Multiple sequence alignment - TraesCS3D01G545200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G545200 chr3D 100.000 3503 0 0 1 3503 614693989 614690487 0.000000e+00 6469
1 TraesCS3D01G545200 chr3D 76.711 1052 205 25 1074 2093 511060728 511061771 1.840000e-152 549
2 TraesCS3D01G545200 chr3D 75.839 745 148 24 1667 2392 510647378 510648109 2.000000e-92 350
3 TraesCS3D01G545200 chr3D 81.132 159 23 6 2188 2346 511272596 511272747 1.710000e-23 121
4 TraesCS3D01G545200 chrUn 96.701 1667 43 3 900 2554 304831052 304832718 0.000000e+00 2763
5 TraesCS3D01G545200 chrUn 92.376 905 48 8 1 896 38371628 38372520 0.000000e+00 1269
6 TraesCS3D01G545200 chrUn 92.172 907 47 11 1 896 37788733 37789626 0.000000e+00 1260
7 TraesCS3D01G545200 chrUn 96.488 541 14 2 2847 3382 38383601 38384141 0.000000e+00 889
8 TraesCS3D01G545200 chrUn 80.107 563 94 16 3 554 379377125 379376570 1.510000e-108 403
9 TraesCS3D01G545200 chrUn 98.268 231 2 1 2556 2784 475768756 475768526 1.510000e-108 403
10 TraesCS3D01G545200 chrUn 97.561 123 3 0 3381 3503 38384255 38384377 9.850000e-51 211
11 TraesCS3D01G545200 chr1A 84.919 557 82 2 1074 1629 13805359 13805914 2.360000e-156 562
12 TraesCS3D01G545200 chr1A 80.287 558 95 13 1 550 535110559 535110009 1.170000e-109 407
13 TraesCS3D01G545200 chr1B 85.192 547 78 2 1083 1629 17537835 17537292 3.050000e-155 558
14 TraesCS3D01G545200 chr4A 86.058 416 54 3 1074 1487 728535055 728535468 8.920000e-121 444
15 TraesCS3D01G545200 chr4D 80.496 564 94 13 1 554 177463789 177464346 5.410000e-113 418
16 TraesCS3D01G545200 chr6B 80.570 561 91 13 1 554 520426009 520426558 1.950000e-112 416
17 TraesCS3D01G545200 chr6B 79.787 564 88 19 1 547 142955914 142955360 1.530000e-103 387
18 TraesCS3D01G545200 chr1D 80.316 569 94 17 1 557 116013448 116012886 7.000000e-112 414
19 TraesCS3D01G545200 chr2A 80.107 563 94 15 3 554 44752779 44753334 1.510000e-108 403
20 TraesCS3D01G545200 chr2D 79.537 562 94 14 1 554 418506944 418507492 7.100000e-102 381
21 TraesCS3D01G545200 chr2B 79.592 539 98 9 1 531 739536032 739535498 3.300000e-100 375
22 TraesCS3D01G545200 chr7B 81.495 281 47 5 561 838 35268929 35268651 3.520000e-55 226
23 TraesCS3D01G545200 chr3B 90.323 124 12 0 2267 2390 672712107 672712230 2.800000e-36 163
24 TraesCS3D01G545200 chr3B 82.609 184 25 5 2188 2371 672609389 672609565 4.680000e-34 156


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G545200 chr3D 614690487 614693989 3502 True 6469 6469 100.0000 1 3503 1 chr3D.!!$R1 3502
1 TraesCS3D01G545200 chr3D 511060728 511061771 1043 False 549 549 76.7110 1074 2093 1 chr3D.!!$F2 1019
2 TraesCS3D01G545200 chr3D 510647378 510648109 731 False 350 350 75.8390 1667 2392 1 chr3D.!!$F1 725
3 TraesCS3D01G545200 chrUn 304831052 304832718 1666 False 2763 2763 96.7010 900 2554 1 chrUn.!!$F3 1654
4 TraesCS3D01G545200 chrUn 38371628 38372520 892 False 1269 1269 92.3760 1 896 1 chrUn.!!$F2 895
5 TraesCS3D01G545200 chrUn 37788733 37789626 893 False 1260 1260 92.1720 1 896 1 chrUn.!!$F1 895
6 TraesCS3D01G545200 chrUn 38383601 38384377 776 False 550 889 97.0245 2847 3503 2 chrUn.!!$F4 656
7 TraesCS3D01G545200 chrUn 379376570 379377125 555 True 403 403 80.1070 3 554 1 chrUn.!!$R1 551
8 TraesCS3D01G545200 chr1A 13805359 13805914 555 False 562 562 84.9190 1074 1629 1 chr1A.!!$F1 555
9 TraesCS3D01G545200 chr1A 535110009 535110559 550 True 407 407 80.2870 1 550 1 chr1A.!!$R1 549
10 TraesCS3D01G545200 chr1B 17537292 17537835 543 True 558 558 85.1920 1083 1629 1 chr1B.!!$R1 546
11 TraesCS3D01G545200 chr4D 177463789 177464346 557 False 418 418 80.4960 1 554 1 chr4D.!!$F1 553
12 TraesCS3D01G545200 chr6B 520426009 520426558 549 False 416 416 80.5700 1 554 1 chr6B.!!$F1 553
13 TraesCS3D01G545200 chr6B 142955360 142955914 554 True 387 387 79.7870 1 547 1 chr6B.!!$R1 546
14 TraesCS3D01G545200 chr1D 116012886 116013448 562 True 414 414 80.3160 1 557 1 chr1D.!!$R1 556
15 TraesCS3D01G545200 chr2A 44752779 44753334 555 False 403 403 80.1070 3 554 1 chr2A.!!$F1 551
16 TraesCS3D01G545200 chr2D 418506944 418507492 548 False 381 381 79.5370 1 554 1 chr2D.!!$F1 553
17 TraesCS3D01G545200 chr2B 739535498 739536032 534 True 375 375 79.5920 1 531 1 chr2B.!!$R1 530

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
612 641 0.591170 ATTTTGCCAACGGACAGTCG 59.409 50.0 0.00 0.0 0.00 4.18 F
945 974 0.762418 TTGGATCAGAACCCACGTGT 59.238 50.0 15.65 0.0 31.11 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1904 1963 0.476611 AGAAGGTCTCCTGCCCCTTT 60.477 55.0 0.0 0.0 38.68 3.11 R
2734 2813 0.039074 CGACGTGCTCTTCCTGACTT 60.039 55.0 0.0 0.0 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 80 1.627879 CCATTGCCGATTGTTTTCCG 58.372 50.000 0.00 0.00 0.00 4.30
206 219 0.904865 TCAGACAAGCCAGGACGGAT 60.905 55.000 0.00 0.00 36.56 4.18
394 417 1.374947 CGGAACTTTGCCAGAGGGA 59.625 57.895 0.00 0.00 35.59 4.20
432 455 6.462207 GGAGAGCTTCTACATCAATCTTGCTA 60.462 42.308 0.00 0.00 0.00 3.49
546 575 6.536731 ACAATGTTCTCATCGATATGCTTC 57.463 37.500 0.00 0.00 32.56 3.86
557 586 4.744570 TCGATATGCTTCGAGTTCTGTTT 58.255 39.130 3.42 0.00 42.81 2.83
566 595 5.062308 GCTTCGAGTTCTGTTTATCGTTGAT 59.938 40.000 0.00 0.00 36.58 2.57
580 609 5.784750 ATCGTTGATGGTTATATGCATCG 57.215 39.130 0.19 0.00 0.00 3.84
588 617 4.373527 TGGTTATATGCATCGTGTACCAC 58.626 43.478 0.19 0.00 0.00 4.16
612 641 0.591170 ATTTTGCCAACGGACAGTCG 59.409 50.000 0.00 0.00 0.00 4.18
658 687 2.351738 GCCTGGTCACAATAGCAACAAC 60.352 50.000 0.00 0.00 0.00 3.32
675 704 3.705051 ACAACGAGAGATACCTACCCAA 58.295 45.455 0.00 0.00 0.00 4.12
690 719 5.655090 ACCTACCCAATTATGCTTACCAAAC 59.345 40.000 0.00 0.00 0.00 2.93
783 812 6.406692 TCTTCCAGTTATTTAGGGATCTCG 57.593 41.667 0.00 0.00 0.00 4.04
897 926 5.046910 GATGGATCGACACAAAACAATGT 57.953 39.130 0.00 0.00 0.00 2.71
898 927 4.909696 TGGATCGACACAAAACAATGTT 57.090 36.364 0.00 0.00 0.00 2.71
921 950 7.119116 TGTTTGTACGTGCATCTCAATTAATCT 59.881 33.333 7.30 0.00 0.00 2.40
922 951 8.600625 GTTTGTACGTGCATCTCAATTAATCTA 58.399 33.333 7.30 0.00 0.00 1.98
945 974 0.762418 TTGGATCAGAACCCACGTGT 59.238 50.000 15.65 0.00 31.11 4.49
952 981 3.162666 TCAGAACCCACGTGTTATCTCT 58.837 45.455 15.65 5.98 0.00 3.10
1002 1031 4.709886 TGTATGTAGCTAGCCTGAAACAGA 59.290 41.667 12.13 3.21 32.44 3.41
1004 1033 4.128925 TGTAGCTAGCCTGAAACAGATG 57.871 45.455 12.13 0.00 32.44 2.90
1018 1047 3.360249 ACAGATGACAAGCAAAGCAAC 57.640 42.857 0.00 0.00 0.00 4.17
1025 1054 1.615392 ACAAGCAAAGCAACCTCCATC 59.385 47.619 0.00 0.00 0.00 3.51
1059 1088 1.022735 GCAGAAGCACATCATGGGAG 58.977 55.000 0.00 0.00 41.58 4.30
1583 1627 2.665000 CACTCTGTGGGCGATGGT 59.335 61.111 0.00 0.00 0.00 3.55
1685 1741 1.469335 GGAGGTGGTTCGTGGAGACA 61.469 60.000 0.00 0.00 38.70 3.41
1838 1897 2.359850 GAGATGGCCACCAACGCA 60.360 61.111 8.16 0.00 36.95 5.24
2072 2131 4.254709 TGGCAGCTGAACCGCACT 62.255 61.111 20.43 0.00 0.00 4.40
2121 2180 0.683504 GGAGTTCCTAGACCGCTGGA 60.684 60.000 1.50 0.00 0.00 3.86
2392 2465 3.554692 CGAGTTCATGGACGCGGC 61.555 66.667 21.22 7.53 38.83 6.53
2415 2494 0.036010 CCTTCCACTTCCTGCGTGAT 60.036 55.000 0.00 0.00 34.35 3.06
2431 2510 2.266554 GTGATCACTCTTCTTCTGCGG 58.733 52.381 18.83 0.00 0.00 5.69
2485 2564 2.037772 TCTTCTTCAGTGGCAACTCCTC 59.962 50.000 0.00 0.00 32.98 3.71
2576 2655 8.547967 TTTTCAATAATAAGTCGCTCTTCTGT 57.452 30.769 0.00 0.00 37.56 3.41
2577 2656 8.547967 TTTCAATAATAAGTCGCTCTTCTGTT 57.452 30.769 0.00 0.00 37.56 3.16
2578 2657 8.547967 TTCAATAATAAGTCGCTCTTCTGTTT 57.452 30.769 0.00 0.00 37.56 2.83
2579 2658 8.186178 TCAATAATAAGTCGCTCTTCTGTTTC 57.814 34.615 0.00 0.00 37.56 2.78
2580 2659 7.817478 TCAATAATAAGTCGCTCTTCTGTTTCA 59.183 33.333 0.00 0.00 37.56 2.69
2581 2660 8.443160 CAATAATAAGTCGCTCTTCTGTTTCAA 58.557 33.333 0.00 0.00 37.56 2.69
2582 2661 6.861065 AATAAGTCGCTCTTCTGTTTCAAA 57.139 33.333 0.00 0.00 37.56 2.69
2583 2662 4.802876 AAGTCGCTCTTCTGTTTCAAAG 57.197 40.909 0.00 0.00 0.00 2.77
2584 2663 4.060038 AGTCGCTCTTCTGTTTCAAAGA 57.940 40.909 0.00 0.00 0.00 2.52
2585 2664 4.636249 AGTCGCTCTTCTGTTTCAAAGAT 58.364 39.130 0.00 0.00 31.45 2.40
2586 2665 5.784177 AGTCGCTCTTCTGTTTCAAAGATA 58.216 37.500 0.00 0.00 31.45 1.98
2587 2666 6.223852 AGTCGCTCTTCTGTTTCAAAGATAA 58.776 36.000 0.00 0.00 31.45 1.75
2588 2667 6.706270 AGTCGCTCTTCTGTTTCAAAGATAAA 59.294 34.615 0.00 0.00 31.45 1.40
2589 2668 7.389053 AGTCGCTCTTCTGTTTCAAAGATAAAT 59.611 33.333 0.00 0.00 31.45 1.40
2590 2669 8.017946 GTCGCTCTTCTGTTTCAAAGATAAATT 58.982 33.333 0.00 0.00 31.45 1.82
2591 2670 8.230486 TCGCTCTTCTGTTTCAAAGATAAATTC 58.770 33.333 0.00 0.00 31.45 2.17
2592 2671 7.483059 CGCTCTTCTGTTTCAAAGATAAATTCC 59.517 37.037 0.00 0.00 31.45 3.01
2593 2672 8.518702 GCTCTTCTGTTTCAAAGATAAATTCCT 58.481 33.333 0.00 0.00 31.45 3.36
2626 2705 2.682155 TTTTTGCTTCGCCTTTTGGT 57.318 40.000 0.00 0.00 42.99 3.67
2627 2706 2.682155 TTTTGCTTCGCCTTTTGGTT 57.318 40.000 0.00 0.00 42.99 3.67
2628 2707 2.682155 TTTGCTTCGCCTTTTGGTTT 57.318 40.000 0.00 0.00 42.99 3.27
2629 2708 3.802948 TTTGCTTCGCCTTTTGGTTTA 57.197 38.095 0.00 0.00 42.99 2.01
2630 2709 4.329462 TTTGCTTCGCCTTTTGGTTTAT 57.671 36.364 0.00 0.00 42.99 1.40
2631 2710 5.455056 TTTGCTTCGCCTTTTGGTTTATA 57.545 34.783 0.00 0.00 42.99 0.98
2632 2711 4.428615 TGCTTCGCCTTTTGGTTTATAC 57.571 40.909 0.00 0.00 42.99 1.47
2633 2712 3.191791 TGCTTCGCCTTTTGGTTTATACC 59.808 43.478 0.00 0.00 45.26 2.73
2667 2746 9.985730 AACAATATTGATTTATATGCCACAAGG 57.014 29.630 22.16 0.00 38.23 3.61
2668 2747 9.146586 ACAATATTGATTTATATGCCACAAGGT 57.853 29.630 22.16 0.00 37.19 3.50
2669 2748 9.414295 CAATATTGATTTATATGCCACAAGGTG 57.586 33.333 10.04 0.00 37.19 4.00
2670 2749 8.938801 ATATTGATTTATATGCCACAAGGTGA 57.061 30.769 0.00 0.00 35.23 4.02
2671 2750 7.658525 ATTGATTTATATGCCACAAGGTGAA 57.341 32.000 0.00 0.00 35.23 3.18
2672 2751 6.698008 TGATTTATATGCCACAAGGTGAAG 57.302 37.500 0.00 0.00 35.23 3.02
2673 2752 6.422333 TGATTTATATGCCACAAGGTGAAGA 58.578 36.000 0.00 0.00 35.23 2.87
2674 2753 6.889177 TGATTTATATGCCACAAGGTGAAGAA 59.111 34.615 0.00 0.00 35.23 2.52
2675 2754 7.395772 TGATTTATATGCCACAAGGTGAAGAAA 59.604 33.333 0.00 0.00 35.23 2.52
2676 2755 7.531857 TTTATATGCCACAAGGTGAAGAAAA 57.468 32.000 0.00 0.00 35.23 2.29
2677 2756 7.531857 TTATATGCCACAAGGTGAAGAAAAA 57.468 32.000 0.00 0.00 35.23 1.94
2678 2757 4.961438 ATGCCACAAGGTGAAGAAAAAT 57.039 36.364 0.00 0.00 35.23 1.82
2679 2758 4.320608 TGCCACAAGGTGAAGAAAAATC 57.679 40.909 0.00 0.00 35.23 2.17
2680 2759 3.069443 TGCCACAAGGTGAAGAAAAATCC 59.931 43.478 0.00 0.00 35.23 3.01
2681 2760 3.554960 GCCACAAGGTGAAGAAAAATCCC 60.555 47.826 0.00 0.00 35.23 3.85
2682 2761 3.006859 CCACAAGGTGAAGAAAAATCCCC 59.993 47.826 0.00 0.00 35.23 4.81
2683 2762 3.897505 CACAAGGTGAAGAAAAATCCCCT 59.102 43.478 0.00 0.00 35.23 4.79
2684 2763 5.076873 CACAAGGTGAAGAAAAATCCCCTA 58.923 41.667 0.00 0.00 35.23 3.53
2685 2764 5.716703 CACAAGGTGAAGAAAAATCCCCTAT 59.283 40.000 0.00 0.00 35.23 2.57
2686 2765 6.211384 CACAAGGTGAAGAAAAATCCCCTATT 59.789 38.462 0.00 0.00 35.23 1.73
2687 2766 6.787458 ACAAGGTGAAGAAAAATCCCCTATTT 59.213 34.615 0.00 0.00 39.56 1.40
2689 2768 7.244886 AGGTGAAGAAAAATCCCCTATTTTG 57.755 36.000 0.00 0.00 45.12 2.44
2690 2769 6.213397 AGGTGAAGAAAAATCCCCTATTTTGG 59.787 38.462 0.00 0.00 45.12 3.28
2691 2770 6.212589 GGTGAAGAAAAATCCCCTATTTTGGA 59.787 38.462 0.00 0.00 45.12 3.53
2692 2771 7.323420 GTGAAGAAAAATCCCCTATTTTGGAG 58.677 38.462 0.00 0.00 45.12 3.86
2693 2772 5.939764 AGAAAAATCCCCTATTTTGGAGC 57.060 39.130 0.00 0.00 45.12 4.70
2694 2773 5.341169 AGAAAAATCCCCTATTTTGGAGCA 58.659 37.500 0.00 0.00 45.12 4.26
2695 2774 5.784906 AGAAAAATCCCCTATTTTGGAGCAA 59.215 36.000 0.00 0.00 45.12 3.91
2696 2775 6.272090 AGAAAAATCCCCTATTTTGGAGCAAA 59.728 34.615 0.00 0.00 45.12 3.68
2697 2776 6.446909 AAAATCCCCTATTTTGGAGCAAAA 57.553 33.333 0.00 0.00 44.36 2.44
2698 2777 6.446909 AAATCCCCTATTTTGGAGCAAAAA 57.553 33.333 0.00 0.00 44.68 1.94
2699 2778 6.641161 AATCCCCTATTTTGGAGCAAAAAT 57.359 33.333 0.00 9.01 44.68 1.82
2700 2779 5.675684 TCCCCTATTTTGGAGCAAAAATC 57.324 39.130 7.72 0.00 44.68 2.17
2701 2780 4.469586 TCCCCTATTTTGGAGCAAAAATCC 59.530 41.667 7.72 0.00 44.68 3.01
2702 2781 4.384098 CCCCTATTTTGGAGCAAAAATCCC 60.384 45.833 7.72 0.00 44.68 3.85
2703 2782 4.224818 CCCTATTTTGGAGCAAAAATCCCA 59.775 41.667 7.72 0.00 44.68 4.37
2704 2783 5.104402 CCCTATTTTGGAGCAAAAATCCCAT 60.104 40.000 7.72 0.00 44.68 4.00
2705 2784 6.417258 CCTATTTTGGAGCAAAAATCCCATT 58.583 36.000 7.72 0.00 44.68 3.16
2706 2785 7.365473 CCCTATTTTGGAGCAAAAATCCCATTA 60.365 37.037 7.72 0.00 44.68 1.90
2707 2786 8.212995 CCTATTTTGGAGCAAAAATCCCATTAT 58.787 33.333 7.72 0.00 44.68 1.28
2708 2787 7.868906 ATTTTGGAGCAAAAATCCCATTATG 57.131 32.000 0.00 0.00 44.68 1.90
2709 2788 4.405116 TGGAGCAAAAATCCCATTATGC 57.595 40.909 0.00 0.00 35.86 3.14
2710 2789 3.134442 TGGAGCAAAAATCCCATTATGCC 59.866 43.478 0.00 0.00 36.46 4.40
2711 2790 3.389002 GGAGCAAAAATCCCATTATGCCT 59.611 43.478 0.00 0.00 36.46 4.75
2712 2791 4.502087 GGAGCAAAAATCCCATTATGCCTC 60.502 45.833 0.00 0.00 36.46 4.70
2713 2792 3.389002 AGCAAAAATCCCATTATGCCTCC 59.611 43.478 0.00 0.00 36.46 4.30
2714 2793 3.494924 GCAAAAATCCCATTATGCCTCCC 60.495 47.826 0.00 0.00 32.32 4.30
2715 2794 2.702270 AAATCCCATTATGCCTCCCC 57.298 50.000 0.00 0.00 0.00 4.81
2716 2795 1.852301 AATCCCATTATGCCTCCCCT 58.148 50.000 0.00 0.00 0.00 4.79
2717 2796 1.376649 ATCCCATTATGCCTCCCCTC 58.623 55.000 0.00 0.00 0.00 4.30
2718 2797 0.772124 TCCCATTATGCCTCCCCTCC 60.772 60.000 0.00 0.00 0.00 4.30
2719 2798 0.773700 CCCATTATGCCTCCCCTCCT 60.774 60.000 0.00 0.00 0.00 3.69
2720 2799 1.486943 CCCATTATGCCTCCCCTCCTA 60.487 57.143 0.00 0.00 0.00 2.94
2721 2800 1.912043 CCATTATGCCTCCCCTCCTAG 59.088 57.143 0.00 0.00 0.00 3.02
2722 2801 1.280421 CATTATGCCTCCCCTCCTAGC 59.720 57.143 0.00 0.00 0.00 3.42
2723 2802 0.832135 TTATGCCTCCCCTCCTAGCG 60.832 60.000 0.00 0.00 0.00 4.26
2726 2805 2.525381 CCTCCCCTCCTAGCGCAT 60.525 66.667 11.47 0.00 0.00 4.73
2727 2806 2.143419 CCTCCCCTCCTAGCGCATT 61.143 63.158 11.47 0.00 0.00 3.56
2728 2807 1.369321 CTCCCCTCCTAGCGCATTC 59.631 63.158 11.47 0.00 0.00 2.67
2729 2808 1.075226 TCCCCTCCTAGCGCATTCT 60.075 57.895 11.47 0.00 0.00 2.40
2730 2809 0.187606 TCCCCTCCTAGCGCATTCTA 59.812 55.000 11.47 0.00 0.00 2.10
2731 2810 1.203187 TCCCCTCCTAGCGCATTCTAT 60.203 52.381 11.47 0.00 0.00 1.98
2732 2811 2.042569 TCCCCTCCTAGCGCATTCTATA 59.957 50.000 11.47 0.00 0.00 1.31
2733 2812 3.034635 CCCCTCCTAGCGCATTCTATAT 58.965 50.000 11.47 0.00 0.00 0.86
2734 2813 4.079385 TCCCCTCCTAGCGCATTCTATATA 60.079 45.833 11.47 0.00 0.00 0.86
2735 2814 4.649674 CCCCTCCTAGCGCATTCTATATAA 59.350 45.833 11.47 0.00 0.00 0.98
2736 2815 5.221342 CCCCTCCTAGCGCATTCTATATAAG 60.221 48.000 11.47 0.00 0.00 1.73
2737 2816 5.361285 CCCTCCTAGCGCATTCTATATAAGT 59.639 44.000 11.47 0.00 0.00 2.24
2738 2817 6.460399 CCCTCCTAGCGCATTCTATATAAGTC 60.460 46.154 11.47 0.00 0.00 3.01
2739 2818 6.095580 CCTCCTAGCGCATTCTATATAAGTCA 59.904 42.308 11.47 0.00 0.00 3.41
2740 2819 7.089770 TCCTAGCGCATTCTATATAAGTCAG 57.910 40.000 11.47 0.00 0.00 3.51
2741 2820 6.095580 TCCTAGCGCATTCTATATAAGTCAGG 59.904 42.308 11.47 0.00 0.00 3.86
2742 2821 5.984695 AGCGCATTCTATATAAGTCAGGA 57.015 39.130 11.47 0.00 0.00 3.86
2743 2822 6.346477 AGCGCATTCTATATAAGTCAGGAA 57.654 37.500 11.47 0.00 0.00 3.36
2744 2823 6.393990 AGCGCATTCTATATAAGTCAGGAAG 58.606 40.000 11.47 0.00 0.00 3.46
2745 2824 6.209589 AGCGCATTCTATATAAGTCAGGAAGA 59.790 38.462 11.47 0.00 0.00 2.87
2746 2825 6.529829 GCGCATTCTATATAAGTCAGGAAGAG 59.470 42.308 0.30 0.00 0.00 2.85
2747 2826 6.529829 CGCATTCTATATAAGTCAGGAAGAGC 59.470 42.308 0.00 0.00 0.00 4.09
2748 2827 7.382110 GCATTCTATATAAGTCAGGAAGAGCA 58.618 38.462 0.00 0.00 0.00 4.26
2749 2828 7.330700 GCATTCTATATAAGTCAGGAAGAGCAC 59.669 40.741 0.00 0.00 0.00 4.40
2750 2829 6.561737 TCTATATAAGTCAGGAAGAGCACG 57.438 41.667 0.00 0.00 0.00 5.34
2751 2830 6.062749 TCTATATAAGTCAGGAAGAGCACGT 58.937 40.000 0.00 0.00 0.00 4.49
2752 2831 3.512033 ATAAGTCAGGAAGAGCACGTC 57.488 47.619 0.00 0.00 0.00 4.34
2753 2832 0.039074 AAGTCAGGAAGAGCACGTCG 60.039 55.000 0.00 0.00 0.00 5.12
2754 2833 1.444553 GTCAGGAAGAGCACGTCGG 60.445 63.158 0.00 0.00 0.00 4.79
2755 2834 2.125912 CAGGAAGAGCACGTCGGG 60.126 66.667 0.00 0.00 0.00 5.14
2756 2835 2.600769 AGGAAGAGCACGTCGGGT 60.601 61.111 0.00 0.00 0.00 5.28
2757 2836 2.207924 AGGAAGAGCACGTCGGGTT 61.208 57.895 0.00 0.00 0.00 4.11
2758 2837 2.027625 GGAAGAGCACGTCGGGTTG 61.028 63.158 0.00 0.00 0.00 3.77
2759 2838 1.006571 GAAGAGCACGTCGGGTTGA 60.007 57.895 0.00 0.00 0.00 3.18
2760 2839 1.006102 AAGAGCACGTCGGGTTGAG 60.006 57.895 0.00 0.00 0.00 3.02
2761 2840 2.432628 GAGCACGTCGGGTTGAGG 60.433 66.667 0.00 0.00 38.44 3.86
2762 2841 3.934391 GAGCACGTCGGGTTGAGGG 62.934 68.421 0.00 0.00 36.79 4.30
2763 2842 4.309950 GCACGTCGGGTTGAGGGT 62.310 66.667 0.00 0.00 36.79 4.34
2764 2843 2.424302 CACGTCGGGTTGAGGGTT 59.576 61.111 0.00 0.00 36.79 4.11
2765 2844 1.959226 CACGTCGGGTTGAGGGTTG 60.959 63.158 0.00 0.00 36.79 3.77
2766 2845 2.135581 ACGTCGGGTTGAGGGTTGA 61.136 57.895 0.00 0.00 36.79 3.18
2767 2846 1.070105 CGTCGGGTTGAGGGTTGAA 59.930 57.895 0.00 0.00 0.00 2.69
2768 2847 1.226030 CGTCGGGTTGAGGGTTGAAC 61.226 60.000 0.00 0.00 0.00 3.18
2769 2848 0.108019 GTCGGGTTGAGGGTTGAACT 59.892 55.000 0.00 0.00 0.00 3.01
2770 2849 0.395312 TCGGGTTGAGGGTTGAACTC 59.605 55.000 0.00 0.00 35.55 3.01
2771 2850 0.396811 CGGGTTGAGGGTTGAACTCT 59.603 55.000 0.00 0.00 35.98 3.24
2772 2851 1.608283 CGGGTTGAGGGTTGAACTCTC 60.608 57.143 18.05 18.05 45.88 3.20
2773 2852 1.700186 GGGTTGAGGGTTGAACTCTCT 59.300 52.381 24.20 6.44 45.87 3.10
2774 2853 2.106684 GGGTTGAGGGTTGAACTCTCTT 59.893 50.000 24.20 0.00 45.87 2.85
2775 2854 3.326880 GGGTTGAGGGTTGAACTCTCTTA 59.673 47.826 24.20 10.96 45.87 2.10
2776 2855 4.316645 GGTTGAGGGTTGAACTCTCTTAC 58.683 47.826 24.20 20.19 45.87 2.34
2777 2856 4.202326 GGTTGAGGGTTGAACTCTCTTACA 60.202 45.833 24.20 3.54 45.87 2.41
2778 2857 5.513267 GGTTGAGGGTTGAACTCTCTTACAT 60.513 44.000 24.20 0.00 45.87 2.29
2779 2858 5.825593 TGAGGGTTGAACTCTCTTACATT 57.174 39.130 24.20 0.00 45.87 2.71
2780 2859 5.551233 TGAGGGTTGAACTCTCTTACATTG 58.449 41.667 24.20 0.00 45.87 2.82
2781 2860 5.071788 TGAGGGTTGAACTCTCTTACATTGT 59.928 40.000 24.20 0.00 45.87 2.71
2782 2861 6.269077 TGAGGGTTGAACTCTCTTACATTGTA 59.731 38.462 24.20 0.00 45.87 2.41
2783 2862 6.465084 AGGGTTGAACTCTCTTACATTGTAC 58.535 40.000 0.00 0.00 0.00 2.90
2784 2863 6.042781 AGGGTTGAACTCTCTTACATTGTACA 59.957 38.462 0.00 0.00 0.00 2.90
2785 2864 6.879458 GGGTTGAACTCTCTTACATTGTACAT 59.121 38.462 0.00 0.00 0.00 2.29
2786 2865 8.038944 GGGTTGAACTCTCTTACATTGTACATA 58.961 37.037 0.00 0.00 0.00 2.29
2787 2866 8.870879 GGTTGAACTCTCTTACATTGTACATAC 58.129 37.037 0.00 0.00 0.00 2.39
2788 2867 8.870879 GTTGAACTCTCTTACATTGTACATACC 58.129 37.037 0.00 0.00 0.00 2.73
2789 2868 8.362464 TGAACTCTCTTACATTGTACATACCT 57.638 34.615 0.00 0.00 0.00 3.08
2790 2869 9.470399 TGAACTCTCTTACATTGTACATACCTA 57.530 33.333 0.00 0.00 0.00 3.08
2791 2870 9.733219 GAACTCTCTTACATTGTACATACCTAC 57.267 37.037 0.00 0.00 0.00 3.18
2792 2871 8.818622 ACTCTCTTACATTGTACATACCTACA 57.181 34.615 0.00 0.00 0.00 2.74
2793 2872 8.684520 ACTCTCTTACATTGTACATACCTACAC 58.315 37.037 0.00 0.00 0.00 2.90
2794 2873 8.004087 TCTCTTACATTGTACATACCTACACC 57.996 38.462 0.00 0.00 0.00 4.16
2795 2874 6.798482 TCTTACATTGTACATACCTACACCG 58.202 40.000 0.00 0.00 0.00 4.94
2796 2875 6.602803 TCTTACATTGTACATACCTACACCGA 59.397 38.462 0.00 0.00 0.00 4.69
2797 2876 5.664294 ACATTGTACATACCTACACCGAA 57.336 39.130 0.00 0.00 0.00 4.30
2798 2877 5.657474 ACATTGTACATACCTACACCGAAG 58.343 41.667 0.00 0.00 0.00 3.79
2799 2878 5.419788 ACATTGTACATACCTACACCGAAGA 59.580 40.000 0.00 0.00 0.00 2.87
2800 2879 5.571784 TTGTACATACCTACACCGAAGAG 57.428 43.478 0.00 0.00 0.00 2.85
2801 2880 4.592942 TGTACATACCTACACCGAAGAGT 58.407 43.478 0.00 0.00 0.00 3.24
2802 2881 5.744171 TGTACATACCTACACCGAAGAGTA 58.256 41.667 0.00 0.00 0.00 2.59
2803 2882 6.179756 TGTACATACCTACACCGAAGAGTAA 58.820 40.000 0.00 0.00 0.00 2.24
2804 2883 5.831702 ACATACCTACACCGAAGAGTAAG 57.168 43.478 0.00 0.00 0.00 2.34
2805 2884 5.503927 ACATACCTACACCGAAGAGTAAGA 58.496 41.667 0.00 0.00 0.00 2.10
2806 2885 5.948162 ACATACCTACACCGAAGAGTAAGAA 59.052 40.000 0.00 0.00 0.00 2.52
2807 2886 4.780275 ACCTACACCGAAGAGTAAGAAC 57.220 45.455 0.00 0.00 0.00 3.01
2808 2887 4.147321 ACCTACACCGAAGAGTAAGAACA 58.853 43.478 0.00 0.00 0.00 3.18
2809 2888 4.022503 ACCTACACCGAAGAGTAAGAACAC 60.023 45.833 0.00 0.00 0.00 3.32
2810 2889 3.382048 ACACCGAAGAGTAAGAACACC 57.618 47.619 0.00 0.00 0.00 4.16
2811 2890 2.696707 ACACCGAAGAGTAAGAACACCA 59.303 45.455 0.00 0.00 0.00 4.17
2812 2891 3.323979 ACACCGAAGAGTAAGAACACCAT 59.676 43.478 0.00 0.00 0.00 3.55
2813 2892 4.525487 ACACCGAAGAGTAAGAACACCATA 59.475 41.667 0.00 0.00 0.00 2.74
2814 2893 4.863131 CACCGAAGAGTAAGAACACCATAC 59.137 45.833 0.00 0.00 0.00 2.39
2815 2894 4.525487 ACCGAAGAGTAAGAACACCATACA 59.475 41.667 0.00 0.00 0.00 2.29
2816 2895 5.187186 ACCGAAGAGTAAGAACACCATACAT 59.813 40.000 0.00 0.00 0.00 2.29
2817 2896 5.520288 CCGAAGAGTAAGAACACCATACATG 59.480 44.000 0.00 0.00 0.00 3.21
2818 2897 5.005779 CGAAGAGTAAGAACACCATACATGC 59.994 44.000 0.00 0.00 0.00 4.06
2819 2898 5.683876 AGAGTAAGAACACCATACATGCT 57.316 39.130 0.00 0.00 0.00 3.79
2820 2899 6.054860 AGAGTAAGAACACCATACATGCTT 57.945 37.500 0.00 0.00 0.00 3.91
2821 2900 7.182817 AGAGTAAGAACACCATACATGCTTA 57.817 36.000 0.00 0.00 0.00 3.09
2822 2901 7.268586 AGAGTAAGAACACCATACATGCTTAG 58.731 38.462 0.00 0.00 0.00 2.18
2823 2902 6.349300 AGTAAGAACACCATACATGCTTAGG 58.651 40.000 0.00 0.00 0.00 2.69
2824 2903 4.156455 AGAACACCATACATGCTTAGGG 57.844 45.455 0.00 0.00 0.00 3.53
2825 2904 3.523564 AGAACACCATACATGCTTAGGGT 59.476 43.478 0.00 0.00 36.56 4.34
2826 2905 4.719773 AGAACACCATACATGCTTAGGGTA 59.280 41.667 0.00 0.00 33.82 3.69
2827 2906 5.369699 AGAACACCATACATGCTTAGGGTAT 59.630 40.000 0.00 0.00 33.82 2.73
2828 2907 5.646692 ACACCATACATGCTTAGGGTATT 57.353 39.130 0.00 0.00 33.82 1.89
2829 2908 6.757173 ACACCATACATGCTTAGGGTATTA 57.243 37.500 0.00 0.00 33.82 0.98
2830 2909 7.144234 ACACCATACATGCTTAGGGTATTAA 57.856 36.000 0.00 0.00 33.82 1.40
2831 2910 6.996282 ACACCATACATGCTTAGGGTATTAAC 59.004 38.462 0.00 0.00 33.82 2.01
2832 2911 7.147373 ACACCATACATGCTTAGGGTATTAACT 60.147 37.037 0.00 0.00 33.82 2.24
2833 2912 7.387948 CACCATACATGCTTAGGGTATTAACTC 59.612 40.741 0.00 0.00 33.82 3.01
2834 2913 6.879458 CCATACATGCTTAGGGTATTAACTCC 59.121 42.308 0.00 0.00 0.00 3.85
2835 2914 5.968676 ACATGCTTAGGGTATTAACTCCA 57.031 39.130 0.00 0.00 0.00 3.86
2836 2915 5.681639 ACATGCTTAGGGTATTAACTCCAC 58.318 41.667 0.00 0.00 0.00 4.02
2837 2916 4.765813 TGCTTAGGGTATTAACTCCACC 57.234 45.455 1.11 0.00 0.00 4.61
2838 2917 4.105577 TGCTTAGGGTATTAACTCCACCA 58.894 43.478 0.00 0.00 33.78 4.17
2839 2918 4.724798 TGCTTAGGGTATTAACTCCACCAT 59.275 41.667 0.00 0.00 33.78 3.55
2840 2919 5.192923 TGCTTAGGGTATTAACTCCACCATT 59.807 40.000 0.00 0.00 33.78 3.16
2841 2920 5.763698 GCTTAGGGTATTAACTCCACCATTC 59.236 44.000 0.00 0.00 33.78 2.67
2842 2921 6.634039 GCTTAGGGTATTAACTCCACCATTCA 60.634 42.308 0.00 0.00 33.78 2.57
2843 2922 5.373812 AGGGTATTAACTCCACCATTCAG 57.626 43.478 0.00 0.00 33.78 3.02
2844 2923 4.166144 AGGGTATTAACTCCACCATTCAGG 59.834 45.833 0.00 0.00 45.67 3.86
2874 2953 7.446931 TGAACTTGTATAATTCCTTGTGCTCAA 59.553 33.333 0.66 0.66 0.00 3.02
2942 3025 8.516234 CACACCTAGTACTGTCAGGATTATATC 58.484 40.741 15.74 0.00 33.44 1.63
2978 3061 2.175184 GAATCGAATGGATGGCGGCG 62.175 60.000 0.51 0.51 34.93 6.46
2997 3080 0.454196 GGCGTTATGGCGACCATTTT 59.546 50.000 15.07 0.00 42.23 1.82
3055 3138 0.687354 TGCACTGAGGAAGGAGAACC 59.313 55.000 0.00 0.00 0.00 3.62
3068 3151 2.434359 GAACCGTTGAGGGAGGCG 60.434 66.667 0.00 0.00 46.96 5.52
3160 3243 0.249489 GTGCAGTGTGGAAGACGACT 60.249 55.000 0.00 0.00 33.85 4.18
3177 3260 2.486548 CGACTCTGGGGGTTTCTTTTCA 60.487 50.000 0.00 0.00 0.00 2.69
3325 3408 5.232463 TGGTTTGCTTAGTTAGGTCTTACG 58.768 41.667 0.00 0.00 0.00 3.18
3446 3645 9.841295 AATAAAGCTTACGTTTCATATAAGGGA 57.159 29.630 0.00 0.00 0.00 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 33 7.128263 TGGGCACTAGGTTAATATTTTAGTCCT 59.872 37.037 0.00 0.00 32.28 3.85
102 113 6.469410 AGTGTTTGGACTCCGTTTGATATTA 58.531 36.000 0.00 0.00 0.00 0.98
206 219 4.598257 GCCTAGCGAGCTTGTCAA 57.402 55.556 1.86 0.00 0.00 3.18
235 254 4.284550 TGGGCCACAAGCTCCCAC 62.285 66.667 0.00 0.00 43.71 4.61
237 256 2.440980 GATGGGCCACAAGCTCCC 60.441 66.667 9.28 0.29 43.71 4.30
239 258 0.322816 TCAAGATGGGCCACAAGCTC 60.323 55.000 9.28 1.07 45.08 4.09
240 259 0.610232 GTCAAGATGGGCCACAAGCT 60.610 55.000 9.28 0.49 43.05 3.74
291 314 2.168521 GCTGGCTCTGTGGTATACTTCA 59.831 50.000 2.25 2.07 0.00 3.02
292 315 2.483889 GGCTGGCTCTGTGGTATACTTC 60.484 54.545 2.25 0.00 0.00 3.01
394 417 2.028130 AGCTCTCCGTGATCGATTTCT 58.972 47.619 0.00 0.00 39.71 2.52
432 455 1.153369 CACGCATCATCGGAAGGGT 60.153 57.895 0.00 0.00 38.26 4.34
546 575 4.625742 ACCATCAACGATAAACAGAACTCG 59.374 41.667 0.00 0.00 37.17 4.18
554 583 7.688167 CGATGCATATAACCATCAACGATAAAC 59.312 37.037 0.00 0.00 38.14 2.01
557 586 6.310224 CACGATGCATATAACCATCAACGATA 59.690 38.462 0.00 0.00 38.14 2.92
566 595 4.674281 TGGTACACGATGCATATAACCA 57.326 40.909 0.00 6.96 33.53 3.67
588 617 3.004315 ACTGTCCGTTGGCAAAATTACTG 59.996 43.478 0.00 5.21 0.00 2.74
658 687 5.186021 AGCATAATTGGGTAGGTATCTCTCG 59.814 44.000 0.00 0.00 0.00 4.04
778 807 0.325296 TACTGGGCCAGTTCCGAGAT 60.325 55.000 41.43 18.64 42.59 2.75
782 811 0.251916 TTGATACTGGGCCAGTTCCG 59.748 55.000 41.43 16.55 42.59 4.30
783 812 2.736670 ATTGATACTGGGCCAGTTCC 57.263 50.000 41.43 30.89 42.59 3.62
883 912 5.497911 GCACGTACAAACATTGTTTTGTGTC 60.498 40.000 21.84 15.53 46.73 3.67
896 925 7.464358 AGATTAATTGAGATGCACGTACAAAC 58.536 34.615 0.00 0.00 0.00 2.93
897 926 7.609760 AGATTAATTGAGATGCACGTACAAA 57.390 32.000 0.00 0.00 0.00 2.83
898 927 8.887036 ATAGATTAATTGAGATGCACGTACAA 57.113 30.769 0.00 0.00 0.00 2.41
921 950 3.517901 ACGTGGGTTCTGATCCAAGAATA 59.482 43.478 15.95 0.00 38.41 1.75
922 951 2.305927 ACGTGGGTTCTGATCCAAGAAT 59.694 45.455 15.95 0.00 38.41 2.40
1002 1031 1.615392 GGAGGTTGCTTTGCTTGTCAT 59.385 47.619 0.00 0.00 0.00 3.06
1004 1033 1.032014 TGGAGGTTGCTTTGCTTGTC 58.968 50.000 0.00 0.00 0.00 3.18
1025 1054 5.691850 GCTTCTGCTTGTACGTTGTCACG 62.692 52.174 0.00 0.00 43.47 4.35
1583 1627 5.105567 TGAACAAGTCCCAGAAGTTTGTA 57.894 39.130 0.00 0.00 32.18 2.41
1685 1741 2.670148 GGGGATCGGCACAGGACTT 61.670 63.158 0.00 0.00 0.00 3.01
1810 1866 3.313874 CCATCTCCTCGTTGGCCT 58.686 61.111 3.32 0.00 35.26 5.19
1814 1870 1.450312 GGTGGCCATCTCCTCGTTG 60.450 63.158 9.72 0.00 0.00 4.10
1838 1897 2.510238 GCCTGCAGCGACGAGATT 60.510 61.111 8.66 0.00 0.00 2.40
1904 1963 0.476611 AGAAGGTCTCCTGCCCCTTT 60.477 55.000 0.00 0.00 38.68 3.11
2072 2131 1.215382 CTCGTCGAAGGATGCCACA 59.785 57.895 0.00 0.00 0.00 4.17
2121 2180 2.267961 GAACGTTGGCTCCCGGAT 59.732 61.111 5.00 0.00 0.00 4.18
2132 2191 0.981943 CCTTGGAGTAGGGGAACGTT 59.018 55.000 0.00 0.00 0.00 3.99
2392 2465 1.303643 GCAGGAAGTGGAAGGGTGG 60.304 63.158 0.00 0.00 0.00 4.61
2415 2494 1.080501 CGCCGCAGAAGAAGAGTGA 60.081 57.895 0.00 0.00 0.00 3.41
2431 2510 4.825377 AAAAACAGTGGTTGCCGC 57.175 50.000 0.00 0.00 37.30 6.53
2554 2633 7.817478 TGAAACAGAAGAGCGACTTATTATTGA 59.183 33.333 0.00 0.00 39.13 2.57
2555 2634 7.963981 TGAAACAGAAGAGCGACTTATTATTG 58.036 34.615 0.00 0.00 39.13 1.90
2556 2635 8.547967 TTGAAACAGAAGAGCGACTTATTATT 57.452 30.769 0.00 0.00 39.13 1.40
2557 2636 8.547967 TTTGAAACAGAAGAGCGACTTATTAT 57.452 30.769 0.00 0.00 39.13 1.28
2558 2637 7.870954 TCTTTGAAACAGAAGAGCGACTTATTA 59.129 33.333 0.00 0.00 39.13 0.98
2559 2638 6.706270 TCTTTGAAACAGAAGAGCGACTTATT 59.294 34.615 0.00 0.00 39.13 1.40
2560 2639 6.223852 TCTTTGAAACAGAAGAGCGACTTAT 58.776 36.000 0.00 0.00 39.13 1.73
2561 2640 5.597806 TCTTTGAAACAGAAGAGCGACTTA 58.402 37.500 0.00 0.00 39.13 2.24
2562 2641 4.442706 TCTTTGAAACAGAAGAGCGACTT 58.557 39.130 0.00 0.00 42.03 3.01
2563 2642 4.060038 TCTTTGAAACAGAAGAGCGACT 57.940 40.909 0.00 0.00 0.00 4.18
2564 2643 4.999751 ATCTTTGAAACAGAAGAGCGAC 57.000 40.909 0.00 0.00 35.54 5.19
2565 2644 7.672983 ATTTATCTTTGAAACAGAAGAGCGA 57.327 32.000 0.00 0.00 35.54 4.93
2566 2645 7.483059 GGAATTTATCTTTGAAACAGAAGAGCG 59.517 37.037 0.00 0.00 35.54 5.03
2567 2646 8.518702 AGGAATTTATCTTTGAAACAGAAGAGC 58.481 33.333 0.00 0.00 35.54 4.09
2641 2720 9.985730 CCTTGTGGCATATAAATCAATATTGTT 57.014 29.630 14.97 4.27 0.00 2.83
2642 2721 9.146586 ACCTTGTGGCATATAAATCAATATTGT 57.853 29.630 14.97 0.00 36.63 2.71
2643 2722 9.414295 CACCTTGTGGCATATAAATCAATATTG 57.586 33.333 9.29 9.29 36.63 1.90
2644 2723 9.365906 TCACCTTGTGGCATATAAATCAATATT 57.634 29.630 0.00 0.00 36.63 1.28
2645 2724 8.938801 TCACCTTGTGGCATATAAATCAATAT 57.061 30.769 0.00 0.00 36.63 1.28
2646 2725 8.759481 TTCACCTTGTGGCATATAAATCAATA 57.241 30.769 0.00 0.00 36.63 1.90
2647 2726 7.560991 TCTTCACCTTGTGGCATATAAATCAAT 59.439 33.333 0.00 0.00 36.63 2.57
2648 2727 6.889177 TCTTCACCTTGTGGCATATAAATCAA 59.111 34.615 0.00 0.00 36.63 2.57
2649 2728 6.422333 TCTTCACCTTGTGGCATATAAATCA 58.578 36.000 0.00 0.00 36.63 2.57
2650 2729 6.942532 TCTTCACCTTGTGGCATATAAATC 57.057 37.500 0.00 0.00 36.63 2.17
2651 2730 7.716799 TTTCTTCACCTTGTGGCATATAAAT 57.283 32.000 0.00 0.00 36.63 1.40
2652 2731 7.531857 TTTTCTTCACCTTGTGGCATATAAA 57.468 32.000 0.00 0.00 36.63 1.40
2653 2732 7.531857 TTTTTCTTCACCTTGTGGCATATAA 57.468 32.000 0.00 0.00 36.63 0.98
2654 2733 7.147915 GGATTTTTCTTCACCTTGTGGCATATA 60.148 37.037 0.00 0.00 36.63 0.86
2655 2734 6.351286 GGATTTTTCTTCACCTTGTGGCATAT 60.351 38.462 0.00 0.00 36.63 1.78
2656 2735 5.047377 GGATTTTTCTTCACCTTGTGGCATA 60.047 40.000 0.00 0.00 36.63 3.14
2657 2736 4.262592 GGATTTTTCTTCACCTTGTGGCAT 60.263 41.667 0.00 0.00 36.63 4.40
2658 2737 3.069443 GGATTTTTCTTCACCTTGTGGCA 59.931 43.478 0.00 0.00 36.63 4.92
2659 2738 3.554960 GGGATTTTTCTTCACCTTGTGGC 60.555 47.826 0.00 0.00 36.63 5.01
2660 2739 3.006859 GGGGATTTTTCTTCACCTTGTGG 59.993 47.826 0.00 0.00 33.61 4.17
2661 2740 3.897505 AGGGGATTTTTCTTCACCTTGTG 59.102 43.478 0.00 0.00 44.88 3.33
2662 2741 4.199002 AGGGGATTTTTCTTCACCTTGT 57.801 40.909 0.00 0.00 44.88 3.16
2663 2742 6.857437 AATAGGGGATTTTTCTTCACCTTG 57.143 37.500 0.00 0.00 44.88 3.61
2664 2743 7.256655 CCAAAATAGGGGATTTTTCTTCACCTT 60.257 37.037 0.00 0.00 44.88 3.50
2666 2745 6.212589 TCCAAAATAGGGGATTTTTCTTCACC 59.787 38.462 0.00 0.00 43.83 4.02
2667 2746 7.239763 TCCAAAATAGGGGATTTTTCTTCAC 57.760 36.000 0.00 0.00 43.83 3.18
2668 2747 6.070824 GCTCCAAAATAGGGGATTTTTCTTCA 60.071 38.462 0.00 0.00 43.83 3.02
2669 2748 6.070824 TGCTCCAAAATAGGGGATTTTTCTTC 60.071 38.462 0.00 0.00 43.83 2.87
2670 2749 5.784906 TGCTCCAAAATAGGGGATTTTTCTT 59.215 36.000 0.00 0.00 43.83 2.52
2671 2750 5.341169 TGCTCCAAAATAGGGGATTTTTCT 58.659 37.500 0.00 0.00 43.83 2.52
2672 2751 5.675684 TGCTCCAAAATAGGGGATTTTTC 57.324 39.130 0.00 0.00 43.83 2.29
2673 2752 6.446909 TTTGCTCCAAAATAGGGGATTTTT 57.553 33.333 0.00 0.00 43.83 1.94
2674 2753 6.446909 TTTTGCTCCAAAATAGGGGATTTT 57.553 33.333 0.00 0.00 46.60 1.82
2675 2754 6.446909 TTTTTGCTCCAAAATAGGGGATTT 57.553 33.333 4.21 0.00 41.89 2.17
2676 2755 6.352996 GGATTTTTGCTCCAAAATAGGGGATT 60.353 38.462 4.21 0.00 41.89 3.01
2677 2756 5.130975 GGATTTTTGCTCCAAAATAGGGGAT 59.869 40.000 4.21 0.00 41.89 3.85
2678 2757 4.469586 GGATTTTTGCTCCAAAATAGGGGA 59.530 41.667 4.21 0.00 41.89 4.81
2679 2758 4.384098 GGGATTTTTGCTCCAAAATAGGGG 60.384 45.833 4.21 0.00 41.89 4.79
2680 2759 4.224818 TGGGATTTTTGCTCCAAAATAGGG 59.775 41.667 4.21 0.00 41.89 3.53
2681 2760 5.419239 TGGGATTTTTGCTCCAAAATAGG 57.581 39.130 4.21 0.00 41.89 2.57
2682 2761 9.048446 CATAATGGGATTTTTGCTCCAAAATAG 57.952 33.333 4.21 0.00 41.89 1.73
2683 2762 7.498570 GCATAATGGGATTTTTGCTCCAAAATA 59.501 33.333 4.21 0.00 41.89 1.40
2684 2763 6.319405 GCATAATGGGATTTTTGCTCCAAAAT 59.681 34.615 4.21 2.62 41.89 1.82
2685 2764 5.647225 GCATAATGGGATTTTTGCTCCAAAA 59.353 36.000 0.00 0.00 40.85 2.44
2686 2765 5.184711 GCATAATGGGATTTTTGCTCCAAA 58.815 37.500 0.00 0.00 34.24 3.28
2687 2766 4.383989 GGCATAATGGGATTTTTGCTCCAA 60.384 41.667 0.00 0.00 34.24 3.53
2688 2767 3.134442 GGCATAATGGGATTTTTGCTCCA 59.866 43.478 0.00 0.00 34.24 3.86
2689 2768 3.389002 AGGCATAATGGGATTTTTGCTCC 59.611 43.478 0.00 0.00 33.39 4.70
2690 2769 4.502087 GGAGGCATAATGGGATTTTTGCTC 60.502 45.833 0.00 0.00 33.39 4.26
2691 2770 3.389002 GGAGGCATAATGGGATTTTTGCT 59.611 43.478 0.00 0.00 33.39 3.91
2692 2771 3.494924 GGGAGGCATAATGGGATTTTTGC 60.495 47.826 0.00 0.00 32.60 3.68
2693 2772 3.071457 GGGGAGGCATAATGGGATTTTTG 59.929 47.826 0.00 0.00 0.00 2.44
2694 2773 3.051109 AGGGGAGGCATAATGGGATTTTT 60.051 43.478 0.00 0.00 0.00 1.94
2695 2774 2.524005 AGGGGAGGCATAATGGGATTTT 59.476 45.455 0.00 0.00 0.00 1.82
2696 2775 2.110721 GAGGGGAGGCATAATGGGATTT 59.889 50.000 0.00 0.00 0.00 2.17
2697 2776 1.713078 GAGGGGAGGCATAATGGGATT 59.287 52.381 0.00 0.00 0.00 3.01
2698 2777 1.376649 GAGGGGAGGCATAATGGGAT 58.623 55.000 0.00 0.00 0.00 3.85
2699 2778 0.772124 GGAGGGGAGGCATAATGGGA 60.772 60.000 0.00 0.00 0.00 4.37
2700 2779 0.773700 AGGAGGGGAGGCATAATGGG 60.774 60.000 0.00 0.00 0.00 4.00
2701 2780 1.912043 CTAGGAGGGGAGGCATAATGG 59.088 57.143 0.00 0.00 0.00 3.16
2702 2781 1.280421 GCTAGGAGGGGAGGCATAATG 59.720 57.143 0.00 0.00 0.00 1.90
2703 2782 1.662686 GCTAGGAGGGGAGGCATAAT 58.337 55.000 0.00 0.00 0.00 1.28
2704 2783 0.832135 CGCTAGGAGGGGAGGCATAA 60.832 60.000 0.00 0.00 0.00 1.90
2705 2784 1.228894 CGCTAGGAGGGGAGGCATA 60.229 63.158 0.00 0.00 0.00 3.14
2706 2785 2.525381 CGCTAGGAGGGGAGGCAT 60.525 66.667 0.00 0.00 0.00 4.40
2709 2788 2.105806 GAATGCGCTAGGAGGGGAGG 62.106 65.000 9.73 0.00 31.11 4.30
2710 2789 1.118356 AGAATGCGCTAGGAGGGGAG 61.118 60.000 9.73 0.00 31.11 4.30
2711 2790 0.187606 TAGAATGCGCTAGGAGGGGA 59.812 55.000 9.73 0.00 32.32 4.81
2712 2791 1.270907 ATAGAATGCGCTAGGAGGGG 58.729 55.000 9.73 0.00 0.00 4.79
2713 2792 5.361285 ACTTATATAGAATGCGCTAGGAGGG 59.639 44.000 9.73 0.00 0.00 4.30
2714 2793 6.095580 TGACTTATATAGAATGCGCTAGGAGG 59.904 42.308 9.73 0.00 0.00 4.30
2715 2794 7.089770 TGACTTATATAGAATGCGCTAGGAG 57.910 40.000 9.73 0.00 0.00 3.69
2716 2795 6.095580 CCTGACTTATATAGAATGCGCTAGGA 59.904 42.308 9.73 0.00 0.00 2.94
2717 2796 6.095580 TCCTGACTTATATAGAATGCGCTAGG 59.904 42.308 9.73 0.00 0.00 3.02
2718 2797 7.089770 TCCTGACTTATATAGAATGCGCTAG 57.910 40.000 9.73 0.00 0.00 3.42
2719 2798 7.393515 TCTTCCTGACTTATATAGAATGCGCTA 59.606 37.037 9.73 0.00 0.00 4.26
2720 2799 5.984695 TCCTGACTTATATAGAATGCGCT 57.015 39.130 9.73 0.00 0.00 5.92
2721 2800 6.390721 TCTTCCTGACTTATATAGAATGCGC 58.609 40.000 0.00 0.00 0.00 6.09
2722 2801 6.529829 GCTCTTCCTGACTTATATAGAATGCG 59.470 42.308 0.00 0.00 0.00 4.73
2723 2802 7.330700 GTGCTCTTCCTGACTTATATAGAATGC 59.669 40.741 0.00 0.00 0.00 3.56
2724 2803 7.540400 CGTGCTCTTCCTGACTTATATAGAATG 59.460 40.741 0.00 0.00 0.00 2.67
2725 2804 7.231722 ACGTGCTCTTCCTGACTTATATAGAAT 59.768 37.037 0.00 0.00 0.00 2.40
2726 2805 6.546403 ACGTGCTCTTCCTGACTTATATAGAA 59.454 38.462 0.00 0.00 0.00 2.10
2727 2806 6.062749 ACGTGCTCTTCCTGACTTATATAGA 58.937 40.000 0.00 0.00 0.00 1.98
2728 2807 6.320494 ACGTGCTCTTCCTGACTTATATAG 57.680 41.667 0.00 0.00 0.00 1.31
2729 2808 5.049612 CGACGTGCTCTTCCTGACTTATATA 60.050 44.000 0.00 0.00 0.00 0.86
2730 2809 4.261238 CGACGTGCTCTTCCTGACTTATAT 60.261 45.833 0.00 0.00 0.00 0.86
2731 2810 3.064958 CGACGTGCTCTTCCTGACTTATA 59.935 47.826 0.00 0.00 0.00 0.98
2732 2811 2.159366 CGACGTGCTCTTCCTGACTTAT 60.159 50.000 0.00 0.00 0.00 1.73
2733 2812 1.199327 CGACGTGCTCTTCCTGACTTA 59.801 52.381 0.00 0.00 0.00 2.24
2734 2813 0.039074 CGACGTGCTCTTCCTGACTT 60.039 55.000 0.00 0.00 0.00 3.01
2735 2814 1.581954 CGACGTGCTCTTCCTGACT 59.418 57.895 0.00 0.00 0.00 3.41
2736 2815 1.444553 CCGACGTGCTCTTCCTGAC 60.445 63.158 0.00 0.00 0.00 3.51
2737 2816 2.636412 CCCGACGTGCTCTTCCTGA 61.636 63.158 0.00 0.00 0.00 3.86
2738 2817 2.125912 CCCGACGTGCTCTTCCTG 60.126 66.667 0.00 0.00 0.00 3.86
2739 2818 2.207924 AACCCGACGTGCTCTTCCT 61.208 57.895 0.00 0.00 0.00 3.36
2740 2819 2.027625 CAACCCGACGTGCTCTTCC 61.028 63.158 0.00 0.00 0.00 3.46
2741 2820 1.006571 TCAACCCGACGTGCTCTTC 60.007 57.895 0.00 0.00 0.00 2.87
2742 2821 1.006102 CTCAACCCGACGTGCTCTT 60.006 57.895 0.00 0.00 0.00 2.85
2743 2822 2.651361 CTCAACCCGACGTGCTCT 59.349 61.111 0.00 0.00 0.00 4.09
2744 2823 2.432628 CCTCAACCCGACGTGCTC 60.433 66.667 0.00 0.00 0.00 4.26
2745 2824 4.003788 CCCTCAACCCGACGTGCT 62.004 66.667 0.00 0.00 0.00 4.40
2746 2825 3.819877 AACCCTCAACCCGACGTGC 62.820 63.158 0.00 0.00 0.00 5.34
2747 2826 1.959226 CAACCCTCAACCCGACGTG 60.959 63.158 0.00 0.00 0.00 4.49
2748 2827 1.688269 TTCAACCCTCAACCCGACGT 61.688 55.000 0.00 0.00 0.00 4.34
2749 2828 1.070105 TTCAACCCTCAACCCGACG 59.930 57.895 0.00 0.00 0.00 5.12
2750 2829 0.108019 AGTTCAACCCTCAACCCGAC 59.892 55.000 0.00 0.00 0.00 4.79
2751 2830 0.395312 GAGTTCAACCCTCAACCCGA 59.605 55.000 0.00 0.00 0.00 5.14
2752 2831 0.396811 AGAGTTCAACCCTCAACCCG 59.603 55.000 0.00 0.00 0.00 5.28
2753 2832 1.700186 AGAGAGTTCAACCCTCAACCC 59.300 52.381 1.43 0.00 0.00 4.11
2754 2833 3.493767 AAGAGAGTTCAACCCTCAACC 57.506 47.619 1.43 0.00 0.00 3.77
2755 2834 4.957296 TGTAAGAGAGTTCAACCCTCAAC 58.043 43.478 1.43 0.29 0.00 3.18
2756 2835 5.825593 ATGTAAGAGAGTTCAACCCTCAA 57.174 39.130 1.43 0.00 0.00 3.02
2757 2836 5.071788 ACAATGTAAGAGAGTTCAACCCTCA 59.928 40.000 1.43 0.00 0.00 3.86
2758 2837 5.552178 ACAATGTAAGAGAGTTCAACCCTC 58.448 41.667 0.00 0.00 0.00 4.30
2759 2838 5.568620 ACAATGTAAGAGAGTTCAACCCT 57.431 39.130 0.00 0.00 0.00 4.34
2760 2839 6.228258 TGTACAATGTAAGAGAGTTCAACCC 58.772 40.000 0.00 0.00 0.00 4.11
2761 2840 7.907214 ATGTACAATGTAAGAGAGTTCAACC 57.093 36.000 0.00 0.00 0.00 3.77
2762 2841 8.870879 GGTATGTACAATGTAAGAGAGTTCAAC 58.129 37.037 0.00 0.00 0.00 3.18
2763 2842 8.812972 AGGTATGTACAATGTAAGAGAGTTCAA 58.187 33.333 0.00 0.00 0.00 2.69
2764 2843 8.362464 AGGTATGTACAATGTAAGAGAGTTCA 57.638 34.615 0.00 0.00 0.00 3.18
2765 2844 9.733219 GTAGGTATGTACAATGTAAGAGAGTTC 57.267 37.037 0.00 0.00 0.00 3.01
2766 2845 9.251440 TGTAGGTATGTACAATGTAAGAGAGTT 57.749 33.333 0.00 0.00 29.74 3.01
2767 2846 8.684520 GTGTAGGTATGTACAATGTAAGAGAGT 58.315 37.037 0.00 0.00 34.69 3.24
2768 2847 8.136165 GGTGTAGGTATGTACAATGTAAGAGAG 58.864 40.741 0.00 0.00 34.69 3.20
2769 2848 7.201758 CGGTGTAGGTATGTACAATGTAAGAGA 60.202 40.741 0.00 0.00 34.69 3.10
2770 2849 6.916387 CGGTGTAGGTATGTACAATGTAAGAG 59.084 42.308 0.00 0.00 34.69 2.85
2771 2850 6.602803 TCGGTGTAGGTATGTACAATGTAAGA 59.397 38.462 0.00 0.00 34.69 2.10
2772 2851 6.798482 TCGGTGTAGGTATGTACAATGTAAG 58.202 40.000 0.00 0.00 34.69 2.34
2773 2852 6.772360 TCGGTGTAGGTATGTACAATGTAA 57.228 37.500 0.00 0.00 34.69 2.41
2774 2853 6.602803 TCTTCGGTGTAGGTATGTACAATGTA 59.397 38.462 0.00 0.00 34.69 2.29
2775 2854 5.419788 TCTTCGGTGTAGGTATGTACAATGT 59.580 40.000 0.00 0.00 34.69 2.71
2776 2855 5.898174 TCTTCGGTGTAGGTATGTACAATG 58.102 41.667 0.00 0.00 34.69 2.82
2777 2856 5.655532 ACTCTTCGGTGTAGGTATGTACAAT 59.344 40.000 0.00 0.00 34.69 2.71
2778 2857 5.012239 ACTCTTCGGTGTAGGTATGTACAA 58.988 41.667 0.00 0.00 34.69 2.41
2779 2858 4.592942 ACTCTTCGGTGTAGGTATGTACA 58.407 43.478 0.00 0.00 0.00 2.90
2780 2859 6.540189 TCTTACTCTTCGGTGTAGGTATGTAC 59.460 42.308 0.00 0.00 0.00 2.90
2781 2860 6.653020 TCTTACTCTTCGGTGTAGGTATGTA 58.347 40.000 0.00 0.00 0.00 2.29
2782 2861 5.503927 TCTTACTCTTCGGTGTAGGTATGT 58.496 41.667 0.00 0.00 0.00 2.29
2783 2862 6.127814 TGTTCTTACTCTTCGGTGTAGGTATG 60.128 42.308 0.00 0.00 0.00 2.39
2784 2863 5.948162 TGTTCTTACTCTTCGGTGTAGGTAT 59.052 40.000 0.00 0.00 0.00 2.73
2785 2864 5.182001 GTGTTCTTACTCTTCGGTGTAGGTA 59.818 44.000 0.00 0.00 0.00 3.08
2786 2865 4.022503 GTGTTCTTACTCTTCGGTGTAGGT 60.023 45.833 0.00 0.00 0.00 3.08
2787 2866 4.483311 GTGTTCTTACTCTTCGGTGTAGG 58.517 47.826 0.00 0.00 0.00 3.18
2788 2867 4.022589 TGGTGTTCTTACTCTTCGGTGTAG 60.023 45.833 0.00 0.00 0.00 2.74
2789 2868 3.890756 TGGTGTTCTTACTCTTCGGTGTA 59.109 43.478 0.00 0.00 0.00 2.90
2790 2869 2.696707 TGGTGTTCTTACTCTTCGGTGT 59.303 45.455 0.00 0.00 0.00 4.16
2791 2870 3.380479 TGGTGTTCTTACTCTTCGGTG 57.620 47.619 0.00 0.00 0.00 4.94
2792 2871 4.525487 TGTATGGTGTTCTTACTCTTCGGT 59.475 41.667 0.00 0.00 0.00 4.69
2793 2872 5.068234 TGTATGGTGTTCTTACTCTTCGG 57.932 43.478 0.00 0.00 0.00 4.30
2794 2873 5.005779 GCATGTATGGTGTTCTTACTCTTCG 59.994 44.000 0.00 0.00 0.00 3.79
2795 2874 6.109359 AGCATGTATGGTGTTCTTACTCTTC 58.891 40.000 0.00 0.00 37.10 2.87
2796 2875 6.054860 AGCATGTATGGTGTTCTTACTCTT 57.945 37.500 0.00 0.00 37.10 2.85
2797 2876 5.683876 AGCATGTATGGTGTTCTTACTCT 57.316 39.130 0.00 0.00 37.10 3.24
2798 2877 6.480320 CCTAAGCATGTATGGTGTTCTTACTC 59.520 42.308 0.00 0.00 38.70 2.59
2799 2878 6.349300 CCTAAGCATGTATGGTGTTCTTACT 58.651 40.000 0.00 0.00 38.70 2.24
2800 2879 5.527582 CCCTAAGCATGTATGGTGTTCTTAC 59.472 44.000 0.00 0.00 38.70 2.34
2801 2880 5.190925 ACCCTAAGCATGTATGGTGTTCTTA 59.809 40.000 0.00 0.00 38.70 2.10
2802 2881 4.018415 ACCCTAAGCATGTATGGTGTTCTT 60.018 41.667 0.00 0.00 38.70 2.52
2803 2882 3.523564 ACCCTAAGCATGTATGGTGTTCT 59.476 43.478 0.00 0.00 38.70 3.01
2804 2883 3.886123 ACCCTAAGCATGTATGGTGTTC 58.114 45.455 0.00 0.00 38.70 3.18
2805 2884 5.646692 ATACCCTAAGCATGTATGGTGTT 57.353 39.130 0.00 0.00 38.70 3.32
2806 2885 5.646692 AATACCCTAAGCATGTATGGTGT 57.353 39.130 0.00 0.00 38.70 4.16
2807 2886 7.224297 AGTTAATACCCTAAGCATGTATGGTG 58.776 38.462 0.00 0.00 38.70 4.17
2808 2887 7.388638 AGTTAATACCCTAAGCATGTATGGT 57.611 36.000 0.00 0.00 40.78 3.55
2809 2888 6.879458 GGAGTTAATACCCTAAGCATGTATGG 59.121 42.308 0.00 0.00 0.00 2.74
2810 2889 7.387948 GTGGAGTTAATACCCTAAGCATGTATG 59.612 40.741 0.00 0.00 0.00 2.39
2811 2890 7.450903 GTGGAGTTAATACCCTAAGCATGTAT 58.549 38.462 0.00 0.00 0.00 2.29
2812 2891 6.183361 GGTGGAGTTAATACCCTAAGCATGTA 60.183 42.308 0.00 0.00 0.00 2.29
2813 2892 5.397559 GGTGGAGTTAATACCCTAAGCATGT 60.398 44.000 0.00 0.00 0.00 3.21
2814 2893 5.063880 GGTGGAGTTAATACCCTAAGCATG 58.936 45.833 0.00 0.00 0.00 4.06
2815 2894 4.724798 TGGTGGAGTTAATACCCTAAGCAT 59.275 41.667 0.00 0.00 33.51 3.79
2816 2895 4.105577 TGGTGGAGTTAATACCCTAAGCA 58.894 43.478 0.00 0.00 33.51 3.91
2817 2896 4.765813 TGGTGGAGTTAATACCCTAAGC 57.234 45.455 0.00 0.00 33.51 3.09
2818 2897 6.895782 TGAATGGTGGAGTTAATACCCTAAG 58.104 40.000 0.00 0.00 33.51 2.18
2819 2898 6.126594 CCTGAATGGTGGAGTTAATACCCTAA 60.127 42.308 0.00 0.00 33.51 2.69
2820 2899 5.368523 CCTGAATGGTGGAGTTAATACCCTA 59.631 44.000 0.00 0.00 33.51 3.53
2821 2900 4.166144 CCTGAATGGTGGAGTTAATACCCT 59.834 45.833 0.00 0.00 33.51 4.34
2822 2901 4.461198 CCTGAATGGTGGAGTTAATACCC 58.539 47.826 0.00 0.00 33.51 3.69
2839 2918 7.037586 AGGAATTATACAAGTTCAGGACCTGAA 60.038 37.037 29.45 29.45 46.50 3.02
2840 2919 6.443849 AGGAATTATACAAGTTCAGGACCTGA 59.556 38.462 20.74 20.74 38.87 3.86
2841 2920 6.653989 AGGAATTATACAAGTTCAGGACCTG 58.346 40.000 15.99 15.99 0.00 4.00
2842 2921 6.893020 AGGAATTATACAAGTTCAGGACCT 57.107 37.500 0.00 0.00 0.00 3.85
2843 2922 6.884836 ACAAGGAATTATACAAGTTCAGGACC 59.115 38.462 0.00 0.00 0.00 4.46
2844 2923 7.626452 GCACAAGGAATTATACAAGTTCAGGAC 60.626 40.741 0.00 0.00 0.00 3.85
2845 2924 6.374333 GCACAAGGAATTATACAAGTTCAGGA 59.626 38.462 0.00 0.00 0.00 3.86
2942 3025 1.836999 TTCCGACCACCATGTCCAGG 61.837 60.000 0.00 0.00 31.35 4.45
2946 3029 0.174845 TCGATTCCGACCACCATGTC 59.825 55.000 0.00 0.00 40.30 3.06
2978 3061 0.454196 AAAATGGTCGCCATAACGCC 59.546 50.000 11.07 0.00 44.40 5.68
2985 3068 2.569354 GCACCCAAAATGGTCGCCA 61.569 57.895 1.01 1.01 36.12 5.69
2991 3074 1.468985 TCCATACGCACCCAAAATGG 58.531 50.000 0.00 0.00 38.76 3.16
2997 3080 0.978667 TAGCCTTCCATACGCACCCA 60.979 55.000 0.00 0.00 0.00 4.51
3055 3138 2.125912 CTCACGCCTCCCTCAACG 60.126 66.667 0.00 0.00 0.00 4.10
3068 3151 6.274157 TGAGTCTTACAGATCCTTTCTCAC 57.726 41.667 0.00 0.00 29.93 3.51
3087 3170 3.262915 CCTTCCTCAGAAACCTGATGAGT 59.737 47.826 0.00 0.00 39.70 3.41
3091 3174 3.201708 CCATCCTTCCTCAGAAACCTGAT 59.798 47.826 0.00 0.00 39.70 2.90
3160 3243 6.081356 ACATAAATGAAAAGAAACCCCCAGA 58.919 36.000 0.00 0.00 0.00 3.86
3391 3590 1.274712 TGCAATGGTTTTGGGGGATC 58.725 50.000 0.00 0.00 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.