Multiple sequence alignment - TraesCS3D01G544000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G544000 chr3D 100.000 3065 0 0 1 3065 613746628 613749692 0.000000e+00 5661.0
1 TraesCS3D01G544000 chr3B 82.455 1100 88 68 849 1865 822983845 822984922 0.000000e+00 865.0
2 TraesCS3D01G544000 chr3B 89.964 548 25 14 1 518 822982944 822983491 0.000000e+00 680.0
3 TraesCS3D01G544000 chr3B 91.935 62 4 1 2389 2450 822988628 822988688 5.450000e-13 86.1
4 TraesCS3D01G544000 chr3A 90.328 548 24 7 1 519 749413960 749414507 0.000000e+00 691.0
5 TraesCS3D01G544000 chr3A 82.460 496 49 23 1685 2149 749415570 749416058 1.710000e-107 399.0
6 TraesCS3D01G544000 chr3A 86.792 371 23 17 1189 1556 749415139 749415486 1.030000e-104 390.0
7 TraesCS3D01G544000 chr3A 83.599 439 41 17 1427 1856 57004667 57005083 1.720000e-102 383.0
8 TraesCS3D01G544000 chr3A 84.466 309 18 14 791 1080 749414714 749415011 8.370000e-71 278.0
9 TraesCS3D01G544000 chr3A 86.486 148 12 6 2677 2817 749416569 749416715 4.090000e-34 156.0
10 TraesCS3D01G544000 chr3A 92.537 67 4 1 2805 2871 749416747 749416812 9.050000e-16 95.3
11 TraesCS3D01G544000 chr3A 100.000 33 0 0 2621 2653 749449634 749449666 9.180000e-06 62.1
12 TraesCS3D01G544000 chr1D 79.890 363 49 18 1 352 25829112 25829461 8.490000e-61 244.0
13 TraesCS3D01G544000 chr1D 79.459 370 30 21 2452 2792 173041750 173041398 1.430000e-53 220.0
14 TraesCS3D01G544000 chr1D 83.908 87 4 6 2805 2891 173041357 173041281 1.180000e-09 75.0
15 TraesCS3D01G544000 chr1D 100.000 31 0 0 431 461 25829485 25829515 1.190000e-04 58.4
16 TraesCS3D01G544000 chr5D 84.848 99 12 2 1214 1309 533913232 533913330 2.520000e-16 97.1
17 TraesCS3D01G544000 chr5B 83.838 99 13 2 1214 1309 673988975 673989073 1.170000e-14 91.6
18 TraesCS3D01G544000 chr4A 84.615 91 11 2 1214 1301 637966614 637966524 1.510000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G544000 chr3D 613746628 613749692 3064 False 5661.000000 5661 100.000000 1 3065 1 chr3D.!!$F1 3064
1 TraesCS3D01G544000 chr3B 822982944 822988688 5744 False 543.700000 865 88.118000 1 2450 3 chr3B.!!$F1 2449
2 TraesCS3D01G544000 chr3A 749413960 749416812 2852 False 334.883333 691 87.178167 1 2871 6 chr3A.!!$F3 2870

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
766 855 0.389391 CACGCGGAGTGGATTAGGAT 59.611 55.0 12.47 0.0 46.77 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2556 3025 0.03467 GATCCTGCTGGTCCTTGCTT 60.035 55.0 9.73 0.0 34.23 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
109 133 1.896220 TCATTCAGTGGTGTGGAAGC 58.104 50.000 0.00 0.00 0.00 3.86
110 134 1.142667 TCATTCAGTGGTGTGGAAGCA 59.857 47.619 0.00 0.00 0.00 3.91
123 147 1.270305 TGGAAGCAGCTACTGACACAC 60.270 52.381 0.00 0.00 32.44 3.82
181 215 0.683504 ACTACGAGAGCGGGGACATT 60.684 55.000 0.00 0.00 43.17 2.71
490 533 1.752833 GTCCTCGTTCCCCAACACT 59.247 57.895 0.00 0.00 32.14 3.55
519 562 2.510012 CGAGCTGCGCTGATCCAA 60.510 61.111 23.97 0.00 39.88 3.53
520 563 2.523507 CGAGCTGCGCTGATCCAAG 61.524 63.158 23.97 8.93 39.88 3.61
521 564 1.153489 GAGCTGCGCTGATCCAAGA 60.153 57.895 20.30 0.00 39.88 3.02
525 568 1.660167 CTGCGCTGATCCAAGATGAA 58.340 50.000 9.73 0.00 0.00 2.57
554 621 1.039856 GGCTTGGAACTGGCTCAAAA 58.960 50.000 0.00 0.00 0.00 2.44
566 633 6.558488 ACTGGCTCAAAATATTCTCTCTCT 57.442 37.500 0.00 0.00 0.00 3.10
568 635 6.383726 ACTGGCTCAAAATATTCTCTCTCTCT 59.616 38.462 0.00 0.00 0.00 3.10
569 636 7.092935 ACTGGCTCAAAATATTCTCTCTCTCTT 60.093 37.037 0.00 0.00 0.00 2.85
570 637 7.271511 TGGCTCAAAATATTCTCTCTCTCTTC 58.728 38.462 0.00 0.00 0.00 2.87
571 638 6.705825 GGCTCAAAATATTCTCTCTCTCTTCC 59.294 42.308 0.00 0.00 0.00 3.46
572 639 6.705825 GCTCAAAATATTCTCTCTCTCTTCCC 59.294 42.308 0.00 0.00 0.00 3.97
574 641 7.790027 TCAAAATATTCTCTCTCTCTTCCCTG 58.210 38.462 0.00 0.00 0.00 4.45
594 683 5.186409 CCCTGGAGTTTTGATGATGATTTGT 59.814 40.000 0.00 0.00 0.00 2.83
628 717 8.953223 AACTAATAACTGGTATAGGAGTAGGG 57.047 38.462 0.00 0.00 0.00 3.53
636 725 1.132500 ATAGGAGTAGGGCACTTGGC 58.868 55.000 0.00 0.00 37.72 4.52
641 730 2.092375 GGAGTAGGGCACTTGGCTATTT 60.092 50.000 0.00 0.00 44.01 1.40
642 731 3.135895 GGAGTAGGGCACTTGGCTATTTA 59.864 47.826 0.00 0.00 44.01 1.40
644 733 5.377478 GAGTAGGGCACTTGGCTATTTATT 58.623 41.667 0.00 0.00 44.01 1.40
662 751 9.594038 CTATTTATTTTAGACACACACACACAC 57.406 33.333 0.00 0.00 0.00 3.82
663 752 7.618502 TTTATTTTAGACACACACACACACT 57.381 32.000 0.00 0.00 0.00 3.55
664 753 7.618502 TTATTTTAGACACACACACACACTT 57.381 32.000 0.00 0.00 0.00 3.16
665 754 5.950758 TTTTAGACACACACACACACTTT 57.049 34.783 0.00 0.00 0.00 2.66
666 755 5.539582 TTTAGACACACACACACACTTTC 57.460 39.130 0.00 0.00 0.00 2.62
667 756 2.356135 AGACACACACACACACTTTCC 58.644 47.619 0.00 0.00 0.00 3.13
722 811 4.453177 AAGTCTCTTTTACGGGTAGAGC 57.547 45.455 0.00 0.00 36.27 4.09
723 812 3.428532 AGTCTCTTTTACGGGTAGAGCA 58.571 45.455 0.00 0.00 36.27 4.26
751 840 3.121113 GTGTTGATTTTGTATTGGCACGC 59.879 43.478 0.00 0.00 0.00 5.34
755 844 0.519519 TTTTGTATTGGCACGCGGAG 59.480 50.000 12.47 3.23 0.00 4.63
756 845 0.604243 TTTGTATTGGCACGCGGAGT 60.604 50.000 12.47 0.00 0.00 3.85
764 853 4.420143 CACGCGGAGTGGATTAGG 57.580 61.111 12.47 0.00 46.77 2.69
765 854 1.813859 CACGCGGAGTGGATTAGGA 59.186 57.895 12.47 0.00 46.77 2.94
766 855 0.389391 CACGCGGAGTGGATTAGGAT 59.611 55.000 12.47 0.00 46.77 3.24
767 856 1.120530 ACGCGGAGTGGATTAGGATT 58.879 50.000 12.47 0.00 45.78 3.01
768 857 2.035449 CACGCGGAGTGGATTAGGATTA 59.965 50.000 12.47 0.00 46.77 1.75
775 864 4.503991 GGAGTGGATTAGGATTAGGCAGTG 60.504 50.000 0.00 0.00 0.00 3.66
777 866 4.130118 GTGGATTAGGATTAGGCAGTGTG 58.870 47.826 0.00 0.00 0.00 3.82
784 873 4.677182 AGGATTAGGCAGTGTGGAAAAAT 58.323 39.130 0.00 0.00 0.00 1.82
786 875 6.252995 AGGATTAGGCAGTGTGGAAAAATAA 58.747 36.000 0.00 0.00 0.00 1.40
787 876 6.723977 AGGATTAGGCAGTGTGGAAAAATAAA 59.276 34.615 0.00 0.00 0.00 1.40
789 878 7.093945 GGATTAGGCAGTGTGGAAAAATAAAGA 60.094 37.037 0.00 0.00 0.00 2.52
792 881 6.458210 AGGCAGTGTGGAAAAATAAAGATTG 58.542 36.000 0.00 0.00 0.00 2.67
903 1032 2.191128 AATTCACAGTGAGGGCAGTC 57.809 50.000 2.82 0.00 0.00 3.51
977 1116 3.369576 CCTTTCTCGGCTAAGCTAAACCT 60.370 47.826 0.00 0.00 0.00 3.50
978 1117 3.521947 TTCTCGGCTAAGCTAAACCTC 57.478 47.619 0.00 0.00 0.00 3.85
979 1118 2.453521 TCTCGGCTAAGCTAAACCTCA 58.546 47.619 0.00 0.00 0.00 3.86
980 1119 2.165845 TCTCGGCTAAGCTAAACCTCAC 59.834 50.000 0.00 0.00 0.00 3.51
982 1121 1.207329 CGGCTAAGCTAAACCTCACCT 59.793 52.381 0.00 0.00 0.00 4.00
986 1125 3.055747 GCTAAGCTAAACCTCACCTCACT 60.056 47.826 0.00 0.00 0.00 3.41
987 1126 3.686916 AAGCTAAACCTCACCTCACTC 57.313 47.619 0.00 0.00 0.00 3.51
988 1127 1.546476 AGCTAAACCTCACCTCACTCG 59.454 52.381 0.00 0.00 0.00 4.18
990 1129 1.546476 CTAAACCTCACCTCACTCGCT 59.454 52.381 0.00 0.00 0.00 4.93
992 1131 1.536943 AACCTCACCTCACTCGCTCC 61.537 60.000 0.00 0.00 0.00 4.70
993 1132 1.979155 CCTCACCTCACTCGCTCCA 60.979 63.158 0.00 0.00 0.00 3.86
994 1133 1.214062 CTCACCTCACTCGCTCCAC 59.786 63.158 0.00 0.00 0.00 4.02
995 1134 1.527433 CTCACCTCACTCGCTCCACA 61.527 60.000 0.00 0.00 0.00 4.17
996 1135 1.373497 CACCTCACTCGCTCCACAC 60.373 63.158 0.00 0.00 0.00 3.82
997 1136 2.262915 CCTCACTCGCTCCACACC 59.737 66.667 0.00 0.00 0.00 4.16
998 1137 2.279069 CCTCACTCGCTCCACACCT 61.279 63.158 0.00 0.00 0.00 4.00
1030 1178 4.168088 AGGATAGATAAACCCAAACCCCTG 59.832 45.833 0.00 0.00 0.00 4.45
1032 1180 0.815095 GATAAACCCAAACCCCTGCG 59.185 55.000 0.00 0.00 0.00 5.18
1107 1305 3.264897 CTTCCCCGCGCGATCAAG 61.265 66.667 34.63 23.59 0.00 3.02
1134 1335 0.252761 TTGATCAAGCCATCGGAGCA 59.747 50.000 3.38 0.00 0.00 4.26
1135 1336 0.179065 TGATCAAGCCATCGGAGCAG 60.179 55.000 0.00 0.00 0.00 4.24
1137 1338 1.069204 GATCAAGCCATCGGAGCAGTA 59.931 52.381 0.00 0.00 0.00 2.74
1139 1340 0.176680 CAAGCCATCGGAGCAGTAGT 59.823 55.000 0.00 0.00 0.00 2.73
1140 1341 0.176680 AAGCCATCGGAGCAGTAGTG 59.823 55.000 0.00 0.00 0.00 2.74
1171 1372 4.950062 GCGGCAGCGATCGATCCA 62.950 66.667 21.57 0.00 0.00 3.41
1172 1373 2.048784 CGGCAGCGATCGATCCAT 60.049 61.111 21.57 5.53 0.00 3.41
1350 1587 4.649218 TGTTTCCTTCTTCTTTTCCCCTTG 59.351 41.667 0.00 0.00 0.00 3.61
1367 1615 2.738846 CCTTGTTCGATCTGTCCTGTTG 59.261 50.000 0.00 0.00 0.00 3.33
1388 1636 2.886081 CTGTCGATTCCTCTCCTGTTG 58.114 52.381 0.00 0.00 0.00 3.33
1391 1639 1.478510 TCGATTCCTCTCCTGTTGCTC 59.521 52.381 0.00 0.00 0.00 4.26
1392 1640 1.800655 CGATTCCTCTCCTGTTGCTCG 60.801 57.143 0.00 0.00 0.00 5.03
1395 1643 1.188219 TCCTCTCCTGTTGCTCGCTT 61.188 55.000 0.00 0.00 0.00 4.68
1397 1645 1.075425 CTCTCCTGTTGCTCGCTTCG 61.075 60.000 0.00 0.00 0.00 3.79
1398 1646 2.734673 CTCCTGTTGCTCGCTTCGC 61.735 63.158 0.00 0.00 0.00 4.70
1399 1647 2.740055 CCTGTTGCTCGCTTCGCT 60.740 61.111 0.00 0.00 0.00 4.93
1400 1648 2.473378 CTGTTGCTCGCTTCGCTG 59.527 61.111 0.00 0.00 0.00 5.18
1401 1649 3.642008 CTGTTGCTCGCTTCGCTGC 62.642 63.158 0.00 0.00 0.00 5.25
1410 1658 1.010350 GCTTCGCTGCGATCAATGG 60.010 57.895 26.51 12.26 35.23 3.16
1412 1660 0.729116 CTTCGCTGCGATCAATGGTT 59.271 50.000 26.51 0.00 35.23 3.67
1421 1669 2.797087 GCGATCAATGGTTGAATGCCTG 60.797 50.000 0.00 0.00 43.95 4.85
1428 1676 1.017387 GGTTGAATGCCTGATCCGAC 58.983 55.000 0.00 0.00 0.00 4.79
1430 1678 0.911769 TTGAATGCCTGATCCGACCT 59.088 50.000 0.00 0.00 0.00 3.85
1438 1709 2.680805 GCCTGATCCGACCTGATTTGAA 60.681 50.000 0.00 0.00 0.00 2.69
1449 1720 7.037438 CCGACCTGATTTGAATTGATTTGATT 58.963 34.615 0.00 0.00 0.00 2.57
1468 1739 3.341043 CAGTCGCTGTGCAACGCT 61.341 61.111 6.87 2.61 42.39 5.07
1557 1828 1.541310 AAGAGGGACGACGCCATCAA 61.541 55.000 19.73 0.00 41.05 2.57
1558 1829 1.519455 GAGGGACGACGCCATCAAG 60.519 63.158 14.98 0.00 38.55 3.02
1632 1918 1.151810 AGGAGGAGGACAAGGCCAA 60.152 57.895 5.01 0.00 0.00 4.52
1633 1919 1.204113 AGGAGGAGGACAAGGCCAAG 61.204 60.000 5.01 0.00 0.00 3.61
1634 1920 1.301293 GAGGAGGACAAGGCCAAGG 59.699 63.158 5.01 0.00 0.00 3.61
1635 1921 2.361737 GGAGGACAAGGCCAAGGC 60.362 66.667 5.01 1.52 41.06 4.35
1657 1943 4.214327 GAGGAGAAGGCCGGCGAG 62.214 72.222 22.54 0.00 0.00 5.03
1678 1964 0.972883 AGAAGGCGAGCAAGAAGACT 59.027 50.000 0.00 0.00 0.00 3.24
1682 1968 1.205893 AGGCGAGCAAGAAGACTAAGG 59.794 52.381 0.00 0.00 0.00 2.69
1686 1975 2.535331 GAGCAAGAAGACTAAGGCGAG 58.465 52.381 0.00 0.00 0.00 5.03
1828 2120 0.877649 CCGCCATTCTCCTCATGTCG 60.878 60.000 0.00 0.00 0.00 4.35
1834 2126 1.839424 TTCTCCTCATGTCGCTCTCA 58.161 50.000 0.00 0.00 0.00 3.27
1865 2157 2.847327 ATACGCCTGATCCATCCTTG 57.153 50.000 0.00 0.00 0.00 3.61
1866 2158 1.788229 TACGCCTGATCCATCCTTGA 58.212 50.000 0.00 0.00 0.00 3.02
1872 2188 3.859443 CCTGATCCATCCTTGATCGATC 58.141 50.000 18.72 18.72 41.22 3.69
1939 2264 9.880064 CAAATAATCATCTATGCTATGCTATGC 57.120 33.333 0.00 0.00 0.00 3.14
1940 2265 9.848710 AAATAATCATCTATGCTATGCTATGCT 57.151 29.630 0.00 0.00 0.00 3.79
1946 2271 9.305555 TCATCTATGCTATGCTATGCTATATGA 57.694 33.333 0.00 0.00 0.00 2.15
1962 2287 9.765795 ATGCTATATGATGATGATGATGTAGTG 57.234 33.333 0.00 0.00 0.00 2.74
1963 2288 8.202137 TGCTATATGATGATGATGATGTAGTGG 58.798 37.037 0.00 0.00 0.00 4.00
1969 2294 7.609056 TGATGATGATGATGTAGTGGTAGATG 58.391 38.462 0.00 0.00 0.00 2.90
1987 2312 4.216708 AGATGAGCAACCTACCTACCTAC 58.783 47.826 0.00 0.00 0.00 3.18
1990 2315 3.528905 TGAGCAACCTACCTACCTACCTA 59.471 47.826 0.00 0.00 0.00 3.08
1991 2316 3.888323 GAGCAACCTACCTACCTACCTAC 59.112 52.174 0.00 0.00 0.00 3.18
1992 2317 2.961741 GCAACCTACCTACCTACCTACC 59.038 54.545 0.00 0.00 0.00 3.18
2004 2331 2.423577 CTACCTACCTGTGTTGGTTGC 58.576 52.381 4.27 0.00 46.55 4.17
2020 2348 1.514678 TTGCTGCTGCTTACCGTTGG 61.515 55.000 17.00 0.00 40.48 3.77
2031 2359 3.549423 GCTTACCGTTGGTTCTTTGGTTC 60.549 47.826 0.00 0.00 37.09 3.62
2066 2412 3.326588 TGAGTACCCTGTGCTGTTAATGT 59.673 43.478 0.00 0.00 0.00 2.71
2092 2442 5.587043 TGTCCGTCTGTTTGTTTGTTCTAAT 59.413 36.000 0.00 0.00 0.00 1.73
2133 2493 2.034939 TCTGCAATGCAAAGTGACAAGG 59.965 45.455 9.92 0.00 38.41 3.61
2147 2507 3.938963 GTGACAAGGACAAGTCAAGTCAA 59.061 43.478 17.17 5.65 45.38 3.18
2148 2508 4.034510 GTGACAAGGACAAGTCAAGTCAAG 59.965 45.833 17.17 0.00 45.38 3.02
2149 2509 4.081142 TGACAAGGACAAGTCAAGTCAAGA 60.081 41.667 14.74 0.00 41.42 3.02
2150 2510 4.446371 ACAAGGACAAGTCAAGTCAAGAG 58.554 43.478 2.29 0.00 37.74 2.85
2151 2511 3.118905 AGGACAAGTCAAGTCAAGAGC 57.881 47.619 2.29 0.00 37.74 4.09
2152 2512 2.703007 AGGACAAGTCAAGTCAAGAGCT 59.297 45.455 2.29 0.00 37.74 4.09
2153 2513 3.063485 GGACAAGTCAAGTCAAGAGCTC 58.937 50.000 5.27 5.27 37.74 4.09
2154 2514 3.063485 GACAAGTCAAGTCAAGAGCTCC 58.937 50.000 10.93 0.00 36.06 4.70
2155 2515 2.224402 ACAAGTCAAGTCAAGAGCTCCC 60.224 50.000 10.93 0.00 0.00 4.30
2156 2516 0.980423 AGTCAAGTCAAGAGCTCCCC 59.020 55.000 10.93 0.00 0.00 4.81
2157 2517 0.980423 GTCAAGTCAAGAGCTCCCCT 59.020 55.000 10.93 0.00 0.00 4.79
2158 2518 1.066502 GTCAAGTCAAGAGCTCCCCTC 60.067 57.143 10.93 0.00 41.07 4.30
2159 2519 0.251634 CAAGTCAAGAGCTCCCCTCC 59.748 60.000 10.93 0.00 41.74 4.30
2160 2520 0.912006 AAGTCAAGAGCTCCCCTCCC 60.912 60.000 10.93 0.00 41.74 4.30
2161 2521 2.041265 TCAAGAGCTCCCCTCCCC 59.959 66.667 10.93 0.00 41.74 4.81
2162 2522 2.041928 CAAGAGCTCCCCTCCCCT 59.958 66.667 10.93 0.00 41.74 4.79
2163 2523 2.041928 AAGAGCTCCCCTCCCCTG 59.958 66.667 10.93 0.00 41.74 4.45
2168 2528 3.406200 CTCCCCTCCCCTGTGCTG 61.406 72.222 0.00 0.00 0.00 4.41
2170 2530 4.039092 CCCCTCCCCTGTGCTGTG 62.039 72.222 0.00 0.00 0.00 3.66
2173 2533 2.359602 CTCCCCTGTGCTGTGCTG 60.360 66.667 0.00 0.00 0.00 4.41
2175 2535 2.981909 CCCCTGTGCTGTGCTGTG 60.982 66.667 0.00 0.00 0.00 3.66
2176 2536 3.667282 CCCTGTGCTGTGCTGTGC 61.667 66.667 0.00 0.00 0.00 4.57
2183 2543 1.232621 TGCTGTGCTGTGCTGTGATC 61.233 55.000 0.00 0.00 0.00 2.92
2186 2546 1.397343 CTGTGCTGTGCTGTGATCATC 59.603 52.381 0.00 0.00 0.00 2.92
2191 2551 2.914059 CTGTGCTGTGATCATCCATCA 58.086 47.619 0.00 0.00 39.39 3.07
2201 2561 4.920999 TGATCATCCATCACCTTTTGTCA 58.079 39.130 0.00 0.00 36.51 3.58
2213 2573 5.476599 TCACCTTTTGTCATGTTAATCCTGG 59.523 40.000 0.00 0.00 0.00 4.45
2234 2599 4.824537 TGGCTAGTGTTGCTGTCATTTTAA 59.175 37.500 0.00 0.00 0.00 1.52
2237 2602 6.528072 GGCTAGTGTTGCTGTCATTTTAATTC 59.472 38.462 0.00 0.00 0.00 2.17
2238 2603 7.308435 GCTAGTGTTGCTGTCATTTTAATTCT 58.692 34.615 0.00 0.00 0.00 2.40
2241 2606 7.945134 AGTGTTGCTGTCATTTTAATTCTCTT 58.055 30.769 0.00 0.00 0.00 2.85
2242 2607 8.078596 AGTGTTGCTGTCATTTTAATTCTCTTC 58.921 33.333 0.00 0.00 0.00 2.87
2248 2613 7.149569 TGTCATTTTAATTCTCTTCAGCAGG 57.850 36.000 0.00 0.00 0.00 4.85
2250 2615 5.126061 TCATTTTAATTCTCTTCAGCAGGGC 59.874 40.000 0.00 0.00 0.00 5.19
2252 2617 2.592102 AATTCTCTTCAGCAGGGCAA 57.408 45.000 0.00 0.00 0.00 4.52
2268 2633 1.028868 GCAAAGCAGAGTAGGGCTGG 61.029 60.000 0.00 0.00 40.93 4.85
2287 2655 3.090532 GTAGAGTGGGGCAGGGGG 61.091 72.222 0.00 0.00 0.00 5.40
2352 2739 1.838112 TCCTGTGAATGTGATTGGGC 58.162 50.000 0.00 0.00 0.00 5.36
2353 2740 1.075212 TCCTGTGAATGTGATTGGGCA 59.925 47.619 0.00 0.00 0.00 5.36
2355 2742 2.165167 CTGTGAATGTGATTGGGCACT 58.835 47.619 0.00 0.00 39.49 4.40
2356 2743 1.887854 TGTGAATGTGATTGGGCACTG 59.112 47.619 0.00 0.00 39.49 3.66
2357 2744 1.203052 GTGAATGTGATTGGGCACTGG 59.797 52.381 0.00 0.00 39.49 4.00
2359 2746 2.170166 GAATGTGATTGGGCACTGGAA 58.830 47.619 0.00 0.00 39.49 3.53
2360 2747 1.549203 ATGTGATTGGGCACTGGAAC 58.451 50.000 0.00 0.00 39.49 3.62
2362 2749 0.883833 GTGATTGGGCACTGGAACTG 59.116 55.000 0.00 0.00 35.91 3.16
2363 2750 0.478072 TGATTGGGCACTGGAACTGT 59.522 50.000 0.00 0.00 42.57 3.55
2365 2752 1.270550 GATTGGGCACTGGAACTGTTG 59.729 52.381 0.00 0.00 38.84 3.33
2368 2755 0.890996 GGGCACTGGAACTGTTGAGG 60.891 60.000 0.00 0.00 38.84 3.86
2370 2757 0.947244 GCACTGGAACTGTTGAGGTG 59.053 55.000 0.00 5.05 38.84 4.00
2376 2763 4.102524 ACTGGAACTGTTGAGGTGTATGAA 59.897 41.667 0.00 0.00 37.12 2.57
2382 2769 6.317789 ACTGTTGAGGTGTATGAATGTTTG 57.682 37.500 0.00 0.00 0.00 2.93
2388 2775 7.943079 TGAGGTGTATGAATGTTTGATGATT 57.057 32.000 0.00 0.00 0.00 2.57
2389 2776 7.988737 TGAGGTGTATGAATGTTTGATGATTC 58.011 34.615 0.00 0.00 0.00 2.52
2390 2777 7.611079 TGAGGTGTATGAATGTTTGATGATTCA 59.389 33.333 0.00 0.00 41.58 2.57
2391 2778 7.765307 AGGTGTATGAATGTTTGATGATTCAC 58.235 34.615 0.00 0.00 40.49 3.18
2393 2780 7.912250 GGTGTATGAATGTTTGATGATTCACTC 59.088 37.037 0.00 0.00 40.49 3.51
2397 2784 7.457024 TGAATGTTTGATGATTCACTCATGT 57.543 32.000 0.00 0.00 44.83 3.21
2399 2786 7.810759 TGAATGTTTGATGATTCACTCATGTTG 59.189 33.333 0.00 0.00 44.83 3.33
2401 2788 5.009811 TGTTTGATGATTCACTCATGTTGCA 59.990 36.000 0.00 0.00 44.83 4.08
2402 2789 5.708877 TTGATGATTCACTCATGTTGCAA 57.291 34.783 0.00 0.00 44.83 4.08
2404 2791 5.646606 TGATGATTCACTCATGTTGCAATG 58.353 37.500 0.59 0.00 44.83 2.82
2405 2792 5.416326 TGATGATTCACTCATGTTGCAATGA 59.584 36.000 0.59 1.99 44.83 2.57
2406 2793 5.907866 TGATTCACTCATGTTGCAATGAT 57.092 34.783 0.59 0.00 36.03 2.45
2407 2794 6.275494 TGATTCACTCATGTTGCAATGATT 57.725 33.333 0.59 0.00 36.03 2.57
2408 2795 6.693466 TGATTCACTCATGTTGCAATGATTT 58.307 32.000 0.59 0.00 36.03 2.17
2411 2798 6.335471 TCACTCATGTTGCAATGATTTTCT 57.665 33.333 0.59 0.00 36.03 2.52
2412 2799 6.751157 TCACTCATGTTGCAATGATTTTCTT 58.249 32.000 0.59 0.00 36.03 2.52
2413 2800 7.211573 TCACTCATGTTGCAATGATTTTCTTT 58.788 30.769 0.59 0.00 36.03 2.52
2415 2802 8.007716 CACTCATGTTGCAATGATTTTCTTTTC 58.992 33.333 0.59 0.00 36.03 2.29
2416 2803 7.929785 ACTCATGTTGCAATGATTTTCTTTTCT 59.070 29.630 0.59 0.00 36.03 2.52
2418 2805 9.111613 TCATGTTGCAATGATTTTCTTTTCTTT 57.888 25.926 0.59 0.00 31.58 2.52
2419 2806 9.724839 CATGTTGCAATGATTTTCTTTTCTTTT 57.275 25.926 0.59 0.00 0.00 2.27
2420 2807 9.940166 ATGTTGCAATGATTTTCTTTTCTTTTC 57.060 25.926 0.59 0.00 0.00 2.29
2421 2808 8.944029 TGTTGCAATGATTTTCTTTTCTTTTCA 58.056 25.926 0.59 0.00 0.00 2.69
2422 2809 9.940166 GTTGCAATGATTTTCTTTTCTTTTCAT 57.060 25.926 0.59 0.00 0.00 2.57
2424 2811 8.776470 TGCAATGATTTTCTTTTCTTTTCATCC 58.224 29.630 0.00 0.00 0.00 3.51
2425 2812 8.232513 GCAATGATTTTCTTTTCTTTTCATCCC 58.767 33.333 0.00 0.00 0.00 3.85
2427 2814 9.850198 AATGATTTTCTTTTCTTTTCATCCCAA 57.150 25.926 0.00 0.00 0.00 4.12
2428 2815 9.850198 ATGATTTTCTTTTCTTTTCATCCCAAA 57.150 25.926 0.00 0.00 0.00 3.28
2429 2816 9.328845 TGATTTTCTTTTCTTTTCATCCCAAAG 57.671 29.630 0.00 0.00 33.22 2.77
2430 2817 8.681486 ATTTTCTTTTCTTTTCATCCCAAAGG 57.319 30.769 0.00 0.00 32.86 3.11
2442 2829 2.957474 TCCCAAAGGAAGGAACCAAAG 58.043 47.619 0.00 0.00 40.08 2.77
2443 2830 1.970640 CCCAAAGGAAGGAACCAAAGG 59.029 52.381 0.00 0.00 33.47 3.11
2444 2831 2.425683 CCCAAAGGAAGGAACCAAAGGA 60.426 50.000 0.00 0.00 33.47 3.36
2445 2832 3.304829 CCAAAGGAAGGAACCAAAGGAA 58.695 45.455 0.00 0.00 0.00 3.36
2446 2833 3.903714 CCAAAGGAAGGAACCAAAGGAAT 59.096 43.478 0.00 0.00 0.00 3.01
2447 2834 4.262592 CCAAAGGAAGGAACCAAAGGAATG 60.263 45.833 0.00 0.00 0.00 2.67
2448 2835 4.469469 AAGGAAGGAACCAAAGGAATGA 57.531 40.909 0.00 0.00 0.00 2.57
2485 2924 4.984146 AAGAAAGGAGGAGCAGTAAAGT 57.016 40.909 0.00 0.00 0.00 2.66
2511 2980 1.209019 AGTCAGCCATCGATGCTTCTT 59.791 47.619 20.25 5.64 36.81 2.52
2520 2989 0.374063 CGATGCTTCTTCTGCTGCTG 59.626 55.000 0.00 0.00 0.00 4.41
2521 2990 1.451067 GATGCTTCTTCTGCTGCTGT 58.549 50.000 0.00 0.00 0.00 4.40
2522 2991 1.811359 GATGCTTCTTCTGCTGCTGTT 59.189 47.619 0.00 0.00 0.00 3.16
2523 2992 1.683943 TGCTTCTTCTGCTGCTGTTT 58.316 45.000 0.00 0.00 0.00 2.83
2524 2993 2.849942 TGCTTCTTCTGCTGCTGTTTA 58.150 42.857 0.00 0.00 0.00 2.01
2526 2995 2.810852 GCTTCTTCTGCTGCTGTTTAGT 59.189 45.455 0.00 0.00 0.00 2.24
2527 2996 3.120373 GCTTCTTCTGCTGCTGTTTAGTC 60.120 47.826 0.00 0.00 0.00 2.59
2529 2998 4.342862 TCTTCTGCTGCTGTTTAGTCTT 57.657 40.909 0.00 0.00 0.00 3.01
2530 2999 4.708177 TCTTCTGCTGCTGTTTAGTCTTT 58.292 39.130 0.00 0.00 0.00 2.52
2531 3000 5.126067 TCTTCTGCTGCTGTTTAGTCTTTT 58.874 37.500 0.00 0.00 0.00 2.27
2534 3003 5.611374 TCTGCTGCTGTTTAGTCTTTTACT 58.389 37.500 0.00 0.00 42.62 2.24
2535 3004 6.055588 TCTGCTGCTGTTTAGTCTTTTACTT 58.944 36.000 0.00 0.00 39.80 2.24
2555 3024 1.493134 GCACCAGCAAGCAAGCAAAC 61.493 55.000 3.19 0.00 41.58 2.93
2556 3025 0.179105 CACCAGCAAGCAAGCAAACA 60.179 50.000 3.19 0.00 36.85 2.83
2563 3032 1.595794 CAAGCAAGCAAACAAGCAAGG 59.404 47.619 0.00 0.00 36.85 3.61
2565 3034 1.202452 AGCAAGCAAACAAGCAAGGAC 60.202 47.619 0.00 0.00 36.85 3.85
2577 3050 0.034670 GCAAGGACCAGCAGGATCTT 60.035 55.000 0.35 2.02 38.69 2.40
2583 3056 2.484594 GGACCAGCAGGATCTTTCTAGC 60.485 54.545 0.35 0.00 38.69 3.42
2586 3059 3.181456 ACCAGCAGGATCTTTCTAGCATC 60.181 47.826 0.35 0.00 38.69 3.91
2610 3124 2.641305 AGAAATGCTGGAGATGCAGAC 58.359 47.619 5.44 0.00 44.04 3.51
2653 3177 3.339141 AGAATGTTTCTTCTTCGGGAGC 58.661 45.455 0.00 0.00 36.36 4.70
2654 3178 3.008485 AGAATGTTTCTTCTTCGGGAGCT 59.992 43.478 0.00 0.00 36.36 4.09
2669 3193 3.590643 AGCTTGCTTGCTCATCCAT 57.409 47.368 0.00 0.00 39.34 3.41
2673 3197 2.621998 GCTTGCTTGCTCATCCATACAT 59.378 45.455 0.00 0.00 0.00 2.29
2700 3265 1.728426 GCTTTTGTCGCAGCAGCAG 60.728 57.895 0.82 0.00 42.27 4.24
2716 3281 2.295349 CAGCAGCACCAACAATCTTCTT 59.705 45.455 0.00 0.00 0.00 2.52
2717 3282 2.961062 AGCAGCACCAACAATCTTCTTT 59.039 40.909 0.00 0.00 0.00 2.52
2718 3283 4.022935 CAGCAGCACCAACAATCTTCTTTA 60.023 41.667 0.00 0.00 0.00 1.85
2736 3306 8.506437 TCTTCTTTATTTATCTGTGCACTGTTG 58.494 33.333 19.41 5.93 0.00 3.33
2777 3351 2.123632 TGCCTGCCTTCCTCCTCT 59.876 61.111 0.00 0.00 0.00 3.69
2778 3352 1.992277 TGCCTGCCTTCCTCCTCTC 60.992 63.158 0.00 0.00 0.00 3.20
2779 3353 1.992277 GCCTGCCTTCCTCCTCTCA 60.992 63.158 0.00 0.00 0.00 3.27
2783 3357 1.413445 CTGCCTTCCTCCTCTCATCTG 59.587 57.143 0.00 0.00 0.00 2.90
2784 3358 0.106521 GCCTTCCTCCTCTCATCTGC 59.893 60.000 0.00 0.00 0.00 4.26
2786 3360 1.413445 CCTTCCTCCTCTCATCTGCTG 59.587 57.143 0.00 0.00 0.00 4.41
2787 3361 1.413445 CTTCCTCCTCTCATCTGCTGG 59.587 57.143 0.00 0.00 0.00 4.85
2788 3362 0.633378 TCCTCCTCTCATCTGCTGGA 59.367 55.000 0.00 0.00 0.00 3.86
2832 3603 6.183361 ACCCACTTAAACTGTTACCACTATGT 60.183 38.462 0.00 0.00 0.00 2.29
2834 3605 7.879160 CCCACTTAAACTGTTACCACTATGTAA 59.121 37.037 0.00 0.00 0.00 2.41
2877 3648 9.829507 ACTCAACTAGTAGTATGATAAGTACGT 57.170 33.333 2.50 0.00 36.36 3.57
2939 3710 9.909644 TTCTTCTACAACAAAGTATGTAGAGAC 57.090 33.333 13.44 0.00 42.99 3.36
2960 3781 3.181494 ACCAATGTCATGTCATGCGATTG 60.181 43.478 19.82 19.82 0.00 2.67
2965 3786 6.812879 ATGTCATGTCATGCGATTGATTAT 57.187 33.333 8.03 0.00 0.00 1.28
2967 3788 7.727331 TGTCATGTCATGCGATTGATTATAA 57.273 32.000 8.03 0.00 0.00 0.98
2972 3793 9.401873 CATGTCATGCGATTGATTATAAACATT 57.598 29.630 0.00 0.00 0.00 2.71
2974 3795 9.877137 TGTCATGCGATTGATTATAAACATTAC 57.123 29.630 0.00 0.00 0.00 1.89
2975 3796 9.329913 GTCATGCGATTGATTATAAACATTACC 57.670 33.333 0.00 0.00 0.00 2.85
2976 3797 9.061435 TCATGCGATTGATTATAAACATTACCA 57.939 29.630 0.00 0.00 0.00 3.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 0.682209 AATGCTGACTGACCCATGGC 60.682 55.000 6.09 0.00 0.00 4.40
109 133 3.871006 TGTTTTCAGTGTGTCAGTAGCTG 59.129 43.478 0.00 0.00 0.00 4.24
110 134 4.137116 TGTTTTCAGTGTGTCAGTAGCT 57.863 40.909 0.00 0.00 0.00 3.32
123 147 8.898983 AAGCATTTTCATTTTGTTGTTTTCAG 57.101 26.923 0.00 0.00 0.00 3.02
475 515 0.037232 GGAGAGTGTTGGGGAACGAG 60.037 60.000 0.00 0.00 0.00 4.18
478 518 1.671379 GCGGAGAGTGTTGGGGAAC 60.671 63.158 0.00 0.00 0.00 3.62
519 562 3.575687 CCAAGCCAAAGTTTCCTTCATCT 59.424 43.478 0.00 0.00 0.00 2.90
520 563 3.573967 TCCAAGCCAAAGTTTCCTTCATC 59.426 43.478 0.00 0.00 0.00 2.92
521 564 3.575805 TCCAAGCCAAAGTTTCCTTCAT 58.424 40.909 0.00 0.00 0.00 2.57
525 568 2.695147 CAGTTCCAAGCCAAAGTTTCCT 59.305 45.455 0.00 0.00 0.00 3.36
554 621 5.136048 ACTCCAGGGAAGAGAGAGAGAATAT 59.864 44.000 0.00 0.00 35.27 1.28
566 633 4.289410 TCATCATCAAAACTCCAGGGAAGA 59.711 41.667 0.00 0.00 0.00 2.87
568 635 4.656100 TCATCATCAAAACTCCAGGGAA 57.344 40.909 0.00 0.00 0.00 3.97
569 636 4.868172 ATCATCATCAAAACTCCAGGGA 57.132 40.909 0.00 0.00 0.00 4.20
570 637 5.186409 ACAAATCATCATCAAAACTCCAGGG 59.814 40.000 0.00 0.00 0.00 4.45
571 638 6.276832 ACAAATCATCATCAAAACTCCAGG 57.723 37.500 0.00 0.00 0.00 4.45
572 639 9.865321 AATTACAAATCATCATCAAAACTCCAG 57.135 29.630 0.00 0.00 0.00 3.86
605 694 6.952358 TGCCCTACTCCTATACCAGTTATTAG 59.048 42.308 0.00 0.00 0.00 1.73
606 695 6.723052 GTGCCCTACTCCTATACCAGTTATTA 59.277 42.308 0.00 0.00 0.00 0.98
607 696 5.543020 GTGCCCTACTCCTATACCAGTTATT 59.457 44.000 0.00 0.00 0.00 1.40
612 701 3.246416 AGTGCCCTACTCCTATACCAG 57.754 52.381 0.00 0.00 33.17 4.00
615 704 2.037381 GCCAAGTGCCCTACTCCTATAC 59.963 54.545 0.00 0.00 39.18 1.47
627 716 6.972901 GTGTCTAAAATAAATAGCCAAGTGCC 59.027 38.462 0.00 0.00 42.71 5.01
628 717 7.484959 GTGTGTCTAAAATAAATAGCCAAGTGC 59.515 37.037 0.00 0.00 41.71 4.40
636 725 9.594038 GTGTGTGTGTGTGTCTAAAATAAATAG 57.406 33.333 0.00 0.00 0.00 1.73
641 730 7.201661 GGAAAGTGTGTGTGTGTGTCTAAAATA 60.202 37.037 0.00 0.00 0.00 1.40
642 731 6.404293 GGAAAGTGTGTGTGTGTGTCTAAAAT 60.404 38.462 0.00 0.00 0.00 1.82
644 733 4.393680 GGAAAGTGTGTGTGTGTGTCTAAA 59.606 41.667 0.00 0.00 0.00 1.85
704 793 4.877378 TTTGCTCTACCCGTAAAAGAGA 57.123 40.909 2.86 0.00 39.29 3.10
705 794 5.106673 CCTTTTTGCTCTACCCGTAAAAGAG 60.107 44.000 0.00 0.00 39.81 2.85
707 796 4.517832 ACCTTTTTGCTCTACCCGTAAAAG 59.482 41.667 0.00 0.00 34.20 2.27
708 797 4.276431 CACCTTTTTGCTCTACCCGTAAAA 59.724 41.667 0.00 0.00 0.00 1.52
709 798 3.816523 CACCTTTTTGCTCTACCCGTAAA 59.183 43.478 0.00 0.00 0.00 2.01
710 799 3.181452 ACACCTTTTTGCTCTACCCGTAA 60.181 43.478 0.00 0.00 0.00 3.18
711 800 2.369532 ACACCTTTTTGCTCTACCCGTA 59.630 45.455 0.00 0.00 0.00 4.02
712 801 1.142262 ACACCTTTTTGCTCTACCCGT 59.858 47.619 0.00 0.00 0.00 5.28
713 802 1.892209 ACACCTTTTTGCTCTACCCG 58.108 50.000 0.00 0.00 0.00 5.28
714 803 3.219281 TCAACACCTTTTTGCTCTACCC 58.781 45.455 0.00 0.00 0.00 3.69
715 804 5.453567 AATCAACACCTTTTTGCTCTACC 57.546 39.130 0.00 0.00 0.00 3.18
716 805 6.756542 ACAAAATCAACACCTTTTTGCTCTAC 59.243 34.615 7.14 0.00 41.69 2.59
717 806 6.872920 ACAAAATCAACACCTTTTTGCTCTA 58.127 32.000 7.14 0.00 41.69 2.43
718 807 5.733676 ACAAAATCAACACCTTTTTGCTCT 58.266 33.333 7.14 0.00 41.69 4.09
719 808 7.713764 ATACAAAATCAACACCTTTTTGCTC 57.286 32.000 7.14 0.00 41.69 4.26
720 809 7.012232 CCAATACAAAATCAACACCTTTTTGCT 59.988 33.333 7.14 0.00 41.69 3.91
721 810 7.131565 CCAATACAAAATCAACACCTTTTTGC 58.868 34.615 7.14 0.00 41.69 3.68
722 811 7.131565 GCCAATACAAAATCAACACCTTTTTG 58.868 34.615 5.96 5.96 42.93 2.44
723 812 6.825721 TGCCAATACAAAATCAACACCTTTTT 59.174 30.769 0.00 0.00 0.00 1.94
751 840 2.632996 TGCCTAATCCTAATCCACTCCG 59.367 50.000 0.00 0.00 0.00 4.63
755 844 4.130118 CACACTGCCTAATCCTAATCCAC 58.870 47.826 0.00 0.00 0.00 4.02
756 845 3.136443 CCACACTGCCTAATCCTAATCCA 59.864 47.826 0.00 0.00 0.00 3.41
757 846 3.391296 TCCACACTGCCTAATCCTAATCC 59.609 47.826 0.00 0.00 0.00 3.01
760 849 4.919774 TTTCCACACTGCCTAATCCTAA 57.080 40.909 0.00 0.00 0.00 2.69
761 850 4.919774 TTTTCCACACTGCCTAATCCTA 57.080 40.909 0.00 0.00 0.00 2.94
762 851 3.806949 TTTTCCACACTGCCTAATCCT 57.193 42.857 0.00 0.00 0.00 3.24
763 852 6.524101 TTATTTTTCCACACTGCCTAATCC 57.476 37.500 0.00 0.00 0.00 3.01
764 853 7.826690 TCTTTATTTTTCCACACTGCCTAATC 58.173 34.615 0.00 0.00 0.00 1.75
765 854 7.775053 TCTTTATTTTTCCACACTGCCTAAT 57.225 32.000 0.00 0.00 0.00 1.73
766 855 7.775053 ATCTTTATTTTTCCACACTGCCTAA 57.225 32.000 0.00 0.00 0.00 2.69
767 856 7.232534 ACAATCTTTATTTTTCCACACTGCCTA 59.767 33.333 0.00 0.00 0.00 3.93
768 857 6.041979 ACAATCTTTATTTTTCCACACTGCCT 59.958 34.615 0.00 0.00 0.00 4.75
813 933 4.182433 TGGTGCTGCACGGGTTCA 62.182 61.111 24.86 14.61 34.83 3.18
828 948 1.156736 ACCGATTCAACGCTTTCTGG 58.843 50.000 0.00 0.00 0.00 3.86
903 1032 4.295119 CCCTAATCGCGACCCCCG 62.295 72.222 12.93 0.00 42.21 5.73
977 1116 1.530655 TGTGGAGCGAGTGAGGTGA 60.531 57.895 0.00 0.00 0.00 4.02
978 1117 1.373497 GTGTGGAGCGAGTGAGGTG 60.373 63.158 0.00 0.00 0.00 4.00
979 1118 2.574955 GGTGTGGAGCGAGTGAGGT 61.575 63.158 0.00 0.00 0.00 3.85
980 1119 2.219325 GAGGTGTGGAGCGAGTGAGG 62.219 65.000 0.00 0.00 0.00 3.86
982 1121 1.527433 CTGAGGTGTGGAGCGAGTGA 61.527 60.000 0.00 0.00 0.00 3.41
986 1125 2.640302 GCTCTGAGGTGTGGAGCGA 61.640 63.158 6.83 0.00 42.03 4.93
987 1126 2.125753 GCTCTGAGGTGTGGAGCG 60.126 66.667 6.83 0.00 42.03 5.03
990 1129 0.902048 CCTCTGCTCTGAGGTGTGGA 60.902 60.000 6.83 0.00 46.33 4.02
997 1136 5.047377 GGGTTTATCTATCCTCTGCTCTGAG 60.047 48.000 0.00 0.00 0.00 3.35
998 1137 4.835615 GGGTTTATCTATCCTCTGCTCTGA 59.164 45.833 0.00 0.00 0.00 3.27
1010 1149 3.687264 CGCAGGGGTTTGGGTTTATCTAT 60.687 47.826 0.00 0.00 0.00 1.98
1011 1150 2.356330 CGCAGGGGTTTGGGTTTATCTA 60.356 50.000 0.00 0.00 0.00 1.98
1012 1151 1.615919 CGCAGGGGTTTGGGTTTATCT 60.616 52.381 0.00 0.00 0.00 1.98
1030 1178 1.582610 TTTGGTTCGAATGGAGGCGC 61.583 55.000 0.00 0.00 0.00 6.53
1032 1180 0.526211 GGTTTGGTTCGAATGGAGGC 59.474 55.000 0.00 0.00 0.00 4.70
1125 1323 1.227380 GGCCACTACTGCTCCGATG 60.227 63.158 0.00 0.00 0.00 3.84
1126 1324 2.786495 CGGCCACTACTGCTCCGAT 61.786 63.158 2.24 0.00 42.43 4.18
1128 1326 2.685387 GATCGGCCACTACTGCTCCG 62.685 65.000 2.24 0.00 41.30 4.63
1152 1353 2.255554 GATCGATCGCTGCCGCTA 59.744 61.111 11.09 0.00 0.00 4.26
1153 1354 4.654412 GGATCGATCGCTGCCGCT 62.654 66.667 18.81 0.00 0.00 5.52
1154 1355 2.819117 TATGGATCGATCGCTGCCGC 62.819 60.000 18.81 4.13 0.00 6.53
1155 1356 0.799917 CTATGGATCGATCGCTGCCG 60.800 60.000 18.81 2.02 0.00 5.69
1157 1358 2.191802 CATCTATGGATCGATCGCTGC 58.808 52.381 18.81 6.92 0.00 5.25
1158 1359 3.433709 GACATCTATGGATCGATCGCTG 58.566 50.000 18.81 9.34 0.00 5.18
1159 1360 2.096657 CGACATCTATGGATCGATCGCT 59.903 50.000 18.81 10.91 0.00 4.93
1160 1361 2.445316 CGACATCTATGGATCGATCGC 58.555 52.381 18.81 12.27 0.00 4.58
1161 1362 2.445316 GCGACATCTATGGATCGATCG 58.555 52.381 18.81 9.36 0.00 3.69
1162 1363 2.792890 CGGCGACATCTATGGATCGATC 60.793 54.545 17.36 17.36 0.00 3.69
1163 1364 1.133216 CGGCGACATCTATGGATCGAT 59.867 52.381 0.00 0.00 0.00 3.59
1164 1365 0.521735 CGGCGACATCTATGGATCGA 59.478 55.000 0.00 0.00 0.00 3.59
1165 1366 0.456824 CCGGCGACATCTATGGATCG 60.457 60.000 9.30 0.00 0.00 3.69
1167 1368 1.293498 GCCGGCGACATCTATGGAT 59.707 57.895 12.58 0.00 0.00 3.41
1168 1369 2.734591 GCCGGCGACATCTATGGA 59.265 61.111 12.58 0.00 0.00 3.41
1169 1370 2.734723 CGCCGGCGACATCTATGG 60.735 66.667 44.86 10.04 42.83 2.74
1350 1587 1.728971 CAGCAACAGGACAGATCGAAC 59.271 52.381 0.00 0.00 0.00 3.95
1367 1615 0.820871 ACAGGAGAGGAATCGACAGC 59.179 55.000 0.00 0.00 0.00 4.40
1395 1643 0.390998 TCAACCATTGATCGCAGCGA 60.391 50.000 22.06 22.06 41.13 4.93
1397 1645 2.456989 CATTCAACCATTGATCGCAGC 58.543 47.619 0.00 0.00 39.84 5.25
1398 1646 2.456989 GCATTCAACCATTGATCGCAG 58.543 47.619 7.48 0.00 39.84 5.18
1399 1647 1.134753 GGCATTCAACCATTGATCGCA 59.865 47.619 12.19 0.00 39.84 5.10
1400 1648 1.406539 AGGCATTCAACCATTGATCGC 59.593 47.619 0.00 0.00 39.84 4.58
1401 1649 2.684374 TCAGGCATTCAACCATTGATCG 59.316 45.455 0.00 0.00 39.84 3.69
1402 1650 4.261909 GGATCAGGCATTCAACCATTGATC 60.262 45.833 0.00 3.61 39.84 2.92
1403 1651 3.640029 GGATCAGGCATTCAACCATTGAT 59.360 43.478 0.00 0.00 39.84 2.57
1404 1652 3.025978 GGATCAGGCATTCAACCATTGA 58.974 45.455 0.00 0.00 38.04 2.57
1405 1653 2.223641 CGGATCAGGCATTCAACCATTG 60.224 50.000 0.00 0.00 0.00 2.82
1406 1654 2.026641 CGGATCAGGCATTCAACCATT 58.973 47.619 0.00 0.00 0.00 3.16
1407 1655 1.212688 TCGGATCAGGCATTCAACCAT 59.787 47.619 0.00 0.00 0.00 3.55
1408 1656 0.617935 TCGGATCAGGCATTCAACCA 59.382 50.000 0.00 0.00 0.00 3.67
1410 1658 1.017387 GGTCGGATCAGGCATTCAAC 58.983 55.000 0.00 0.00 0.00 3.18
1412 1660 0.178767 CAGGTCGGATCAGGCATTCA 59.821 55.000 0.00 0.00 0.00 2.57
1421 1669 6.382869 AATCAATTCAAATCAGGTCGGATC 57.617 37.500 0.00 0.00 0.00 3.36
1428 1676 7.333423 ACTGCAATCAAATCAATTCAAATCAGG 59.667 33.333 0.00 0.00 0.00 3.86
1430 1678 7.062488 CGACTGCAATCAAATCAATTCAAATCA 59.938 33.333 0.00 0.00 0.00 2.57
1438 1709 3.192001 ACAGCGACTGCAATCAAATCAAT 59.808 39.130 0.00 0.00 46.23 2.57
1449 1720 3.639008 CGTTGCACAGCGACTGCA 61.639 61.111 0.13 2.29 46.23 4.41
1468 1739 3.840594 CGGTACCGGATCCCGCAA 61.841 66.667 27.00 0.00 46.86 4.85
1583 1869 1.452833 CCTTGCTAGAAGCCTGGGC 60.453 63.158 3.00 3.00 41.51 5.36
1584 1870 0.179936 CTCCTTGCTAGAAGCCTGGG 59.820 60.000 0.00 0.00 41.51 4.45
1585 1871 0.179936 CCTCCTTGCTAGAAGCCTGG 59.820 60.000 0.00 0.00 41.51 4.45
1586 1872 1.138661 CTCCTCCTTGCTAGAAGCCTG 59.861 57.143 0.00 0.00 41.51 4.85
1587 1873 1.494960 CTCCTCCTTGCTAGAAGCCT 58.505 55.000 0.00 0.00 41.51 4.58
1588 1874 0.467804 CCTCCTCCTTGCTAGAAGCC 59.532 60.000 0.00 0.00 41.51 4.35
1589 1875 1.412343 CTCCTCCTCCTTGCTAGAAGC 59.588 57.143 0.00 0.00 42.82 3.86
1592 1878 1.216678 CTCCTCCTCCTCCTTGCTAGA 59.783 57.143 0.00 0.00 0.00 2.43
1596 1882 1.002274 TCCTCCTCCTCCTCCTTGC 59.998 63.158 0.00 0.00 0.00 4.01
1640 1926 4.214327 CTCGCCGGCCTTCTCCTC 62.214 72.222 23.46 0.00 0.00 3.71
1643 1929 4.214327 CTCCTCGCCGGCCTTCTC 62.214 72.222 23.46 0.00 0.00 2.87
1653 1939 3.649277 TTGCTCGCCTTCTCCTCGC 62.649 63.158 0.00 0.00 0.00 5.03
1657 1943 0.247736 TCTTCTTGCTCGCCTTCTCC 59.752 55.000 0.00 0.00 0.00 3.71
1667 1953 1.205893 CCTCGCCTTAGTCTTCTTGCT 59.794 52.381 0.00 0.00 0.00 3.91
1668 1954 1.204941 TCCTCGCCTTAGTCTTCTTGC 59.795 52.381 0.00 0.00 0.00 4.01
1686 1975 3.698463 CAACGGTGTGCGTCGTCC 61.698 66.667 0.00 0.00 38.78 4.79
1720 2009 2.978010 ACCGCGTCCTTGGCAAAG 60.978 61.111 4.92 0.00 0.00 2.77
1762 2054 3.376935 CTTCCTCCGCCGCATCTGT 62.377 63.158 0.00 0.00 0.00 3.41
1816 2108 1.952990 GATGAGAGCGACATGAGGAGA 59.047 52.381 0.00 0.00 0.00 3.71
1828 2120 4.099120 CGTATATTACGCCTGATGAGAGC 58.901 47.826 0.00 0.00 45.81 4.09
1866 2158 5.595952 TCATATTCATCAGGGATCGATCGAT 59.404 40.000 29.76 29.76 37.59 3.59
1872 2188 5.046735 ACCTCTTCATATTCATCAGGGATCG 60.047 44.000 0.00 0.00 0.00 3.69
1879 2195 6.375174 CCAACAACACCTCTTCATATTCATCA 59.625 38.462 0.00 0.00 0.00 3.07
1938 2263 8.202811 ACCACTACATCATCATCATCATATAGC 58.797 37.037 0.00 0.00 0.00 2.97
1941 2266 9.484806 TCTACCACTACATCATCATCATCATAT 57.515 33.333 0.00 0.00 0.00 1.78
1942 2267 8.884124 TCTACCACTACATCATCATCATCATA 57.116 34.615 0.00 0.00 0.00 2.15
1943 2268 7.787623 TCTACCACTACATCATCATCATCAT 57.212 36.000 0.00 0.00 0.00 2.45
1944 2269 7.452501 TCATCTACCACTACATCATCATCATCA 59.547 37.037 0.00 0.00 0.00 3.07
1945 2270 7.834803 TCATCTACCACTACATCATCATCATC 58.165 38.462 0.00 0.00 0.00 2.92
1946 2271 7.579146 GCTCATCTACCACTACATCATCATCAT 60.579 40.741 0.00 0.00 0.00 2.45
1947 2272 6.294955 GCTCATCTACCACTACATCATCATCA 60.295 42.308 0.00 0.00 0.00 3.07
1948 2273 6.098679 GCTCATCTACCACTACATCATCATC 58.901 44.000 0.00 0.00 0.00 2.92
1963 2288 4.216708 AGGTAGGTAGGTTGCTCATCTAC 58.783 47.826 0.00 0.00 34.31 2.59
1969 2294 3.029483 AGGTAGGTAGGTAGGTTGCTC 57.971 52.381 0.00 0.00 0.00 4.26
1987 2312 1.238439 CAGCAACCAACACAGGTAGG 58.762 55.000 0.00 0.00 42.25 3.18
1990 2315 1.076777 AGCAGCAACCAACACAGGT 60.077 52.632 0.00 0.00 45.91 4.00
1991 2316 1.361271 CAGCAGCAACCAACACAGG 59.639 57.895 0.00 0.00 0.00 4.00
1992 2317 1.299620 GCAGCAGCAACCAACACAG 60.300 57.895 0.00 0.00 41.58 3.66
2004 2331 0.517316 GAACCAACGGTAAGCAGCAG 59.483 55.000 0.00 0.00 33.12 4.24
2020 2348 4.209307 AGCTAGCTAGGAACCAAAGAAC 57.791 45.455 17.69 0.96 0.00 3.01
2066 2412 2.980568 ACAAACAAACAGACGGACAGA 58.019 42.857 0.00 0.00 0.00 3.41
2092 2442 6.127563 TGCAGATTAAGTCAGACGGTACATAA 60.128 38.462 0.00 0.00 0.00 1.90
2133 2493 3.063485 GGAGCTCTTGACTTGACTTGTC 58.937 50.000 14.64 0.00 35.21 3.18
2147 2507 3.288381 ACAGGGGAGGGGAGCTCT 61.288 66.667 14.64 0.00 0.00 4.09
2148 2508 3.086600 CACAGGGGAGGGGAGCTC 61.087 72.222 4.71 4.71 0.00 4.09
2151 2511 3.406200 CAGCACAGGGGAGGGGAG 61.406 72.222 0.00 0.00 0.00 4.30
2152 2512 4.270153 ACAGCACAGGGGAGGGGA 62.270 66.667 0.00 0.00 0.00 4.81
2153 2513 4.039092 CACAGCACAGGGGAGGGG 62.039 72.222 0.00 0.00 0.00 4.79
2154 2514 4.729918 GCACAGCACAGGGGAGGG 62.730 72.222 0.00 0.00 0.00 4.30
2155 2515 3.644606 AGCACAGCACAGGGGAGG 61.645 66.667 0.00 0.00 0.00 4.30
2156 2516 2.359602 CAGCACAGCACAGGGGAG 60.360 66.667 0.00 0.00 0.00 4.30
2157 2517 3.170672 ACAGCACAGCACAGGGGA 61.171 61.111 0.00 0.00 0.00 4.81
2158 2518 2.981909 CACAGCACAGCACAGGGG 60.982 66.667 0.00 0.00 0.00 4.79
2159 2519 3.667282 GCACAGCACAGCACAGGG 61.667 66.667 0.00 0.00 0.00 4.45
2160 2520 2.593725 AGCACAGCACAGCACAGG 60.594 61.111 0.00 0.00 0.00 4.00
2161 2521 2.184830 ACAGCACAGCACAGCACAG 61.185 57.895 0.00 0.00 0.00 3.66
2162 2522 2.124612 ACAGCACAGCACAGCACA 60.125 55.556 0.00 0.00 0.00 4.57
2163 2523 1.512996 ATCACAGCACAGCACAGCAC 61.513 55.000 0.00 0.00 0.00 4.40
2168 2528 0.731417 GGATGATCACAGCACAGCAC 59.269 55.000 0.00 0.00 33.73 4.40
2170 2530 1.602851 GATGGATGATCACAGCACAGC 59.397 52.381 0.00 0.00 33.73 4.40
2183 2543 5.395682 AACATGACAAAAGGTGATGGATG 57.604 39.130 0.00 0.00 44.34 3.51
2186 2546 6.153340 AGGATTAACATGACAAAAGGTGATGG 59.847 38.462 0.00 0.00 44.34 3.51
2191 2551 4.220602 GCCAGGATTAACATGACAAAAGGT 59.779 41.667 0.00 0.00 31.40 3.50
2192 2552 4.463891 AGCCAGGATTAACATGACAAAAGG 59.536 41.667 0.00 0.00 31.40 3.11
2193 2553 5.649782 AGCCAGGATTAACATGACAAAAG 57.350 39.130 0.00 0.00 31.40 2.27
2194 2554 6.150976 CACTAGCCAGGATTAACATGACAAAA 59.849 38.462 0.00 0.00 31.40 2.44
2196 2556 5.185454 CACTAGCCAGGATTAACATGACAA 58.815 41.667 0.00 0.00 31.40 3.18
2197 2557 4.225042 ACACTAGCCAGGATTAACATGACA 59.775 41.667 0.00 0.00 31.40 3.58
2198 2558 4.770795 ACACTAGCCAGGATTAACATGAC 58.229 43.478 0.00 0.00 31.40 3.06
2199 2559 5.185454 CAACACTAGCCAGGATTAACATGA 58.815 41.667 0.00 0.00 31.40 3.07
2200 2560 4.201950 GCAACACTAGCCAGGATTAACATG 60.202 45.833 0.00 0.00 0.00 3.21
2201 2561 3.947834 GCAACACTAGCCAGGATTAACAT 59.052 43.478 0.00 0.00 0.00 2.71
2213 2573 7.308435 AGAATTAAAATGACAGCAACACTAGC 58.692 34.615 0.00 0.00 0.00 3.42
2234 2599 2.444421 CTTTGCCCTGCTGAAGAGAAT 58.556 47.619 0.00 0.00 0.00 2.40
2237 2602 0.892358 TGCTTTGCCCTGCTGAAGAG 60.892 55.000 0.00 0.00 0.00 2.85
2238 2603 0.892358 CTGCTTTGCCCTGCTGAAGA 60.892 55.000 0.00 0.00 0.00 2.87
2241 2606 1.303074 CTCTGCTTTGCCCTGCTGA 60.303 57.895 0.00 0.00 36.15 4.26
2242 2607 0.321919 TACTCTGCTTTGCCCTGCTG 60.322 55.000 0.00 0.00 0.00 4.41
2248 2613 1.028868 CAGCCCTACTCTGCTTTGCC 61.029 60.000 0.00 0.00 35.12 4.52
2250 2615 0.615331 TCCAGCCCTACTCTGCTTTG 59.385 55.000 0.00 0.00 35.12 2.77
2252 2617 0.252467 ACTCCAGCCCTACTCTGCTT 60.252 55.000 0.00 0.00 35.12 3.91
2268 2633 2.066999 CCCCTGCCCCACTCTACTC 61.067 68.421 0.00 0.00 0.00 2.59
2287 2655 2.408271 TCATCACCTCTTGCATCACC 57.592 50.000 0.00 0.00 0.00 4.02
2288 2656 3.538591 TGATCATCACCTCTTGCATCAC 58.461 45.455 0.00 0.00 0.00 3.06
2313 2681 7.870954 CACAGGAATGGAATGGAATTAATGATG 59.129 37.037 0.00 0.00 36.07 3.07
2314 2682 7.785985 TCACAGGAATGGAATGGAATTAATGAT 59.214 33.333 0.00 0.00 36.07 2.45
2315 2683 7.124721 TCACAGGAATGGAATGGAATTAATGA 58.875 34.615 0.00 0.00 36.07 2.57
2316 2684 7.350744 TCACAGGAATGGAATGGAATTAATG 57.649 36.000 0.00 0.00 36.07 1.90
2317 2685 7.976414 TTCACAGGAATGGAATGGAATTAAT 57.024 32.000 0.00 0.00 36.07 1.40
2347 2734 0.257328 TCAACAGTTCCAGTGCCCAA 59.743 50.000 0.00 0.00 0.00 4.12
2349 2736 0.890996 CCTCAACAGTTCCAGTGCCC 60.891 60.000 0.00 0.00 0.00 5.36
2351 2738 0.947244 CACCTCAACAGTTCCAGTGC 59.053 55.000 0.00 0.00 0.00 4.40
2352 2739 2.332063 ACACCTCAACAGTTCCAGTG 57.668 50.000 5.07 5.07 0.00 3.66
2353 2740 3.646162 TCATACACCTCAACAGTTCCAGT 59.354 43.478 0.00 0.00 0.00 4.00
2355 2742 4.698201 TTCATACACCTCAACAGTTCCA 57.302 40.909 0.00 0.00 0.00 3.53
2356 2743 5.003804 ACATTCATACACCTCAACAGTTCC 58.996 41.667 0.00 0.00 0.00 3.62
2357 2744 6.560253 AACATTCATACACCTCAACAGTTC 57.440 37.500 0.00 0.00 0.00 3.01
2359 2746 6.061441 TCAAACATTCATACACCTCAACAGT 58.939 36.000 0.00 0.00 0.00 3.55
2360 2747 6.558771 TCAAACATTCATACACCTCAACAG 57.441 37.500 0.00 0.00 0.00 3.16
2362 2749 7.144722 TCATCAAACATTCATACACCTCAAC 57.855 36.000 0.00 0.00 0.00 3.18
2363 2750 7.943079 ATCATCAAACATTCATACACCTCAA 57.057 32.000 0.00 0.00 0.00 3.02
2365 2752 7.912250 GTGAATCATCAAACATTCATACACCTC 59.088 37.037 0.00 0.00 40.33 3.85
2368 2755 8.453320 TGAGTGAATCATCAAACATTCATACAC 58.547 33.333 0.00 0.00 40.33 2.90
2370 2757 9.447040 CATGAGTGAATCATCAAACATTCATAC 57.553 33.333 0.00 0.00 46.01 2.39
2376 2763 6.097356 GCAACATGAGTGAATCATCAAACAT 58.903 36.000 0.00 0.00 46.01 2.71
2382 2769 5.886992 TCATTGCAACATGAGTGAATCATC 58.113 37.500 0.00 0.00 46.01 2.92
2388 2775 6.335471 AGAAAATCATTGCAACATGAGTGA 57.665 33.333 0.00 0.00 0.00 3.41
2389 2776 7.416154 AAAGAAAATCATTGCAACATGAGTG 57.584 32.000 0.00 0.00 0.00 3.51
2390 2777 7.929785 AGAAAAGAAAATCATTGCAACATGAGT 59.070 29.630 0.00 0.00 0.00 3.41
2391 2778 8.306680 AGAAAAGAAAATCATTGCAACATGAG 57.693 30.769 0.00 0.00 0.00 2.90
2393 2780 9.724839 AAAAGAAAAGAAAATCATTGCAACATG 57.275 25.926 0.00 0.00 0.00 3.21
2399 2786 8.232513 GGGATGAAAAGAAAAGAAAATCATTGC 58.767 33.333 0.00 0.00 0.00 3.56
2401 2788 9.850198 TTGGGATGAAAAGAAAAGAAAATCATT 57.150 25.926 0.00 0.00 0.00 2.57
2402 2789 9.850198 TTTGGGATGAAAAGAAAAGAAAATCAT 57.150 25.926 0.00 0.00 0.00 2.45
2404 2791 8.777413 CCTTTGGGATGAAAAGAAAAGAAAATC 58.223 33.333 0.00 0.00 36.88 2.17
2405 2792 8.493607 TCCTTTGGGATGAAAAGAAAAGAAAAT 58.506 29.630 0.00 0.00 36.88 1.82
2406 2793 7.856415 TCCTTTGGGATGAAAAGAAAAGAAAA 58.144 30.769 0.00 0.00 36.88 2.29
2407 2794 7.430760 TCCTTTGGGATGAAAAGAAAAGAAA 57.569 32.000 0.00 0.00 36.88 2.52
2408 2795 7.418942 CCTTCCTTTGGGATGAAAAGAAAAGAA 60.419 37.037 10.18 0.00 41.87 2.52
2411 2798 5.902431 TCCTTCCTTTGGGATGAAAAGAAAA 59.098 36.000 0.00 0.00 41.87 2.29
2412 2799 5.463154 TCCTTCCTTTGGGATGAAAAGAAA 58.537 37.500 0.00 0.00 41.87 2.52
2413 2800 5.073437 TCCTTCCTTTGGGATGAAAAGAA 57.927 39.130 0.00 0.00 41.87 2.52
2415 2802 4.021104 GGTTCCTTCCTTTGGGATGAAAAG 60.021 45.833 0.00 0.00 41.87 2.27
2416 2803 3.901222 GGTTCCTTCCTTTGGGATGAAAA 59.099 43.478 0.00 0.00 41.87 2.29
2418 2805 2.448961 TGGTTCCTTCCTTTGGGATGAA 59.551 45.455 0.00 0.00 41.87 2.57
2419 2806 2.069775 TGGTTCCTTCCTTTGGGATGA 58.930 47.619 0.00 0.00 41.87 2.92
2420 2807 2.603075 TGGTTCCTTCCTTTGGGATG 57.397 50.000 0.00 0.00 41.87 3.51
2421 2808 3.510459 CTTTGGTTCCTTCCTTTGGGAT 58.490 45.455 0.00 0.00 41.87 3.85
2422 2809 2.425683 CCTTTGGTTCCTTCCTTTGGGA 60.426 50.000 0.00 0.00 40.36 4.37
2424 2811 2.957474 TCCTTTGGTTCCTTCCTTTGG 58.043 47.619 0.00 0.00 0.00 3.28
2425 2812 4.588528 TCATTCCTTTGGTTCCTTCCTTTG 59.411 41.667 0.00 0.00 0.00 2.77
2427 2814 4.469469 TCATTCCTTTGGTTCCTTCCTT 57.531 40.909 0.00 0.00 0.00 3.36
2428 2815 4.140924 AGTTCATTCCTTTGGTTCCTTCCT 60.141 41.667 0.00 0.00 0.00 3.36
2429 2816 4.152647 AGTTCATTCCTTTGGTTCCTTCC 58.847 43.478 0.00 0.00 0.00 3.46
2430 2817 5.509670 CCAAGTTCATTCCTTTGGTTCCTTC 60.510 44.000 0.00 0.00 36.25 3.46
2431 2818 4.344968 CCAAGTTCATTCCTTTGGTTCCTT 59.655 41.667 0.00 0.00 36.25 3.36
2432 2819 3.897505 CCAAGTTCATTCCTTTGGTTCCT 59.102 43.478 0.00 0.00 36.25 3.36
2433 2820 3.895041 TCCAAGTTCATTCCTTTGGTTCC 59.105 43.478 2.43 0.00 40.68 3.62
2434 2821 5.529581 TTCCAAGTTCATTCCTTTGGTTC 57.470 39.130 2.43 0.00 40.68 3.62
2435 2822 5.660864 TCTTTCCAAGTTCATTCCTTTGGTT 59.339 36.000 2.43 0.00 40.68 3.67
2436 2823 5.208121 TCTTTCCAAGTTCATTCCTTTGGT 58.792 37.500 2.43 0.00 40.68 3.67
2437 2824 5.789643 TCTTTCCAAGTTCATTCCTTTGG 57.210 39.130 0.00 0.00 41.09 3.28
2438 2825 7.491682 TCTTTCTTTCCAAGTTCATTCCTTTG 58.508 34.615 0.00 0.00 0.00 2.77
2439 2826 7.660030 TCTTTCTTTCCAAGTTCATTCCTTT 57.340 32.000 0.00 0.00 0.00 3.11
2440 2827 7.660030 TTCTTTCTTTCCAAGTTCATTCCTT 57.340 32.000 0.00 0.00 0.00 3.36
2442 2829 7.716612 TCTTTCTTTCTTTCCAAGTTCATTCC 58.283 34.615 0.00 0.00 0.00 3.01
2443 2830 9.586435 TTTCTTTCTTTCTTTCCAAGTTCATTC 57.414 29.630 0.00 0.00 0.00 2.67
2444 2831 9.591792 CTTTCTTTCTTTCTTTCCAAGTTCATT 57.408 29.630 0.00 0.00 0.00 2.57
2445 2832 8.200120 CCTTTCTTTCTTTCTTTCCAAGTTCAT 58.800 33.333 0.00 0.00 0.00 2.57
2446 2833 7.396055 TCCTTTCTTTCTTTCTTTCCAAGTTCA 59.604 33.333 0.00 0.00 0.00 3.18
2447 2834 7.772166 TCCTTTCTTTCTTTCTTTCCAAGTTC 58.228 34.615 0.00 0.00 0.00 3.01
2448 2835 7.147828 CCTCCTTTCTTTCTTTCTTTCCAAGTT 60.148 37.037 0.00 0.00 0.00 2.66
2471 2910 4.826556 ACTGAATGACTTTACTGCTCCTC 58.173 43.478 0.00 0.00 0.00 3.71
2473 2912 4.569943 TGACTGAATGACTTTACTGCTCC 58.430 43.478 0.00 0.00 0.00 4.70
2485 2924 2.830104 CATCGATGGCTGACTGAATGA 58.170 47.619 17.96 0.00 0.00 2.57
2511 2980 5.611374 AGTAAAAGACTAAACAGCAGCAGA 58.389 37.500 0.00 0.00 36.27 4.26
2520 2989 5.212934 GCTGGTGCAAGTAAAAGACTAAAC 58.787 41.667 0.00 0.00 37.44 2.01
2521 2990 5.432885 GCTGGTGCAAGTAAAAGACTAAA 57.567 39.130 0.00 0.00 37.44 1.85
2555 3024 0.323178 ATCCTGCTGGTCCTTGCTTG 60.323 55.000 9.73 2.96 34.23 4.01
2556 3025 0.034670 GATCCTGCTGGTCCTTGCTT 60.035 55.000 9.73 0.00 34.23 3.91
2563 3032 2.169352 TGCTAGAAAGATCCTGCTGGTC 59.831 50.000 9.73 6.79 34.23 4.02
2565 3034 2.996249 TGCTAGAAAGATCCTGCTGG 57.004 50.000 2.58 2.58 0.00 4.85
2583 3056 3.103447 TCTCCAGCATTTCTAGCGATG 57.897 47.619 0.00 1.96 37.01 3.84
2586 3059 1.530293 GCATCTCCAGCATTTCTAGCG 59.470 52.381 0.00 0.00 37.01 4.26
2610 3124 0.746063 TCCACTTTTGGTTGCTGCAG 59.254 50.000 10.11 10.11 44.35 4.41
2619 3133 5.906073 AGAAACATTCTTGTCCACTTTTGG 58.094 37.500 0.00 0.00 39.82 3.28
2653 3177 3.881089 TGATGTATGGATGAGCAAGCAAG 59.119 43.478 0.00 0.00 0.00 4.01
2654 3178 3.888583 TGATGTATGGATGAGCAAGCAA 58.111 40.909 0.00 0.00 0.00 3.91
2691 3256 2.430382 ATTGTTGGTGCTGCTGCTGC 62.430 55.000 22.51 22.51 40.48 5.25
2700 3265 9.294030 CAGATAAATAAAGAAGATTGTTGGTGC 57.706 33.333 0.00 0.00 0.00 5.01
2736 3306 1.035932 ATCTGCCTGGATGCAACAGC 61.036 55.000 14.42 11.00 41.51 4.40
2777 3351 0.900421 CAGTCCAGTCCAGCAGATGA 59.100 55.000 0.00 0.00 0.00 2.92
2778 3352 0.743701 GCAGTCCAGTCCAGCAGATG 60.744 60.000 0.00 0.00 0.00 2.90
2779 3353 0.908656 AGCAGTCCAGTCCAGCAGAT 60.909 55.000 0.00 0.00 0.00 2.90
2783 3357 1.375268 GACAGCAGTCCAGTCCAGC 60.375 63.158 0.00 0.00 38.89 4.85
2784 3358 0.037512 CAGACAGCAGTCCAGTCCAG 60.038 60.000 5.52 0.00 46.15 3.86
2786 3360 0.320247 CACAGACAGCAGTCCAGTCC 60.320 60.000 5.52 0.00 46.15 3.85
2787 3361 0.676184 TCACAGACAGCAGTCCAGTC 59.324 55.000 5.52 0.00 46.15 3.51
2788 3362 1.123077 TTCACAGACAGCAGTCCAGT 58.877 50.000 5.52 2.43 46.15 4.00
2918 3689 8.873830 CATTGGTCTCTACATACTTTGTTGTAG 58.126 37.037 4.16 4.16 44.28 2.74
2924 3695 7.550551 ACATGACATTGGTCTCTACATACTTTG 59.449 37.037 0.00 0.00 44.61 2.77
2933 3704 4.445453 GCATGACATGACATTGGTCTCTA 58.555 43.478 19.76 0.00 44.61 2.43
2934 3705 3.276857 GCATGACATGACATTGGTCTCT 58.723 45.455 19.76 0.00 44.61 3.10
2936 3707 2.011947 CGCATGACATGACATTGGTCT 58.988 47.619 19.76 0.00 44.61 3.85
2937 3708 2.009051 TCGCATGACATGACATTGGTC 58.991 47.619 19.76 0.00 44.57 4.02
2938 3709 2.112380 TCGCATGACATGACATTGGT 57.888 45.000 19.76 0.00 0.00 3.67
2939 3710 3.065648 TCAATCGCATGACATGACATTGG 59.934 43.478 25.08 14.78 0.00 3.16
3001 3822 3.034924 TTGCACACAAGGACCATCC 57.965 52.632 0.00 0.00 36.58 3.51
3037 3858 3.489229 GGAGAAATAATGCCTGAAACCGC 60.489 47.826 0.00 0.00 0.00 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.