Multiple sequence alignment - TraesCS4A01G001500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G001500 chr4A 100.000 3326 0 0 1 3326 1155845 1152520 0.000000e+00 6143.0
1 TraesCS4A01G001500 chr4A 86.464 724 64 15 151 849 1137164 1136450 0.000000e+00 763.0
2 TraesCS4A01G001500 chr4D 89.376 1732 104 36 854 2542 763886 762192 0.000000e+00 2106.0
3 TraesCS4A01G001500 chr4D 91.667 624 43 4 2704 3326 145624378 145624993 0.000000e+00 856.0
4 TraesCS4A01G001500 chr4D 92.163 319 25 0 2009 2327 761495 761177 5.060000e-123 451.0
5 TraesCS4A01G001500 chr4D 95.946 148 6 0 2395 2542 761153 761006 1.190000e-59 241.0
6 TraesCS4A01G001500 chr4B 87.421 1741 110 48 855 2535 1055508 1057199 0.000000e+00 1901.0
7 TraesCS4A01G001500 chr4B 84.848 297 30 9 1802 2098 533497199 533496918 5.430000e-73 285.0
8 TraesCS4A01G001500 chr5D 93.087 622 36 2 2706 3326 326744924 326744309 0.000000e+00 904.0
9 TraesCS4A01G001500 chr5D 91.733 629 48 4 2698 3324 287810455 287811081 0.000000e+00 870.0
10 TraesCS4A01G001500 chr5D 91.653 623 45 4 2706 3324 14741250 14740631 0.000000e+00 856.0
11 TraesCS4A01G001500 chr5D 83.175 737 66 32 1403 2098 421316713 421315994 3.640000e-174 621.0
12 TraesCS4A01G001500 chr5D 88.806 134 13 2 198 329 393895829 393895696 2.660000e-36 163.0
13 TraesCS4A01G001500 chr5D 87.121 132 16 1 198 329 495547111 495547241 7.430000e-32 148.0
14 TraesCS4A01G001500 chrUn 92.516 628 41 3 2702 3326 108948170 108948794 0.000000e+00 894.0
15 TraesCS4A01G001500 chrUn 92.308 624 40 4 2704 3326 79925137 79925753 0.000000e+00 880.0
16 TraesCS4A01G001500 chrUn 81.547 737 75 35 1403 2098 386174541 386173825 4.850000e-153 551.0
17 TraesCS4A01G001500 chrUn 81.411 737 77 33 1403 2098 372309368 372308651 6.270000e-152 547.0
18 TraesCS4A01G001500 chrUn 81.275 737 78 33 1403 2098 384755780 384756497 2.920000e-150 542.0
19 TraesCS4A01G001500 chrUn 81.275 737 78 34 1403 2098 398391596 398390879 2.920000e-150 542.0
20 TraesCS4A01G001500 chr3D 92.147 624 45 3 2702 3324 526481142 526481762 0.000000e+00 878.0
21 TraesCS4A01G001500 chr3D 90.909 132 11 1 198 329 104025907 104026037 3.410000e-40 176.0
22 TraesCS4A01G001500 chr2A 91.961 622 40 5 2706 3326 760760051 760759439 0.000000e+00 863.0
23 TraesCS4A01G001500 chr2A 80.381 734 86 32 1405 2098 528413545 528412830 3.830000e-139 505.0
24 TraesCS4A01G001500 chr2A 85.315 143 20 1 189 330 764676857 764676715 2.670000e-31 147.0
25 TraesCS4A01G001500 chr2A 85.926 135 19 0 195 329 135473225 135473359 9.620000e-31 145.0
26 TraesCS4A01G001500 chr1D 91.318 622 50 2 2704 3324 479342241 479342859 0.000000e+00 846.0
27 TraesCS4A01G001500 chr7B 82.577 551 53 19 1436 1945 653886736 653887284 2.350000e-121 446.0
28 TraesCS4A01G001500 chr7B 87.023 131 17 0 199 329 715286931 715286801 7.430000e-32 148.0
29 TraesCS4A01G001500 chr1B 89.666 329 28 4 1005 1333 28157922 28158244 6.640000e-112 414.0
30 TraesCS4A01G001500 chr6B 88.406 138 16 0 195 332 296502 296365 2.050000e-37 167.0
31 TraesCS4A01G001500 chr6B 96.875 32 1 0 896 927 455898309 455898278 2.000000e-03 54.7
32 TraesCS4A01G001500 chr6A 72.743 587 123 25 943 1512 176409225 176409791 2.660000e-36 163.0
33 TraesCS4A01G001500 chr2D 88.235 136 16 0 192 327 382384239 382384104 2.660000e-36 163.0
34 TraesCS4A01G001500 chr3B 88.636 132 15 0 198 329 154663044 154663175 9.550000e-36 161.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G001500 chr4A 1152520 1155845 3325 True 6143.000000 6143 100.000 1 3326 1 chr4A.!!$R2 3325
1 TraesCS4A01G001500 chr4A 1136450 1137164 714 True 763.000000 763 86.464 151 849 1 chr4A.!!$R1 698
2 TraesCS4A01G001500 chr4D 761006 763886 2880 True 932.666667 2106 92.495 854 2542 3 chr4D.!!$R1 1688
3 TraesCS4A01G001500 chr4D 145624378 145624993 615 False 856.000000 856 91.667 2704 3326 1 chr4D.!!$F1 622
4 TraesCS4A01G001500 chr4B 1055508 1057199 1691 False 1901.000000 1901 87.421 855 2535 1 chr4B.!!$F1 1680
5 TraesCS4A01G001500 chr5D 326744309 326744924 615 True 904.000000 904 93.087 2706 3326 1 chr5D.!!$R2 620
6 TraesCS4A01G001500 chr5D 287810455 287811081 626 False 870.000000 870 91.733 2698 3324 1 chr5D.!!$F1 626
7 TraesCS4A01G001500 chr5D 14740631 14741250 619 True 856.000000 856 91.653 2706 3324 1 chr5D.!!$R1 618
8 TraesCS4A01G001500 chr5D 421315994 421316713 719 True 621.000000 621 83.175 1403 2098 1 chr5D.!!$R4 695
9 TraesCS4A01G001500 chrUn 108948170 108948794 624 False 894.000000 894 92.516 2702 3326 1 chrUn.!!$F2 624
10 TraesCS4A01G001500 chrUn 79925137 79925753 616 False 880.000000 880 92.308 2704 3326 1 chrUn.!!$F1 622
11 TraesCS4A01G001500 chrUn 386173825 386174541 716 True 551.000000 551 81.547 1403 2098 1 chrUn.!!$R2 695
12 TraesCS4A01G001500 chrUn 372308651 372309368 717 True 547.000000 547 81.411 1403 2098 1 chrUn.!!$R1 695
13 TraesCS4A01G001500 chrUn 384755780 384756497 717 False 542.000000 542 81.275 1403 2098 1 chrUn.!!$F3 695
14 TraesCS4A01G001500 chrUn 398390879 398391596 717 True 542.000000 542 81.275 1403 2098 1 chrUn.!!$R3 695
15 TraesCS4A01G001500 chr3D 526481142 526481762 620 False 878.000000 878 92.147 2702 3324 1 chr3D.!!$F2 622
16 TraesCS4A01G001500 chr2A 760759439 760760051 612 True 863.000000 863 91.961 2706 3326 1 chr2A.!!$R2 620
17 TraesCS4A01G001500 chr2A 528412830 528413545 715 True 505.000000 505 80.381 1405 2098 1 chr2A.!!$R1 693
18 TraesCS4A01G001500 chr1D 479342241 479342859 618 False 846.000000 846 91.318 2704 3324 1 chr1D.!!$F1 620
19 TraesCS4A01G001500 chr7B 653886736 653887284 548 False 446.000000 446 82.577 1436 1945 1 chr7B.!!$F1 509

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
100 101 0.10212 GATGTCAGGCTCAGAGGACG 59.898 60.0 0.00 0.0 33.04 4.79 F
904 929 0.10780 AGCAGAGCATAGTGGCAGTG 60.108 55.0 4.76 0.0 35.83 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1546 1597 0.396435 TGTGAAGGATCAGCACCGTT 59.604 50.0 8.69 0.00 35.88 4.44 R
2687 3985 0.108615 CTTAGGGTGTCACCGCTCTG 60.109 60.0 15.93 6.99 39.83 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.703058 AACAATCGAATATTCTTCCAGGTTT 57.297 32.000 13.45 0.00 0.00 3.27
25 26 7.088589 ACAATCGAATATTCTTCCAGGTTTG 57.911 36.000 13.45 9.82 0.00 2.93
26 27 6.659242 ACAATCGAATATTCTTCCAGGTTTGT 59.341 34.615 13.45 10.34 0.00 2.83
27 28 6.927294 ATCGAATATTCTTCCAGGTTTGTC 57.073 37.500 13.45 0.00 0.00 3.18
28 29 5.800296 TCGAATATTCTTCCAGGTTTGTCA 58.200 37.500 13.45 0.00 0.00 3.58
29 30 6.414732 TCGAATATTCTTCCAGGTTTGTCAT 58.585 36.000 13.45 0.00 0.00 3.06
30 31 6.316140 TCGAATATTCTTCCAGGTTTGTCATG 59.684 38.462 13.45 0.00 0.00 3.07
31 32 6.094048 CGAATATTCTTCCAGGTTTGTCATGT 59.906 38.462 13.45 0.00 0.00 3.21
32 33 6.764308 ATATTCTTCCAGGTTTGTCATGTG 57.236 37.500 0.00 0.00 0.00 3.21
33 34 2.229792 TCTTCCAGGTTTGTCATGTGC 58.770 47.619 0.00 0.00 0.00 4.57
34 35 2.158623 TCTTCCAGGTTTGTCATGTGCT 60.159 45.455 0.00 0.00 0.00 4.40
35 36 2.363306 TCCAGGTTTGTCATGTGCTT 57.637 45.000 0.00 0.00 0.00 3.91
36 37 2.665165 TCCAGGTTTGTCATGTGCTTT 58.335 42.857 0.00 0.00 0.00 3.51
37 38 2.361757 TCCAGGTTTGTCATGTGCTTTG 59.638 45.455 0.00 0.00 0.00 2.77
38 39 2.361757 CCAGGTTTGTCATGTGCTTTGA 59.638 45.455 0.00 0.00 0.00 2.69
39 40 3.181477 CCAGGTTTGTCATGTGCTTTGAA 60.181 43.478 0.00 0.00 0.00 2.69
40 41 3.798337 CAGGTTTGTCATGTGCTTTGAAC 59.202 43.478 0.00 0.00 0.00 3.18
41 42 3.123050 GGTTTGTCATGTGCTTTGAACC 58.877 45.455 0.00 0.00 0.00 3.62
42 43 3.430098 GGTTTGTCATGTGCTTTGAACCA 60.430 43.478 0.00 0.00 0.00 3.67
43 44 3.713858 TTGTCATGTGCTTTGAACCAG 57.286 42.857 0.00 0.00 0.00 4.00
44 45 2.653726 TGTCATGTGCTTTGAACCAGT 58.346 42.857 0.00 0.00 0.00 4.00
45 46 3.814625 TGTCATGTGCTTTGAACCAGTA 58.185 40.909 0.00 0.00 0.00 2.74
46 47 4.203226 TGTCATGTGCTTTGAACCAGTAA 58.797 39.130 0.00 0.00 0.00 2.24
47 48 4.642437 TGTCATGTGCTTTGAACCAGTAAA 59.358 37.500 0.00 0.00 0.00 2.01
48 49 5.126222 TGTCATGTGCTTTGAACCAGTAAAA 59.874 36.000 0.00 0.00 0.00 1.52
49 50 6.183360 TGTCATGTGCTTTGAACCAGTAAAAT 60.183 34.615 0.00 0.00 0.00 1.82
50 51 6.701400 GTCATGTGCTTTGAACCAGTAAAATT 59.299 34.615 0.00 0.00 0.00 1.82
51 52 7.224557 GTCATGTGCTTTGAACCAGTAAAATTT 59.775 33.333 0.00 0.00 0.00 1.82
52 53 8.417106 TCATGTGCTTTGAACCAGTAAAATTTA 58.583 29.630 0.00 0.00 0.00 1.40
53 54 9.039870 CATGTGCTTTGAACCAGTAAAATTTAA 57.960 29.630 0.00 0.00 0.00 1.52
54 55 9.777297 ATGTGCTTTGAACCAGTAAAATTTAAT 57.223 25.926 0.00 0.00 0.00 1.40
55 56 9.039870 TGTGCTTTGAACCAGTAAAATTTAATG 57.960 29.630 6.24 6.24 0.00 1.90
56 57 8.009409 GTGCTTTGAACCAGTAAAATTTAATGC 58.991 33.333 7.58 0.00 0.00 3.56
57 58 7.930865 TGCTTTGAACCAGTAAAATTTAATGCT 59.069 29.630 7.58 0.00 0.00 3.79
58 59 8.435430 GCTTTGAACCAGTAAAATTTAATGCTC 58.565 33.333 7.58 7.00 0.00 4.26
59 60 9.696917 CTTTGAACCAGTAAAATTTAATGCTCT 57.303 29.630 7.58 0.00 0.00 4.09
60 61 9.474920 TTTGAACCAGTAAAATTTAATGCTCTG 57.525 29.630 7.58 1.42 0.00 3.35
61 62 8.177119 TGAACCAGTAAAATTTAATGCTCTGT 57.823 30.769 7.58 0.00 0.00 3.41
62 63 8.637986 TGAACCAGTAAAATTTAATGCTCTGTT 58.362 29.630 7.58 6.49 0.00 3.16
63 64 9.476202 GAACCAGTAAAATTTAATGCTCTGTTT 57.524 29.630 7.58 0.00 0.00 2.83
64 65 9.476202 AACCAGTAAAATTTAATGCTCTGTTTC 57.524 29.630 7.58 0.00 0.00 2.78
65 66 8.637986 ACCAGTAAAATTTAATGCTCTGTTTCA 58.362 29.630 7.58 0.00 0.00 2.69
66 67 9.132521 CCAGTAAAATTTAATGCTCTGTTTCAG 57.867 33.333 7.58 0.00 0.00 3.02
67 68 9.132521 CAGTAAAATTTAATGCTCTGTTTCAGG 57.867 33.333 0.14 0.00 31.51 3.86
68 69 8.306761 AGTAAAATTTAATGCTCTGTTTCAGGG 58.693 33.333 0.00 0.00 34.60 4.45
69 70 6.916360 AAATTTAATGCTCTGTTTCAGGGA 57.084 33.333 0.44 0.00 32.95 4.20
70 71 6.521151 AATTTAATGCTCTGTTTCAGGGAG 57.479 37.500 0.44 0.00 32.95 4.30
71 72 4.640771 TTAATGCTCTGTTTCAGGGAGT 57.359 40.909 0.44 0.00 32.95 3.85
72 73 3.515602 AATGCTCTGTTTCAGGGAGTT 57.484 42.857 0.44 0.00 32.95 3.01
73 74 2.260844 TGCTCTGTTTCAGGGAGTTG 57.739 50.000 0.44 0.00 32.95 3.16
74 75 1.768275 TGCTCTGTTTCAGGGAGTTGA 59.232 47.619 0.44 0.00 32.95 3.18
75 76 2.373169 TGCTCTGTTTCAGGGAGTTGAT 59.627 45.455 0.44 0.00 32.95 2.57
76 77 3.006247 GCTCTGTTTCAGGGAGTTGATC 58.994 50.000 0.44 0.00 32.95 2.92
98 99 1.482954 CTGATGTCAGGCTCAGAGGA 58.517 55.000 0.00 0.00 41.13 3.71
99 100 1.136695 CTGATGTCAGGCTCAGAGGAC 59.863 57.143 0.00 0.00 41.13 3.85
100 101 0.102120 GATGTCAGGCTCAGAGGACG 59.898 60.000 0.00 0.00 33.04 4.79
101 102 0.613292 ATGTCAGGCTCAGAGGACGT 60.613 55.000 0.00 0.00 33.04 4.34
102 103 1.214062 GTCAGGCTCAGAGGACGTG 59.786 63.158 0.00 0.00 0.00 4.49
103 104 2.125753 CAGGCTCAGAGGACGTGC 60.126 66.667 0.00 0.00 0.00 5.34
104 105 3.753434 AGGCTCAGAGGACGTGCG 61.753 66.667 0.00 0.00 0.00 5.34
105 106 4.803426 GGCTCAGAGGACGTGCGG 62.803 72.222 0.00 0.00 0.00 5.69
106 107 3.749064 GCTCAGAGGACGTGCGGA 61.749 66.667 0.00 0.02 0.00 5.54
107 108 3.069980 GCTCAGAGGACGTGCGGAT 62.070 63.158 0.00 0.00 0.00 4.18
108 109 1.226802 CTCAGAGGACGTGCGGATG 60.227 63.158 0.00 2.07 0.00 3.51
109 110 2.887568 CAGAGGACGTGCGGATGC 60.888 66.667 0.00 0.00 43.20 3.91
119 120 4.284123 GCGGATGCACTCAGACAA 57.716 55.556 0.00 0.00 42.15 3.18
120 121 2.084844 GCGGATGCACTCAGACAAG 58.915 57.895 0.00 0.00 42.15 3.16
121 122 1.975363 GCGGATGCACTCAGACAAGC 61.975 60.000 0.00 0.00 42.15 4.01
122 123 0.671472 CGGATGCACTCAGACAAGCA 60.671 55.000 0.00 0.00 41.73 3.91
123 124 1.085091 GGATGCACTCAGACAAGCAG 58.915 55.000 0.00 0.00 40.71 4.24
124 125 1.085091 GATGCACTCAGACAAGCAGG 58.915 55.000 0.00 0.00 40.71 4.85
125 126 0.322277 ATGCACTCAGACAAGCAGGG 60.322 55.000 0.00 0.00 40.71 4.45
126 127 2.331132 GCACTCAGACAAGCAGGGC 61.331 63.158 0.00 0.00 0.00 5.19
127 128 2.031516 CACTCAGACAAGCAGGGCG 61.032 63.158 0.00 0.00 0.00 6.13
128 129 3.123620 CTCAGACAAGCAGGGCGC 61.124 66.667 0.00 0.00 42.91 6.53
129 130 3.889134 CTCAGACAAGCAGGGCGCA 62.889 63.158 10.83 0.00 46.13 6.09
130 131 3.730761 CAGACAAGCAGGGCGCAC 61.731 66.667 10.83 5.15 46.13 5.34
131 132 3.946201 AGACAAGCAGGGCGCACT 61.946 61.111 6.19 6.19 46.13 4.40
132 133 3.730761 GACAAGCAGGGCGCACTG 61.731 66.667 35.12 35.12 46.13 3.66
141 142 4.697756 GGCGCACTGGCACTGGTA 62.698 66.667 10.83 0.00 44.08 3.25
142 143 2.668212 GCGCACTGGCACTGGTAA 60.668 61.111 0.30 0.00 41.24 2.85
143 144 2.040544 GCGCACTGGCACTGGTAAT 61.041 57.895 0.30 0.00 41.24 1.89
144 145 0.742990 GCGCACTGGCACTGGTAATA 60.743 55.000 0.30 0.00 41.24 0.98
145 146 1.732941 CGCACTGGCACTGGTAATAA 58.267 50.000 0.00 0.00 41.24 1.40
146 147 1.396996 CGCACTGGCACTGGTAATAAC 59.603 52.381 0.00 0.00 41.24 1.89
147 148 2.432444 GCACTGGCACTGGTAATAACA 58.568 47.619 0.00 0.00 40.72 2.41
148 149 2.161609 GCACTGGCACTGGTAATAACAC 59.838 50.000 0.00 0.00 40.72 3.32
149 150 3.407698 CACTGGCACTGGTAATAACACA 58.592 45.455 0.00 0.00 0.00 3.72
150 151 3.188460 CACTGGCACTGGTAATAACACAC 59.812 47.826 0.00 0.00 0.00 3.82
151 152 3.072476 ACTGGCACTGGTAATAACACACT 59.928 43.478 0.00 0.00 0.00 3.55
152 153 3.407698 TGGCACTGGTAATAACACACTG 58.592 45.455 0.00 0.00 0.00 3.66
153 154 3.071747 TGGCACTGGTAATAACACACTGA 59.928 43.478 0.00 0.00 0.00 3.41
154 155 4.261801 GGCACTGGTAATAACACACTGAT 58.738 43.478 0.00 0.00 0.00 2.90
155 156 4.094887 GGCACTGGTAATAACACACTGATG 59.905 45.833 0.00 0.00 0.00 3.07
156 157 4.437390 GCACTGGTAATAACACACTGATGC 60.437 45.833 0.00 0.00 0.00 3.91
302 304 9.545105 AAGTGTAAATTCATTCATTTTGCTTCA 57.455 25.926 0.00 0.00 0.00 3.02
312 314 9.399797 TCATTCATTTTGCTTCATATGTAGTCT 57.600 29.630 10.61 0.00 0.00 3.24
466 468 9.915629 ACACTGTTTTACAACAAAATTAAGTGA 57.084 25.926 18.99 0.00 42.53 3.41
547 570 8.519492 GCATTTGTTTGCATCGGTATATTAAT 57.481 30.769 0.00 0.00 42.31 1.40
636 659 8.213679 ACCTTCACAGTGATGTATAAAGCATAT 58.786 33.333 3.45 0.00 0.00 1.78
696 721 5.940192 TTGTCTATGTTAGGTGCAAGTTG 57.060 39.130 0.00 0.00 0.00 3.16
711 736 5.652452 GTGCAAGTTGAGGAAATAGGGTAAT 59.348 40.000 7.16 0.00 0.00 1.89
718 743 9.059023 AGTTGAGGAAATAGGGTAATTTAGAGT 57.941 33.333 0.00 0.00 0.00 3.24
776 801 3.886505 GGTCTGGAGTCTATGAGGTGTAG 59.113 52.174 0.00 0.00 0.00 2.74
777 802 4.385421 GGTCTGGAGTCTATGAGGTGTAGA 60.385 50.000 0.00 0.00 0.00 2.59
779 804 6.466038 GGTCTGGAGTCTATGAGGTGTAGATA 60.466 46.154 0.00 0.00 31.41 1.98
780 805 6.999272 GTCTGGAGTCTATGAGGTGTAGATAA 59.001 42.308 0.00 0.00 31.41 1.75
781 806 7.174253 GTCTGGAGTCTATGAGGTGTAGATAAG 59.826 44.444 0.00 0.00 31.41 1.73
782 807 6.307776 TGGAGTCTATGAGGTGTAGATAAGG 58.692 44.000 0.00 0.00 31.41 2.69
787 812 8.478877 AGTCTATGAGGTGTAGATAAGGTTTTG 58.521 37.037 0.00 0.00 31.41 2.44
788 813 8.475639 GTCTATGAGGTGTAGATAAGGTTTTGA 58.524 37.037 0.00 0.00 31.41 2.69
805 830 6.976349 AGGTTTTGAAAATCTTTTGTACGACC 59.024 34.615 0.00 0.00 0.00 4.79
822 847 5.986004 ACGACCCATTTTATCTCGATTTC 57.014 39.130 0.00 0.00 0.00 2.17
837 862 5.239306 TCTCGATTTCCATGGTCAAATATGC 59.761 40.000 12.58 0.00 0.00 3.14
849 874 9.051679 CATGGTCAAATATGCATTTCATTTCAT 57.948 29.630 3.54 2.82 36.63 2.57
850 875 9.621629 ATGGTCAAATATGCATTTCATTTCATT 57.378 25.926 3.54 0.00 36.63 2.57
851 876 9.451002 TGGTCAAATATGCATTTCATTTCATTT 57.549 25.926 3.54 0.00 36.63 2.32
852 877 9.925268 GGTCAAATATGCATTTCATTTCATTTC 57.075 29.630 3.54 0.00 36.63 2.17
899 924 1.669779 GAGCAAAGCAGAGCATAGTGG 59.330 52.381 0.00 0.00 0.00 4.00
901 926 1.456296 CAAAGCAGAGCATAGTGGCA 58.544 50.000 0.00 0.00 35.83 4.92
902 927 1.400846 CAAAGCAGAGCATAGTGGCAG 59.599 52.381 0.00 0.00 35.83 4.85
903 928 0.617413 AAGCAGAGCATAGTGGCAGT 59.383 50.000 0.00 0.00 35.83 4.40
904 929 0.107800 AGCAGAGCATAGTGGCAGTG 60.108 55.000 4.76 0.00 35.83 3.66
905 930 1.094073 GCAGAGCATAGTGGCAGTGG 61.094 60.000 4.76 0.00 35.83 4.00
906 931 1.094073 CAGAGCATAGTGGCAGTGGC 61.094 60.000 10.30 10.30 40.13 5.01
907 932 1.078214 GAGCATAGTGGCAGTGGCA 60.078 57.895 16.56 16.56 43.71 4.92
908 933 1.077930 AGCATAGTGGCAGTGGCAG 60.078 57.895 21.25 9.50 43.71 4.85
909 934 1.377725 GCATAGTGGCAGTGGCAGT 60.378 57.895 27.85 27.85 43.99 4.40
910 935 1.651240 GCATAGTGGCAGTGGCAGTG 61.651 60.000 31.38 23.76 41.79 3.66
911 936 1.028330 CATAGTGGCAGTGGCAGTGG 61.028 60.000 31.38 21.07 41.79 4.00
912 937 1.492133 ATAGTGGCAGTGGCAGTGGT 61.492 55.000 31.38 19.37 41.79 4.16
930 955 2.379567 TGGTAGTGGTAGTGGTAGGTGA 59.620 50.000 0.00 0.00 0.00 4.02
931 956 3.181419 TGGTAGTGGTAGTGGTAGGTGAA 60.181 47.826 0.00 0.00 0.00 3.18
934 959 3.311091 AGTGGTAGTGGTAGGTGAACAA 58.689 45.455 0.00 0.00 0.00 2.83
936 961 4.349930 AGTGGTAGTGGTAGGTGAACAATT 59.650 41.667 0.00 0.00 0.00 2.32
937 962 5.067954 GTGGTAGTGGTAGGTGAACAATTT 58.932 41.667 0.00 0.00 0.00 1.82
938 963 6.043474 AGTGGTAGTGGTAGGTGAACAATTTA 59.957 38.462 0.00 0.00 0.00 1.40
939 964 6.370718 GTGGTAGTGGTAGGTGAACAATTTAG 59.629 42.308 0.00 0.00 0.00 1.85
964 1009 1.617850 GATCAGATCGAGCATCCACCT 59.382 52.381 2.38 0.00 30.71 4.00
979 1024 0.891904 CACCTAACCCAACCCAACCG 60.892 60.000 0.00 0.00 0.00 4.44
981 1026 0.322187 CCTAACCCAACCCAACCGAG 60.322 60.000 0.00 0.00 0.00 4.63
1120 1168 3.649277 CTCTTCACCGGCCCTGTCG 62.649 68.421 0.00 0.00 0.00 4.35
1146 1194 1.215647 CTTCTTCTACCGCCACGCT 59.784 57.895 0.00 0.00 0.00 5.07
1147 1195 1.078759 CTTCTTCTACCGCCACGCTG 61.079 60.000 0.00 0.00 0.00 5.18
1563 1614 0.684535 TCAACGGTGCTGATCCTTCA 59.315 50.000 0.00 0.00 0.00 3.02
1751 1826 0.877649 CAGATCGACGGCATCAAGGG 60.878 60.000 0.00 0.00 0.00 3.95
1866 1962 1.817099 CCACATGCTCTTCTCCGCC 60.817 63.158 0.00 0.00 0.00 6.13
1911 2007 2.494918 CTCCCGGCCGAGTACTTG 59.505 66.667 30.73 7.66 0.00 3.16
1961 2057 1.812922 CCGCCACAGATGAGCTCAC 60.813 63.158 20.97 13.11 0.00 3.51
2186 2297 2.672961 GACATGGTGTCCATCGAGAA 57.327 50.000 0.00 0.00 43.15 2.87
2196 2307 2.444140 ATCGAGAAGACCCCCGGG 60.444 66.667 15.80 15.80 42.03 5.73
2277 2388 2.189499 GCCGGACATCATGGAAGCC 61.189 63.158 5.05 0.00 0.00 4.35
2322 2433 1.716581 CTCAACGACAAGAAGAGCGTC 59.283 52.381 0.00 0.00 35.74 5.19
2327 2438 1.704070 GACAAGAAGAGCGTCTGACC 58.296 55.000 1.55 0.00 0.00 4.02
2329 2440 0.734253 CAAGAAGAGCGTCTGACCGG 60.734 60.000 0.00 0.00 0.00 5.28
2330 2441 2.493907 AAGAAGAGCGTCTGACCGGC 62.494 60.000 0.00 0.76 0.00 6.13
2331 2442 3.282745 GAAGAGCGTCTGACCGGCA 62.283 63.158 0.00 0.00 0.00 5.69
2332 2443 2.564553 GAAGAGCGTCTGACCGGCAT 62.565 60.000 0.00 0.00 0.00 4.40
2333 2444 2.564553 AAGAGCGTCTGACCGGCATC 62.565 60.000 0.00 0.00 0.00 3.91
2334 2445 4.498520 AGCGTCTGACCGGCATCG 62.499 66.667 0.00 9.83 0.00 3.84
2353 2464 3.063704 ATCGCCCGTGTGTCCGTA 61.064 61.111 0.00 0.00 0.00 4.02
2376 2489 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2404 3702 0.672342 AGCTGGCTTTTGCTCTTGTG 59.328 50.000 0.00 0.00 46.54 3.33
2408 3706 2.098614 TGGCTTTTGCTCTTGTGACAA 58.901 42.857 0.00 0.00 46.54 3.18
2411 3709 4.229876 GGCTTTTGCTCTTGTGACAATAC 58.770 43.478 0.00 0.00 46.54 1.89
2414 3712 5.506317 GCTTTTGCTCTTGTGACAATACTGT 60.506 40.000 0.00 0.00 43.35 3.55
2483 3781 8.663911 GTTGTTTTCAAATTCAAATTCACTGGA 58.336 29.630 0.00 0.00 41.76 3.86
2542 3840 1.235724 GCAAACGTAAGGCAGAGGTT 58.764 50.000 0.00 0.00 46.39 3.50
2543 3841 1.197036 GCAAACGTAAGGCAGAGGTTC 59.803 52.381 0.00 0.00 46.39 3.62
2544 3842 2.489971 CAAACGTAAGGCAGAGGTTCA 58.510 47.619 0.00 0.00 46.39 3.18
2545 3843 3.074412 CAAACGTAAGGCAGAGGTTCAT 58.926 45.455 0.00 0.00 46.39 2.57
2546 3844 3.418684 AACGTAAGGCAGAGGTTCATT 57.581 42.857 0.00 0.00 46.39 2.57
2547 3845 2.973945 ACGTAAGGCAGAGGTTCATTC 58.026 47.619 0.00 0.00 46.39 2.67
2548 3846 2.301870 ACGTAAGGCAGAGGTTCATTCA 59.698 45.455 0.00 0.00 46.39 2.57
2549 3847 3.055094 ACGTAAGGCAGAGGTTCATTCAT 60.055 43.478 0.00 0.00 46.39 2.57
2550 3848 3.557595 CGTAAGGCAGAGGTTCATTCATC 59.442 47.826 0.00 0.00 0.00 2.92
2551 3849 3.726557 AAGGCAGAGGTTCATTCATCA 57.273 42.857 0.00 0.00 0.00 3.07
2552 3850 3.947612 AGGCAGAGGTTCATTCATCAT 57.052 42.857 0.00 0.00 0.00 2.45
2553 3851 5.378230 AAGGCAGAGGTTCATTCATCATA 57.622 39.130 0.00 0.00 0.00 2.15
2554 3852 4.970711 AGGCAGAGGTTCATTCATCATAG 58.029 43.478 0.00 0.00 0.00 2.23
2555 3853 4.411540 AGGCAGAGGTTCATTCATCATAGT 59.588 41.667 0.00 0.00 0.00 2.12
2556 3854 4.754114 GGCAGAGGTTCATTCATCATAGTC 59.246 45.833 0.00 0.00 0.00 2.59
2557 3855 5.363101 GCAGAGGTTCATTCATCATAGTCA 58.637 41.667 0.00 0.00 0.00 3.41
2558 3856 5.819379 GCAGAGGTTCATTCATCATAGTCAA 59.181 40.000 0.00 0.00 0.00 3.18
2559 3857 6.238320 GCAGAGGTTCATTCATCATAGTCAAC 60.238 42.308 0.00 0.00 0.00 3.18
2560 3858 7.046652 CAGAGGTTCATTCATCATAGTCAACT 58.953 38.462 0.00 0.00 0.00 3.16
2561 3859 7.224362 CAGAGGTTCATTCATCATAGTCAACTC 59.776 40.741 0.00 0.00 0.00 3.01
2562 3860 6.950842 AGGTTCATTCATCATAGTCAACTCA 58.049 36.000 0.00 0.00 0.00 3.41
2563 3861 6.820656 AGGTTCATTCATCATAGTCAACTCAC 59.179 38.462 0.00 0.00 0.00 3.51
2564 3862 6.820656 GGTTCATTCATCATAGTCAACTCACT 59.179 38.462 0.00 0.00 0.00 3.41
2565 3863 7.981789 GGTTCATTCATCATAGTCAACTCACTA 59.018 37.037 0.00 0.00 33.32 2.74
2566 3864 9.371136 GTTCATTCATCATAGTCAACTCACTAA 57.629 33.333 0.00 0.00 32.52 2.24
2574 3872 9.614792 ATCATAGTCAACTCACTAATTAAACCC 57.385 33.333 0.00 0.00 32.52 4.11
2575 3873 8.598916 TCATAGTCAACTCACTAATTAAACCCA 58.401 33.333 0.00 0.00 32.52 4.51
2576 3874 9.396022 CATAGTCAACTCACTAATTAAACCCAT 57.604 33.333 0.00 0.00 32.52 4.00
2577 3875 9.975218 ATAGTCAACTCACTAATTAAACCCATT 57.025 29.630 0.00 0.00 32.52 3.16
2579 3877 9.802039 AGTCAACTCACTAATTAAACCCATTAA 57.198 29.630 0.00 0.00 37.86 1.40
2592 3890 9.942850 ATTAAACCCATTAAATGAGAAACAAGG 57.057 29.630 0.00 0.00 37.06 3.61
2593 3891 6.358974 AACCCATTAAATGAGAAACAAGGG 57.641 37.500 0.00 0.00 38.52 3.95
2594 3892 4.777366 ACCCATTAAATGAGAAACAAGGGG 59.223 41.667 0.00 1.05 36.89 4.79
2595 3893 4.383010 CCCATTAAATGAGAAACAAGGGGC 60.383 45.833 0.00 0.00 0.00 5.80
2596 3894 4.467438 CCATTAAATGAGAAACAAGGGGCT 59.533 41.667 0.00 0.00 0.00 5.19
2597 3895 5.394553 CCATTAAATGAGAAACAAGGGGCTC 60.395 44.000 0.00 0.00 0.00 4.70
2598 3896 2.978156 AATGAGAAACAAGGGGCTCA 57.022 45.000 0.00 0.00 41.14 4.26
2599 3897 2.206576 ATGAGAAACAAGGGGCTCAC 57.793 50.000 0.00 0.00 39.88 3.51
2600 3898 0.250295 TGAGAAACAAGGGGCTCACG 60.250 55.000 0.00 0.00 32.85 4.35
2601 3899 0.250338 GAGAAACAAGGGGCTCACGT 60.250 55.000 0.00 0.00 0.00 4.49
2602 3900 0.535102 AGAAACAAGGGGCTCACGTG 60.535 55.000 9.94 9.94 0.00 4.49
2603 3901 1.515521 GAAACAAGGGGCTCACGTGG 61.516 60.000 17.00 7.71 0.00 4.94
2604 3902 1.990160 AAACAAGGGGCTCACGTGGA 61.990 55.000 17.00 1.41 0.00 4.02
2605 3903 2.046892 CAAGGGGCTCACGTGGAG 60.047 66.667 17.00 12.66 46.93 3.86
2621 3919 4.320844 AGCTGTCCAGGTCACCTT 57.679 55.556 0.00 0.00 33.18 3.50
2622 3920 3.475932 AGCTGTCCAGGTCACCTTA 57.524 52.632 0.00 0.00 33.18 2.69
2623 3921 1.270907 AGCTGTCCAGGTCACCTTAG 58.729 55.000 0.00 0.00 33.18 2.18
2624 3922 0.250513 GCTGTCCAGGTCACCTTAGG 59.749 60.000 0.00 0.00 0.00 2.69
2625 3923 1.938585 CTGTCCAGGTCACCTTAGGA 58.061 55.000 4.77 0.00 0.00 2.94
2626 3924 2.257207 CTGTCCAGGTCACCTTAGGAA 58.743 52.381 4.77 0.00 29.23 3.36
2627 3925 1.975680 TGTCCAGGTCACCTTAGGAAC 59.024 52.381 4.77 2.47 29.23 3.62
2628 3926 1.975680 GTCCAGGTCACCTTAGGAACA 59.024 52.381 4.77 0.00 29.23 3.18
2629 3927 2.028020 GTCCAGGTCACCTTAGGAACAG 60.028 54.545 4.77 0.00 29.23 3.16
2630 3928 1.978580 CCAGGTCACCTTAGGAACAGT 59.021 52.381 4.77 0.00 0.00 3.55
2631 3929 2.289694 CCAGGTCACCTTAGGAACAGTG 60.290 54.545 4.77 4.56 0.00 3.66
2632 3930 1.978580 AGGTCACCTTAGGAACAGTGG 59.021 52.381 4.77 0.00 0.00 4.00
2633 3931 1.610886 GGTCACCTTAGGAACAGTGGC 60.611 57.143 4.77 0.00 34.11 5.01
2634 3932 1.348036 GTCACCTTAGGAACAGTGGCT 59.652 52.381 4.77 0.00 32.18 4.75
2635 3933 1.623811 TCACCTTAGGAACAGTGGCTC 59.376 52.381 4.77 0.00 0.00 4.70
2636 3934 0.984995 ACCTTAGGAACAGTGGCTCC 59.015 55.000 4.77 5.57 0.00 4.70
2637 3935 1.280457 CCTTAGGAACAGTGGCTCCT 58.720 55.000 17.45 17.45 44.49 3.69
2638 3936 1.065854 CCTTAGGAACAGTGGCTCCTG 60.066 57.143 20.84 9.14 42.25 3.86
2639 3937 1.902508 CTTAGGAACAGTGGCTCCTGA 59.097 52.381 20.84 14.24 42.25 3.86
2640 3938 2.254152 TAGGAACAGTGGCTCCTGAT 57.746 50.000 20.84 3.55 42.25 2.90
2641 3939 0.908198 AGGAACAGTGGCTCCTGATC 59.092 55.000 13.72 8.57 40.70 2.92
2642 3940 0.615331 GGAACAGTGGCTCCTGATCA 59.385 55.000 10.95 0.00 36.33 2.92
2643 3941 1.003580 GGAACAGTGGCTCCTGATCAA 59.996 52.381 10.95 0.00 36.33 2.57
2644 3942 2.354259 GAACAGTGGCTCCTGATCAAG 58.646 52.381 10.95 0.00 35.14 3.02
2645 3943 1.356124 ACAGTGGCTCCTGATCAAGT 58.644 50.000 10.95 0.00 36.30 3.16
2646 3944 1.701847 ACAGTGGCTCCTGATCAAGTT 59.298 47.619 10.95 0.00 36.30 2.66
2647 3945 2.107204 ACAGTGGCTCCTGATCAAGTTT 59.893 45.455 10.95 0.00 36.30 2.66
2648 3946 2.486982 CAGTGGCTCCTGATCAAGTTTG 59.513 50.000 0.00 0.00 34.23 2.93
2649 3947 1.200948 GTGGCTCCTGATCAAGTTTGC 59.799 52.381 0.00 0.00 0.00 3.68
2650 3948 0.449388 GGCTCCTGATCAAGTTTGCG 59.551 55.000 0.00 0.00 0.00 4.85
2651 3949 1.442769 GCTCCTGATCAAGTTTGCGA 58.557 50.000 0.00 0.00 0.00 5.10
2652 3950 2.012673 GCTCCTGATCAAGTTTGCGAT 58.987 47.619 0.00 0.00 0.00 4.58
2653 3951 2.421424 GCTCCTGATCAAGTTTGCGATT 59.579 45.455 0.00 0.00 0.00 3.34
2654 3952 3.730061 GCTCCTGATCAAGTTTGCGATTG 60.730 47.826 0.00 0.00 0.00 2.67
2655 3953 2.749076 TCCTGATCAAGTTTGCGATTGG 59.251 45.455 0.00 0.00 0.00 3.16
2656 3954 2.159338 CCTGATCAAGTTTGCGATTGGG 60.159 50.000 0.00 0.00 0.00 4.12
2657 3955 2.489329 CTGATCAAGTTTGCGATTGGGT 59.511 45.455 0.00 0.00 0.00 4.51
2658 3956 2.487762 TGATCAAGTTTGCGATTGGGTC 59.512 45.455 0.00 0.00 0.00 4.46
2667 3965 3.267900 CGATTGGGTCGCGTATCTT 57.732 52.632 5.77 0.00 44.33 2.40
2668 3966 0.852777 CGATTGGGTCGCGTATCTTG 59.147 55.000 5.77 0.00 44.33 3.02
2669 3967 1.801395 CGATTGGGTCGCGTATCTTGT 60.801 52.381 5.77 0.00 44.33 3.16
2670 3968 1.859080 GATTGGGTCGCGTATCTTGTC 59.141 52.381 5.77 0.00 0.00 3.18
2671 3969 0.892755 TTGGGTCGCGTATCTTGTCT 59.107 50.000 5.77 0.00 0.00 3.41
2672 3970 1.753930 TGGGTCGCGTATCTTGTCTA 58.246 50.000 5.77 0.00 0.00 2.59
2673 3971 1.674441 TGGGTCGCGTATCTTGTCTAG 59.326 52.381 5.77 0.00 0.00 2.43
2674 3972 1.001597 GGGTCGCGTATCTTGTCTAGG 60.002 57.143 5.77 0.00 0.00 3.02
2675 3973 1.945394 GGTCGCGTATCTTGTCTAGGA 59.055 52.381 5.77 0.00 0.00 2.94
2676 3974 2.357009 GGTCGCGTATCTTGTCTAGGAA 59.643 50.000 5.77 0.00 0.00 3.36
2677 3975 3.181493 GGTCGCGTATCTTGTCTAGGAAA 60.181 47.826 5.77 0.00 0.00 3.13
2678 3976 4.418392 GTCGCGTATCTTGTCTAGGAAAA 58.582 43.478 5.77 0.00 0.00 2.29
2679 3977 4.860907 GTCGCGTATCTTGTCTAGGAAAAA 59.139 41.667 5.77 0.00 0.00 1.94
2696 3994 2.138596 AAAAATGCAACAGAGCGGTG 57.861 45.000 0.00 0.00 37.31 4.94
2712 4010 1.066143 CGGTGACACCCTAAGAGCATT 60.066 52.381 19.11 0.00 33.75 3.56
2748 4046 6.440436 GTCCAAAATTTAGCGGTCTAAAACA 58.560 36.000 0.00 0.00 44.99 2.83
2818 4117 6.455360 AAAAAGCTCAACTTCAACAGATGA 57.545 33.333 0.00 0.00 37.75 2.92
2833 4133 6.438108 TCAACAGATGATCCAAATTGATGGTT 59.562 34.615 0.00 0.00 36.02 3.67
2853 4153 5.596361 TGGTTCAAAAGAGCAACTCCAATAA 59.404 36.000 0.00 0.00 0.00 1.40
2857 4157 7.523293 TCAAAAGAGCAACTCCAATAAATGA 57.477 32.000 0.00 0.00 0.00 2.57
3005 4305 1.532007 CTACTACTCATCGTCGGAGCC 59.468 57.143 0.00 0.00 35.79 4.70
3153 4461 1.316706 CCTCGTCCTCCTTCTTCGCT 61.317 60.000 0.00 0.00 0.00 4.93
3204 4512 0.256464 AGTAGTACTCCAGCTCGGCT 59.744 55.000 0.00 0.00 40.77 5.52
3205 4513 0.664224 GTAGTACTCCAGCTCGGCTC 59.336 60.000 0.00 0.00 36.40 4.70
3215 4523 3.048941 GCTCGGCTCGGACGTACTT 62.049 63.158 0.00 0.00 34.61 2.24
3254 4562 0.811915 CTCGACATCACCTCCTCGTT 59.188 55.000 0.00 0.00 0.00 3.85
3280 4588 4.657824 CGGCACCGACGACAACCT 62.658 66.667 2.01 0.00 42.83 3.50
3298 4606 0.167470 CTACGGCTTCTTCGTCGTCA 59.833 55.000 0.00 0.00 41.38 4.35
3307 4615 4.476862 CTTCTTCGTCGTCATCTTCTTCA 58.523 43.478 0.00 0.00 0.00 3.02
3309 4617 5.813080 TCTTCGTCGTCATCTTCTTCATA 57.187 39.130 0.00 0.00 0.00 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.176690 ACAAACCTGGAAGAATATTCGATTGTT 59.823 33.333 9.78 7.36 34.07 2.83
1 2 6.659242 ACAAACCTGGAAGAATATTCGATTGT 59.341 34.615 9.78 8.64 34.07 2.71
2 3 7.088589 ACAAACCTGGAAGAATATTCGATTG 57.911 36.000 9.78 8.10 34.07 2.67
3 4 6.884295 TGACAAACCTGGAAGAATATTCGATT 59.116 34.615 9.78 0.00 34.07 3.34
4 5 6.414732 TGACAAACCTGGAAGAATATTCGAT 58.585 36.000 9.78 3.32 34.07 3.59
6 7 6.094048 ACATGACAAACCTGGAAGAATATTCG 59.906 38.462 9.78 0.00 34.07 3.34
7 8 7.253422 CACATGACAAACCTGGAAGAATATTC 58.747 38.462 7.41 7.41 34.07 1.75
8 9 6.350445 GCACATGACAAACCTGGAAGAATATT 60.350 38.462 0.00 0.00 34.07 1.28
9 10 5.126061 GCACATGACAAACCTGGAAGAATAT 59.874 40.000 0.00 0.00 34.07 1.28
10 11 4.458989 GCACATGACAAACCTGGAAGAATA 59.541 41.667 0.00 0.00 34.07 1.75
11 12 3.256631 GCACATGACAAACCTGGAAGAAT 59.743 43.478 0.00 0.00 34.07 2.40
12 13 2.622942 GCACATGACAAACCTGGAAGAA 59.377 45.455 0.00 0.00 34.07 2.52
13 14 2.158623 AGCACATGACAAACCTGGAAGA 60.159 45.455 0.00 0.00 34.07 2.87
14 15 2.233271 AGCACATGACAAACCTGGAAG 58.767 47.619 0.00 0.00 0.00 3.46
15 16 2.363306 AGCACATGACAAACCTGGAA 57.637 45.000 0.00 0.00 0.00 3.53
16 17 2.361757 CAAAGCACATGACAAACCTGGA 59.638 45.455 0.00 0.00 0.00 3.86
17 18 2.361757 TCAAAGCACATGACAAACCTGG 59.638 45.455 0.00 0.00 0.00 4.45
18 19 3.713858 TCAAAGCACATGACAAACCTG 57.286 42.857 0.00 0.00 0.00 4.00
19 20 3.181476 GGTTCAAAGCACATGACAAACCT 60.181 43.478 0.00 0.00 0.00 3.50
20 21 3.123050 GGTTCAAAGCACATGACAAACC 58.877 45.455 0.00 0.00 0.00 3.27
21 22 3.779759 TGGTTCAAAGCACATGACAAAC 58.220 40.909 0.00 0.00 0.00 2.93
22 23 3.446873 ACTGGTTCAAAGCACATGACAAA 59.553 39.130 0.00 0.00 32.29 2.83
23 24 3.023119 ACTGGTTCAAAGCACATGACAA 58.977 40.909 0.00 0.00 32.29 3.18
24 25 2.653726 ACTGGTTCAAAGCACATGACA 58.346 42.857 0.00 0.00 32.29 3.58
25 26 4.829064 TTACTGGTTCAAAGCACATGAC 57.171 40.909 0.00 0.00 32.29 3.06
26 27 5.843673 TTTTACTGGTTCAAAGCACATGA 57.156 34.783 0.00 0.00 32.29 3.07
27 28 7.481275 AAATTTTACTGGTTCAAAGCACATG 57.519 32.000 0.00 0.00 32.29 3.21
28 29 9.777297 ATTAAATTTTACTGGTTCAAAGCACAT 57.223 25.926 0.00 0.00 32.29 3.21
29 30 9.039870 CATTAAATTTTACTGGTTCAAAGCACA 57.960 29.630 0.00 0.00 32.29 4.57
30 31 8.009409 GCATTAAATTTTACTGGTTCAAAGCAC 58.991 33.333 0.00 0.00 32.29 4.40
31 32 7.930865 AGCATTAAATTTTACTGGTTCAAAGCA 59.069 29.630 0.00 0.00 34.85 3.91
32 33 8.310406 AGCATTAAATTTTACTGGTTCAAAGC 57.690 30.769 0.00 0.00 0.00 3.51
33 34 9.696917 AGAGCATTAAATTTTACTGGTTCAAAG 57.303 29.630 11.11 0.00 0.00 2.77
34 35 9.474920 CAGAGCATTAAATTTTACTGGTTCAAA 57.525 29.630 11.11 0.00 0.00 2.69
35 36 8.637986 ACAGAGCATTAAATTTTACTGGTTCAA 58.362 29.630 11.11 0.00 0.00 2.69
36 37 8.177119 ACAGAGCATTAAATTTTACTGGTTCA 57.823 30.769 11.11 0.00 0.00 3.18
37 38 9.476202 AAACAGAGCATTAAATTTTACTGGTTC 57.524 29.630 11.11 6.44 29.91 3.62
38 39 9.476202 GAAACAGAGCATTAAATTTTACTGGTT 57.524 29.630 11.11 8.84 36.88 3.67
39 40 8.637986 TGAAACAGAGCATTAAATTTTACTGGT 58.362 29.630 9.99 9.99 0.00 4.00
40 41 9.132521 CTGAAACAGAGCATTAAATTTTACTGG 57.867 33.333 0.00 0.00 32.44 4.00
41 42 9.132521 CCTGAAACAGAGCATTAAATTTTACTG 57.867 33.333 0.00 2.94 32.44 2.74
42 43 8.306761 CCCTGAAACAGAGCATTAAATTTTACT 58.693 33.333 0.00 0.00 32.44 2.24
43 44 8.303876 TCCCTGAAACAGAGCATTAAATTTTAC 58.696 33.333 0.00 0.00 32.44 2.01
44 45 8.415950 TCCCTGAAACAGAGCATTAAATTTTA 57.584 30.769 0.00 0.00 32.44 1.52
45 46 7.015584 ACTCCCTGAAACAGAGCATTAAATTTT 59.984 33.333 0.00 0.00 32.44 1.82
46 47 6.494835 ACTCCCTGAAACAGAGCATTAAATTT 59.505 34.615 0.00 0.00 32.44 1.82
47 48 6.012745 ACTCCCTGAAACAGAGCATTAAATT 58.987 36.000 0.00 0.00 32.44 1.82
48 49 5.574188 ACTCCCTGAAACAGAGCATTAAAT 58.426 37.500 0.00 0.00 32.44 1.40
49 50 4.985538 ACTCCCTGAAACAGAGCATTAAA 58.014 39.130 0.00 0.00 32.44 1.52
50 51 4.640771 ACTCCCTGAAACAGAGCATTAA 57.359 40.909 0.00 0.00 32.44 1.40
51 52 4.041567 TCAACTCCCTGAAACAGAGCATTA 59.958 41.667 0.00 0.00 32.44 1.90
52 53 3.152341 CAACTCCCTGAAACAGAGCATT 58.848 45.455 0.00 0.00 32.44 3.56
53 54 2.373169 TCAACTCCCTGAAACAGAGCAT 59.627 45.455 0.00 0.00 32.44 3.79
54 55 1.768275 TCAACTCCCTGAAACAGAGCA 59.232 47.619 0.00 0.00 32.44 4.26
55 56 2.550830 TCAACTCCCTGAAACAGAGC 57.449 50.000 0.00 0.00 32.44 4.09
56 57 3.008375 TGGATCAACTCCCTGAAACAGAG 59.992 47.826 0.00 0.00 44.23 3.35
57 58 2.978978 TGGATCAACTCCCTGAAACAGA 59.021 45.455 0.00 0.00 44.23 3.41
58 59 3.077359 GTGGATCAACTCCCTGAAACAG 58.923 50.000 0.00 0.00 44.23 3.16
59 60 2.711009 AGTGGATCAACTCCCTGAAACA 59.289 45.455 0.00 0.00 44.23 2.83
60 61 3.077359 CAGTGGATCAACTCCCTGAAAC 58.923 50.000 0.00 0.00 44.23 2.78
61 62 2.978978 TCAGTGGATCAACTCCCTGAAA 59.021 45.455 0.00 0.00 43.03 2.69
62 63 2.619931 TCAGTGGATCAACTCCCTGAA 58.380 47.619 0.00 0.00 43.03 3.02
63 64 2.325661 TCAGTGGATCAACTCCCTGA 57.674 50.000 0.00 0.00 44.23 3.86
64 65 2.238144 ACATCAGTGGATCAACTCCCTG 59.762 50.000 0.00 0.97 44.23 4.45
65 66 2.503356 GACATCAGTGGATCAACTCCCT 59.497 50.000 0.00 0.00 44.23 4.20
66 67 2.237143 TGACATCAGTGGATCAACTCCC 59.763 50.000 0.00 0.00 44.23 4.30
67 68 3.529533 CTGACATCAGTGGATCAACTCC 58.470 50.000 0.00 0.00 38.62 3.85
68 69 3.529533 CCTGACATCAGTGGATCAACTC 58.470 50.000 0.00 0.00 42.27 3.01
69 70 2.355513 GCCTGACATCAGTGGATCAACT 60.356 50.000 8.06 0.00 42.27 3.16
70 71 2.012673 GCCTGACATCAGTGGATCAAC 58.987 52.381 8.06 0.00 42.27 3.18
71 72 1.911357 AGCCTGACATCAGTGGATCAA 59.089 47.619 8.06 0.00 42.27 2.57
72 73 1.483827 GAGCCTGACATCAGTGGATCA 59.516 52.381 8.06 0.00 42.27 2.92
73 74 1.483827 TGAGCCTGACATCAGTGGATC 59.516 52.381 8.06 3.68 42.27 3.36
74 75 1.485480 CTGAGCCTGACATCAGTGGAT 59.515 52.381 8.06 0.00 42.27 3.41
75 76 0.900421 CTGAGCCTGACATCAGTGGA 59.100 55.000 8.06 0.00 42.27 4.02
76 77 0.900421 TCTGAGCCTGACATCAGTGG 59.100 55.000 8.06 0.00 42.86 4.00
77 78 1.134759 CCTCTGAGCCTGACATCAGTG 60.135 57.143 8.06 3.01 42.86 3.66
78 79 1.193323 CCTCTGAGCCTGACATCAGT 58.807 55.000 8.06 0.00 42.86 3.41
79 80 1.136695 GTCCTCTGAGCCTGACATCAG 59.863 57.143 1.63 1.63 43.53 2.90
80 81 1.189752 GTCCTCTGAGCCTGACATCA 58.810 55.000 0.00 0.00 0.00 3.07
81 82 0.102120 CGTCCTCTGAGCCTGACATC 59.898 60.000 11.39 0.00 0.00 3.06
82 83 0.613292 ACGTCCTCTGAGCCTGACAT 60.613 55.000 11.39 0.00 0.00 3.06
83 84 1.228583 ACGTCCTCTGAGCCTGACA 60.229 57.895 11.39 0.00 0.00 3.58
84 85 1.214062 CACGTCCTCTGAGCCTGAC 59.786 63.158 0.00 1.02 0.00 3.51
85 86 2.640302 GCACGTCCTCTGAGCCTGA 61.640 63.158 0.00 0.00 0.00 3.86
86 87 2.125753 GCACGTCCTCTGAGCCTG 60.126 66.667 0.00 0.00 0.00 4.85
87 88 3.753434 CGCACGTCCTCTGAGCCT 61.753 66.667 0.00 0.00 0.00 4.58
88 89 4.803426 CCGCACGTCCTCTGAGCC 62.803 72.222 0.00 0.00 0.00 4.70
89 90 3.069980 ATCCGCACGTCCTCTGAGC 62.070 63.158 0.00 0.00 0.00 4.26
90 91 1.226802 CATCCGCACGTCCTCTGAG 60.227 63.158 0.00 0.00 0.00 3.35
91 92 2.885113 CATCCGCACGTCCTCTGA 59.115 61.111 0.00 0.00 0.00 3.27
92 93 2.887568 GCATCCGCACGTCCTCTG 60.888 66.667 0.00 0.00 38.36 3.35
93 94 3.381983 TGCATCCGCACGTCCTCT 61.382 61.111 0.00 0.00 45.36 3.69
102 103 1.975363 GCTTGTCTGAGTGCATCCGC 61.975 60.000 0.00 0.00 39.24 5.54
103 104 0.671472 TGCTTGTCTGAGTGCATCCG 60.671 55.000 0.00 0.00 0.00 4.18
104 105 1.085091 CTGCTTGTCTGAGTGCATCC 58.915 55.000 0.00 0.00 34.79 3.51
105 106 1.085091 CCTGCTTGTCTGAGTGCATC 58.915 55.000 0.00 0.00 34.79 3.91
106 107 0.322277 CCCTGCTTGTCTGAGTGCAT 60.322 55.000 0.00 0.00 34.79 3.96
107 108 1.071987 CCCTGCTTGTCTGAGTGCA 59.928 57.895 0.00 0.00 0.00 4.57
108 109 2.331132 GCCCTGCTTGTCTGAGTGC 61.331 63.158 0.00 0.00 0.00 4.40
109 110 2.031516 CGCCCTGCTTGTCTGAGTG 61.032 63.158 0.00 0.00 0.00 3.51
110 111 2.345244 CGCCCTGCTTGTCTGAGT 59.655 61.111 0.00 0.00 0.00 3.41
111 112 3.123620 GCGCCCTGCTTGTCTGAG 61.124 66.667 0.00 0.00 41.73 3.35
112 113 3.939939 TGCGCCCTGCTTGTCTGA 61.940 61.111 4.18 0.00 46.63 3.27
113 114 3.730761 GTGCGCCCTGCTTGTCTG 61.731 66.667 4.18 0.00 46.63 3.51
114 115 3.946201 AGTGCGCCCTGCTTGTCT 61.946 61.111 4.18 0.00 46.63 3.41
115 116 3.730761 CAGTGCGCCCTGCTTGTC 61.731 66.667 7.02 0.00 46.63 3.18
126 127 1.396996 GTTATTACCAGTGCCAGTGCG 59.603 52.381 0.00 0.00 41.78 5.34
127 128 2.161609 GTGTTATTACCAGTGCCAGTGC 59.838 50.000 0.00 0.00 38.26 4.40
128 129 3.188460 GTGTGTTATTACCAGTGCCAGTG 59.812 47.826 0.00 0.00 0.00 3.66
129 130 3.072476 AGTGTGTTATTACCAGTGCCAGT 59.928 43.478 0.00 0.00 0.00 4.00
130 131 3.436704 CAGTGTGTTATTACCAGTGCCAG 59.563 47.826 0.00 0.00 0.00 4.85
131 132 3.071747 TCAGTGTGTTATTACCAGTGCCA 59.928 43.478 0.00 0.00 31.45 4.92
132 133 3.670625 TCAGTGTGTTATTACCAGTGCC 58.329 45.455 0.00 0.00 31.45 5.01
133 134 4.437390 GCATCAGTGTGTTATTACCAGTGC 60.437 45.833 0.00 0.00 31.45 4.40
134 135 4.937620 AGCATCAGTGTGTTATTACCAGTG 59.062 41.667 0.00 0.00 32.07 3.66
135 136 5.165961 AGCATCAGTGTGTTATTACCAGT 57.834 39.130 0.00 0.00 0.00 4.00
136 137 5.412594 ACAAGCATCAGTGTGTTATTACCAG 59.587 40.000 0.00 0.00 0.00 4.00
137 138 5.312895 ACAAGCATCAGTGTGTTATTACCA 58.687 37.500 0.00 0.00 0.00 3.25
138 139 5.880054 ACAAGCATCAGTGTGTTATTACC 57.120 39.130 0.00 0.00 0.00 2.85
139 140 9.840427 AAAATACAAGCATCAGTGTGTTATTAC 57.160 29.630 0.00 0.00 30.06 1.89
234 236 9.948964 TTCATCCATATGTAGTCCATATTCAAG 57.051 33.333 1.24 0.00 42.87 3.02
276 278 9.545105 TGAAGCAAAATGAATGAATTTACACTT 57.455 25.926 0.00 0.00 0.00 3.16
277 279 9.715121 ATGAAGCAAAATGAATGAATTTACACT 57.285 25.926 0.00 0.00 0.00 3.55
380 382 7.834068 ATTGTGTTAGTGCTATGTAGTCAAG 57.166 36.000 0.00 0.00 0.00 3.02
440 442 9.915629 TCACTTAATTTTGTTGTAAAACAGTGT 57.084 25.926 10.26 0.00 32.47 3.55
611 634 6.932356 ATGCTTTATACATCACTGTGAAGG 57.068 37.500 15.31 12.33 36.79 3.46
646 669 9.173021 CATACCCTAAAAACACTCATCAACATA 57.827 33.333 0.00 0.00 0.00 2.29
649 672 7.681939 TCATACCCTAAAAACACTCATCAAC 57.318 36.000 0.00 0.00 0.00 3.18
651 674 7.888021 ACAATCATACCCTAAAAACACTCATCA 59.112 33.333 0.00 0.00 0.00 3.07
652 675 8.281212 ACAATCATACCCTAAAAACACTCATC 57.719 34.615 0.00 0.00 0.00 2.92
653 676 8.109634 AGACAATCATACCCTAAAAACACTCAT 58.890 33.333 0.00 0.00 0.00 2.90
654 677 7.458397 AGACAATCATACCCTAAAAACACTCA 58.542 34.615 0.00 0.00 0.00 3.41
737 762 8.312564 ACTCCAGACCATTCTACTTAGTTAAAC 58.687 37.037 0.00 0.00 0.00 2.01
757 782 6.432783 CCTTATCTACACCTCATAGACTCCAG 59.567 46.154 0.00 0.00 31.54 3.86
779 804 7.490079 GGTCGTACAAAAGATTTTCAAAACCTT 59.510 33.333 0.00 0.00 0.00 3.50
780 805 6.976349 GGTCGTACAAAAGATTTTCAAAACCT 59.024 34.615 0.00 0.00 0.00 3.50
781 806 6.199531 GGGTCGTACAAAAGATTTTCAAAACC 59.800 38.462 0.00 0.00 0.00 3.27
782 807 6.752815 TGGGTCGTACAAAAGATTTTCAAAAC 59.247 34.615 0.00 0.00 0.00 2.43
787 812 7.940178 AAAATGGGTCGTACAAAAGATTTTC 57.060 32.000 0.00 0.00 0.00 2.29
788 813 9.634163 GATAAAATGGGTCGTACAAAAGATTTT 57.366 29.630 0.00 0.00 0.00 1.82
802 827 6.294176 CCATGGAAATCGAGATAAAATGGGTC 60.294 42.308 5.56 0.00 0.00 4.46
805 830 6.262944 TGACCATGGAAATCGAGATAAAATGG 59.737 38.462 21.47 11.94 38.38 3.16
822 847 7.496263 TGAAATGAAATGCATATTTGACCATGG 59.504 33.333 11.19 11.19 36.66 3.66
863 888 5.417266 GCTTTGCTCTCTTCCCTAAAAAGAT 59.583 40.000 0.00 0.00 32.56 2.40
865 890 4.520492 TGCTTTGCTCTCTTCCCTAAAAAG 59.480 41.667 0.00 0.00 0.00 2.27
899 924 1.672356 CCACTACCACTGCCACTGC 60.672 63.158 0.00 0.00 38.26 4.40
901 926 1.267121 CTACCACTACCACTGCCACT 58.733 55.000 0.00 0.00 0.00 4.00
902 927 0.974383 ACTACCACTACCACTGCCAC 59.026 55.000 0.00 0.00 0.00 5.01
903 928 0.973632 CACTACCACTACCACTGCCA 59.026 55.000 0.00 0.00 0.00 4.92
904 929 0.249398 CCACTACCACTACCACTGCC 59.751 60.000 0.00 0.00 0.00 4.85
905 930 0.974383 ACCACTACCACTACCACTGC 59.026 55.000 0.00 0.00 0.00 4.40
906 931 2.758979 CCTACCACTACCACTACCACTG 59.241 54.545 0.00 0.00 0.00 3.66
907 932 2.381275 ACCTACCACTACCACTACCACT 59.619 50.000 0.00 0.00 0.00 4.00
908 933 2.494870 CACCTACCACTACCACTACCAC 59.505 54.545 0.00 0.00 0.00 4.16
909 934 2.379567 TCACCTACCACTACCACTACCA 59.620 50.000 0.00 0.00 0.00 3.25
910 935 3.091633 TCACCTACCACTACCACTACC 57.908 52.381 0.00 0.00 0.00 3.18
911 936 3.828451 TGTTCACCTACCACTACCACTAC 59.172 47.826 0.00 0.00 0.00 2.73
912 937 4.116782 TGTTCACCTACCACTACCACTA 57.883 45.455 0.00 0.00 0.00 2.74
930 955 7.361457 TCGATCTGATCTACCCTAAATTGTT 57.639 36.000 15.16 0.00 0.00 2.83
931 956 6.517529 GCTCGATCTGATCTACCCTAAATTGT 60.518 42.308 15.16 0.00 0.00 2.71
934 959 5.080337 TGCTCGATCTGATCTACCCTAAAT 58.920 41.667 15.16 0.00 0.00 1.40
936 961 4.100279 TGCTCGATCTGATCTACCCTAA 57.900 45.455 15.16 0.00 0.00 2.69
937 962 3.790089 TGCTCGATCTGATCTACCCTA 57.210 47.619 15.16 0.00 0.00 3.53
938 963 2.666272 TGCTCGATCTGATCTACCCT 57.334 50.000 15.16 0.00 0.00 4.34
939 964 2.165437 GGATGCTCGATCTGATCTACCC 59.835 54.545 15.16 4.83 0.00 3.69
964 1009 1.073548 GCTCGGTTGGGTTGGGTTA 59.926 57.895 0.00 0.00 0.00 2.85
979 1024 3.438017 ATTCGCTGGCTCTCGGCTC 62.438 63.158 0.00 0.00 45.36 4.70
981 1026 2.964389 GATTCGCTGGCTCTCGGC 60.964 66.667 0.00 0.00 44.14 5.54
1116 1164 1.524848 AGAAGAAGAGACGCTCGACA 58.475 50.000 0.00 0.00 35.36 4.35
1120 1168 1.532298 GCGGTAGAAGAAGAGACGCTC 60.532 57.143 0.00 0.00 41.99 5.03
1125 1173 0.809385 CGTGGCGGTAGAAGAAGAGA 59.191 55.000 0.00 0.00 0.00 3.10
1282 1330 3.522731 CTGGGACTCGGCGAGGAG 61.523 72.222 36.81 23.06 39.97 3.69
1546 1597 0.396435 TGTGAAGGATCAGCACCGTT 59.604 50.000 8.69 0.00 35.88 4.44
1554 1605 3.805928 ACGGCCTGTGAAGGATCA 58.194 55.556 0.00 0.00 0.00 2.92
1662 1719 2.604686 TGCGCTTGAGGAGGAGGT 60.605 61.111 9.73 0.00 0.00 3.85
1663 1720 2.186384 CTGCGCTTGAGGAGGAGG 59.814 66.667 9.73 0.00 30.40 4.30
1866 1962 3.432588 ACTCTCGACCGGCACTCG 61.433 66.667 0.00 3.41 38.88 4.18
1947 2043 1.812922 GCCCGTGAGCTCATCTGTG 60.813 63.158 21.47 8.37 0.00 3.66
1950 2046 3.842923 CCGCCCGTGAGCTCATCT 61.843 66.667 21.47 0.00 0.00 2.90
2004 2109 1.539560 CCATCTCCCTGATCGCCGAT 61.540 60.000 0.00 0.00 32.05 4.18
2322 2433 3.333189 CGATGCGATGCCGGTCAG 61.333 66.667 1.90 0.00 36.06 3.51
2330 2441 3.928769 CACACGGGCGATGCGATG 61.929 66.667 0.00 0.00 0.00 3.84
2331 2442 4.451150 ACACACGGGCGATGCGAT 62.451 61.111 0.00 0.00 0.00 4.58
2353 2464 1.468127 CACACACACACACACACACAT 59.532 47.619 0.00 0.00 0.00 3.21
2400 3698 3.985279 GCGACAGTACAGTATTGTCACAA 59.015 43.478 26.98 0.00 43.22 3.33
2404 3702 3.608506 CACAGCGACAGTACAGTATTGTC 59.391 47.826 21.05 21.05 40.68 3.18
2408 3706 2.817844 TGACACAGCGACAGTACAGTAT 59.182 45.455 0.00 0.00 0.00 2.12
2411 3709 2.134201 TTGACACAGCGACAGTACAG 57.866 50.000 0.00 0.00 0.00 2.74
2414 3712 6.606234 TTTAAATTTGACACAGCGACAGTA 57.394 33.333 0.00 0.00 0.00 2.74
2483 3781 7.500141 AGTTTAGTTGCAGTTTGGATGAAAAT 58.500 30.769 0.00 0.00 0.00 1.82
2548 3846 9.614792 GGGTTTAATTAGTGAGTTGACTATGAT 57.385 33.333 0.00 0.00 0.00 2.45
2549 3847 8.598916 TGGGTTTAATTAGTGAGTTGACTATGA 58.401 33.333 0.00 0.00 0.00 2.15
2550 3848 8.786826 TGGGTTTAATTAGTGAGTTGACTATG 57.213 34.615 0.00 0.00 0.00 2.23
2551 3849 9.975218 AATGGGTTTAATTAGTGAGTTGACTAT 57.025 29.630 0.00 0.00 0.00 2.12
2553 3851 9.802039 TTAATGGGTTTAATTAGTGAGTTGACT 57.198 29.630 0.00 0.00 0.00 3.41
2566 3864 9.942850 CCTTGTTTCTCATTTAATGGGTTTAAT 57.057 29.630 4.61 0.00 30.03 1.40
2567 3865 8.371699 CCCTTGTTTCTCATTTAATGGGTTTAA 58.628 33.333 4.61 0.00 31.00 1.52
2568 3866 7.038658 CCCCTTGTTTCTCATTTAATGGGTTTA 60.039 37.037 4.61 0.00 31.00 2.01
2569 3867 6.239858 CCCCTTGTTTCTCATTTAATGGGTTT 60.240 38.462 4.61 0.00 31.00 3.27
2570 3868 5.248248 CCCCTTGTTTCTCATTTAATGGGTT 59.752 40.000 4.61 0.00 31.00 4.11
2571 3869 4.777366 CCCCTTGTTTCTCATTTAATGGGT 59.223 41.667 4.61 0.00 31.00 4.51
2572 3870 4.383010 GCCCCTTGTTTCTCATTTAATGGG 60.383 45.833 5.02 1.23 0.00 4.00
2573 3871 4.467438 AGCCCCTTGTTTCTCATTTAATGG 59.533 41.667 5.02 0.00 0.00 3.16
2574 3872 5.185635 TGAGCCCCTTGTTTCTCATTTAATG 59.814 40.000 0.00 0.00 31.35 1.90
2575 3873 5.185828 GTGAGCCCCTTGTTTCTCATTTAAT 59.814 40.000 0.00 0.00 37.81 1.40
2576 3874 4.522789 GTGAGCCCCTTGTTTCTCATTTAA 59.477 41.667 0.00 0.00 37.81 1.52
2577 3875 4.079253 GTGAGCCCCTTGTTTCTCATTTA 58.921 43.478 0.00 0.00 37.81 1.40
2578 3876 2.893489 GTGAGCCCCTTGTTTCTCATTT 59.107 45.455 0.00 0.00 37.81 2.32
2579 3877 2.519013 GTGAGCCCCTTGTTTCTCATT 58.481 47.619 0.00 0.00 37.81 2.57
2580 3878 1.611673 CGTGAGCCCCTTGTTTCTCAT 60.612 52.381 0.00 0.00 37.81 2.90
2581 3879 0.250295 CGTGAGCCCCTTGTTTCTCA 60.250 55.000 0.00 0.00 33.64 3.27
2582 3880 0.250338 ACGTGAGCCCCTTGTTTCTC 60.250 55.000 0.00 0.00 0.00 2.87
2583 3881 0.535102 CACGTGAGCCCCTTGTTTCT 60.535 55.000 10.90 0.00 0.00 2.52
2584 3882 1.515521 CCACGTGAGCCCCTTGTTTC 61.516 60.000 19.30 0.00 0.00 2.78
2585 3883 1.528309 CCACGTGAGCCCCTTGTTT 60.528 57.895 19.30 0.00 0.00 2.83
2586 3884 2.113139 CCACGTGAGCCCCTTGTT 59.887 61.111 19.30 0.00 0.00 2.83
2587 3885 2.847234 TCCACGTGAGCCCCTTGT 60.847 61.111 19.30 0.00 0.00 3.16
2588 3886 2.046892 CTCCACGTGAGCCCCTTG 60.047 66.667 19.30 0.00 33.47 3.61
2595 3893 1.080230 CTGGACAGCTCCACGTGAG 60.080 63.158 19.30 13.46 42.15 3.51
2596 3894 2.574018 CCTGGACAGCTCCACGTGA 61.574 63.158 19.30 2.03 42.15 4.35
2597 3895 2.047844 CCTGGACAGCTCCACGTG 60.048 66.667 9.08 9.08 42.15 4.49
2598 3896 2.524394 ACCTGGACAGCTCCACGT 60.524 61.111 0.00 0.00 42.15 4.49
2599 3897 2.262915 GACCTGGACAGCTCCACG 59.737 66.667 0.00 0.00 42.15 4.94
2600 3898 1.004440 GTGACCTGGACAGCTCCAC 60.004 63.158 0.00 0.00 42.15 4.02
2601 3899 2.217038 GGTGACCTGGACAGCTCCA 61.217 63.158 18.64 0.00 45.11 3.86
2602 3900 1.484444 AAGGTGACCTGGACAGCTCC 61.484 60.000 26.19 12.54 43.70 4.70
2603 3901 1.205893 CTAAGGTGACCTGGACAGCTC 59.794 57.143 26.19 8.26 43.70 4.09
2604 3902 1.270907 CTAAGGTGACCTGGACAGCT 58.729 55.000 21.94 21.94 45.87 4.24
2605 3903 0.250513 CCTAAGGTGACCTGGACAGC 59.749 60.000 18.34 18.34 32.13 4.40
2606 3904 1.938585 TCCTAAGGTGACCTGGACAG 58.061 55.000 4.15 0.12 32.13 3.51
2607 3905 1.975680 GTTCCTAAGGTGACCTGGACA 59.024 52.381 4.15 0.00 32.13 4.02
2608 3906 1.975680 TGTTCCTAAGGTGACCTGGAC 59.024 52.381 4.15 0.00 32.13 4.02
2609 3907 2.257207 CTGTTCCTAAGGTGACCTGGA 58.743 52.381 4.15 5.62 32.13 3.86
2610 3908 1.978580 ACTGTTCCTAAGGTGACCTGG 59.021 52.381 4.15 2.67 32.13 4.45
2611 3909 2.289694 CCACTGTTCCTAAGGTGACCTG 60.290 54.545 4.15 0.00 32.13 4.00
2612 3910 1.978580 CCACTGTTCCTAAGGTGACCT 59.021 52.381 0.00 0.00 33.87 3.85
2613 3911 1.610886 GCCACTGTTCCTAAGGTGACC 60.611 57.143 0.00 0.00 32.12 4.02
2614 3912 1.348036 AGCCACTGTTCCTAAGGTGAC 59.652 52.381 0.00 0.00 32.12 3.67
2615 3913 1.623811 GAGCCACTGTTCCTAAGGTGA 59.376 52.381 0.00 0.00 32.12 4.02
2616 3914 1.339151 GGAGCCACTGTTCCTAAGGTG 60.339 57.143 0.00 0.00 38.73 4.00
2617 3915 0.984995 GGAGCCACTGTTCCTAAGGT 59.015 55.000 0.00 0.00 38.73 3.50
2618 3916 3.863407 GGAGCCACTGTTCCTAAGG 57.137 57.895 0.00 0.00 38.73 2.69
2623 3921 0.615331 TGATCAGGAGCCACTGTTCC 59.385 55.000 11.58 0.00 41.91 3.62
2624 3922 2.289945 ACTTGATCAGGAGCCACTGTTC 60.290 50.000 12.40 7.12 39.48 3.18
2625 3923 1.701847 ACTTGATCAGGAGCCACTGTT 59.298 47.619 12.40 0.00 39.48 3.16
2626 3924 1.356124 ACTTGATCAGGAGCCACTGT 58.644 50.000 12.40 0.00 39.48 3.55
2627 3925 2.486472 AACTTGATCAGGAGCCACTG 57.514 50.000 12.40 0.00 39.84 3.66
2628 3926 2.787994 CAAACTTGATCAGGAGCCACT 58.212 47.619 12.40 0.00 0.00 4.00
2629 3927 1.200948 GCAAACTTGATCAGGAGCCAC 59.799 52.381 12.40 0.00 0.00 5.01
2630 3928 1.538047 GCAAACTTGATCAGGAGCCA 58.462 50.000 12.40 0.00 0.00 4.75
2631 3929 0.449388 CGCAAACTTGATCAGGAGCC 59.551 55.000 12.40 0.00 0.00 4.70
2632 3930 1.442769 TCGCAAACTTGATCAGGAGC 58.557 50.000 12.40 10.97 0.00 4.70
2633 3931 3.181503 CCAATCGCAAACTTGATCAGGAG 60.182 47.826 12.40 2.02 0.00 3.69
2634 3932 2.749076 CCAATCGCAAACTTGATCAGGA 59.251 45.455 12.40 0.00 0.00 3.86
2635 3933 2.159338 CCCAATCGCAAACTTGATCAGG 60.159 50.000 2.78 2.78 0.00 3.86
2636 3934 2.489329 ACCCAATCGCAAACTTGATCAG 59.511 45.455 0.00 0.00 0.00 2.90
2637 3935 2.487762 GACCCAATCGCAAACTTGATCA 59.512 45.455 0.00 0.00 0.00 2.92
2638 3936 2.476185 CGACCCAATCGCAAACTTGATC 60.476 50.000 0.00 0.00 45.52 2.92
2639 3937 1.468520 CGACCCAATCGCAAACTTGAT 59.531 47.619 0.00 0.00 45.52 2.57
2640 3938 0.871722 CGACCCAATCGCAAACTTGA 59.128 50.000 0.00 0.00 45.52 3.02
2641 3939 3.383026 CGACCCAATCGCAAACTTG 57.617 52.632 0.00 0.00 45.52 3.16
2650 3948 1.859080 GACAAGATACGCGACCCAATC 59.141 52.381 15.93 7.55 0.00 2.67
2651 3949 1.480954 AGACAAGATACGCGACCCAAT 59.519 47.619 15.93 0.00 0.00 3.16
2652 3950 0.892755 AGACAAGATACGCGACCCAA 59.107 50.000 15.93 0.00 0.00 4.12
2653 3951 1.674441 CTAGACAAGATACGCGACCCA 59.326 52.381 15.93 0.00 0.00 4.51
2654 3952 1.001597 CCTAGACAAGATACGCGACCC 60.002 57.143 15.93 0.00 0.00 4.46
2655 3953 1.945394 TCCTAGACAAGATACGCGACC 59.055 52.381 15.93 0.22 0.00 4.79
2656 3954 3.687572 TTCCTAGACAAGATACGCGAC 57.312 47.619 15.93 3.56 0.00 5.19
2657 3955 4.707030 TTTTCCTAGACAAGATACGCGA 57.293 40.909 15.93 0.00 0.00 5.87
2677 3975 1.680735 TCACCGCTCTGTTGCATTTTT 59.319 42.857 0.00 0.00 0.00 1.94
2678 3976 1.001378 GTCACCGCTCTGTTGCATTTT 60.001 47.619 0.00 0.00 0.00 1.82
2679 3977 0.593128 GTCACCGCTCTGTTGCATTT 59.407 50.000 0.00 0.00 0.00 2.32
2680 3978 0.534877 TGTCACCGCTCTGTTGCATT 60.535 50.000 0.00 0.00 0.00 3.56
2681 3979 1.071299 TGTCACCGCTCTGTTGCAT 59.929 52.632 0.00 0.00 0.00 3.96
2682 3980 1.887242 GTGTCACCGCTCTGTTGCA 60.887 57.895 0.00 0.00 0.00 4.08
2683 3981 2.607892 GGTGTCACCGCTCTGTTGC 61.608 63.158 6.18 0.00 0.00 4.17
2684 3982 1.961277 GGGTGTCACCGCTCTGTTG 60.961 63.158 15.93 0.00 39.83 3.33
2685 3983 0.830444 TAGGGTGTCACCGCTCTGTT 60.830 55.000 15.93 0.00 39.83 3.16
2686 3984 0.830444 TTAGGGTGTCACCGCTCTGT 60.830 55.000 15.93 0.00 39.83 3.41
2687 3985 0.108615 CTTAGGGTGTCACCGCTCTG 60.109 60.000 15.93 6.99 39.83 3.35
2688 3986 0.251653 TCTTAGGGTGTCACCGCTCT 60.252 55.000 15.93 9.88 39.83 4.09
2689 3987 0.173708 CTCTTAGGGTGTCACCGCTC 59.826 60.000 15.93 2.27 39.83 5.03
2690 3988 1.889530 GCTCTTAGGGTGTCACCGCT 61.890 60.000 15.93 15.35 39.83 5.52
2691 3989 1.448013 GCTCTTAGGGTGTCACCGC 60.448 63.158 15.93 8.61 39.83 5.68
2692 3990 0.537188 ATGCTCTTAGGGTGTCACCG 59.463 55.000 15.93 2.12 39.83 4.94
2693 3991 2.789409 AATGCTCTTAGGGTGTCACC 57.211 50.000 14.13 14.13 37.60 4.02
2694 3992 3.010420 GGAAATGCTCTTAGGGTGTCAC 58.990 50.000 0.00 0.00 0.00 3.67
2695 3993 2.642311 TGGAAATGCTCTTAGGGTGTCA 59.358 45.455 0.00 0.00 0.00 3.58
2696 3994 3.350219 TGGAAATGCTCTTAGGGTGTC 57.650 47.619 0.00 0.00 0.00 3.67
2735 4033 2.567615 ACATCTCCTGTTTTAGACCGCT 59.432 45.455 0.00 0.00 32.90 5.52
2818 4117 6.168389 GCTCTTTTGAACCATCAATTTGGAT 58.832 36.000 3.10 0.00 44.70 3.41
2833 4133 7.523293 TCATTTATTGGAGTTGCTCTTTTGA 57.477 32.000 0.00 0.00 0.00 2.69
3153 4461 0.898320 CGGAGCAGAAGAAGAAGGGA 59.102 55.000 0.00 0.00 0.00 4.20
3204 4512 1.028330 AGCATCCGAAGTACGTCCGA 61.028 55.000 3.08 2.92 40.78 4.55
3205 4513 0.591741 GAGCATCCGAAGTACGTCCG 60.592 60.000 3.08 0.82 40.78 4.79
3239 4547 0.608640 GACCAACGAGGAGGTGATGT 59.391 55.000 5.70 0.00 40.93 3.06
3244 4552 2.637383 GCGAGACCAACGAGGAGGT 61.637 63.158 5.70 0.00 41.22 3.85
3280 4588 0.806868 ATGACGACGAAGAAGCCGTA 59.193 50.000 0.00 0.00 40.67 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.