508 3224 5.499176 GCGAATTTCTGAAATCGGATTTTGC 60.499 40.000 23.30 16.50 32.17 3.68
2509 3225 5.801947 AGCGAATTTCTGAAATCGGATTTTG 59.198 36.000 23.30 12.52 31.47 2.44
2510 3226 5.801947 CAGCGAATTTCTGAAATCGGATTTT 59.198 36.000 23.30 8.87 33.54 1.82
2511 3227 5.106157 ACAGCGAATTTCTGAAATCGGATTT 60.106 36.000 23.30 15.45 35.61 2.17
2512 3228 4.396166 ACAGCGAATTTCTGAAATCGGATT 59.604 37.500 23.30 0.00 35.61 3.01
2513 3229 3.941483 ACAGCGAATTTCTGAAATCGGAT 59.059 39.130 23.30 13.72 35.61 4.18
2514 3230 3.334691 ACAGCGAATTTCTGAAATCGGA 58.665 40.909 23.30 0.00 35.61 4.55
2515 3231 3.125146 TGACAGCGAATTTCTGAAATCGG 59.875 43.478 23.30 16.69 35.61 4.18
2516 3232 4.326413 TGACAGCGAATTTCTGAAATCG 57.674 40.909 15.43 18.54 35.61 3.34
2517 3233 6.991485 TTTTGACAGCGAATTTCTGAAATC 57.009 33.333 15.43 8.71 35.61 2.17
2518 3234 7.373493 AGATTTTGACAGCGAATTTCTGAAAT 58.627 30.769 9.76 9.76 35.61 2.17
2519 3235 6.738114 AGATTTTGACAGCGAATTTCTGAAA 58.262 32.000 5.15 5.15 35.61 2.69
2520 3236 6.317789 AGATTTTGACAGCGAATTTCTGAA 57.682 33.333 13.48 0.00 35.61 3.02
2521 3237 5.947228 AGATTTTGACAGCGAATTTCTGA 57.053 34.783 13.48 0.00 35.61 3.27
2522 3238 7.061094 GGTTTAGATTTTGACAGCGAATTTCTG 59.939 37.037 7.00 7.00 37.56 3.02
2523 3239 7.084486 GGTTTAGATTTTGACAGCGAATTTCT 58.916 34.615 0.00 0.00 0.00 2.52
2524 3240 6.861055 TGGTTTAGATTTTGACAGCGAATTTC 59.139 34.615 0.00 0.00 0.00 2.17
2525 3241 6.744112 TGGTTTAGATTTTGACAGCGAATTT 58.256 32.000 0.00 0.00 0.00 1.82
2526 3242 6.325919 TGGTTTAGATTTTGACAGCGAATT 57.674 33.333 0.00 0.00 0.00 2.17
2527 3243 5.957842 TGGTTTAGATTTTGACAGCGAAT 57.042 34.783 0.00 0.00 0.00 3.34
2528 3244 5.759506 TTGGTTTAGATTTTGACAGCGAA 57.240 34.783 0.00 0.00 0.00 4.70
2529 3245 5.759506 TTTGGTTTAGATTTTGACAGCGA 57.240 34.783 0.00 0.00 0.00 4.93
2530 3246 5.107875 GCTTTTGGTTTAGATTTTGACAGCG 60.108 40.000 0.00 0.00 0.00 5.18
2531 3247 5.107875 CGCTTTTGGTTTAGATTTTGACAGC 60.108 40.000 0.00 0.00 0.00 4.40
2532 3248 5.402270 CCGCTTTTGGTTTAGATTTTGACAG 59.598 40.000 0.00 0.00 0.00 3.51
2533 3249 5.067936 TCCGCTTTTGGTTTAGATTTTGACA 59.932 36.000 0.00 0.00 0.00 3.58
2534 3250 5.525199 TCCGCTTTTGGTTTAGATTTTGAC 58.475 37.500 0.00 0.00 0.00 3.18
2535 3251 5.776173 TCCGCTTTTGGTTTAGATTTTGA 57.224 34.783 0.00 0.00 0.00 2.69
2536 3252 5.107491 GCTTCCGCTTTTGGTTTAGATTTTG 60.107 40.000 0.00 0.00 0.00 2.44
2537 3253 4.988540 GCTTCCGCTTTTGGTTTAGATTTT 59.011 37.500 0.00 0.00 0.00 1.82
2538 3254 4.038642 TGCTTCCGCTTTTGGTTTAGATTT 59.961 37.500 0.00 0.00 36.97 2.17
2539 3255 3.572255 TGCTTCCGCTTTTGGTTTAGATT 59.428 39.130 0.00 0.00 36.97 2.40
2540 3256 3.153919 TGCTTCCGCTTTTGGTTTAGAT 58.846 40.909 0.00 0.00 36.97 1.98
2541 3257 2.552315 CTGCTTCCGCTTTTGGTTTAGA 59.448 45.455 0.00 0.00 36.97 2.10
2542 3258 2.922335 GCTGCTTCCGCTTTTGGTTTAG 60.922 50.000 0.00 0.00 36.97 1.85
2543 3259 1.000717 GCTGCTTCCGCTTTTGGTTTA 60.001 47.619 0.00 0.00 36.97 2.01
2544 3260 0.249447 GCTGCTTCCGCTTTTGGTTT 60.249 50.000 0.00 0.00 36.97 3.27
2545 3261 1.363807 GCTGCTTCCGCTTTTGGTT 59.636 52.632 0.00 0.00 36.97 3.67
2546 3262 2.564721 GGCTGCTTCCGCTTTTGGT 61.565 57.895 0.00 0.00 36.97 3.67
2547 3263 2.259511 GGCTGCTTCCGCTTTTGG 59.740 61.111 0.00 0.00 36.97 3.28
2548 3264 2.086251 TTGGGCTGCTTCCGCTTTTG 62.086 55.000 0.00 0.00 36.97 2.44
2549 3265 1.398958 TTTGGGCTGCTTCCGCTTTT 61.399 50.000 0.00 0.00 36.97 2.27
2550 3266 1.398958 TTTTGGGCTGCTTCCGCTTT 61.399 50.000 0.00 0.00 36.97 3.51
2551 3267 1.832167 TTTTGGGCTGCTTCCGCTT 60.832 52.632 0.00 0.00 36.97 4.68
2552 3268 2.203480 TTTTGGGCTGCTTCCGCT 60.203 55.556 0.00 0.00 36.97 5.52
2553 3269 2.049156 GTTTTGGGCTGCTTCCGC 60.049 61.111 0.00 0.00 0.00 5.54
2554 3270 1.135402 GTATGTTTTGGGCTGCTTCCG 60.135 52.381 0.00 0.00 0.00 4.30
2555 3271 2.171003 AGTATGTTTTGGGCTGCTTCC 58.829 47.619 0.00 0.00 0.00 3.46
2556 3272 3.942130 AAGTATGTTTTGGGCTGCTTC 57.058 42.857 0.00 0.00 0.00 3.86
2557 3273 3.006859 GGAAAGTATGTTTTGGGCTGCTT 59.993 43.478 0.00 0.00 0.00 3.91
2558 3274 2.562738 GGAAAGTATGTTTTGGGCTGCT 59.437 45.455 0.00 0.00 0.00 4.24
2559 3275 2.298729 TGGAAAGTATGTTTTGGGCTGC 59.701 45.455 0.00 0.00 0.00 5.25
2560 3276 4.599047 TTGGAAAGTATGTTTTGGGCTG 57.401 40.909 0.00 0.00 0.00 4.85
2561 3277 5.622346 TTTTGGAAAGTATGTTTTGGGCT 57.378 34.783 0.00 0.00 0.00 5.19
2562 3278 6.147656 CAGATTTTGGAAAGTATGTTTTGGGC 59.852 38.462 0.00 0.00 0.00 5.36
2563 3279 7.441017 TCAGATTTTGGAAAGTATGTTTTGGG 58.559 34.615 0.00 0.00 0.00 4.12
2564 3280 9.492973 AATCAGATTTTGGAAAGTATGTTTTGG 57.507 29.630 0.00 0.00 0.00 3.28
2566 3282 9.710900 GGAATCAGATTTTGGAAAGTATGTTTT 57.289 29.630 0.00 0.00 0.00 2.43
2567 3283 8.028938 CGGAATCAGATTTTGGAAAGTATGTTT 58.971 33.333 0.00 0.00 0.00 2.83
2568 3284 7.538575 CGGAATCAGATTTTGGAAAGTATGTT 58.461 34.615 0.00 0.00 0.00 2.71
2569 3285 6.404734 GCGGAATCAGATTTTGGAAAGTATGT 60.405 38.462 0.00 0.00 0.00 2.29
2570 3286 5.973565 GCGGAATCAGATTTTGGAAAGTATG 59.026 40.000 0.00 0.00 0.00 2.39
2571 3287 5.067805 GGCGGAATCAGATTTTGGAAAGTAT 59.932 40.000 0.00 0.00 0.00 2.12
2572 3288 4.398044 GGCGGAATCAGATTTTGGAAAGTA 59.602 41.667 0.00 0.00 0.00 2.24
2573 3289 3.193479 GGCGGAATCAGATTTTGGAAAGT 59.807 43.478 0.00 0.00 0.00 2.66
2574 3290 3.731867 CGGCGGAATCAGATTTTGGAAAG 60.732 47.826 0.00 0.00 0.00 2.62
2575 3291 2.163412 CGGCGGAATCAGATTTTGGAAA 59.837 45.455 0.00 0.00 0.00 3.13
2576 3292 1.742831 CGGCGGAATCAGATTTTGGAA 59.257 47.619 0.00 0.00 0.00 3.53
2577 3293 1.378531 CGGCGGAATCAGATTTTGGA 58.621 50.000 0.00 0.00 0.00 3.53
2578 3294 0.248621 GCGGCGGAATCAGATTTTGG 60.249 55.000 9.78 0.00 0.00 3.28
2579 3295 0.589729 CGCGGCGGAATCAGATTTTG 60.590 55.000 15.84 0.00 0.00 2.44
2580 3296 1.721487 CGCGGCGGAATCAGATTTT 59.279 52.632 15.84 0.00 0.00 1.82
2581 3297 3.409856 CGCGGCGGAATCAGATTT 58.590 55.556 15.84 0.00 0.00 2.17
2592 3308 3.124921 AGATTTTGGTCCGCGGCG 61.125 61.111 23.51 16.78 0.00 6.46
2593 3309 1.582610 TTCAGATTTTGGTCCGCGGC 61.583 55.000 23.51 16.04 0.00 6.53
2594 3310 0.878416 TTTCAGATTTTGGTCCGCGG 59.122 50.000 22.12 22.12 0.00 6.46
2595 3311 2.697431 TTTTCAGATTTTGGTCCGCG 57.303 45.000 0.00 0.00 0.00 6.46
2596 3312 4.237349 TCTTTTTCAGATTTTGGTCCGC 57.763 40.909 0.00 0.00 0.00 5.54
2597 3313 5.772521 ACATCTTTTTCAGATTTTGGTCCG 58.227 37.500 0.00 0.00 40.67 4.79
2598 3314 8.522830 TGATACATCTTTTTCAGATTTTGGTCC 58.477 33.333 0.00 0.00 40.67 4.46
2599 3315 9.912634 TTGATACATCTTTTTCAGATTTTGGTC 57.087 29.630 0.00 0.00 40.67 4.02
2600 3316 9.696917 GTTGATACATCTTTTTCAGATTTTGGT 57.303 29.630 0.00 0.00 40.67 3.67
2601 3317 9.918630 AGTTGATACATCTTTTTCAGATTTTGG 57.081 29.630 0.00 0.00 40.67 3.28
2603 3319 9.918630 CCAGTTGATACATCTTTTTCAGATTTT 57.081 29.630 0.00 0.00 40.67 1.82
2604 3320 9.082313 ACCAGTTGATACATCTTTTTCAGATTT 57.918 29.630 0.00 0.00 40.67 2.17
2605 3321 8.641498 ACCAGTTGATACATCTTTTTCAGATT 57.359 30.769 0.00 0.00 40.67 2.40
2606 3322 8.641498 AACCAGTTGATACATCTTTTTCAGAT 57.359 30.769 0.00 0.00 43.80 2.90
2607 3323 8.352201 CAAACCAGTTGATACATCTTTTTCAGA 58.648 33.333 0.00 0.00 39.87 3.27
2608 3324 7.115378 GCAAACCAGTTGATACATCTTTTTCAG 59.885 37.037 0.00 0.00 39.87 3.02
2609 3325 6.922957 GCAAACCAGTTGATACATCTTTTTCA 59.077 34.615 0.00 0.00 39.87 2.69
2610 3326 6.366061 GGCAAACCAGTTGATACATCTTTTTC 59.634 38.462 0.00 0.00 39.87 2.29
2611 3327 6.183360 TGGCAAACCAGTTGATACATCTTTTT 60.183 34.615 0.00 0.00 42.67 1.94
2612 3328 5.304101 TGGCAAACCAGTTGATACATCTTTT 59.696 36.000 0.00 0.00 42.67 2.27
2613 3329 4.832266 TGGCAAACCAGTTGATACATCTTT 59.168 37.500 0.00 0.00 42.67 2.52
2614 3330 4.406456 TGGCAAACCAGTTGATACATCTT 58.594 39.130 0.00 0.00 42.67 2.40
2615 3331 4.032960 TGGCAAACCAGTTGATACATCT 57.967 40.909 0.00 0.00 42.67 2.90
2624 3340 8.189378 GATGTAGGTCATTTGGCAAACCAGTT 62.189 42.308 16.00 4.23 41.40 3.16
2625 3341 6.785710 GATGTAGGTCATTTGGCAAACCAGT 61.786 44.000 16.00 0.86 41.40 4.00
2626 3342 4.380867 GATGTAGGTCATTTGGCAAACCAG 60.381 45.833 16.00 8.58 41.40 4.00
2627 3343 3.509575 GATGTAGGTCATTTGGCAAACCA 59.490 43.478 16.00 1.33 39.74 3.67
2628 3344 3.763897 AGATGTAGGTCATTTGGCAAACC 59.236 43.478 16.00 13.12 36.83 3.27
2629 3345 5.391312 AAGATGTAGGTCATTTGGCAAAC 57.609 39.130 16.00 3.12 36.83 2.93
2630 3346 6.222389 CAAAAGATGTAGGTCATTTGGCAAA 58.778 36.000 16.01 16.01 34.74 3.68
2631 3347 5.782047 CAAAAGATGTAGGTCATTTGGCAA 58.218 37.500 0.00 0.00 34.74 4.52
2632 3348 4.321899 GCAAAAGATGTAGGTCATTTGGCA 60.322 41.667 6.70 0.00 37.31 4.92
2633 3349 4.176271 GCAAAAGATGTAGGTCATTTGGC 58.824 43.478 6.70 0.00 37.31 4.52
2634 3350 5.163513 GTGCAAAAGATGTAGGTCATTTGG 58.836 41.667 0.00 0.00 37.31 3.28
2635 3351 5.771469 TGTGCAAAAGATGTAGGTCATTTG 58.229 37.500 0.00 0.00 38.89 2.32
2636 3352 6.209192 TGATGTGCAAAAGATGTAGGTCATTT 59.791 34.615 0.00 0.00 36.83 2.32
2637 3353 5.711506 TGATGTGCAAAAGATGTAGGTCATT 59.288 36.000 0.00 0.00 36.83 2.57
2638 3354 5.255687 TGATGTGCAAAAGATGTAGGTCAT 58.744 37.500 0.00 0.00 39.77 3.06
2639 3355 4.650734 TGATGTGCAAAAGATGTAGGTCA 58.349 39.130 0.00 0.00 0.00 4.02
2640 3356 4.937620 TCTGATGTGCAAAAGATGTAGGTC 59.062 41.667 0.00 0.00 0.00 3.85
2641 3357 4.910195 TCTGATGTGCAAAAGATGTAGGT 58.090 39.130 0.00 0.00 0.00 3.08
2642 3358 6.446781 AATCTGATGTGCAAAAGATGTAGG 57.553 37.500 0.00 0.00 29.93 3.18
2643 3359 8.752766 AAAAATCTGATGTGCAAAAGATGTAG 57.247 30.769 0.00 0.00 29.93 2.74
2644 3360 8.358895 TGAAAAATCTGATGTGCAAAAGATGTA 58.641 29.630 0.00 0.00 29.93 2.29
2645 3361 7.170320 GTGAAAAATCTGATGTGCAAAAGATGT 59.830 33.333 0.00 0.00 29.93 3.06
2646 3362 7.170151 TGTGAAAAATCTGATGTGCAAAAGATG 59.830 33.333 0.00 0.00 29.93 2.90
2647 3363 7.211573 TGTGAAAAATCTGATGTGCAAAAGAT 58.788 30.769 0.00 0.00 0.00 2.40
2648 3364 6.571605 TGTGAAAAATCTGATGTGCAAAAGA 58.428 32.000 0.00 0.00 0.00 2.52
2649 3365 6.563381 GCTGTGAAAAATCTGATGTGCAAAAG 60.563 38.462 0.00 0.00 0.00 2.27
2650 3366 5.234757 GCTGTGAAAAATCTGATGTGCAAAA 59.765 36.000 0.00 0.00 0.00 2.44
2651 3367 4.746115 GCTGTGAAAAATCTGATGTGCAAA 59.254 37.500 0.00 0.00 0.00 3.68
2652 3368 4.202131 TGCTGTGAAAAATCTGATGTGCAA 60.202 37.500 0.00 0.00 0.00 4.08
2653 3369 3.318557 TGCTGTGAAAAATCTGATGTGCA 59.681 39.130 0.00 0.00 0.00 4.57
2654 3370 3.904571 TGCTGTGAAAAATCTGATGTGC 58.095 40.909 0.00 0.00 0.00 4.57
2655 3371 5.366829 TCTGCTGTGAAAAATCTGATGTG 57.633 39.130 0.00 0.00 0.00 3.21
2656 3372 6.585695 AATCTGCTGTGAAAAATCTGATGT 57.414 33.333 0.00 0.00 0.00 3.06
2657 3373 7.884816 AAAATCTGCTGTGAAAAATCTGATG 57.115 32.000 0.00 0.00 0.00 3.07
2658 3374 8.145767 TGAAAAATCTGCTGTGAAAAATCTGAT 58.854 29.630 0.00 0.00 0.00 2.90
2659 3375 7.436080 GTGAAAAATCTGCTGTGAAAAATCTGA 59.564 33.333 0.00 0.00 0.00 3.27
2660 3376 7.223193 TGTGAAAAATCTGCTGTGAAAAATCTG 59.777 33.333 0.00 0.00 0.00 2.90
2661 3377 7.267128 TGTGAAAAATCTGCTGTGAAAAATCT 58.733 30.769 0.00 0.00 0.00 2.40
2662 3378 7.467557 TGTGAAAAATCTGCTGTGAAAAATC 57.532 32.000 0.00 0.00 0.00 2.17
2663 3379 7.550196 AGTTGTGAAAAATCTGCTGTGAAAAAT 59.450 29.630 0.00 0.00 0.00 1.82
2664 3380 6.873076 AGTTGTGAAAAATCTGCTGTGAAAAA 59.127 30.769 0.00 0.00 0.00 1.94
2665 3381 6.310956 CAGTTGTGAAAAATCTGCTGTGAAAA 59.689 34.615 0.00 0.00 0.00 2.29
2666 3382 5.806502 CAGTTGTGAAAAATCTGCTGTGAAA 59.193 36.000 0.00 0.00 0.00 2.69
2667 3383 5.342433 CAGTTGTGAAAAATCTGCTGTGAA 58.658 37.500 0.00 0.00 0.00 3.18
2668 3384 4.734402 GCAGTTGTGAAAAATCTGCTGTGA 60.734 41.667 7.98 0.00 45.14 3.58
2669 3385 3.488310 GCAGTTGTGAAAAATCTGCTGTG 59.512 43.478 7.98 0.00 45.14 3.66
2670 3386 3.709987 GCAGTTGTGAAAAATCTGCTGT 58.290 40.909 7.98 0.00 45.14 4.40
2674 3390 8.633075 TTCTAAAAGCAGTTGTGAAAAATCTG 57.367 30.769 0.00 0.00 0.00 2.90
2675 3391 9.822185 ATTTCTAAAAGCAGTTGTGAAAAATCT 57.178 25.926 0.00 0.00 30.29 2.40
2677 3393 9.045223 GGATTTCTAAAAGCAGTTGTGAAAAAT 57.955 29.630 0.00 0.00 30.29 1.82
2678 3394 8.037758 TGGATTTCTAAAAGCAGTTGTGAAAAA 58.962 29.630 0.00 0.00 30.29 1.94
2679 3395 7.491048 GTGGATTTCTAAAAGCAGTTGTGAAAA 59.509 33.333 0.00 0.00 30.29 2.29
2680 3396 6.978080 GTGGATTTCTAAAAGCAGTTGTGAAA 59.022 34.615 0.00 0.00 0.00 2.69
2681 3397 6.096141 TGTGGATTTCTAAAAGCAGTTGTGAA 59.904 34.615 0.00 0.00 0.00 3.18
2682 3398 5.592282 TGTGGATTTCTAAAAGCAGTTGTGA 59.408 36.000 0.00 0.00 0.00 3.58
2683 3399 5.830912 TGTGGATTTCTAAAAGCAGTTGTG 58.169 37.500 0.00 0.00 0.00 3.33
2684 3400 5.507985 GCTGTGGATTTCTAAAAGCAGTTGT 60.508 40.000 0.00 0.00 0.00 3.32
2685 3401 4.919754 GCTGTGGATTTCTAAAAGCAGTTG 59.080 41.667 0.00 0.00 0.00 3.16
2686 3402 4.021981 GGCTGTGGATTTCTAAAAGCAGTT 60.022 41.667 0.00 0.00 0.00 3.16
2687 3403 3.507622 GGCTGTGGATTTCTAAAAGCAGT 59.492 43.478 0.00 0.00 0.00 4.40
2688 3404 3.426695 CGGCTGTGGATTTCTAAAAGCAG 60.427 47.826 0.00 0.00 0.00 4.24
2689 3405 2.487762 CGGCTGTGGATTTCTAAAAGCA 59.512 45.455 0.00 0.00 0.00 3.91
2690 3406 2.747446 TCGGCTGTGGATTTCTAAAAGC 59.253 45.455 0.00 0.00 0.00 3.51
2691 3407 4.379499 GGTTCGGCTGTGGATTTCTAAAAG 60.379 45.833 0.00 0.00 0.00 2.27
2692 3408 3.504520 GGTTCGGCTGTGGATTTCTAAAA 59.495 43.478 0.00 0.00 0.00 1.52
2693 3409 3.078837 GGTTCGGCTGTGGATTTCTAAA 58.921 45.455 0.00 0.00 0.00 1.85
2694 3410 2.039216 TGGTTCGGCTGTGGATTTCTAA 59.961 45.455 0.00 0.00 0.00 2.10
2695 3411 1.626321 TGGTTCGGCTGTGGATTTCTA 59.374 47.619 0.00 0.00 0.00 2.10
2696 3412 0.400213 TGGTTCGGCTGTGGATTTCT 59.600 50.000 0.00 0.00 0.00 2.52
2697 3413 1.243902 TTGGTTCGGCTGTGGATTTC 58.756 50.000 0.00 0.00 0.00 2.17
2698 3414 1.698506 TTTGGTTCGGCTGTGGATTT 58.301 45.000 0.00 0.00 0.00 2.17
2699 3415 1.923356 ATTTGGTTCGGCTGTGGATT 58.077 45.000 0.00 0.00 0.00 3.01
2700 3416 2.365582 GTATTTGGTTCGGCTGTGGAT 58.634 47.619 0.00 0.00 0.00 3.41
2701 3417 1.816074 GTATTTGGTTCGGCTGTGGA 58.184 50.000 0.00 0.00 0.00 4.02
2702 3418 0.446222 CGTATTTGGTTCGGCTGTGG 59.554 55.000 0.00 0.00 0.00 4.17
2703 3419 1.127951 GTCGTATTTGGTTCGGCTGTG 59.872 52.381 0.00 0.00 0.00 3.66
2704 3420 1.435577 GTCGTATTTGGTTCGGCTGT 58.564 50.000 0.00 0.00 0.00 4.40
2705 3421 0.725117 GGTCGTATTTGGTTCGGCTG 59.275 55.000 0.00 0.00 0.00 4.85
2706 3422 0.738412 CGGTCGTATTTGGTTCGGCT 60.738 55.000 0.00 0.00 0.00 5.52
2707 3423 1.015607 ACGGTCGTATTTGGTTCGGC 61.016 55.000 0.00 0.00 0.00 5.54
2708 3424 2.187707 CTACGGTCGTATTTGGTTCGG 58.812 52.381 3.61 0.00 0.00 4.30
2709 3425 2.867429 ACTACGGTCGTATTTGGTTCG 58.133 47.619 3.61 0.00 0.00 3.95
2710 3426 5.626955 GCTATACTACGGTCGTATTTGGTTC 59.373 44.000 10.14 0.00 0.00 3.62
2711 3427 5.523369 GCTATACTACGGTCGTATTTGGTT 58.477 41.667 10.14 0.00 0.00 3.67
2712 3428 4.319766 CGCTATACTACGGTCGTATTTGGT 60.320 45.833 10.14 1.76 0.00 3.67
2713 3429 4.153986 CGCTATACTACGGTCGTATTTGG 58.846 47.826 10.14 4.11 0.00 3.28
2714 3430 4.153986 CCGCTATACTACGGTCGTATTTG 58.846 47.826 10.14 6.07 44.46 2.32
2715 3431 4.410492 CCGCTATACTACGGTCGTATTT 57.590 45.455 10.14 0.00 44.46 1.40
2724 3440 1.135373 CCATCTGGCCGCTATACTACG 60.135 57.143 0.00 0.00 0.00 3.51
2725 3441 2.656560 CCATCTGGCCGCTATACTAC 57.343 55.000 0.00 0.00 0.00 2.73
2900 3805 6.785488 TGATGCAACTAAACAACTCTACAG 57.215 37.500 0.00 0.00 0.00 2.74
2906 3811 7.744087 TGTCTTATGATGCAACTAAACAACT 57.256 32.000 0.00 0.00 0.00 3.16
2932 3837 3.818210 TCAAATGAGCACCACACGTAATT 59.182 39.130 0.00 0.00 0.00 1.40
2936 3841 1.896220 ATCAAATGAGCACCACACGT 58.104 45.000 0.00 0.00 0.00 4.49
2938 3843 7.088589 ACTAATAATCAAATGAGCACCACAC 57.911 36.000 0.00 0.00 0.00 3.82
2939 3844 8.978874 ATACTAATAATCAAATGAGCACCACA 57.021 30.769 0.00 0.00 0.00 4.17
2940 3845 9.884465 GAATACTAATAATCAAATGAGCACCAC 57.116 33.333 0.00 0.00 0.00 4.16
2958 3917 3.705051 ACACGGTGGGAGAGAATACTAA 58.295 45.455 13.48 0.00 0.00 2.24
2972 3931 4.435518 CCAATTGAAATCGACTACACGGTG 60.436 45.833 7.12 6.58 0.00 4.94
2979 3941 8.792633 ACAATTCTTTCCAATTGAAATCGACTA 58.207 29.630 7.12 0.00 43.70 2.59
2998 3960 6.655078 ACATAGCAACCTGAAAACAATTCT 57.345 33.333 0.00 0.00 0.00 2.40
3016 3992 6.878923 TGAAGAACATACTTGGACCAACATAG 59.121 38.462 1.69 0.00 0.00 2.23
3100 4076 4.049186 GCCAGCAGCATTTATCAGATTTG 58.951 43.478 0.00 0.00 42.97 2.32
3146 4123 8.584157 ACAAATCATTGAAACAAGCTAATACCA 58.416 29.630 0.00 0.00 38.94 3.25
3240 4218 4.593206 AGAGTACTCAGGTGGTCAAATCAA 59.407 41.667 24.44 0.00 0.00 2.57
3275 4253 5.711698 TCCACCCAAAAGATTAGGAAAACT 58.288 37.500 0.00 0.00 0.00 2.66
3287 4265 4.869861 CAGAAAACAAACTCCACCCAAAAG 59.130 41.667 0.00 0.00 0.00 2.27
3348 4326 7.433537 TTTTTACATAACACTCCCCCAAAAA 57.566 32.000 0.00 0.00 0.00 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.