Multiple sequence alignment - TraesCS3D01G545400
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS3D01G545400
chr3D
100.000
3371
0
0
1
3371
615008999
615005629
0.000000e+00
6226.0
1
TraesCS3D01G545400
chr3D
93.036
718
49
1
2654
3371
30688957
30688241
0.000000e+00
1048.0
2
TraesCS3D01G545400
chr3B
94.097
1711
92
3
951
2653
28798492
28796783
0.000000e+00
2591.0
3
TraesCS3D01G545400
chr3B
93.387
741
49
0
1485
2225
813144077
813144817
0.000000e+00
1098.0
4
TraesCS3D01G545400
chr3B
90.433
554
43
3
949
1492
813142807
813143360
0.000000e+00
721.0
5
TraesCS3D01G545400
chr3B
89.242
409
38
3
22
430
813141866
813142268
1.080000e-139
507.0
6
TraesCS3D01G545400
chr3B
89.189
407
42
2
2223
2629
813148447
813148851
1.080000e-139
507.0
7
TraesCS3D01G545400
chr3B
85.879
347
47
1
2270
2616
28796601
28796257
5.310000e-98
368.0
8
TraesCS3D01G545400
chr3B
83.912
317
26
7
498
802
813142291
813142594
2.560000e-71
279.0
9
TraesCS3D01G545400
chr3B
84.716
229
34
1
2265
2493
813277274
813277047
9.410000e-56
228.0
10
TraesCS3D01G545400
chr3B
92.063
63
5
0
719
781
28800151
28800089
4.630000e-14
89.8
11
TraesCS3D01G545400
chr2D
93.602
719
45
1
2653
3371
174953635
174954352
0.000000e+00
1072.0
12
TraesCS3D01G545400
chr2D
93.324
719
47
1
2653
3371
175740242
175739525
0.000000e+00
1061.0
13
TraesCS3D01G545400
chr6D
93.463
719
46
1
2653
3371
379499626
379498909
0.000000e+00
1066.0
14
TraesCS3D01G545400
chr6D
92.907
719
50
1
2653
3371
413783044
413782327
0.000000e+00
1044.0
15
TraesCS3D01G545400
chr5D
93.324
719
47
1
2653
3371
419410203
419410920
0.000000e+00
1061.0
16
TraesCS3D01G545400
chr7D
93.185
719
48
1
2653
3371
50412335
50413052
0.000000e+00
1055.0
17
TraesCS3D01G545400
chr7D
93.185
719
48
1
2653
3371
207227169
207226452
0.000000e+00
1055.0
18
TraesCS3D01G545400
chr4D
92.907
719
49
2
2653
3371
485606441
485605725
0.000000e+00
1044.0
19
TraesCS3D01G545400
chr1D
91.139
79
7
0
1935
2013
461830400
461830478
1.280000e-19
108.0
20
TraesCS3D01G545400
chr1B
89.873
79
8
0
1935
2013
635492299
635492377
5.950000e-18
102.0
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS3D01G545400
chr3D
615005629
615008999
3370
True
6226.000000
6226
100.000000
1
3371
1
chr3D.!!$R2
3370
1
TraesCS3D01G545400
chr3D
30688241
30688957
716
True
1048.000000
1048
93.036000
2654
3371
1
chr3D.!!$R1
717
2
TraesCS3D01G545400
chr3B
28796257
28800151
3894
True
1016.266667
2591
90.679667
719
2653
3
chr3B.!!$R2
1934
3
TraesCS3D01G545400
chr3B
813141866
813148851
6985
False
622.400000
1098
89.232600
22
2629
5
chr3B.!!$F1
2607
4
TraesCS3D01G545400
chr2D
174953635
174954352
717
False
1072.000000
1072
93.602000
2653
3371
1
chr2D.!!$F1
718
5
TraesCS3D01G545400
chr2D
175739525
175740242
717
True
1061.000000
1061
93.324000
2653
3371
1
chr2D.!!$R1
718
6
TraesCS3D01G545400
chr6D
379498909
379499626
717
True
1066.000000
1066
93.463000
2653
3371
1
chr6D.!!$R1
718
7
TraesCS3D01G545400
chr6D
413782327
413783044
717
True
1044.000000
1044
92.907000
2653
3371
1
chr6D.!!$R2
718
8
TraesCS3D01G545400
chr5D
419410203
419410920
717
False
1061.000000
1061
93.324000
2653
3371
1
chr5D.!!$F1
718
9
TraesCS3D01G545400
chr7D
50412335
50413052
717
False
1055.000000
1055
93.185000
2653
3371
1
chr7D.!!$F1
718
10
TraesCS3D01G545400
chr7D
207226452
207227169
717
True
1055.000000
1055
93.185000
2653
3371
1
chr7D.!!$R1
718
11
TraesCS3D01G545400
chr4D
485605725
485606441
716
True
1044.000000
1044
92.907000
2653
3371
1
chr4D.!!$R1
718
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
859
947
0.037697
TCCAATAGCAAGCACGTCGT
60.038
50.0
0.0
0.0
0.0
4.34
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
2839
8787
0.036875
ACCACCAAGCTGCTAAGGAC
59.963
55.0
23.02
0.0
0.0
3.85
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
17
18
4.016706
CCCAGACCGTGTCCACCC
62.017
72.222
1.06
0.00
32.18
4.61
18
19
2.923035
CCAGACCGTGTCCACCCT
60.923
66.667
1.06
0.00
32.18
4.34
19
20
2.343758
CAGACCGTGTCCACCCTG
59.656
66.667
1.06
0.00
32.18
4.45
20
21
2.200370
AGACCGTGTCCACCCTGA
59.800
61.111
1.06
0.00
32.18
3.86
49
50
2.602211
GACTCATGTTCATGCTCACTCG
59.398
50.000
7.80
0.00
0.00
4.18
51
52
1.550072
TCATGTTCATGCTCACTCGGA
59.450
47.619
7.80
0.00
0.00
4.55
72
73
1.006758
TGGTCCCCGTACTCATTCTCT
59.993
52.381
0.00
0.00
0.00
3.10
97
98
2.427753
GATCCTGCCCATCCGTCC
59.572
66.667
0.00
0.00
0.00
4.79
109
110
3.550820
CCATCCGTCCAATAATCACCAA
58.449
45.455
0.00
0.00
0.00
3.67
114
115
3.352648
CGTCCAATAATCACCAAGGGTT
58.647
45.455
0.00
0.00
31.02
4.11
122
123
0.107831
TCACCAAGGGTTTGTCGAGG
59.892
55.000
0.00
0.00
31.02
4.63
127
128
1.789576
AAGGGTTTGTCGAGGCCCAT
61.790
55.000
0.00
1.94
43.42
4.00
156
157
2.198827
TGACGGTTCAAAGGCATGAT
57.801
45.000
0.00
0.00
0.00
2.45
157
158
3.342377
TGACGGTTCAAAGGCATGATA
57.658
42.857
0.00
0.00
0.00
2.15
170
171
3.532892
GCATGATAGCCTGAATGTTCG
57.467
47.619
0.00
0.00
0.00
3.95
171
172
2.874701
GCATGATAGCCTGAATGTTCGT
59.125
45.455
0.00
0.00
0.00
3.85
172
173
3.303593
GCATGATAGCCTGAATGTTCGTG
60.304
47.826
0.00
0.00
0.00
4.35
173
174
3.885724
TGATAGCCTGAATGTTCGTGA
57.114
42.857
0.00
0.00
0.00
4.35
174
175
3.785486
TGATAGCCTGAATGTTCGTGAG
58.215
45.455
0.00
0.00
0.00
3.51
175
176
2.672961
TAGCCTGAATGTTCGTGAGG
57.327
50.000
0.00
0.00
0.00
3.86
176
177
1.796796
GCCTGAATGTTCGTGAGGC
59.203
57.895
6.79
6.79
42.37
4.70
177
178
3.231734
CCTGAATGTTCGTGAGGCA
57.768
52.632
0.00
0.00
0.00
4.75
182
183
0.670546
AATGTTCGTGAGGCAGACCG
60.671
55.000
0.00
0.00
42.76
4.79
210
211
1.622607
CGGTGGGGTTGCTCCTGATA
61.623
60.000
0.00
0.00
36.25
2.15
215
216
1.883084
GGTTGCTCCTGATACGGCG
60.883
63.158
4.80
4.80
0.00
6.46
221
222
1.000607
GCTCCTGATACGGCGACATAA
60.001
52.381
16.62
0.00
0.00
1.90
256
257
5.393461
CGTTGTACGGGATTTCTAGTTAGGT
60.393
44.000
0.00
0.00
38.08
3.08
313
314
0.179045
CCACCGAGGGGATCAATGAC
60.179
60.000
0.00
0.00
36.97
3.06
329
330
2.925170
ACGGCCAGGCTCTTGAGT
60.925
61.111
12.43
0.00
0.00
3.41
335
336
1.673665
CAGGCTCTTGAGTGTGGGC
60.674
63.158
0.00
0.00
0.00
5.36
355
356
1.063806
GAGTCGACAGTGTGCATGTC
58.936
55.000
19.50
8.58
42.94
3.06
356
357
0.319900
AGTCGACAGTGTGCATGTCC
60.320
55.000
19.50
1.32
43.36
4.02
358
359
0.105778
TCGACAGTGTGCATGTCCAA
59.894
50.000
12.20
0.21
43.36
3.53
370
371
1.068055
CATGTCCAAGCTGCACCTTTC
60.068
52.381
1.02
0.00
0.00
2.62
385
386
1.065854
CCTTTCGACATGGAGCTCCTT
60.066
52.381
32.28
24.06
36.82
3.36
386
387
2.005451
CTTTCGACATGGAGCTCCTTG
58.995
52.381
35.34
35.34
44.21
3.61
418
419
0.116342
TAGGTGCAGAGACCCTCCAA
59.884
55.000
0.00
0.00
36.56
3.53
427
428
1.219393
GACCCTCCAAGAAGCCGAG
59.781
63.158
0.00
0.00
0.00
4.63
428
429
2.124942
CCCTCCAAGAAGCCGAGC
60.125
66.667
0.00
0.00
0.00
5.03
429
430
2.665000
CCTCCAAGAAGCCGAGCA
59.335
61.111
0.00
0.00
0.00
4.26
430
431
1.003355
CCTCCAAGAAGCCGAGCAA
60.003
57.895
0.00
0.00
0.00
3.91
431
432
0.393537
CCTCCAAGAAGCCGAGCAAT
60.394
55.000
0.00
0.00
0.00
3.56
432
433
1.012841
CTCCAAGAAGCCGAGCAATC
58.987
55.000
0.00
0.00
0.00
2.67
433
434
0.615331
TCCAAGAAGCCGAGCAATCT
59.385
50.000
0.00
0.00
0.00
2.40
434
435
0.731417
CCAAGAAGCCGAGCAATCTG
59.269
55.000
0.00
0.00
29.88
2.90
435
436
1.446907
CAAGAAGCCGAGCAATCTGT
58.553
50.000
0.00
0.00
29.88
3.41
436
437
1.808945
CAAGAAGCCGAGCAATCTGTT
59.191
47.619
0.00
0.00
29.88
3.16
437
438
1.446907
AGAAGCCGAGCAATCTGTTG
58.553
50.000
0.00
0.00
38.39
3.33
438
439
1.002430
AGAAGCCGAGCAATCTGTTGA
59.998
47.619
0.00
0.00
37.53
3.18
439
440
1.129437
GAAGCCGAGCAATCTGTTGAC
59.871
52.381
0.00
0.00
37.53
3.18
440
441
0.322975
AGCCGAGCAATCTGTTGACT
59.677
50.000
0.00
0.00
37.53
3.41
441
442
1.550524
AGCCGAGCAATCTGTTGACTA
59.449
47.619
0.00
0.00
37.53
2.59
442
443
2.169352
AGCCGAGCAATCTGTTGACTAT
59.831
45.455
0.00
0.00
37.53
2.12
443
444
2.286294
GCCGAGCAATCTGTTGACTATG
59.714
50.000
0.00
0.00
37.53
2.23
444
445
3.785486
CCGAGCAATCTGTTGACTATGA
58.215
45.455
0.00
0.00
37.53
2.15
445
446
3.553511
CCGAGCAATCTGTTGACTATGAC
59.446
47.826
0.00
0.00
37.53
3.06
446
447
3.241553
CGAGCAATCTGTTGACTATGACG
59.758
47.826
0.00
0.00
37.53
4.35
447
448
4.424626
GAGCAATCTGTTGACTATGACGA
58.575
43.478
0.00
0.00
37.53
4.20
448
449
4.428209
AGCAATCTGTTGACTATGACGAG
58.572
43.478
0.00
0.00
37.53
4.18
449
450
3.553511
GCAATCTGTTGACTATGACGAGG
59.446
47.826
0.00
0.00
37.53
4.63
450
451
2.941453
TCTGTTGACTATGACGAGGC
57.059
50.000
0.00
0.00
0.00
4.70
451
452
1.132453
TCTGTTGACTATGACGAGGCG
59.868
52.381
0.00
0.00
0.00
5.52
452
453
0.457853
TGTTGACTATGACGAGGCGC
60.458
55.000
0.00
0.00
0.00
6.53
453
454
0.457853
GTTGACTATGACGAGGCGCA
60.458
55.000
10.83
0.00
0.00
6.09
475
476
4.710695
CGTCAGGCGGCGTGTGTA
62.711
66.667
20.62
0.66
36.85
2.90
476
477
2.809601
GTCAGGCGGCGTGTGTAG
60.810
66.667
20.62
0.00
0.00
2.74
477
478
4.735132
TCAGGCGGCGTGTGTAGC
62.735
66.667
20.62
0.00
0.00
3.58
484
485
3.124921
GCGTGTGTAGCCGGCAAT
61.125
61.111
31.54
12.06
0.00
3.56
485
486
2.784596
CGTGTGTAGCCGGCAATG
59.215
61.111
31.54
9.96
0.00
2.82
486
487
2.485122
GTGTGTAGCCGGCAATGC
59.515
61.111
31.54
13.51
0.00
3.56
487
488
2.033294
TGTGTAGCCGGCAATGCA
59.967
55.556
31.54
16.38
0.00
3.96
488
489
2.039974
TGTGTAGCCGGCAATGCAG
61.040
57.895
31.54
2.15
0.00
4.41
489
490
3.133464
TGTAGCCGGCAATGCAGC
61.133
61.111
31.54
9.59
0.00
5.25
490
491
3.133464
GTAGCCGGCAATGCAGCA
61.133
61.111
31.54
0.00
35.83
4.41
491
492
2.360978
TAGCCGGCAATGCAGCAA
60.361
55.556
31.54
0.00
35.83
3.91
492
493
2.699768
TAGCCGGCAATGCAGCAAC
61.700
57.895
31.54
3.24
35.83
4.17
494
495
4.440127
CCGGCAATGCAGCAACCC
62.440
66.667
7.79
0.00
35.83
4.11
495
496
3.376078
CGGCAATGCAGCAACCCT
61.376
61.111
7.79
0.00
35.83
4.34
496
497
2.934570
CGGCAATGCAGCAACCCTT
61.935
57.895
7.79
0.00
35.83
3.95
499
500
2.051941
CAATGCAGCAACCCTTGGT
58.948
52.632
0.00
0.00
43.12
3.67
506
507
2.439104
GCAACCCTTGGTGGCCAAA
61.439
57.895
7.24
0.00
46.35
3.28
526
527
3.179265
CGGCTCAGTGTAACGGCG
61.179
66.667
4.80
4.80
45.86
6.46
528
529
2.736995
GCTCAGTGTAACGGCGCA
60.737
61.111
10.83
0.00
42.30
6.09
532
533
1.959226
CAGTGTAACGGCGCAAGGT
60.959
57.895
10.83
3.26
45.86
3.50
542
543
2.317609
GCGCAAGGTCGACACATGT
61.318
57.895
18.91
0.00
38.28
3.21
567
568
2.900546
TCCCAATAATTTTGGTGCCGTT
59.099
40.909
14.39
0.00
37.88
4.44
596
597
3.785859
GGATCTCCACGGCAGCCA
61.786
66.667
13.30
0.00
35.64
4.75
686
697
1.139734
ACGTCAGCGCATCAGGTAG
59.860
57.895
11.47
0.00
42.83
3.18
687
698
1.313091
ACGTCAGCGCATCAGGTAGA
61.313
55.000
11.47
0.00
42.83
2.59
705
716
2.723746
GCGGCTGGCATTGTATGG
59.276
61.111
1.08
0.00
42.87
2.74
706
717
2.120909
GCGGCTGGCATTGTATGGT
61.121
57.895
1.08
0.00
42.87
3.55
707
718
1.666209
GCGGCTGGCATTGTATGGTT
61.666
55.000
1.08
0.00
42.87
3.67
708
719
0.101040
CGGCTGGCATTGTATGGTTG
59.899
55.000
1.08
0.00
0.00
3.77
712
725
1.406539
CTGGCATTGTATGGTTGAGCC
59.593
52.381
0.00
0.00
40.93
4.70
717
730
3.738982
CATTGTATGGTTGAGCCGGATA
58.261
45.455
5.05
0.00
41.21
2.59
728
741
3.214123
CCGGATAGGTCGGCGTGA
61.214
66.667
6.85
0.00
41.07
4.35
736
749
2.576317
GTCGGCGTGACGTAGAGC
60.576
66.667
6.91
0.00
37.96
4.09
747
760
2.508663
GTAGAGCAACCGGACGCC
60.509
66.667
9.46
4.39
0.00
5.68
791
804
7.549615
ACTACACCTTCTTTCTGTGTTAAAC
57.450
36.000
0.00
0.00
42.75
2.01
796
809
8.145122
ACACCTTCTTTCTGTGTTAAACAAAAA
58.855
29.630
0.00
0.00
40.12
1.94
797
810
9.150348
CACCTTCTTTCTGTGTTAAACAAAAAT
57.850
29.630
0.00
0.00
38.67
1.82
801
814
8.865590
TCTTTCTGTGTTAAACAAAAATAGGC
57.134
30.769
0.00
0.00
38.67
3.93
802
815
8.691797
TCTTTCTGTGTTAAACAAAAATAGGCT
58.308
29.630
0.00
0.00
38.67
4.58
803
816
9.959749
CTTTCTGTGTTAAACAAAAATAGGCTA
57.040
29.630
0.00
0.00
38.67
3.93
804
817
9.738832
TTTCTGTGTTAAACAAAAATAGGCTAC
57.261
29.630
0.00
0.00
38.67
3.58
805
818
8.453238
TCTGTGTTAAACAAAAATAGGCTACA
57.547
30.769
0.00
0.00
38.67
2.74
807
820
8.859517
TGTGTTAAACAAAAATAGGCTACAAC
57.140
30.769
0.00
0.00
35.24
3.32
808
821
8.688151
TGTGTTAAACAAAAATAGGCTACAACT
58.312
29.630
0.00
0.00
35.24
3.16
810
823
9.738832
TGTTAAACAAAAATAGGCTACAACTTC
57.261
29.630
0.00
0.00
0.00
3.01
811
824
9.188588
GTTAAACAAAAATAGGCTACAACTTCC
57.811
33.333
0.00
0.00
0.00
3.46
837
925
4.380841
TTTGCATGGCTCATGAGAAATC
57.619
40.909
27.04
12.01
43.81
2.17
859
947
0.037697
TCCAATAGCAAGCACGTCGT
60.038
50.000
0.00
0.00
0.00
4.34
863
951
3.296628
CAATAGCAAGCACGTCGTTTTT
58.703
40.909
0.00
0.00
0.00
1.94
892
991
1.681538
TGTAGCAGAGGAGACCGATC
58.318
55.000
0.00
0.00
0.00
3.69
918
2476
5.591877
GGTAGGTACATATATACCCTCACCG
59.408
48.000
6.57
0.00
45.13
4.94
919
2477
5.525454
AGGTACATATATACCCTCACCGA
57.475
43.478
6.57
0.00
45.13
4.69
921
2479
6.500336
AGGTACATATATACCCTCACCGATT
58.500
40.000
6.57
0.00
45.13
3.34
922
2480
7.645942
AGGTACATATATACCCTCACCGATTA
58.354
38.462
6.57
0.00
45.13
1.75
923
2481
8.287350
AGGTACATATATACCCTCACCGATTAT
58.713
37.037
6.57
0.00
45.13
1.28
924
2482
8.574737
GGTACATATATACCCTCACCGATTATC
58.425
40.741
0.00
0.00
39.05
1.75
925
2483
9.352191
GTACATATATACCCTCACCGATTATCT
57.648
37.037
0.00
0.00
0.00
1.98
934
2492
8.522542
ACCCTCACCGATTATCTATATCTAAC
57.477
38.462
0.00
0.00
0.00
2.34
935
2493
7.560626
ACCCTCACCGATTATCTATATCTAACC
59.439
40.741
0.00
0.00
0.00
2.85
936
2494
7.255173
CCCTCACCGATTATCTATATCTAACCG
60.255
44.444
0.00
0.00
0.00
4.44
937
2495
7.498239
CCTCACCGATTATCTATATCTAACCGA
59.502
40.741
0.00
0.00
0.00
4.69
938
2496
8.975663
TCACCGATTATCTATATCTAACCGAT
57.024
34.615
0.00
0.00
36.11
4.18
939
2497
9.053840
TCACCGATTATCTATATCTAACCGATC
57.946
37.037
0.00
0.00
33.48
3.69
940
2498
8.010540
CACCGATTATCTATATCTAACCGATCG
58.989
40.741
8.51
8.51
33.48
3.69
941
2499
7.519843
CCGATTATCTATATCTAACCGATCGG
58.480
42.308
32.20
32.20
43.94
4.18
942
2500
7.361031
CCGATTATCTATATCTAACCGATCGGG
60.361
44.444
35.87
19.75
45.00
5.14
943
2501
6.630444
TTATCTATATCTAACCGATCGGGC
57.370
41.667
35.87
0.00
40.62
6.13
944
2502
3.959293
TCTATATCTAACCGATCGGGCA
58.041
45.455
35.87
22.23
40.62
5.36
945
2503
3.945921
TCTATATCTAACCGATCGGGCAG
59.054
47.826
35.87
29.26
40.62
4.85
946
2504
2.281539
TATCTAACCGATCGGGCAGA
57.718
50.000
35.87
32.73
40.62
4.26
947
2505
0.962489
ATCTAACCGATCGGGCAGAG
59.038
55.000
35.87
24.91
40.62
3.35
960
2518
2.967270
GCAGAGGAGCCAACCAATT
58.033
52.632
0.00
0.00
0.00
2.32
961
2519
2.128771
GCAGAGGAGCCAACCAATTA
57.871
50.000
0.00
0.00
0.00
1.40
1048
2612
4.465512
CTGCGGTCGCCAACATGC
62.466
66.667
12.94
0.00
41.09
4.06
1129
2699
3.048941
GCTACGGCCGACTTCGTCT
62.049
63.158
35.90
9.38
40.31
4.18
1130
2700
1.709147
GCTACGGCCGACTTCGTCTA
61.709
60.000
35.90
10.16
40.31
2.59
1137
2707
1.731750
GCCGACTTCGTCTACTTCCAC
60.732
57.143
0.00
0.00
37.74
4.02
1159
2729
2.514592
TCTGCAAGCTATGGCGCC
60.515
61.111
22.73
22.73
44.37
6.53
1316
2889
2.542907
CGCCACCAATATCCGGCAC
61.543
63.158
0.00
0.00
45.14
5.01
1391
2964
4.195334
CCCCTCCATCCGCCCAAG
62.195
72.222
0.00
0.00
0.00
3.61
1415
2988
2.656002
CCTCTATGACCCTCTGTTCGA
58.344
52.381
0.00
0.00
0.00
3.71
1446
3019
1.153756
CCACCTGCCACTTTTCCCT
59.846
57.895
0.00
0.00
0.00
4.20
1488
3061
0.755698
ACCCGAGTGGCATCGTCTAT
60.756
55.000
14.88
0.11
41.12
1.98
1556
3853
1.991121
TACGTGTCTGAGTTCAGGGT
58.009
50.000
9.13
5.60
43.91
4.34
1605
3902
1.123928
GGACGGTCATCCAGAGGAAT
58.876
55.000
10.76
0.00
38.77
3.01
1653
3950
2.351418
CTGCATCGCGTATTTTTCTGGA
59.649
45.455
5.77
0.00
0.00
3.86
1668
3965
4.591321
TTCTGGAAATATCCTTGTGGCT
57.409
40.909
0.00
0.00
46.70
4.75
1716
4013
0.254462
TGAAGTCCACCACAGCAACA
59.746
50.000
0.00
0.00
0.00
3.33
1761
4058
4.752879
CCGTGGTCGTTGCCGGAT
62.753
66.667
5.05
0.00
43.01
4.18
1838
4135
1.663388
TGACGGTGCACATCACGAC
60.663
57.895
20.43
13.28
46.56
4.34
1902
4199
5.705441
TGGTGTCTTGATGTTTATTCACTCC
59.295
40.000
0.00
0.00
0.00
3.85
1953
4250
0.545309
TGAGGTGGGTGAGGAAGGAG
60.545
60.000
0.00
0.00
0.00
3.69
2076
4373
0.536687
TCTCGGACGACAAGGACAGT
60.537
55.000
0.00
0.00
0.00
3.55
2179
4476
0.324645
ATGGCTTAACCCCCAGCTTG
60.325
55.000
0.00
0.00
37.83
4.01
2240
8169
3.151554
GCAATAGCATGATCCACATCCA
58.848
45.455
0.00
0.00
41.58
3.41
2245
8174
2.980379
AGCATGATCCACATCCAGAGAT
59.020
45.455
0.00
0.00
37.07
2.75
2318
8247
4.577988
AGAGTTCTCAGCTCCTACACTA
57.422
45.455
2.64
0.00
33.69
2.74
2331
8260
4.817517
TCCTACACTAGTTTAGCAAGCAC
58.182
43.478
10.11
0.00
0.00
4.40
2409
8338
1.136565
CGGCCTTGTAACAATGGCG
59.863
57.895
0.00
11.35
45.75
5.69
2451
8380
3.712881
GCCGTTGCCACACTCGAC
61.713
66.667
0.00
0.00
0.00
4.20
2558
8487
4.883083
TCCGTTGGAGCAATGTAGATATC
58.117
43.478
0.00
0.00
0.00
1.63
2696
8625
0.535102
CTGACAACCGGAAGCACCTT
60.535
55.000
9.46
0.00
36.31
3.50
2723
8671
1.594021
CCCCGCCAAAAACAACAGC
60.594
57.895
0.00
0.00
0.00
4.40
2782
8730
1.530720
CGCGCATGCTATTGTCCAATA
59.469
47.619
17.13
0.22
39.65
1.90
2784
8732
2.549754
GCGCATGCTATTGTCCAATACT
59.450
45.455
17.13
0.00
38.39
2.12
2818
8766
1.153369
TTAGTCATGCTGGCCTCGC
60.153
57.895
3.32
7.56
0.00
5.03
2819
8767
1.898330
TTAGTCATGCTGGCCTCGCA
61.898
55.000
19.97
19.97
42.25
5.10
2835
8783
3.990469
CCTCGCACCATAGTATCAATGAC
59.010
47.826
0.00
0.00
0.00
3.06
2839
8787
2.731451
CACCATAGTATCAATGACGCCG
59.269
50.000
0.00
0.00
0.00
6.46
2855
8803
1.296715
CCGTCCTTAGCAGCTTGGT
59.703
57.895
0.00
0.00
0.00
3.67
2901
8849
1.664017
CGAGGCTCCATCATCGCAG
60.664
63.158
9.32
0.00
0.00
5.18
3088
9036
0.544697
GAATACACCCCCATCACCGT
59.455
55.000
0.00
0.00
0.00
4.83
3090
9038
1.882308
ATACACCCCCATCACCGTAA
58.118
50.000
0.00
0.00
0.00
3.18
3283
9231
3.433306
TGTTCTTTACCCATGGACTGG
57.567
47.619
15.22
0.00
45.51
4.00
3307
9255
4.526970
ACATACCCCTAATGTCAAGCAAG
58.473
43.478
0.00
0.00
32.02
4.01
3322
9270
3.904136
AGCAAGACAATTTTCTCCACG
57.096
42.857
0.00
0.00
0.00
4.94
3325
9273
3.003275
GCAAGACAATTTTCTCCACGTCA
59.997
43.478
0.00
0.00
0.00
4.35
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
0
1
4.016706
GGGTGGACACGGTCTGGG
62.017
72.222
4.41
0.00
32.47
4.45
1
2
2.923035
AGGGTGGACACGGTCTGG
60.923
66.667
4.41
0.00
32.47
3.86
2
3
2.207229
TCAGGGTGGACACGGTCTG
61.207
63.158
10.62
10.62
32.47
3.51
3
4
2.200370
TCAGGGTGGACACGGTCT
59.800
61.111
4.41
0.00
32.47
3.85
4
5
2.342648
GTCAGGGTGGACACGGTC
59.657
66.667
0.00
0.00
37.73
4.79
5
6
3.239253
GGTCAGGGTGGACACGGT
61.239
66.667
0.00
0.00
39.59
4.83
6
7
4.016706
GGGTCAGGGTGGACACGG
62.017
72.222
0.00
0.00
39.59
4.94
7
8
2.521958
GATGGGTCAGGGTGGACACG
62.522
65.000
0.00
0.00
44.26
4.49
8
9
1.299976
GATGGGTCAGGGTGGACAC
59.700
63.158
0.00
0.00
41.65
3.67
9
10
1.151921
TGATGGGTCAGGGTGGACA
60.152
57.895
0.00
0.00
39.59
4.02
10
11
1.604378
CTGATGGGTCAGGGTGGAC
59.396
63.158
0.00
0.00
46.56
4.02
11
12
4.152248
CTGATGGGTCAGGGTGGA
57.848
61.111
0.00
0.00
46.56
4.02
17
18
6.425776
CATGAACATGAGTCTGATGGGTCAG
61.426
48.000
8.89
0.00
45.36
3.51
18
19
2.905736
TGAACATGAGTCTGATGGGTCA
59.094
45.455
0.00
4.40
0.00
4.02
19
20
3.616956
TGAACATGAGTCTGATGGGTC
57.383
47.619
0.00
1.96
0.00
4.46
20
21
3.882444
CATGAACATGAGTCTGATGGGT
58.118
45.455
8.89
0.00
41.20
4.51
60
61
3.280295
TCACCCGAGAGAGAATGAGTAC
58.720
50.000
0.00
0.00
0.00
2.73
72
73
2.764128
GGGCAGGATCACCCGAGA
60.764
66.667
2.25
0.00
40.87
4.04
97
98
4.457603
TCGACAAACCCTTGGTGATTATTG
59.542
41.667
0.00
0.00
35.34
1.90
109
110
0.912487
TATGGGCCTCGACAAACCCT
60.912
55.000
4.53
0.00
43.25
4.34
114
115
0.758734
CATCCTATGGGCCTCGACAA
59.241
55.000
4.53
0.00
0.00
3.18
127
128
2.168458
TGAACCGTCATCCCATCCTA
57.832
50.000
0.00
0.00
0.00
2.94
137
138
2.198827
ATCATGCCTTTGAACCGTCA
57.801
45.000
0.00
0.00
0.00
4.35
140
141
2.763249
GCTATCATGCCTTTGAACCG
57.237
50.000
0.00
0.00
0.00
4.44
156
157
1.405526
GCCTCACGAACATTCAGGCTA
60.406
52.381
12.13
0.00
45.40
3.93
157
158
0.674895
GCCTCACGAACATTCAGGCT
60.675
55.000
12.13
0.00
45.40
4.58
160
161
1.728971
GTCTGCCTCACGAACATTCAG
59.271
52.381
0.00
0.00
0.00
3.02
170
171
1.369625
CATTAACCGGTCTGCCTCAC
58.630
55.000
8.04
0.00
0.00
3.51
171
172
0.392461
GCATTAACCGGTCTGCCTCA
60.392
55.000
20.37
0.00
0.00
3.86
172
173
2.394604
GCATTAACCGGTCTGCCTC
58.605
57.895
20.37
2.04
0.00
4.70
173
174
4.637771
GCATTAACCGGTCTGCCT
57.362
55.556
20.37
3.42
0.00
4.75
174
175
3.509659
GGCATTAACCGGTCTGCC
58.490
61.111
29.15
29.15
46.54
4.85
182
183
1.304630
AACCCCACCGGCATTAACC
60.305
57.895
0.00
0.00
33.26
2.85
198
199
1.141019
TCGCCGTATCAGGAGCAAC
59.859
57.895
0.00
0.00
0.00
4.17
206
207
5.392703
GGAGTATGATTATGTCGCCGTATCA
60.393
44.000
0.00
0.00
0.00
2.15
210
211
2.029290
GGGAGTATGATTATGTCGCCGT
60.029
50.000
0.00
0.00
0.00
5.68
215
216
4.957296
ACAACGGGGAGTATGATTATGTC
58.043
43.478
0.00
0.00
0.00
3.06
245
246
4.019501
ACTCCGAGACTCACCTAACTAGAA
60.020
45.833
1.33
0.00
0.00
2.10
251
252
1.002888
ACGACTCCGAGACTCACCTAA
59.997
52.381
1.33
0.00
39.50
2.69
256
257
1.299562
GCTCACGACTCCGAGACTCA
61.300
60.000
1.33
0.00
39.50
3.41
292
293
3.106986
ATTGATCCCCTCGGTGGCG
62.107
63.158
0.00
0.00
0.00
5.69
313
314
2.435586
CACTCAAGAGCCTGGCCG
60.436
66.667
16.57
1.57
0.00
6.13
329
330
2.910479
ACTGTCGACTCGCCCACA
60.910
61.111
17.92
0.00
0.00
4.17
335
336
0.664466
ACATGCACACTGTCGACTCG
60.664
55.000
17.92
10.33
0.00
4.18
355
356
1.165907
TGTCGAAAGGTGCAGCTTGG
61.166
55.000
30.27
23.73
0.00
3.61
356
357
0.877071
ATGTCGAAAGGTGCAGCTTG
59.123
50.000
30.27
19.11
0.00
4.01
358
359
0.957395
CCATGTCGAAAGGTGCAGCT
60.957
55.000
13.85
13.85
0.00
4.24
370
371
3.359194
CTCAAGGAGCTCCATGTCG
57.641
57.895
33.90
21.85
36.22
4.35
385
386
0.035152
CACCTATTGCCCAGTGCTCA
60.035
55.000
0.00
0.00
42.00
4.26
386
387
2.785868
CACCTATTGCCCAGTGCTC
58.214
57.895
0.00
0.00
42.00
4.26
404
405
0.392327
GCTTCTTGGAGGGTCTCTGC
60.392
60.000
0.00
0.00
0.00
4.26
406
407
1.261238
CGGCTTCTTGGAGGGTCTCT
61.261
60.000
0.00
0.00
0.00
3.10
418
419
1.002430
TCAACAGATTGCTCGGCTTCT
59.998
47.619
0.00
0.00
35.63
2.85
427
428
3.553511
CCTCGTCATAGTCAACAGATTGC
59.446
47.826
0.00
0.00
35.63
3.56
428
429
3.553511
GCCTCGTCATAGTCAACAGATTG
59.446
47.826
0.00
0.00
37.14
2.67
429
430
3.735208
CGCCTCGTCATAGTCAACAGATT
60.735
47.826
0.00
0.00
0.00
2.40
430
431
2.223595
CGCCTCGTCATAGTCAACAGAT
60.224
50.000
0.00
0.00
0.00
2.90
431
432
1.132453
CGCCTCGTCATAGTCAACAGA
59.868
52.381
0.00
0.00
0.00
3.41
432
433
1.550065
CGCCTCGTCATAGTCAACAG
58.450
55.000
0.00
0.00
0.00
3.16
433
434
0.457853
GCGCCTCGTCATAGTCAACA
60.458
55.000
0.00
0.00
0.00
3.33
434
435
0.457853
TGCGCCTCGTCATAGTCAAC
60.458
55.000
4.18
0.00
0.00
3.18
435
436
0.179137
CTGCGCCTCGTCATAGTCAA
60.179
55.000
4.18
0.00
0.00
3.18
436
437
1.433471
CTGCGCCTCGTCATAGTCA
59.567
57.895
4.18
0.00
0.00
3.41
437
438
1.946650
GCTGCGCCTCGTCATAGTC
60.947
63.158
4.18
0.00
0.00
2.59
438
439
2.105128
GCTGCGCCTCGTCATAGT
59.895
61.111
4.18
0.00
0.00
2.12
439
440
3.026879
CGCTGCGCCTCGTCATAG
61.027
66.667
9.88
0.00
0.00
2.23
440
441
3.822192
ACGCTGCGCCTCGTCATA
61.822
61.111
23.51
0.00
33.09
2.15
469
470
2.257286
CTGCATTGCCGGCTACACAC
62.257
60.000
29.70
12.64
0.00
3.82
473
474
2.699768
TTGCTGCATTGCCGGCTAC
61.700
57.895
29.70
14.53
0.00
3.58
475
476
4.060038
GTTGCTGCATTGCCGGCT
62.060
61.111
29.70
4.80
0.00
5.52
477
478
4.440127
GGGTTGCTGCATTGCCGG
62.440
66.667
1.84
0.00
0.00
6.13
478
479
2.934570
AAGGGTTGCTGCATTGCCG
61.935
57.895
1.84
0.16
0.00
5.69
479
480
1.375013
CAAGGGTTGCTGCATTGCC
60.375
57.895
1.84
6.52
0.00
4.52
480
481
1.375013
CCAAGGGTTGCTGCATTGC
60.375
57.895
1.84
0.46
0.00
3.56
481
482
0.320073
CACCAAGGGTTGCTGCATTG
60.320
55.000
1.84
4.88
31.02
2.82
482
483
1.474332
CCACCAAGGGTTGCTGCATT
61.474
55.000
1.84
0.00
31.02
3.56
483
484
1.909781
CCACCAAGGGTTGCTGCAT
60.910
57.895
1.84
0.00
31.02
3.96
484
485
2.521465
CCACCAAGGGTTGCTGCA
60.521
61.111
0.00
0.00
31.02
4.41
485
486
3.994853
GCCACCAAGGGTTGCTGC
61.995
66.667
4.37
0.00
40.60
5.25
486
487
3.305516
GGCCACCAAGGGTTGCTG
61.306
66.667
10.76
0.00
42.92
4.41
487
488
2.887738
TTTGGCCACCAAGGGTTGCT
62.888
55.000
3.88
0.00
44.84
3.91
488
489
1.767654
ATTTGGCCACCAAGGGTTGC
61.768
55.000
3.88
3.04
44.84
4.17
489
490
0.321346
GATTTGGCCACCAAGGGTTG
59.679
55.000
3.88
0.00
44.84
3.77
490
491
0.835971
GGATTTGGCCACCAAGGGTT
60.836
55.000
3.88
0.00
44.84
4.11
491
492
1.229177
GGATTTGGCCACCAAGGGT
60.229
57.895
3.88
0.00
44.84
4.34
492
493
2.350458
CGGATTTGGCCACCAAGGG
61.350
63.158
3.88
0.00
44.84
3.95
493
494
2.350458
CCGGATTTGGCCACCAAGG
61.350
63.158
3.88
1.29
44.84
3.61
494
495
3.287445
CCGGATTTGGCCACCAAG
58.713
61.111
3.88
0.00
44.84
3.61
506
507
1.515954
CCGTTACACTGAGCCGGAT
59.484
57.895
5.05
0.00
41.08
4.18
526
527
0.884704
ACCACATGTGTCGACCTTGC
60.885
55.000
23.79
1.36
0.00
4.01
528
529
1.542547
GGAACCACATGTGTCGACCTT
60.543
52.381
23.79
5.62
0.00
3.50
567
568
2.758327
AGATCCACGCCGCCTACA
60.758
61.111
0.00
0.00
0.00
2.74
615
616
4.832608
GACCGCCGTGGATCCACC
62.833
72.222
34.05
22.06
43.49
4.61
641
642
2.107141
GGGATGGACTCGCCGAAG
59.893
66.667
0.00
0.00
40.66
3.79
642
643
3.833645
CGGGATGGACTCGCCGAA
61.834
66.667
0.00
0.00
38.97
4.30
644
645
3.774959
CTTCGGGATGGACTCGCCG
62.775
68.421
0.00
0.00
42.91
6.46
645
646
2.107141
CTTCGGGATGGACTCGCC
59.893
66.667
0.00
0.00
42.91
5.54
646
647
1.389609
TACCTTCGGGATGGACTCGC
61.390
60.000
7.53
0.00
42.91
5.03
664
675
0.249031
CCTGATGCGCTGACGTGATA
60.249
55.000
9.73
0.00
42.83
2.15
674
685
2.659897
CCGCTCTACCTGATGCGC
60.660
66.667
0.00
0.00
45.97
6.09
686
697
1.650912
CATACAATGCCAGCCGCTC
59.349
57.895
0.00
0.00
38.78
5.03
687
698
1.825191
CCATACAATGCCAGCCGCT
60.825
57.895
0.00
0.00
38.78
5.52
704
715
1.067582
CGACCTATCCGGCTCAACC
59.932
63.158
0.00
0.00
35.61
3.77
705
716
1.067582
CCGACCTATCCGGCTCAAC
59.932
63.158
0.00
0.00
40.54
3.18
706
717
3.533720
CCGACCTATCCGGCTCAA
58.466
61.111
0.00
0.00
40.54
3.02
712
725
2.025727
GTCACGCCGACCTATCCG
59.974
66.667
0.00
0.00
38.85
4.18
717
730
2.359107
TCTACGTCACGCCGACCT
60.359
61.111
0.00
0.00
42.07
3.85
728
741
2.564975
CGTCCGGTTGCTCTACGT
59.435
61.111
0.00
0.00
0.00
3.57
736
749
1.956629
ATAGTCCAGGCGTCCGGTTG
61.957
60.000
0.00
0.00
0.00
3.77
791
804
8.887036
AAAAAGGAAGTTGTAGCCTATTTTTG
57.113
30.769
0.00
0.00
0.00
2.44
826
872
4.141733
TGCTATTGGACGGATTTCTCATGA
60.142
41.667
0.00
0.00
0.00
3.07
827
873
4.129380
TGCTATTGGACGGATTTCTCATG
58.871
43.478
0.00
0.00
0.00
3.07
837
925
1.715585
CGTGCTTGCTATTGGACGG
59.284
57.895
0.00
0.00
42.67
4.79
870
958
2.244695
TCGGTCTCCTCTGCTACAAAA
58.755
47.619
0.00
0.00
0.00
2.44
872
960
2.025155
GATCGGTCTCCTCTGCTACAA
58.975
52.381
0.00
0.00
0.00
2.41
914
2472
8.010540
CGATCGGTTAGATATAGATAATCGGTG
58.989
40.741
7.38
1.47
40.26
4.94
916
2474
7.519843
CCGATCGGTTAGATATAGATAATCGG
58.480
42.308
26.35
0.00
43.84
4.18
917
2475
7.519843
CCCGATCGGTTAGATATAGATAATCG
58.480
42.308
31.22
6.68
40.26
3.34
918
2476
7.040617
TGCCCGATCGGTTAGATATAGATAATC
60.041
40.741
31.22
1.83
40.26
1.75
919
2477
6.776116
TGCCCGATCGGTTAGATATAGATAAT
59.224
38.462
31.22
0.00
40.26
1.28
921
2479
5.687780
TGCCCGATCGGTTAGATATAGATA
58.312
41.667
31.22
4.32
40.26
1.98
922
2480
4.533815
TGCCCGATCGGTTAGATATAGAT
58.466
43.478
31.22
0.00
40.26
1.98
923
2481
3.945921
CTGCCCGATCGGTTAGATATAGA
59.054
47.826
31.22
3.06
40.26
1.98
924
2482
3.945921
TCTGCCCGATCGGTTAGATATAG
59.054
47.826
31.22
14.39
40.26
1.31
925
2483
3.945921
CTCTGCCCGATCGGTTAGATATA
59.054
47.826
31.22
12.24
40.26
0.86
926
2484
2.755655
CTCTGCCCGATCGGTTAGATAT
59.244
50.000
31.22
0.00
40.26
1.63
927
2485
2.160205
CTCTGCCCGATCGGTTAGATA
58.840
52.381
31.22
13.18
40.26
1.98
928
2486
0.962489
CTCTGCCCGATCGGTTAGAT
59.038
55.000
31.22
0.00
43.51
1.98
929
2487
1.107538
CCTCTGCCCGATCGGTTAGA
61.108
60.000
31.22
28.37
0.00
2.10
930
2488
1.107538
TCCTCTGCCCGATCGGTTAG
61.108
60.000
31.22
26.15
0.00
2.34
931
2489
1.076559
TCCTCTGCCCGATCGGTTA
60.077
57.895
31.22
18.76
0.00
2.85
932
2490
2.363795
TCCTCTGCCCGATCGGTT
60.364
61.111
31.22
0.00
0.00
4.44
933
2491
2.835431
CTCCTCTGCCCGATCGGT
60.835
66.667
31.22
0.00
0.00
4.69
934
2492
4.292178
GCTCCTCTGCCCGATCGG
62.292
72.222
27.65
27.65
0.00
4.18
935
2493
4.292178
GGCTCCTCTGCCCGATCG
62.292
72.222
8.51
8.51
46.82
3.69
942
2500
2.128771
TAATTGGTTGGCTCCTCTGC
57.871
50.000
0.00
0.00
0.00
4.26
943
2501
6.966534
ATAAATAATTGGTTGGCTCCTCTG
57.033
37.500
0.00
0.00
0.00
3.35
944
2502
8.673251
AGATATAAATAATTGGTTGGCTCCTCT
58.327
33.333
0.00
0.00
0.00
3.69
945
2503
8.870075
AGATATAAATAATTGGTTGGCTCCTC
57.130
34.615
0.00
0.00
0.00
3.71
961
2519
9.587772
CCAGAATCGAATCGGTTAGATATAAAT
57.412
33.333
0.00
0.00
38.98
1.40
1005
2564
2.441532
TCGAGATGGACCCCCGAC
60.442
66.667
0.00
0.00
34.29
4.79
1129
2699
2.260434
GCAGACGGCGTGGAAGTA
59.740
61.111
21.19
0.00
0.00
2.24
1159
2729
0.667487
ATCGTTGCCTCGTGTGAGTG
60.667
55.000
0.00
0.00
40.85
3.51
1171
2741
4.505217
CGCTGCCGTCATCGTTGC
62.505
66.667
0.00
0.00
35.01
4.17
1316
2889
2.124570
CCAGCCAGTTCATCCCCG
60.125
66.667
0.00
0.00
0.00
5.73
1391
2964
1.062810
ACAGAGGGTCATAGAGGGTCC
60.063
57.143
0.00
0.00
0.00
4.46
1446
3019
1.725169
CCCCCAACTGGAACCCTTGA
61.725
60.000
0.00
0.00
37.39
3.02
1488
3061
1.477553
AAAGGATGGTACCGTCGCTA
58.522
50.000
24.62
0.00
33.03
4.26
1533
3830
3.172050
CCTGAACTCAGACACGTATTCG
58.828
50.000
8.33
0.00
46.59
3.34
1556
3853
2.031012
CAGGACACAAGAGCGCCA
59.969
61.111
2.29
0.00
0.00
5.69
1594
3891
5.533112
TGTTTCCTCTAGATTCCTCTGGAT
58.467
41.667
0.00
0.00
38.22
3.41
1653
3950
5.263599
TCATTCACAGCCACAAGGATATTT
58.736
37.500
0.00
0.00
36.89
1.40
1668
3965
5.567423
CGCATACCAGAGGATATCATTCACA
60.567
44.000
4.83
0.00
0.00
3.58
1716
4013
3.391049
GACCAGTACGTCTTCTTTGCTT
58.609
45.455
0.00
0.00
0.00
3.91
1838
4135
1.006832
CTGCTTCCCACGGTAATTCG
58.993
55.000
0.00
0.00
0.00
3.34
2076
4373
2.259204
CGTTCAGGCGACGGGTAA
59.741
61.111
0.00
0.00
36.90
2.85
2179
4476
2.452600
TGGGGGATTGGAGTAATTGC
57.547
50.000
0.00
0.00
0.00
3.56
2240
8169
8.440771
CCCTAAAACAAGGACCATAATATCTCT
58.559
37.037
0.00
0.00
39.15
3.10
2245
8174
7.034967
ACACCCTAAAACAAGGACCATAATA
57.965
36.000
0.00
0.00
39.15
0.98
2287
8216
0.610174
TGAGAACTCTTGGCGCTGAT
59.390
50.000
7.64
0.00
0.00
2.90
2318
8247
0.321653
CCTCCCGTGCTTGCTAAACT
60.322
55.000
0.00
0.00
0.00
2.66
2331
8260
2.722201
GGCACTAGACACCCTCCCG
61.722
68.421
0.00
0.00
0.00
5.14
2409
8338
1.277739
CCGACATGCATGCATCGTC
59.722
57.895
31.78
31.78
33.90
4.20
2437
8366
3.041940
CCCGTCGAGTGTGGCAAC
61.042
66.667
0.00
0.00
0.00
4.17
2451
8380
3.016736
ACATCCATCTAACAAAAGCCCG
58.983
45.455
0.00
0.00
0.00
6.13
2614
8543
8.540388
AGCTAAAGTGTCTCACTAAATATCCAA
58.460
33.333
2.80
0.00
44.62
3.53
2645
8574
2.230660
GGGGCCAGATAATTACACTGC
58.769
52.381
4.39
9.75
0.00
4.40
2696
8625
0.772384
TTTTGGCGGGGACTTTAGGA
59.228
50.000
0.00
0.00
0.00
2.94
2802
8750
3.709633
TGCGAGGCCAGCATGACT
61.710
61.111
20.04
0.00
39.69
3.41
2818
8766
2.731451
CGGCGTCATTGATACTATGGTG
59.269
50.000
0.00
0.00
0.00
4.17
2819
8767
2.364324
ACGGCGTCATTGATACTATGGT
59.636
45.455
6.77
0.00
0.00
3.55
2835
8783
2.125512
AAGCTGCTAAGGACGGCG
60.126
61.111
4.80
4.80
44.36
6.46
2839
8787
0.036875
ACCACCAAGCTGCTAAGGAC
59.963
55.000
23.02
0.00
0.00
3.85
2855
8803
0.472925
TACCAAGCAGAGTGGGACCA
60.473
55.000
0.00
0.00
40.75
4.02
2901
8849
2.948315
GAGGTTCAAGATCCCATTGAGC
59.052
50.000
2.58
2.58
37.91
4.26
2939
8887
0.533531
CGCTTCTATCATGCCTGGCA
60.534
55.000
25.65
25.65
44.86
4.92
2973
8921
0.673985
AGATTGCTATCGCTACCGCA
59.326
50.000
2.42
0.00
35.85
5.69
3046
8994
0.846693
GTTGATGGCCCTGGAGGTAT
59.153
55.000
0.00
0.00
38.26
2.73
3088
9036
4.320275
CGAGATACTAGCGGCTGTTGATTA
60.320
45.833
13.86
0.00
0.00
1.75
3090
9038
2.030717
CGAGATACTAGCGGCTGTTGAT
60.031
50.000
13.86
0.34
0.00
2.57
3134
9082
2.905415
ATTGGCATCTTCCCTGAACA
57.095
45.000
0.00
0.00
0.00
3.18
3216
9164
1.812571
GATGATGCGTTTGACCCAACT
59.187
47.619
0.00
0.00
0.00
3.16
3250
9198
6.263392
TGGGTAAAGAACATTGTTGATTTCGA
59.737
34.615
6.80
0.00
0.00
3.71
3283
9231
4.523083
TGCTTGACATTAGGGGTATGTTC
58.477
43.478
0.00
0.00
36.41
3.18
3307
9255
4.394795
CGAATGACGTGGAGAAAATTGTC
58.605
43.478
0.00
0.00
37.22
3.18
3310
9258
2.747446
CCCGAATGACGTGGAGAAAATT
59.253
45.455
0.00
0.00
40.78
1.82
3313
9261
0.036765
CCCCGAATGACGTGGAGAAA
60.037
55.000
0.00
0.00
41.87
2.52
3322
9270
3.186047
CGCACGTCCCCGAATGAC
61.186
66.667
0.00
0.00
37.88
3.06
3325
9273
3.524648
AACACGCACGTCCCCGAAT
62.525
57.895
6.77
0.00
37.88
3.34
3349
9433
4.153958
CGAGCCTATGTCTGATGACTAC
57.846
50.000
0.00
0.00
43.29
2.73
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.