Multiple sequence alignment - TraesCS3D01G542500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G542500 chr3D 100.000 3344 0 0 1 3344 613571372 613568029 0.000000e+00 6176.0
1 TraesCS3D01G542500 chr3D 97.000 800 22 2 1 799 587799145 587798347 0.000000e+00 1343.0
2 TraesCS3D01G542500 chr3D 96.375 800 26 3 1 799 262279033 262279830 0.000000e+00 1314.0
3 TraesCS3D01G542500 chr3D 81.880 1468 168 50 798 2194 613842675 613844115 0.000000e+00 1147.0
4 TraesCS3D01G542500 chr3D 85.816 141 6 9 2054 2194 613569172 613569046 1.620000e-28 137.0
5 TraesCS3D01G542500 chr3D 85.816 141 6 9 2201 2327 613569319 613569179 1.620000e-28 137.0
6 TraesCS3D01G542500 chr1D 97.500 800 18 2 1 799 216315034 216314236 0.000000e+00 1365.0
7 TraesCS3D01G542500 chr1D 97.125 800 21 2 1 799 216306747 216305949 0.000000e+00 1349.0
8 TraesCS3D01G542500 chr1D 96.750 800 24 2 1 799 169209383 169210181 0.000000e+00 1332.0
9 TraesCS3D01G542500 chr1D 96.758 802 20 6 1 799 183859484 183860282 0.000000e+00 1332.0
10 TraesCS3D01G542500 chr1D 77.696 816 128 35 1628 2406 86208909 86209707 1.830000e-122 449.0
11 TraesCS3D01G542500 chr7D 96.871 799 24 1 1 799 165127566 165126769 0.000000e+00 1336.0
12 TraesCS3D01G542500 chr7D 96.746 799 24 2 2 799 375084135 375084932 0.000000e+00 1330.0
13 TraesCS3D01G542500 chr6D 96.500 800 25 3 1 799 443356866 443357663 0.000000e+00 1319.0
14 TraesCS3D01G542500 chr3A 84.395 801 87 23 1628 2401 710646659 710645870 0.000000e+00 752.0
15 TraesCS3D01G542500 chr3A 84.418 507 60 13 803 1300 710659216 710658720 6.490000e-132 481.0
16 TraesCS3D01G542500 chr3A 84.416 308 32 9 2955 3261 710644900 710644608 4.220000e-74 289.0
17 TraesCS3D01G542500 chr3A 85.211 142 12 8 2054 2194 710646083 710645950 1.620000e-28 137.0
18 TraesCS3D01G542500 chr3A 86.047 129 10 4 2747 2875 710645341 710645221 7.530000e-27 132.0
19 TraesCS3D01G542500 chr1A 77.183 859 117 42 1661 2472 586832753 586831927 8.570000e-116 427.0
20 TraesCS3D01G542500 chr1A 75.556 405 74 16 2012 2404 80676473 80676864 3.430000e-40 176.0
21 TraesCS3D01G542500 chr1A 83.163 196 21 2 2875 3070 80678414 80678597 5.740000e-38 169.0
22 TraesCS3D01G542500 chr1A 77.224 281 36 13 3083 3342 80678668 80678941 4.500000e-29 139.0
23 TraesCS3D01G542500 chr1A 82.517 143 15 7 2054 2194 586832198 586832064 2.110000e-22 117.0
24 TraesCS3D01G542500 chr1A 87.629 97 10 2 3247 3342 586830670 586830575 9.810000e-21 111.0
25 TraesCS3D01G542500 chr1A 74.101 278 45 16 3054 3324 80616235 80616492 4.600000e-14 89.8
26 TraesCS3D01G542500 chr1A 93.617 47 3 0 1674 1720 97952998 97952952 1.660000e-08 71.3
27 TraesCS3D01G542500 chr3B 86.286 175 9 7 3164 3337 822802669 822802509 3.430000e-40 176.0
28 TraesCS3D01G542500 chr3B 87.586 145 11 4 2977 3120 822802808 822802670 9.600000e-36 161.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G542500 chr3D 613568029 613571372 3343 True 2150.000000 6176 90.54400 1 3344 3 chr3D.!!$R2 3343
1 TraesCS3D01G542500 chr3D 587798347 587799145 798 True 1343.000000 1343 97.00000 1 799 1 chr3D.!!$R1 798
2 TraesCS3D01G542500 chr3D 262279033 262279830 797 False 1314.000000 1314 96.37500 1 799 1 chr3D.!!$F1 798
3 TraesCS3D01G542500 chr3D 613842675 613844115 1440 False 1147.000000 1147 81.88000 798 2194 1 chr3D.!!$F2 1396
4 TraesCS3D01G542500 chr1D 216314236 216315034 798 True 1365.000000 1365 97.50000 1 799 1 chr1D.!!$R2 798
5 TraesCS3D01G542500 chr1D 216305949 216306747 798 True 1349.000000 1349 97.12500 1 799 1 chr1D.!!$R1 798
6 TraesCS3D01G542500 chr1D 169209383 169210181 798 False 1332.000000 1332 96.75000 1 799 1 chr1D.!!$F2 798
7 TraesCS3D01G542500 chr1D 183859484 183860282 798 False 1332.000000 1332 96.75800 1 799 1 chr1D.!!$F3 798
8 TraesCS3D01G542500 chr1D 86208909 86209707 798 False 449.000000 449 77.69600 1628 2406 1 chr1D.!!$F1 778
9 TraesCS3D01G542500 chr7D 165126769 165127566 797 True 1336.000000 1336 96.87100 1 799 1 chr7D.!!$R1 798
10 TraesCS3D01G542500 chr7D 375084135 375084932 797 False 1330.000000 1330 96.74600 2 799 1 chr7D.!!$F1 797
11 TraesCS3D01G542500 chr6D 443356866 443357663 797 False 1319.000000 1319 96.50000 1 799 1 chr6D.!!$F1 798
12 TraesCS3D01G542500 chr3A 710644608 710646659 2051 True 327.500000 752 85.01725 1628 3261 4 chr3A.!!$R2 1633
13 TraesCS3D01G542500 chr1A 586830575 586832753 2178 True 218.333333 427 82.44300 1661 3342 3 chr1A.!!$R2 1681

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
954 961 0.907230 AGGAAGAGGTCTGGTGGAGC 60.907 60.0 0.00 0.0 42.26 4.70 F
2187 2446 0.037326 CCACCTCGCTGCAAGAGTTA 60.037 55.0 15.17 0.0 34.36 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2273 2532 0.036732 TTCTTTGGCAGCGACCTCAT 59.963 50.0 0.0 0.00 0.0 2.90 R
3157 4107 0.388520 CCTTGTGCATCGTCGAGACA 60.389 55.0 0.0 0.78 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
158 160 3.686726 CAGCCATTTGACCTCAGTAACTC 59.313 47.826 0.00 0.00 0.00 3.01
286 288 4.096382 GCCAGACATGATTTTTGGACGTAT 59.904 41.667 0.00 0.00 0.00 3.06
335 337 2.664851 CACGCGTGTCCACCATGT 60.665 61.111 30.50 0.00 32.30 3.21
427 429 2.594962 CGAGCGTGCCAAACTTCGT 61.595 57.895 0.00 0.00 32.24 3.85
699 705 2.631580 CCCTCTCCGCTCGCCTATC 61.632 68.421 0.00 0.00 0.00 2.08
753 760 3.966543 CCACTCCCACACACCCCC 61.967 72.222 0.00 0.00 0.00 5.40
824 831 4.695455 TCGGAAAGAGATTTGAATGTGACC 59.305 41.667 0.00 0.00 0.00 4.02
842 849 3.008704 TGACCTGGTTTCCTAGGCTAAAC 59.991 47.826 14.83 14.83 37.61 2.01
844 851 3.591977 ACCTGGTTTCCTAGGCTAAACAT 59.408 43.478 21.45 5.49 37.33 2.71
849 856 5.652014 TGGTTTCCTAGGCTAAACATGATTG 59.348 40.000 21.45 0.00 37.33 2.67
856 863 6.698766 CCTAGGCTAAACATGATTGAAATTGC 59.301 38.462 0.00 0.00 0.00 3.56
859 866 4.268405 GCTAAACATGATTGAAATTGCGGG 59.732 41.667 0.00 0.00 0.00 6.13
872 879 2.028925 GCGGGTTGCCCAAAACTG 59.971 61.111 4.96 0.00 45.83 3.16
873 880 2.791868 GCGGGTTGCCCAAAACTGT 61.792 57.895 4.96 0.00 45.83 3.55
874 881 1.819905 CGGGTTGCCCAAAACTGTT 59.180 52.632 4.96 0.00 45.83 3.16
895 902 1.687123 GTCGCTGCCTCCTATTCCTTA 59.313 52.381 0.00 0.00 0.00 2.69
908 915 7.928706 CCTCCTATTCCTTATAGTCACACTTTG 59.071 40.741 0.00 0.00 35.42 2.77
911 918 7.495934 CCTATTCCTTATAGTCACACTTTGTGG 59.504 40.741 6.47 0.00 39.78 4.17
924 931 5.758296 CACACTTTGTGGTCTGTTACACTAT 59.242 40.000 2.72 0.00 44.27 2.12
925 932 5.989777 ACACTTTGTGGTCTGTTACACTATC 59.010 40.000 2.72 0.00 37.94 2.08
939 946 3.705051 ACACTATCGGGACTTGTAGGAA 58.295 45.455 0.00 0.00 0.00 3.36
948 955 2.498078 GGACTTGTAGGAAGAGGTCTGG 59.502 54.545 0.00 0.00 0.00 3.86
949 956 3.166679 GACTTGTAGGAAGAGGTCTGGT 58.833 50.000 0.00 0.00 0.00 4.00
952 959 1.431633 TGTAGGAAGAGGTCTGGTGGA 59.568 52.381 0.00 0.00 0.00 4.02
954 961 0.907230 AGGAAGAGGTCTGGTGGAGC 60.907 60.000 0.00 0.00 42.26 4.70
978 985 4.184629 AGATTACTCACACGAATCAAGCC 58.815 43.478 0.00 0.00 32.96 4.35
979 986 1.990799 TACTCACACGAATCAAGCCG 58.009 50.000 0.00 0.00 0.00 5.52
1029 1036 7.349598 TCTGCATATATAGCCTAGATGAGACA 58.650 38.462 0.00 0.00 0.00 3.41
1037 1044 3.451141 CCTAGATGAGACAGTCTTGGC 57.549 52.381 4.05 0.00 32.24 4.52
1065 1073 7.832769 TCCATAATTTAACCCAACTACAAAGC 58.167 34.615 0.00 0.00 0.00 3.51
1069 1077 6.969993 ATTTAACCCAACTACAAAGCTTGA 57.030 33.333 0.00 0.00 0.00 3.02
1070 1078 5.761165 TTAACCCAACTACAAAGCTTGAC 57.239 39.130 0.00 0.00 0.00 3.18
1089 1097 6.574269 GCTTGACTATTAAAAATTGCCCACCT 60.574 38.462 0.00 0.00 0.00 4.00
1102 1110 1.376037 CCACCTCTGGCGGAGAAAC 60.376 63.158 24.84 0.00 44.45 2.78
1105 1113 1.376037 CCTCTGGCGGAGAAACACC 60.376 63.158 24.84 0.00 44.45 4.16
1116 1124 3.610114 CGGAGAAACACCTTCAAATGCTG 60.610 47.826 0.00 0.00 36.40 4.41
1130 1138 2.086054 ATGCTGACCTCGTTGAAGAC 57.914 50.000 0.00 0.00 0.00 3.01
1137 1145 0.109226 CCTCGTTGAAGACCCTCGAC 60.109 60.000 0.00 0.00 0.00 4.20
1157 1165 5.753438 TCGACATAGATGGTTCAAGCATTAC 59.247 40.000 3.02 0.00 36.31 1.89
1161 1169 4.946784 AGATGGTTCAAGCATTACGTTC 57.053 40.909 3.02 0.00 36.31 3.95
1162 1170 3.689649 AGATGGTTCAAGCATTACGTTCC 59.310 43.478 3.02 0.00 36.31 3.62
1163 1171 2.852449 TGGTTCAAGCATTACGTTCCA 58.148 42.857 0.00 0.00 0.00 3.53
1164 1172 2.811431 TGGTTCAAGCATTACGTTCCAG 59.189 45.455 0.00 0.00 0.00 3.86
1165 1173 2.414161 GGTTCAAGCATTACGTTCCAGC 60.414 50.000 0.00 0.00 0.00 4.85
1166 1174 2.177394 TCAAGCATTACGTTCCAGCA 57.823 45.000 0.00 0.00 0.00 4.41
1168 1176 2.483877 TCAAGCATTACGTTCCAGCAAG 59.516 45.455 0.00 0.00 0.00 4.01
1169 1177 2.185004 AGCATTACGTTCCAGCAAGT 57.815 45.000 0.00 0.00 0.00 3.16
1170 1178 2.504367 AGCATTACGTTCCAGCAAGTT 58.496 42.857 0.00 0.00 0.00 2.66
1172 1180 2.668279 GCATTACGTTCCAGCAAGTTGG 60.668 50.000 4.75 0.00 39.70 3.77
1173 1181 1.600023 TTACGTTCCAGCAAGTTGGG 58.400 50.000 4.75 0.00 38.81 4.12
1175 1183 1.228124 CGTTCCAGCAAGTTGGGGA 60.228 57.895 4.75 0.00 38.81 4.81
1176 1184 1.237285 CGTTCCAGCAAGTTGGGGAG 61.237 60.000 4.75 0.00 38.81 4.30
1177 1185 0.895559 GTTCCAGCAAGTTGGGGAGG 60.896 60.000 4.75 0.00 38.81 4.30
1178 1186 2.677875 CCAGCAAGTTGGGGAGGC 60.678 66.667 4.75 0.00 34.46 4.70
1179 1187 2.677875 CAGCAAGTTGGGGAGGCC 60.678 66.667 4.75 0.00 0.00 5.19
1180 1188 4.351054 AGCAAGTTGGGGAGGCCG 62.351 66.667 4.75 0.00 0.00 6.13
1181 1189 4.660938 GCAAGTTGGGGAGGCCGT 62.661 66.667 4.75 0.00 0.00 5.68
1182 1190 2.115266 CAAGTTGGGGAGGCCGTT 59.885 61.111 0.00 0.00 0.00 4.44
1183 1191 1.971695 CAAGTTGGGGAGGCCGTTC 60.972 63.158 0.00 0.00 0.00 3.95
1184 1192 2.154074 AAGTTGGGGAGGCCGTTCT 61.154 57.895 0.00 0.00 0.00 3.01
1185 1193 1.716028 AAGTTGGGGAGGCCGTTCTT 61.716 55.000 0.00 0.00 0.00 2.52
1205 1213 1.896220 TGGCAGCTTCCAGTTAACAG 58.104 50.000 0.00 0.00 0.00 3.16
1206 1214 1.168714 GGCAGCTTCCAGTTAACAGG 58.831 55.000 10.69 10.69 0.00 4.00
1211 1219 4.802918 GCAGCTTCCAGTTAACAGGTTAGA 60.803 45.833 15.87 0.00 0.00 2.10
1216 1224 7.180408 AGCTTCCAGTTAACAGGTTAGAGATAA 59.820 37.037 15.87 1.05 0.00 1.75
1217 1225 7.822822 GCTTCCAGTTAACAGGTTAGAGATAAA 59.177 37.037 15.87 0.41 0.00 1.40
1218 1226 9.152595 CTTCCAGTTAACAGGTTAGAGATAAAC 57.847 37.037 15.87 0.00 0.00 2.01
1219 1227 7.318141 TCCAGTTAACAGGTTAGAGATAAACG 58.682 38.462 15.87 0.00 0.00 3.60
1220 1228 6.534079 CCAGTTAACAGGTTAGAGATAAACGG 59.466 42.308 8.61 0.00 0.00 4.44
1221 1229 7.095270 CAGTTAACAGGTTAGAGATAAACGGT 58.905 38.462 8.61 0.00 0.00 4.83
1222 1230 8.246180 CAGTTAACAGGTTAGAGATAAACGGTA 58.754 37.037 8.61 0.00 0.00 4.02
1228 1236 4.646492 GGTTAGAGATAAACGGTAGGTGGA 59.354 45.833 0.00 0.00 0.00 4.02
1246 1254 1.208293 GGAGTGGTAGCTGGAAGGAAG 59.792 57.143 0.00 0.00 0.00 3.46
1260 1268 3.366171 GGAAGGAAGTGACACGTCTACTC 60.366 52.174 18.93 12.96 0.00 2.59
1261 1269 2.860009 AGGAAGTGACACGTCTACTCA 58.140 47.619 18.93 0.00 0.00 3.41
1282 1290 2.233271 CTCATCTCCCTGAGCTCTCTC 58.767 57.143 16.19 0.00 36.53 3.20
1283 1291 1.568123 TCATCTCCCTGAGCTCTCTCA 59.432 52.381 16.19 0.00 46.43 3.27
1289 1297 1.204467 CCCTGAGCTCTCTCACTTGTC 59.796 57.143 16.19 0.00 43.95 3.18
1294 1302 5.769662 CCTGAGCTCTCTCACTTGTCTATAT 59.230 44.000 16.19 0.00 43.95 0.86
1295 1303 6.294120 CCTGAGCTCTCTCACTTGTCTATATG 60.294 46.154 16.19 0.00 43.95 1.78
1297 1305 6.039159 TGAGCTCTCTCACTTGTCTATATGTG 59.961 42.308 16.19 0.00 43.95 3.21
1298 1306 5.301551 AGCTCTCTCACTTGTCTATATGTGG 59.698 44.000 0.00 0.00 0.00 4.17
1299 1307 5.300539 GCTCTCTCACTTGTCTATATGTGGA 59.699 44.000 0.00 0.00 0.00 4.02
1300 1308 6.183360 GCTCTCTCACTTGTCTATATGTGGAA 60.183 42.308 0.00 0.00 0.00 3.53
1302 1310 6.322456 TCTCTCACTTGTCTATATGTGGAAGG 59.678 42.308 0.00 0.00 0.00 3.46
1304 1312 4.408921 TCACTTGTCTATATGTGGAAGGGG 59.591 45.833 0.00 0.00 0.00 4.79
1305 1313 4.408921 CACTTGTCTATATGTGGAAGGGGA 59.591 45.833 0.00 0.00 0.00 4.81
1306 1314 5.072329 CACTTGTCTATATGTGGAAGGGGAT 59.928 44.000 0.00 0.00 0.00 3.85
1307 1315 5.072329 ACTTGTCTATATGTGGAAGGGGATG 59.928 44.000 0.00 0.00 0.00 3.51
1308 1316 4.566837 TGTCTATATGTGGAAGGGGATGT 58.433 43.478 0.00 0.00 0.00 3.06
1309 1317 4.347876 TGTCTATATGTGGAAGGGGATGTG 59.652 45.833 0.00 0.00 0.00 3.21
1310 1318 4.593206 GTCTATATGTGGAAGGGGATGTGA 59.407 45.833 0.00 0.00 0.00 3.58
1311 1319 4.840680 TCTATATGTGGAAGGGGATGTGAG 59.159 45.833 0.00 0.00 0.00 3.51
1312 1320 1.971149 ATGTGGAAGGGGATGTGAGA 58.029 50.000 0.00 0.00 0.00 3.27
1315 1323 1.065126 GTGGAAGGGGATGTGAGAAGG 60.065 57.143 0.00 0.00 0.00 3.46
1317 1325 2.225779 TGGAAGGGGATGTGAGAAGGTA 60.226 50.000 0.00 0.00 0.00 3.08
1320 1328 4.455606 GAAGGGGATGTGAGAAGGTATTG 58.544 47.826 0.00 0.00 0.00 1.90
1333 1341 0.683179 GGTATTGACAGGGTTGGGCC 60.683 60.000 0.00 0.00 0.00 5.80
1353 1370 1.308783 TGGACGTGCAGCAACAAACA 61.309 50.000 5.33 0.00 0.00 2.83
1365 1382 2.544277 GCAACAAACAGCAGCATCTTCA 60.544 45.455 0.00 0.00 0.00 3.02
1378 1395 3.114065 GCATCTTCAGCTGCTAAATTGC 58.886 45.455 9.47 9.39 34.62 3.56
1379 1396 3.428452 GCATCTTCAGCTGCTAAATTGCA 60.428 43.478 9.47 0.00 41.05 4.08
1402 1419 6.226052 CAGCAGCAGGATACATATAGAACAA 58.774 40.000 0.00 0.00 41.41 2.83
1409 1426 7.547370 GCAGGATACATATAGAACAACAGATCC 59.453 40.741 0.00 0.00 41.41 3.36
1446 1463 0.898789 AGGAGGTCGTCGTTGTGGAT 60.899 55.000 0.00 0.00 0.00 3.41
1450 1467 1.068474 GGTCGTCGTTGTGGATGAAG 58.932 55.000 0.00 0.00 33.96 3.02
1456 1473 3.493129 CGTCGTTGTGGATGAAGAAGAAA 59.507 43.478 0.00 0.00 0.00 2.52
1464 1493 7.013823 TGTGGATGAAGAAGAAAGAGAAGAT 57.986 36.000 0.00 0.00 0.00 2.40
1467 1496 7.064490 GTGGATGAAGAAGAAAGAGAAGATGAC 59.936 40.741 0.00 0.00 0.00 3.06
1473 1502 4.086199 AGAAAGAGAAGATGACGACGAC 57.914 45.455 0.00 0.00 0.00 4.34
1492 1521 3.198489 GGCTGCTGCTCTTACCGC 61.198 66.667 15.64 0.00 39.59 5.68
1493 1522 3.198489 GCTGCTGCTCTTACCGCC 61.198 66.667 8.53 0.00 36.03 6.13
1494 1523 2.887568 CTGCTGCTCTTACCGCCG 60.888 66.667 0.00 0.00 0.00 6.46
1495 1524 4.451150 TGCTGCTCTTACCGCCGG 62.451 66.667 0.00 0.00 0.00 6.13
1503 1532 4.169696 TTACCGCCGGCCCATCTG 62.170 66.667 23.46 5.12 0.00 2.90
1513 1542 1.044611 GGCCCATCTGTCCTACTCTC 58.955 60.000 0.00 0.00 0.00 3.20
1533 1562 1.299648 CCAGGAGTTGGGCATCGAA 59.700 57.895 0.00 0.00 43.75 3.71
1534 1563 0.745845 CCAGGAGTTGGGCATCGAAG 60.746 60.000 0.00 0.00 43.75 3.79
1541 1570 1.401905 GTTGGGCATCGAAGATTGTCC 59.598 52.381 0.28 0.28 45.12 4.02
1545 1574 2.208431 GGCATCGAAGATTGTCCAGAG 58.792 52.381 0.00 0.00 45.12 3.35
1554 1583 2.235898 AGATTGTCCAGAGCTTGTCCTC 59.764 50.000 0.00 0.00 0.00 3.71
1557 1598 0.248843 GTCCAGAGCTTGTCCTCAGG 59.751 60.000 0.00 0.00 39.21 3.86
1562 1603 1.537397 AGCTTGTCCTCAGGAGCCA 60.537 57.895 0.00 0.00 35.79 4.75
1580 1627 0.606401 CACGGGACAGGTCTGCAATT 60.606 55.000 0.00 0.00 0.00 2.32
1595 1642 1.961435 GCAATTCATGGGCTCCCTCAA 60.961 52.381 6.50 0.00 36.94 3.02
1596 1643 1.753073 CAATTCATGGGCTCCCTCAAC 59.247 52.381 6.50 0.00 36.94 3.18
1598 1645 0.038166 TTCATGGGCTCCCTCAACAC 59.962 55.000 6.50 0.00 36.94 3.32
1602 1649 0.251297 TGGGCTCCCTCAACACAATG 60.251 55.000 6.50 0.00 36.94 2.82
1603 1650 0.038166 GGGCTCCCTCAACACAATGA 59.962 55.000 0.00 0.00 0.00 2.57
1605 1652 1.541588 GGCTCCCTCAACACAATGAAC 59.458 52.381 0.00 0.00 0.00 3.18
1606 1653 2.508526 GCTCCCTCAACACAATGAACT 58.491 47.619 0.00 0.00 0.00 3.01
1608 1655 3.057946 GCTCCCTCAACACAATGAACTTC 60.058 47.826 0.00 0.00 0.00 3.01
1609 1656 4.392940 CTCCCTCAACACAATGAACTTCT 58.607 43.478 0.00 0.00 0.00 2.85
1611 1658 4.580167 TCCCTCAACACAATGAACTTCTTG 59.420 41.667 0.00 0.00 0.00 3.02
1612 1659 4.339247 CCCTCAACACAATGAACTTCTTGT 59.661 41.667 0.00 0.00 36.04 3.16
1613 1660 5.506317 CCCTCAACACAATGAACTTCTTGTC 60.506 44.000 0.00 0.00 33.45 3.18
1615 1662 6.122850 TCAACACAATGAACTTCTTGTCTG 57.877 37.500 0.00 5.66 33.45 3.51
1619 1686 4.037208 CACAATGAACTTCTTGTCTGCCTT 59.963 41.667 0.00 0.00 33.45 4.35
1642 1718 2.528127 TCTGCCCTTTCCCGTCCA 60.528 61.111 0.00 0.00 0.00 4.02
1658 1734 1.077212 CCACCCTGCAATCCCTCAG 60.077 63.158 0.00 0.00 0.00 3.35
1724 1800 1.470890 CAACCTCACCTCTCTCGAGAC 59.529 57.143 12.08 0.00 39.74 3.36
1735 1811 4.017380 TCTCTCGAGACGTTAAGCATTC 57.983 45.455 12.08 0.00 31.41 2.67
1751 1827 0.469892 ATTCGGGATTTGGGGGATGC 60.470 55.000 0.00 0.00 0.00 3.91
1768 1844 2.033194 GCTTTTAGGTGCGACGGCT 61.033 57.895 0.00 0.00 40.82 5.52
1771 1847 1.847890 TTTTAGGTGCGACGGCTTGC 61.848 55.000 0.00 0.00 40.82 4.01
1889 2001 0.468226 TCCAAACTGCAGGAACTCGT 59.532 50.000 19.93 0.00 34.60 4.18
1907 2019 0.370273 GTGACGGATGACATCGCAAC 59.630 55.000 9.31 2.09 0.00 4.17
1912 2024 1.737029 CGGATGACATCGCAACAGTCT 60.737 52.381 9.31 0.00 33.56 3.24
1914 2026 3.521560 GGATGACATCGCAACAGTCTTA 58.478 45.455 9.31 0.00 33.56 2.10
1966 2078 4.889995 CCTCCCTCACCAAATTATCCTTTC 59.110 45.833 0.00 0.00 0.00 2.62
1971 2086 6.552350 CCCTCACCAAATTATCCTTTCATGAT 59.448 38.462 0.00 0.00 0.00 2.45
1983 2101 6.581388 TCCTTTCATGATAAAGAGGTGGAT 57.419 37.500 8.45 0.00 38.50 3.41
2025 2143 1.480545 GAGGCTCTTTCTCTCCTCACC 59.519 57.143 7.40 0.00 43.42 4.02
2083 2201 3.731728 GGTGCCTCCCAGCCATGA 61.732 66.667 0.00 0.00 35.94 3.07
2084 2202 2.356278 GTGCCTCCCAGCCATGAA 59.644 61.111 0.00 0.00 0.00 2.57
2085 2203 1.751927 GTGCCTCCCAGCCATGAAG 60.752 63.158 0.00 0.00 0.00 3.02
2086 2204 2.233566 TGCCTCCCAGCCATGAAGT 61.234 57.895 0.00 0.00 0.00 3.01
2087 2205 1.452833 GCCTCCCAGCCATGAAGTC 60.453 63.158 0.00 0.00 0.00 3.01
2119 2378 3.341823 CTCACCAACCTCAAGAGATTGG 58.658 50.000 19.48 19.48 45.91 3.16
2125 2384 4.163839 CCAACCTCAAGAGATTGGAGATCT 59.836 45.833 16.78 0.00 43.66 2.75
2128 2387 3.710677 CCTCAAGAGATTGGAGATCTGGT 59.289 47.826 0.00 0.00 0.00 4.00
2129 2388 4.898265 CCTCAAGAGATTGGAGATCTGGTA 59.102 45.833 0.00 0.00 0.00 3.25
2181 2440 4.020617 CTCCCCACCTCGCTGCAA 62.021 66.667 0.00 0.00 0.00 4.08
2182 2441 3.965539 CTCCCCACCTCGCTGCAAG 62.966 68.421 0.00 0.00 0.00 4.01
2183 2442 4.020617 CCCCACCTCGCTGCAAGA 62.021 66.667 0.00 0.00 34.07 3.02
2184 2443 2.435586 CCCACCTCGCTGCAAGAG 60.436 66.667 10.89 10.89 34.07 2.85
2185 2444 2.345244 CCACCTCGCTGCAAGAGT 59.655 61.111 15.17 4.04 34.36 3.24
2186 2445 1.302033 CCACCTCGCTGCAAGAGTT 60.302 57.895 15.17 1.38 34.36 3.01
2187 2446 0.037326 CCACCTCGCTGCAAGAGTTA 60.037 55.000 15.17 0.00 34.36 2.24
2188 2447 1.354040 CACCTCGCTGCAAGAGTTAG 58.646 55.000 15.17 5.48 34.36 2.34
2189 2448 1.067565 CACCTCGCTGCAAGAGTTAGA 60.068 52.381 15.17 0.00 34.36 2.10
2190 2449 1.203523 ACCTCGCTGCAAGAGTTAGAG 59.796 52.381 15.17 4.91 34.36 2.43
2191 2450 1.470632 CCTCGCTGCAAGAGTTAGAGG 60.471 57.143 15.17 0.89 34.36 3.69
2192 2451 1.203523 CTCGCTGCAAGAGTTAGAGGT 59.796 52.381 9.91 0.00 34.36 3.85
2193 2452 1.202582 TCGCTGCAAGAGTTAGAGGTC 59.797 52.381 0.00 0.00 34.36 3.85
2194 2453 1.203523 CGCTGCAAGAGTTAGAGGTCT 59.796 52.381 0.00 0.00 34.07 3.85
2195 2454 2.353208 CGCTGCAAGAGTTAGAGGTCTT 60.353 50.000 0.00 0.00 34.07 3.01
2196 2455 3.258228 GCTGCAAGAGTTAGAGGTCTTC 58.742 50.000 0.00 0.00 34.07 2.87
2197 2456 3.306364 GCTGCAAGAGTTAGAGGTCTTCA 60.306 47.826 0.00 0.00 34.07 3.02
2198 2457 4.493547 CTGCAAGAGTTAGAGGTCTTCAG 58.506 47.826 0.00 0.00 34.07 3.02
2199 2458 4.152647 TGCAAGAGTTAGAGGTCTTCAGA 58.847 43.478 0.00 0.00 30.31 3.27
2200 2459 4.774726 TGCAAGAGTTAGAGGTCTTCAGAT 59.225 41.667 0.00 0.00 30.31 2.90
2201 2460 5.108517 GCAAGAGTTAGAGGTCTTCAGATG 58.891 45.833 0.00 0.00 30.31 2.90
2202 2461 5.108517 CAAGAGTTAGAGGTCTTCAGATGC 58.891 45.833 0.00 0.00 30.31 3.91
2203 2462 4.348486 AGAGTTAGAGGTCTTCAGATGCA 58.652 43.478 0.00 0.00 0.00 3.96
2204 2463 4.159506 AGAGTTAGAGGTCTTCAGATGCAC 59.840 45.833 0.00 0.00 0.00 4.57
2205 2464 3.196685 AGTTAGAGGTCTTCAGATGCACC 59.803 47.826 0.00 0.00 0.00 5.01
2206 2465 1.649321 AGAGGTCTTCAGATGCACCA 58.351 50.000 0.00 0.00 0.00 4.17
2207 2466 1.980765 AGAGGTCTTCAGATGCACCAA 59.019 47.619 0.00 0.00 0.00 3.67
2208 2467 2.079925 GAGGTCTTCAGATGCACCAAC 58.920 52.381 0.00 0.00 0.00 3.77
2209 2468 1.168714 GGTCTTCAGATGCACCAACC 58.831 55.000 0.00 0.00 0.00 3.77
2210 2469 1.271597 GGTCTTCAGATGCACCAACCT 60.272 52.381 0.00 0.00 0.00 3.50
2211 2470 2.079925 GTCTTCAGATGCACCAACCTC 58.920 52.381 0.00 0.00 0.00 3.85
2212 2471 1.003580 TCTTCAGATGCACCAACCTCC 59.996 52.381 0.00 0.00 0.00 4.30
2213 2472 0.321564 TTCAGATGCACCAACCTCCG 60.322 55.000 0.00 0.00 0.00 4.63
2214 2473 1.746615 CAGATGCACCAACCTCCGG 60.747 63.158 0.00 0.00 0.00 5.14
2215 2474 2.224159 AGATGCACCAACCTCCGGT 61.224 57.895 0.00 0.00 37.65 5.28
2220 2479 3.468063 ACCAACCTCCGGTGTCTC 58.532 61.111 0.00 0.00 35.34 3.36
2221 2480 2.214920 ACCAACCTCCGGTGTCTCC 61.215 63.158 0.00 0.00 35.34 3.71
2222 2481 2.663196 CAACCTCCGGTGTCTCCC 59.337 66.667 0.00 0.00 35.34 4.30
2223 2482 2.203182 AACCTCCGGTGTCTCCCA 59.797 61.111 0.00 0.00 35.34 4.37
2224 2483 1.913762 AACCTCCGGTGTCTCCCAG 60.914 63.158 0.00 0.00 35.34 4.45
2225 2484 2.037367 CCTCCGGTGTCTCCCAGA 59.963 66.667 0.00 0.00 0.00 3.86
2226 2485 1.609501 CCTCCGGTGTCTCCCAGAA 60.610 63.158 0.00 0.00 0.00 3.02
2227 2486 1.608717 CCTCCGGTGTCTCCCAGAAG 61.609 65.000 0.00 0.00 0.00 2.85
2228 2487 1.608717 CTCCGGTGTCTCCCAGAAGG 61.609 65.000 0.00 0.00 0.00 3.46
2238 2497 3.677527 CCAGAAGGGCTGCACAAG 58.322 61.111 4.01 0.00 43.50 3.16
2248 2507 1.656441 CTGCACAAGCTCACCAACC 59.344 57.895 0.00 0.00 42.74 3.77
2249 2508 0.820891 CTGCACAAGCTCACCAACCT 60.821 55.000 0.00 0.00 42.74 3.50
2250 2509 0.819259 TGCACAAGCTCACCAACCTC 60.819 55.000 0.00 0.00 42.74 3.85
2251 2510 0.819259 GCACAAGCTCACCAACCTCA 60.819 55.000 0.00 0.00 37.91 3.86
2252 2511 1.233019 CACAAGCTCACCAACCTCAG 58.767 55.000 0.00 0.00 0.00 3.35
2253 2512 0.109342 ACAAGCTCACCAACCTCAGG 59.891 55.000 0.00 0.00 0.00 3.86
2254 2513 0.397941 CAAGCTCACCAACCTCAGGA 59.602 55.000 0.00 0.00 0.00 3.86
2255 2514 1.004044 CAAGCTCACCAACCTCAGGAT 59.996 52.381 0.00 0.00 0.00 3.24
2256 2515 2.237143 CAAGCTCACCAACCTCAGGATA 59.763 50.000 0.00 0.00 0.00 2.59
2257 2516 1.834263 AGCTCACCAACCTCAGGATAC 59.166 52.381 0.00 0.00 0.00 2.24
2275 2534 3.465990 CTGGTACTGTCCAGCCATG 57.534 57.895 11.53 0.00 46.53 3.66
2276 2535 0.904649 CTGGTACTGTCCAGCCATGA 59.095 55.000 11.53 0.00 46.53 3.07
2277 2536 0.904649 TGGTACTGTCCAGCCATGAG 59.095 55.000 0.00 0.00 33.19 2.90
2278 2537 0.179000 GGTACTGTCCAGCCATGAGG 59.821 60.000 0.00 0.00 38.23 3.86
2279 2538 0.905357 GTACTGTCCAGCCATGAGGT 59.095 55.000 0.00 0.00 37.19 3.85
2280 2539 1.134670 GTACTGTCCAGCCATGAGGTC 60.135 57.143 0.00 0.00 37.19 3.85
2281 2540 1.153489 CTGTCCAGCCATGAGGTCG 60.153 63.158 0.00 0.00 37.19 4.79
2282 2541 2.512515 GTCCAGCCATGAGGTCGC 60.513 66.667 0.00 0.00 37.19 5.19
2283 2542 2.685017 TCCAGCCATGAGGTCGCT 60.685 61.111 0.00 0.00 37.19 4.93
2285 2544 3.200593 CAGCCATGAGGTCGCTGC 61.201 66.667 7.78 0.00 43.12 5.25
2286 2545 4.479993 AGCCATGAGGTCGCTGCC 62.480 66.667 0.00 0.00 37.19 4.85
2287 2546 4.783621 GCCATGAGGTCGCTGCCA 62.784 66.667 0.00 0.00 37.19 4.92
2288 2547 2.046023 CCATGAGGTCGCTGCCAA 60.046 61.111 0.00 0.00 0.00 4.52
2289 2548 1.675310 CCATGAGGTCGCTGCCAAA 60.675 57.895 0.00 0.00 0.00 3.28
2290 2549 1.651240 CCATGAGGTCGCTGCCAAAG 61.651 60.000 0.00 0.00 0.00 2.77
2291 2550 0.674581 CATGAGGTCGCTGCCAAAGA 60.675 55.000 0.00 0.00 0.00 2.52
2292 2551 0.036732 ATGAGGTCGCTGCCAAAGAA 59.963 50.000 0.00 0.00 0.00 2.52
2293 2552 0.036732 TGAGGTCGCTGCCAAAGAAT 59.963 50.000 0.00 0.00 0.00 2.40
2294 2553 0.449388 GAGGTCGCTGCCAAAGAATG 59.551 55.000 0.00 0.00 0.00 2.67
2329 2588 1.929836 CTGCAAGAGTTAGATGTCCGC 59.070 52.381 0.00 0.00 34.07 5.54
2330 2589 0.924090 GCAAGAGTTAGATGTCCGCG 59.076 55.000 0.00 0.00 0.00 6.46
2331 2590 1.469251 GCAAGAGTTAGATGTCCGCGA 60.469 52.381 8.23 0.00 0.00 5.87
2336 2604 1.134818 AGTTAGATGTCCGCGATTGCA 60.135 47.619 8.23 0.31 42.97 4.08
2374 2650 2.420022 ACAGCAATGCAGACGGTTAATC 59.580 45.455 8.35 0.00 0.00 1.75
2378 2654 0.179056 ATGCAGACGGTTAATCGGGG 60.179 55.000 13.58 2.40 0.00 5.73
2421 2700 8.919145 ACTATAGACTACTTTTCCTGATCCAAG 58.081 37.037 6.78 0.00 0.00 3.61
2425 2704 6.500751 AGACTACTTTTCCTGATCCAAGGTAA 59.499 38.462 0.00 0.00 38.58 2.85
2426 2705 7.182930 AGACTACTTTTCCTGATCCAAGGTAAT 59.817 37.037 0.00 0.00 38.58 1.89
2455 2734 3.192212 CCACTTCCTTGCTTTTCCTGATC 59.808 47.826 0.00 0.00 0.00 2.92
2456 2735 3.192212 CACTTCCTTGCTTTTCCTGATCC 59.808 47.826 0.00 0.00 0.00 3.36
2469 2748 1.072173 CCTGATCCAAGACCACACACA 59.928 52.381 0.00 0.00 0.00 3.72
2472 2751 2.092699 TGATCCAAGACCACACACACAA 60.093 45.455 0.00 0.00 0.00 3.33
2473 2752 2.727123 TCCAAGACCACACACACAAT 57.273 45.000 0.00 0.00 0.00 2.71
2474 2753 3.847671 TCCAAGACCACACACACAATA 57.152 42.857 0.00 0.00 0.00 1.90
2475 2754 4.157849 TCCAAGACCACACACACAATAA 57.842 40.909 0.00 0.00 0.00 1.40
2476 2755 4.133820 TCCAAGACCACACACACAATAAG 58.866 43.478 0.00 0.00 0.00 1.73
2477 2756 3.304659 CCAAGACCACACACACAATAAGC 60.305 47.826 0.00 0.00 0.00 3.09
2478 2757 3.492102 AGACCACACACACAATAAGCT 57.508 42.857 0.00 0.00 0.00 3.74
2479 2758 4.617253 AGACCACACACACAATAAGCTA 57.383 40.909 0.00 0.00 0.00 3.32
2480 2759 4.315803 AGACCACACACACAATAAGCTAC 58.684 43.478 0.00 0.00 0.00 3.58
2481 2760 4.040461 AGACCACACACACAATAAGCTACT 59.960 41.667 0.00 0.00 0.00 2.57
2482 2761 5.245301 AGACCACACACACAATAAGCTACTA 59.755 40.000 0.00 0.00 0.00 1.82
2483 2762 5.235516 ACCACACACACAATAAGCTACTAC 58.764 41.667 0.00 0.00 0.00 2.73
2484 2763 5.011738 ACCACACACACAATAAGCTACTACT 59.988 40.000 0.00 0.00 0.00 2.57
2485 2764 5.932303 CCACACACACAATAAGCTACTACTT 59.068 40.000 0.00 0.00 0.00 2.24
2486 2765 6.426937 CCACACACACAATAAGCTACTACTTT 59.573 38.462 0.00 0.00 0.00 2.66
2487 2766 7.360101 CCACACACACAATAAGCTACTACTTTC 60.360 40.741 0.00 0.00 0.00 2.62
2488 2767 7.385205 CACACACACAATAAGCTACTACTTTCT 59.615 37.037 0.00 0.00 0.00 2.52
2489 2768 7.931948 ACACACACAATAAGCTACTACTTTCTT 59.068 33.333 0.00 0.00 0.00 2.52
2490 2769 8.774586 CACACACAATAAGCTACTACTTTCTTT 58.225 33.333 0.00 0.00 0.00 2.52
2491 2770 8.989980 ACACACAATAAGCTACTACTTTCTTTC 58.010 33.333 0.00 0.00 0.00 2.62
2502 2781 6.930667 ACTACTTTCTTTCGCTTGGTTTAA 57.069 33.333 0.00 0.00 0.00 1.52
2503 2782 7.506328 ACTACTTTCTTTCGCTTGGTTTAAT 57.494 32.000 0.00 0.00 0.00 1.40
2505 2784 9.059260 ACTACTTTCTTTCGCTTGGTTTAATTA 57.941 29.630 0.00 0.00 0.00 1.40
2506 2785 9.326339 CTACTTTCTTTCGCTTGGTTTAATTAC 57.674 33.333 0.00 0.00 0.00 1.89
2507 2786 7.143340 ACTTTCTTTCGCTTGGTTTAATTACC 58.857 34.615 0.00 0.00 38.73 2.85
2508 2787 5.632244 TCTTTCGCTTGGTTTAATTACCC 57.368 39.130 0.00 0.00 37.39 3.69
2509 2788 4.460034 TCTTTCGCTTGGTTTAATTACCCC 59.540 41.667 0.00 0.00 37.39 4.95
2510 2789 2.358015 TCGCTTGGTTTAATTACCCCG 58.642 47.619 0.00 0.00 37.39 5.73
2511 2790 2.086094 CGCTTGGTTTAATTACCCCGT 58.914 47.619 0.00 0.00 37.39 5.28
2513 2792 3.671164 CGCTTGGTTTAATTACCCCGTTG 60.671 47.826 0.00 0.00 37.39 4.10
2514 2793 3.256383 GCTTGGTTTAATTACCCCGTTGT 59.744 43.478 0.00 0.00 37.39 3.32
2557 2841 3.780902 TGTACATTCCATCTACTGCACG 58.219 45.455 0.00 0.00 0.00 5.34
2558 2842 3.194755 TGTACATTCCATCTACTGCACGT 59.805 43.478 0.00 0.00 0.00 4.49
2559 2843 4.399934 TGTACATTCCATCTACTGCACGTA 59.600 41.667 0.00 0.00 0.00 3.57
2560 2844 3.782046 ACATTCCATCTACTGCACGTAC 58.218 45.455 0.00 0.00 0.00 3.67
2575 2859 0.541863 CGTACAGGGCTTCTTGGGAT 59.458 55.000 0.00 0.00 0.00 3.85
2578 2862 0.332972 ACAGGGCTTCTTGGGATTCC 59.667 55.000 0.00 0.00 0.00 3.01
2579 2863 0.332632 CAGGGCTTCTTGGGATTCCA 59.667 55.000 4.80 0.00 42.25 3.53
2598 2882 5.692115 TCCAATGTACATTCTTCTAGCCA 57.308 39.130 18.25 0.00 0.00 4.75
2601 2885 5.278169 CCAATGTACATTCTTCTAGCCATGC 60.278 44.000 18.25 0.00 0.00 4.06
2603 2887 4.191544 TGTACATTCTTCTAGCCATGCAC 58.808 43.478 0.00 0.00 0.00 4.57
2604 2888 3.354948 ACATTCTTCTAGCCATGCACA 57.645 42.857 0.00 0.00 0.00 4.57
2605 2889 3.012518 ACATTCTTCTAGCCATGCACAC 58.987 45.455 0.00 0.00 0.00 3.82
2606 2890 1.725641 TTCTTCTAGCCATGCACACG 58.274 50.000 0.00 0.00 0.00 4.49
2608 2892 1.002366 CTTCTAGCCATGCACACGAC 58.998 55.000 0.00 0.00 0.00 4.34
2626 2952 3.119101 ACGACATGTGTGGTATCTTCTCC 60.119 47.826 1.15 0.00 35.21 3.71
2628 2954 3.452627 GACATGTGTGGTATCTTCTCCCT 59.547 47.826 1.15 0.00 0.00 4.20
2631 2957 4.603094 TGTGTGGTATCTTCTCCCTCTA 57.397 45.455 0.00 0.00 0.00 2.43
2634 2960 4.896482 GTGTGGTATCTTCTCCCTCTACAT 59.104 45.833 0.00 0.00 0.00 2.29
2635 2961 6.069331 GTGTGGTATCTTCTCCCTCTACATA 58.931 44.000 0.00 0.00 0.00 2.29
2636 2962 6.550108 GTGTGGTATCTTCTCCCTCTACATAA 59.450 42.308 0.00 0.00 0.00 1.90
2637 2963 7.069578 GTGTGGTATCTTCTCCCTCTACATAAA 59.930 40.741 0.00 0.00 0.00 1.40
2638 2964 7.789831 TGTGGTATCTTCTCCCTCTACATAAAT 59.210 37.037 0.00 0.00 0.00 1.40
2639 2965 8.308207 GTGGTATCTTCTCCCTCTACATAAATC 58.692 40.741 0.00 0.00 0.00 2.17
2640 2966 8.235230 TGGTATCTTCTCCCTCTACATAAATCT 58.765 37.037 0.00 0.00 0.00 2.40
2687 3013 3.621682 AAATGGAACTTTACCCCCACA 57.378 42.857 0.00 0.00 0.00 4.17
2695 3021 5.510690 GGAACTTTACCCCCACAAAGAAATG 60.511 44.000 1.36 0.00 35.70 2.32
2696 3022 4.552674 ACTTTACCCCCACAAAGAAATGT 58.447 39.130 1.36 0.00 35.70 2.71
2698 3024 5.069914 ACTTTACCCCCACAAAGAAATGTTC 59.930 40.000 1.36 0.00 35.70 3.18
2717 3101 6.764308 TGTTCTGAGGAAATCATGGAATTC 57.236 37.500 0.00 0.00 37.28 2.17
2721 3105 6.118170 TCTGAGGAAATCATGGAATTCTGTC 58.882 40.000 5.23 0.00 37.28 3.51
2726 3110 7.348815 AGGAAATCATGGAATTCTGTCATGTA 58.651 34.615 17.42 9.03 39.25 2.29
2729 3113 9.674824 GAAATCATGGAATTCTGTCATGTATTC 57.325 33.333 17.42 17.17 39.25 1.75
2742 3126 9.460019 TCTGTCATGTATTCACCATTTATTTCA 57.540 29.630 0.00 0.00 0.00 2.69
2744 3128 9.460019 TGTCATGTATTCACCATTTATTTCAGA 57.540 29.630 0.00 0.00 0.00 3.27
2819 3440 1.094785 AAATGCCATGCAGTACGTCC 58.905 50.000 0.00 0.00 43.65 4.79
2831 3452 3.885297 GCAGTACGTCCTGGGTATACTTA 59.115 47.826 10.38 0.00 32.92 2.24
2847 3472 7.990886 GGGTATACTTATTCCAACAGATGTGAA 59.009 37.037 2.25 0.00 0.00 3.18
2848 3473 9.561069 GGTATACTTATTCCAACAGATGTGAAT 57.439 33.333 2.25 4.55 34.96 2.57
2864 3489 9.499585 CAGATGTGAATTAATGCTAGTCTTTTG 57.500 33.333 0.00 0.00 0.00 2.44
2867 3498 5.739161 GTGAATTAATGCTAGTCTTTTGCCG 59.261 40.000 0.00 0.00 0.00 5.69
2875 3506 0.608308 AGTCTTTTGCCGCCTTACCC 60.608 55.000 0.00 0.00 0.00 3.69
2876 3507 0.608308 GTCTTTTGCCGCCTTACCCT 60.608 55.000 0.00 0.00 0.00 4.34
2877 3508 0.608035 TCTTTTGCCGCCTTACCCTG 60.608 55.000 0.00 0.00 0.00 4.45
2878 3509 0.608035 CTTTTGCCGCCTTACCCTGA 60.608 55.000 0.00 0.00 0.00 3.86
2881 3512 2.824489 GCCGCCTTACCCTGAAGC 60.824 66.667 0.00 0.00 0.00 3.86
2882 3513 2.124695 CCGCCTTACCCTGAAGCC 60.125 66.667 0.00 0.00 0.00 4.35
2884 3515 1.224592 CGCCTTACCCTGAAGCCAT 59.775 57.895 0.00 0.00 0.00 4.40
2888 3519 2.106511 GCCTTACCCTGAAGCCATCATA 59.893 50.000 0.00 0.00 37.44 2.15
2889 3520 3.808618 GCCTTACCCTGAAGCCATCATAG 60.809 52.174 0.00 0.00 37.44 2.23
2902 3533 3.947868 CCATCATAGGCAGGAGTAATGG 58.052 50.000 0.00 0.00 0.00 3.16
2905 3536 5.426504 CATCATAGGCAGGAGTAATGGATC 58.573 45.833 0.00 0.00 0.00 3.36
2906 3537 4.756564 TCATAGGCAGGAGTAATGGATCT 58.243 43.478 0.00 0.00 0.00 2.75
2907 3538 4.529769 TCATAGGCAGGAGTAATGGATCTG 59.470 45.833 0.00 0.00 0.00 2.90
2908 3539 2.769209 AGGCAGGAGTAATGGATCTGT 58.231 47.619 0.00 0.00 0.00 3.41
2911 3542 3.494048 GGCAGGAGTAATGGATCTGTCAG 60.494 52.174 0.00 0.00 31.19 3.51
2912 3543 3.494048 GCAGGAGTAATGGATCTGTCAGG 60.494 52.174 0.00 0.00 0.00 3.86
2913 3544 3.963374 CAGGAGTAATGGATCTGTCAGGA 59.037 47.826 0.00 0.00 0.00 3.86
2914 3545 4.406972 CAGGAGTAATGGATCTGTCAGGAA 59.593 45.833 0.00 0.00 0.00 3.36
2915 3546 4.407296 AGGAGTAATGGATCTGTCAGGAAC 59.593 45.833 0.00 0.00 0.00 3.62
2916 3547 4.407296 GGAGTAATGGATCTGTCAGGAACT 59.593 45.833 0.00 0.00 43.88 3.01
2918 3549 6.380079 AGTAATGGATCTGTCAGGAACTTT 57.620 37.500 0.00 0.00 34.60 2.66
2919 3550 7.364762 GGAGTAATGGATCTGTCAGGAACTTTA 60.365 40.741 0.00 0.00 34.60 1.85
2921 3552 8.043710 AGTAATGGATCTGTCAGGAACTTTAAG 58.956 37.037 0.00 0.00 34.60 1.85
2923 3554 6.627087 TGGATCTGTCAGGAACTTTAAGAT 57.373 37.500 0.00 0.00 34.60 2.40
2925 3556 5.819901 GGATCTGTCAGGAACTTTAAGATGG 59.180 44.000 0.00 0.00 34.60 3.51
2927 3558 6.928348 TCTGTCAGGAACTTTAAGATGGTA 57.072 37.500 0.00 0.00 34.60 3.25
2928 3559 7.311092 TCTGTCAGGAACTTTAAGATGGTAA 57.689 36.000 0.00 0.00 34.60 2.85
2931 3562 8.335532 TGTCAGGAACTTTAAGATGGTAAATG 57.664 34.615 0.00 0.00 34.60 2.32
2932 3563 8.160765 TGTCAGGAACTTTAAGATGGTAAATGA 58.839 33.333 0.00 0.00 34.60 2.57
2933 3564 8.451748 GTCAGGAACTTTAAGATGGTAAATGAC 58.548 37.037 0.00 0.00 34.60 3.06
2934 3565 7.610305 TCAGGAACTTTAAGATGGTAAATGACC 59.390 37.037 0.00 0.00 44.07 4.02
2935 3566 7.611855 CAGGAACTTTAAGATGGTAAATGACCT 59.388 37.037 0.00 0.00 44.13 3.85
2936 3567 7.611855 AGGAACTTTAAGATGGTAAATGACCTG 59.388 37.037 0.00 0.00 43.61 4.00
2948 3579 5.992217 GGTAAATGACCTGCTATAGACTTGG 59.008 44.000 3.21 1.86 45.89 3.61
2949 3580 4.696479 AATGACCTGCTATAGACTTGGG 57.304 45.455 3.21 0.13 0.00 4.12
2950 3581 3.398318 TGACCTGCTATAGACTTGGGA 57.602 47.619 3.21 0.00 0.00 4.37
3154 4104 5.243060 TCTTCAACGGATCTCAAGTTAGTCA 59.757 40.000 0.00 0.00 0.00 3.41
3156 4106 6.037786 TCAACGGATCTCAAGTTAGTCAAT 57.962 37.500 0.00 0.00 0.00 2.57
3157 4107 6.464222 TCAACGGATCTCAAGTTAGTCAATT 58.536 36.000 0.00 0.00 0.00 2.32
3164 4114 6.327279 TCTCAAGTTAGTCAATTGTCTCGA 57.673 37.500 8.52 0.00 0.00 4.04
3170 4120 2.263077 AGTCAATTGTCTCGACGATGC 58.737 47.619 5.13 0.00 35.67 3.91
3171 4121 1.992667 GTCAATTGTCTCGACGATGCA 59.007 47.619 5.13 0.00 35.67 3.96
3215 4165 6.681777 AGGTTGTCTCATGATTTTACTTTGC 58.318 36.000 0.00 0.00 0.00 3.68
3266 4236 3.505836 GCTTATTTGCAGTCAAGGAAGC 58.494 45.455 8.93 8.93 40.84 3.86
3268 4238 4.396166 GCTTATTTGCAGTCAAGGAAGCTA 59.604 41.667 13.79 0.00 42.39 3.32
3281 4251 4.199432 AGGAAGCTATATGAATCTGCCG 57.801 45.455 0.00 0.00 29.36 5.69
3288 4258 4.083802 GCTATATGAATCTGCCGTTTGTCC 60.084 45.833 0.00 0.00 0.00 4.02
3290 4260 1.522668 TGAATCTGCCGTTTGTCCTG 58.477 50.000 0.00 0.00 0.00 3.86
3295 4265 0.535102 CTGCCGTTTGTCCTGAACCT 60.535 55.000 0.00 0.00 0.00 3.50
3296 4266 0.817634 TGCCGTTTGTCCTGAACCTG 60.818 55.000 0.00 0.00 0.00 4.00
3317 4287 4.077108 TGAAATTCTCAGAGCTGCATTGT 58.923 39.130 1.02 0.00 0.00 2.71
3320 4290 2.090400 TCTCAGAGCTGCATTGTCAC 57.910 50.000 1.02 0.00 0.00 3.67
3322 4292 2.038164 TCTCAGAGCTGCATTGTCACTT 59.962 45.455 1.02 0.00 0.00 3.16
3324 4294 1.199327 CAGAGCTGCATTGTCACTTGG 59.801 52.381 1.02 0.00 0.00 3.61
3336 4306 2.957680 TGTCACTTGGTGATTTGCATGT 59.042 40.909 3.67 0.00 44.63 3.21
3342 4312 1.343789 TGGTGATTTGCATGTTGGTGG 59.656 47.619 0.00 0.00 0.00 4.61
3343 4313 1.617850 GGTGATTTGCATGTTGGTGGA 59.382 47.619 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
158 160 5.368989 AGTTTCTGGTCAGTAACTTTGAGG 58.631 41.667 14.43 0.00 43.48 3.86
286 288 2.203983 TCTTCCCTCAGGCCAGCA 60.204 61.111 5.01 0.00 0.00 4.41
335 337 2.432456 GTCGACACGCAGGCATGA 60.432 61.111 11.55 0.00 0.00 3.07
644 649 2.134933 TGGACACCTGTACACGGCA 61.135 57.895 10.26 0.30 33.08 5.69
753 760 1.495951 GGTTTCCTACGCGCTTGTG 59.504 57.895 5.73 0.00 0.00 3.33
804 811 5.474876 ACCAGGTCACATTCAAATCTCTTTC 59.525 40.000 0.00 0.00 0.00 2.62
819 826 0.984995 AGCCTAGGAAACCAGGTCAC 59.015 55.000 14.75 0.00 34.18 3.67
824 831 4.843728 TCATGTTTAGCCTAGGAAACCAG 58.156 43.478 14.75 10.10 35.17 4.00
842 849 2.349275 GCAACCCGCAATTTCAATCATG 59.651 45.455 0.00 0.00 41.79 3.07
844 851 1.337635 GGCAACCCGCAATTTCAATCA 60.338 47.619 0.00 0.00 45.17 2.57
859 866 1.555477 CGACAACAGTTTTGGGCAAC 58.445 50.000 0.00 0.00 0.00 4.17
872 879 1.291132 GAATAGGAGGCAGCGACAAC 58.709 55.000 0.00 0.00 0.00 3.32
873 880 0.178068 GGAATAGGAGGCAGCGACAA 59.822 55.000 0.00 0.00 0.00 3.18
874 881 0.687757 AGGAATAGGAGGCAGCGACA 60.688 55.000 0.00 0.00 0.00 4.35
895 902 8.376028 GTGTAACAGACCACAAAGTGTGACTAT 61.376 40.741 9.92 4.82 43.91 2.12
908 915 2.756760 TCCCGATAGTGTAACAGACCAC 59.243 50.000 0.00 0.00 41.43 4.16
911 918 4.082354 ACAAGTCCCGATAGTGTAACAGAC 60.082 45.833 0.00 0.00 41.43 3.51
919 926 3.952323 TCTTCCTACAAGTCCCGATAGTG 59.048 47.826 0.00 0.00 0.00 2.74
924 931 1.076677 ACCTCTTCCTACAAGTCCCGA 59.923 52.381 0.00 0.00 0.00 5.14
925 932 1.477295 GACCTCTTCCTACAAGTCCCG 59.523 57.143 0.00 0.00 0.00 5.14
939 946 1.003646 TCTAGCTCCACCAGACCTCT 58.996 55.000 0.00 0.00 0.00 3.69
948 955 3.377485 TCGTGTGAGTAATCTAGCTCCAC 59.623 47.826 0.00 0.00 33.59 4.02
949 956 3.617284 TCGTGTGAGTAATCTAGCTCCA 58.383 45.455 0.00 0.00 0.00 3.86
952 959 5.836821 TGATTCGTGTGAGTAATCTAGCT 57.163 39.130 0.00 0.00 32.12 3.32
954 961 5.460419 GGCTTGATTCGTGTGAGTAATCTAG 59.540 44.000 0.00 0.00 36.32 2.43
978 985 4.245660 TCACTTCCTTCTATGCTCAAACG 58.754 43.478 0.00 0.00 0.00 3.60
979 986 5.448360 GCATCACTTCCTTCTATGCTCAAAC 60.448 44.000 0.00 0.00 39.80 2.93
985 992 3.808726 CAGAGCATCACTTCCTTCTATGC 59.191 47.826 0.00 0.00 42.52 3.14
1012 1019 6.007076 CCAAGACTGTCTCATCTAGGCTATA 58.993 44.000 11.31 0.00 0.00 1.31
1013 1020 4.832266 CCAAGACTGTCTCATCTAGGCTAT 59.168 45.833 11.31 0.00 0.00 2.97
1014 1021 4.211125 CCAAGACTGTCTCATCTAGGCTA 58.789 47.826 11.31 0.00 0.00 3.93
1015 1022 3.030291 CCAAGACTGTCTCATCTAGGCT 58.970 50.000 11.31 0.00 0.00 4.58
1037 1044 7.380431 TGTAGTTGGGTTAAATTATGGAACG 57.620 36.000 0.00 0.00 0.00 3.95
1065 1073 6.935167 AGGTGGGCAATTTTTAATAGTCAAG 58.065 36.000 0.00 0.00 0.00 3.02
1069 1077 5.422012 CCAGAGGTGGGCAATTTTTAATAGT 59.578 40.000 0.00 0.00 40.67 2.12
1070 1078 5.906073 CCAGAGGTGGGCAATTTTTAATAG 58.094 41.667 0.00 0.00 40.67 1.73
1089 1097 0.034896 GAAGGTGTTTCTCCGCCAGA 59.965 55.000 0.00 0.00 37.47 3.86
1095 1103 3.569701 TCAGCATTTGAAGGTGTTTCTCC 59.430 43.478 0.00 0.00 36.71 3.71
1102 1110 1.466167 CGAGGTCAGCATTTGAAGGTG 59.534 52.381 0.00 0.00 37.61 4.00
1105 1113 2.807967 TCAACGAGGTCAGCATTTGAAG 59.192 45.455 0.00 0.00 37.61 3.02
1116 1124 0.109226 CGAGGGTCTTCAACGAGGTC 60.109 60.000 0.00 0.00 0.00 3.85
1130 1138 3.722147 CTTGAACCATCTATGTCGAGGG 58.278 50.000 0.00 0.00 40.54 4.30
1137 1145 5.991328 ACGTAATGCTTGAACCATCTATG 57.009 39.130 0.00 0.00 0.00 2.23
1157 1165 1.228124 TCCCCAACTTGCTGGAACG 60.228 57.895 0.00 0.00 38.96 3.95
1161 1169 2.677875 GCCTCCCCAACTTGCTGG 60.678 66.667 0.00 0.00 36.10 4.85
1162 1170 2.677875 GGCCTCCCCAACTTGCTG 60.678 66.667 0.00 0.00 0.00 4.41
1163 1171 4.351054 CGGCCTCCCCAACTTGCT 62.351 66.667 0.00 0.00 0.00 3.91
1164 1172 4.660938 ACGGCCTCCCCAACTTGC 62.661 66.667 0.00 0.00 0.00 4.01
1165 1173 1.971695 GAACGGCCTCCCCAACTTG 60.972 63.158 0.00 0.00 0.00 3.16
1166 1174 1.716028 AAGAACGGCCTCCCCAACTT 61.716 55.000 0.00 0.00 0.00 2.66
1168 1176 1.228459 AAAGAACGGCCTCCCCAAC 60.228 57.895 0.00 0.00 0.00 3.77
1169 1177 1.228429 CAAAGAACGGCCTCCCCAA 60.228 57.895 0.00 0.00 0.00 4.12
1170 1178 2.434331 CAAAGAACGGCCTCCCCA 59.566 61.111 0.00 0.00 0.00 4.96
1172 1180 3.062466 GCCAAAGAACGGCCTCCC 61.062 66.667 0.00 0.00 44.22 4.30
1178 1186 1.172180 TGGAAGCTGCCAAAGAACGG 61.172 55.000 12.48 0.00 34.31 4.44
1179 1187 0.239347 CTGGAAGCTGCCAAAGAACG 59.761 55.000 16.33 0.00 37.52 3.95
1180 1188 1.322442 ACTGGAAGCTGCCAAAGAAC 58.678 50.000 16.33 0.00 37.52 3.01
1181 1189 2.071778 AACTGGAAGCTGCCAAAGAA 57.928 45.000 16.33 0.00 37.52 2.52
1182 1190 2.884639 GTTAACTGGAAGCTGCCAAAGA 59.115 45.455 16.33 0.00 37.52 2.52
1183 1191 2.622942 TGTTAACTGGAAGCTGCCAAAG 59.377 45.455 16.33 6.67 37.52 2.77
1184 1192 2.622942 CTGTTAACTGGAAGCTGCCAAA 59.377 45.455 16.33 3.13 37.52 3.28
1185 1193 2.229792 CTGTTAACTGGAAGCTGCCAA 58.770 47.619 16.33 0.00 37.52 4.52
1205 1213 4.646492 TCCACCTACCGTTTATCTCTAACC 59.354 45.833 0.00 0.00 0.00 2.85
1206 1214 5.359292 ACTCCACCTACCGTTTATCTCTAAC 59.641 44.000 0.00 0.00 0.00 2.34
1211 1219 2.764572 CCACTCCACCTACCGTTTATCT 59.235 50.000 0.00 0.00 0.00 1.98
1216 1224 1.553706 CTACCACTCCACCTACCGTT 58.446 55.000 0.00 0.00 0.00 4.44
1217 1225 0.969409 GCTACCACTCCACCTACCGT 60.969 60.000 0.00 0.00 0.00 4.83
1218 1226 0.683504 AGCTACCACTCCACCTACCG 60.684 60.000 0.00 0.00 0.00 4.02
1219 1227 0.824759 CAGCTACCACTCCACCTACC 59.175 60.000 0.00 0.00 0.00 3.18
1220 1228 0.824759 CCAGCTACCACTCCACCTAC 59.175 60.000 0.00 0.00 0.00 3.18
1221 1229 0.708209 TCCAGCTACCACTCCACCTA 59.292 55.000 0.00 0.00 0.00 3.08
1222 1230 0.178903 TTCCAGCTACCACTCCACCT 60.179 55.000 0.00 0.00 0.00 4.00
1228 1236 1.625818 CACTTCCTTCCAGCTACCACT 59.374 52.381 0.00 0.00 0.00 4.00
1246 1254 3.437395 AGATGAGTGAGTAGACGTGTCAC 59.563 47.826 0.00 0.24 40.82 3.67
1260 1268 1.682854 GAGAGCTCAGGGAGATGAGTG 59.317 57.143 17.77 0.00 46.93 3.51
1261 1269 1.570501 AGAGAGCTCAGGGAGATGAGT 59.429 52.381 17.77 0.00 46.93 3.41
1282 1290 4.408921 TCCCCTTCCACATATAGACAAGTG 59.591 45.833 0.00 0.00 0.00 3.16
1283 1291 4.631234 TCCCCTTCCACATATAGACAAGT 58.369 43.478 0.00 0.00 0.00 3.16
1289 1297 4.840680 TCTCACATCCCCTTCCACATATAG 59.159 45.833 0.00 0.00 0.00 1.31
1294 1302 1.630369 CTTCTCACATCCCCTTCCACA 59.370 52.381 0.00 0.00 0.00 4.17
1295 1303 1.065126 CCTTCTCACATCCCCTTCCAC 60.065 57.143 0.00 0.00 0.00 4.02
1297 1305 1.290134 ACCTTCTCACATCCCCTTCC 58.710 55.000 0.00 0.00 0.00 3.46
1298 1306 4.164221 TCAATACCTTCTCACATCCCCTTC 59.836 45.833 0.00 0.00 0.00 3.46
1299 1307 4.080299 GTCAATACCTTCTCACATCCCCTT 60.080 45.833 0.00 0.00 0.00 3.95
1300 1308 3.456277 GTCAATACCTTCTCACATCCCCT 59.544 47.826 0.00 0.00 0.00 4.79
1302 1310 4.446371 CTGTCAATACCTTCTCACATCCC 58.554 47.826 0.00 0.00 0.00 3.85
1304 1312 4.080863 ACCCTGTCAATACCTTCTCACATC 60.081 45.833 0.00 0.00 0.00 3.06
1305 1313 3.846588 ACCCTGTCAATACCTTCTCACAT 59.153 43.478 0.00 0.00 0.00 3.21
1306 1314 3.248024 ACCCTGTCAATACCTTCTCACA 58.752 45.455 0.00 0.00 0.00 3.58
1307 1315 3.983044 ACCCTGTCAATACCTTCTCAC 57.017 47.619 0.00 0.00 0.00 3.51
1308 1316 3.009033 CCAACCCTGTCAATACCTTCTCA 59.991 47.826 0.00 0.00 0.00 3.27
1309 1317 3.610911 CCAACCCTGTCAATACCTTCTC 58.389 50.000 0.00 0.00 0.00 2.87
1310 1318 2.308866 CCCAACCCTGTCAATACCTTCT 59.691 50.000 0.00 0.00 0.00 2.85
1311 1319 2.723273 CCCAACCCTGTCAATACCTTC 58.277 52.381 0.00 0.00 0.00 3.46
1312 1320 1.272480 GCCCAACCCTGTCAATACCTT 60.272 52.381 0.00 0.00 0.00 3.50
1315 1323 0.331616 AGGCCCAACCCTGTCAATAC 59.668 55.000 0.00 0.00 40.58 1.89
1317 1325 1.077265 CAGGCCCAACCCTGTCAAT 59.923 57.895 0.00 0.00 45.87 2.57
1333 1341 0.592247 GTTTGTTGCTGCACGTCCAG 60.592 55.000 0.88 0.88 35.93 3.86
1378 1395 5.787380 TGTTCTATATGTATCCTGCTGCTG 58.213 41.667 0.00 0.00 0.00 4.41
1379 1396 6.183361 TGTTGTTCTATATGTATCCTGCTGCT 60.183 38.462 0.00 0.00 0.00 4.24
1380 1397 5.991606 TGTTGTTCTATATGTATCCTGCTGC 59.008 40.000 0.00 0.00 0.00 5.25
1392 1409 8.321353 TCTTGTTGTGGATCTGTTGTTCTATAT 58.679 33.333 0.00 0.00 0.00 0.86
1396 1413 4.780815 TCTTGTTGTGGATCTGTTGTTCT 58.219 39.130 0.00 0.00 0.00 3.01
1402 1419 4.393062 CGCTATTTCTTGTTGTGGATCTGT 59.607 41.667 0.00 0.00 0.00 3.41
1409 1426 2.483877 TCCTGCGCTATTTCTTGTTGTG 59.516 45.455 9.73 0.00 0.00 3.33
1439 1456 6.830912 TCTTCTCTTTCTTCTTCATCCACAA 58.169 36.000 0.00 0.00 0.00 3.33
1446 1463 6.153067 GTCGTCATCTTCTCTTTCTTCTTCA 58.847 40.000 0.00 0.00 0.00 3.02
1450 1467 4.555747 GTCGTCGTCATCTTCTCTTTCTTC 59.444 45.833 0.00 0.00 0.00 2.87
1456 1473 0.727970 CCGTCGTCGTCATCTTCTCT 59.272 55.000 0.71 0.00 35.01 3.10
1473 1502 2.512515 GGTAAGAGCAGCAGCCCG 60.513 66.667 0.00 0.00 43.56 6.13
1492 1521 1.749334 GAGTAGGACAGATGGGCCGG 61.749 65.000 0.00 0.00 0.00 6.13
1493 1522 0.757188 AGAGTAGGACAGATGGGCCG 60.757 60.000 0.00 0.00 0.00 6.13
1494 1523 1.044611 GAGAGTAGGACAGATGGGCC 58.955 60.000 0.00 0.00 0.00 5.80
1495 1524 1.960689 GAGAGAGTAGGACAGATGGGC 59.039 57.143 0.00 0.00 0.00 5.36
1503 1532 3.020984 CAACTCCTGGAGAGAGTAGGAC 58.979 54.545 29.71 0.00 46.50 3.85
1525 1554 2.208431 CTCTGGACAATCTTCGATGCC 58.792 52.381 0.00 0.00 0.00 4.40
1527 1556 3.176552 AGCTCTGGACAATCTTCGATG 57.823 47.619 0.00 0.00 0.00 3.84
1531 1560 3.006247 GGACAAGCTCTGGACAATCTTC 58.994 50.000 0.00 0.00 0.00 2.87
1533 1562 2.235898 GAGGACAAGCTCTGGACAATCT 59.764 50.000 0.00 0.00 0.00 2.40
1534 1563 2.027745 TGAGGACAAGCTCTGGACAATC 60.028 50.000 0.00 0.00 0.00 2.67
1541 1570 0.108233 GCTCCTGAGGACAAGCTCTG 60.108 60.000 0.00 0.00 30.08 3.35
1545 1574 1.376553 GTGGCTCCTGAGGACAAGC 60.377 63.158 0.00 0.00 31.40 4.01
1554 1583 4.087892 CCTGTCCCGTGGCTCCTG 62.088 72.222 0.00 0.00 0.00 3.86
1557 1598 2.997897 AGACCTGTCCCGTGGCTC 60.998 66.667 0.00 0.00 0.00 4.70
1562 1603 0.321653 GAATTGCAGACCTGTCCCGT 60.322 55.000 0.00 0.00 0.00 5.28
1580 1627 1.133181 TGTGTTGAGGGAGCCCATGA 61.133 55.000 8.53 0.00 38.92 3.07
1595 1642 3.316308 GGCAGACAAGAAGTTCATTGTGT 59.684 43.478 19.04 14.59 39.66 3.72
1596 1643 3.567164 AGGCAGACAAGAAGTTCATTGTG 59.433 43.478 19.04 8.97 39.66 3.33
1598 1645 4.543692 CAAGGCAGACAAGAAGTTCATTG 58.456 43.478 5.50 9.14 0.00 2.82
1602 1649 2.851195 TCCAAGGCAGACAAGAAGTTC 58.149 47.619 0.00 0.00 0.00 3.01
1603 1650 3.073650 AGATCCAAGGCAGACAAGAAGTT 59.926 43.478 0.00 0.00 0.00 2.66
1605 1652 3.055240 AGAGATCCAAGGCAGACAAGAAG 60.055 47.826 0.00 0.00 0.00 2.85
1606 1653 2.909006 AGAGATCCAAGGCAGACAAGAA 59.091 45.455 0.00 0.00 0.00 2.52
1608 1655 2.630158 CAGAGATCCAAGGCAGACAAG 58.370 52.381 0.00 0.00 0.00 3.16
1609 1656 1.339438 GCAGAGATCCAAGGCAGACAA 60.339 52.381 0.00 0.00 0.00 3.18
1611 1658 0.463474 GGCAGAGATCCAAGGCAGAC 60.463 60.000 0.00 0.00 0.00 3.51
1612 1659 1.630126 GGGCAGAGATCCAAGGCAGA 61.630 60.000 5.12 0.00 0.00 4.26
1613 1660 1.153005 GGGCAGAGATCCAAGGCAG 60.153 63.158 5.12 0.00 0.00 4.85
1615 1662 0.033699 AAAGGGCAGAGATCCAAGGC 60.034 55.000 0.00 0.00 0.00 4.35
1619 1686 1.626356 CGGGAAAGGGCAGAGATCCA 61.626 60.000 0.00 0.00 31.63 3.41
1642 1718 2.679716 GCTGAGGGATTGCAGGGT 59.320 61.111 0.00 0.00 32.83 4.34
1658 1734 0.181350 CTCCATACCACCTCCAAGGC 59.819 60.000 0.00 0.00 39.63 4.35
1669 1745 0.398318 GTCTCCATGCCCTCCATACC 59.602 60.000 0.00 0.00 31.47 2.73
1724 1800 2.223479 CCCAAATCCCGAATGCTTAACG 60.223 50.000 0.00 0.00 0.00 3.18
1735 1811 0.687427 AAAGCATCCCCCAAATCCCG 60.687 55.000 0.00 0.00 0.00 5.14
1751 1827 0.165944 CAAGCCGTCGCACCTAAAAG 59.834 55.000 0.00 0.00 37.52 2.27
1768 1844 0.840288 TGGGTAAGGAGAGGCAGCAA 60.840 55.000 0.00 0.00 0.00 3.91
1889 2001 0.037790 TGTTGCGATGTCATCCGTCA 60.038 50.000 7.25 0.77 0.00 4.35
1912 2024 1.748879 GGCAGATGGGCGCAGTTAA 60.749 57.895 10.83 0.00 33.57 2.01
1966 2078 4.000331 AGCGATCCACCTCTTTATCATG 58.000 45.455 0.00 0.00 0.00 3.07
1971 2086 2.418746 GCTGAAGCGATCCACCTCTTTA 60.419 50.000 0.00 0.00 0.00 1.85
1983 2101 0.952497 CTTGCTCCTTGCTGAAGCGA 60.952 55.000 0.00 0.00 45.83 4.93
2036 2154 0.320683 GCACCACCCAAATTTGAGCC 60.321 55.000 19.86 0.00 0.00 4.70
2079 2197 0.453950 GCTTGTGCAGCGACTTCATG 60.454 55.000 0.00 0.00 39.29 3.07
2080 2198 1.871772 GCTTGTGCAGCGACTTCAT 59.128 52.632 0.00 0.00 39.29 2.57
2081 2199 3.333414 GCTTGTGCAGCGACTTCA 58.667 55.556 0.00 0.00 39.29 3.02
2125 2384 0.904649 CTCATGGCTGGACAGTACCA 59.095 55.000 0.82 1.44 38.33 3.25
2128 2387 1.195115 GACCTCATGGCTGGACAGTA 58.805 55.000 0.82 0.00 36.63 2.74
2129 2388 1.892819 CGACCTCATGGCTGGACAGT 61.893 60.000 0.82 0.00 36.63 3.55
2170 2429 1.203523 CTCTAACTCTTGCAGCGAGGT 59.796 52.381 9.98 13.43 32.83 3.85
2171 2430 1.470632 CCTCTAACTCTTGCAGCGAGG 60.471 57.143 9.98 2.16 32.83 4.63
2172 2431 1.203523 ACCTCTAACTCTTGCAGCGAG 59.796 52.381 2.75 2.75 34.70 5.03
2173 2432 1.202582 GACCTCTAACTCTTGCAGCGA 59.797 52.381 0.00 0.00 0.00 4.93
2174 2433 1.203523 AGACCTCTAACTCTTGCAGCG 59.796 52.381 0.00 0.00 0.00 5.18
2175 2434 3.258228 GAAGACCTCTAACTCTTGCAGC 58.742 50.000 0.00 0.00 0.00 5.25
2176 2435 4.219507 TCTGAAGACCTCTAACTCTTGCAG 59.780 45.833 0.00 0.00 0.00 4.41
2177 2436 4.152647 TCTGAAGACCTCTAACTCTTGCA 58.847 43.478 0.00 0.00 0.00 4.08
2178 2437 4.792521 TCTGAAGACCTCTAACTCTTGC 57.207 45.455 0.00 0.00 0.00 4.01
2179 2438 5.108517 GCATCTGAAGACCTCTAACTCTTG 58.891 45.833 0.00 0.00 0.00 3.02
2180 2439 4.774726 TGCATCTGAAGACCTCTAACTCTT 59.225 41.667 0.00 0.00 0.00 2.85
2181 2440 4.159506 GTGCATCTGAAGACCTCTAACTCT 59.840 45.833 0.00 0.00 0.00 3.24
2182 2441 4.429108 GTGCATCTGAAGACCTCTAACTC 58.571 47.826 0.00 0.00 0.00 3.01
2183 2442 3.196685 GGTGCATCTGAAGACCTCTAACT 59.803 47.826 0.00 0.00 0.00 2.24
2184 2443 3.055819 TGGTGCATCTGAAGACCTCTAAC 60.056 47.826 0.00 0.00 0.00 2.34
2185 2444 3.173151 TGGTGCATCTGAAGACCTCTAA 58.827 45.455 0.00 0.00 0.00 2.10
2186 2445 2.820178 TGGTGCATCTGAAGACCTCTA 58.180 47.619 0.00 0.00 0.00 2.43
2187 2446 1.649321 TGGTGCATCTGAAGACCTCT 58.351 50.000 0.00 0.00 0.00 3.69
2188 2447 2.079925 GTTGGTGCATCTGAAGACCTC 58.920 52.381 0.00 0.00 0.00 3.85
2189 2448 1.271597 GGTTGGTGCATCTGAAGACCT 60.272 52.381 0.00 0.00 0.00 3.85
2190 2449 1.168714 GGTTGGTGCATCTGAAGACC 58.831 55.000 0.00 0.00 0.00 3.85
2191 2450 2.079925 GAGGTTGGTGCATCTGAAGAC 58.920 52.381 0.00 0.00 0.00 3.01
2192 2451 1.003580 GGAGGTTGGTGCATCTGAAGA 59.996 52.381 0.00 0.00 0.00 2.87
2193 2452 1.457346 GGAGGTTGGTGCATCTGAAG 58.543 55.000 0.00 0.00 0.00 3.02
2194 2453 0.321564 CGGAGGTTGGTGCATCTGAA 60.322 55.000 0.00 0.00 0.00 3.02
2195 2454 1.296392 CGGAGGTTGGTGCATCTGA 59.704 57.895 0.00 0.00 0.00 3.27
2196 2455 3.895025 CGGAGGTTGGTGCATCTG 58.105 61.111 0.00 0.00 0.00 2.90
2209 2468 1.608717 CCTTCTGGGAGACACCGGAG 61.609 65.000 9.46 1.26 46.14 4.63
2210 2469 1.609501 CCTTCTGGGAGACACCGGA 60.610 63.158 9.46 0.00 44.05 5.14
2211 2470 2.982130 CCTTCTGGGAGACACCGG 59.018 66.667 0.00 0.00 40.11 5.28
2221 2480 2.633509 GCTTGTGCAGCCCTTCTGG 61.634 63.158 0.00 0.00 43.65 3.86
2222 2481 2.960170 GCTTGTGCAGCCCTTCTG 59.040 61.111 0.00 0.00 43.65 3.02
2230 2489 0.820891 AGGTTGGTGAGCTTGTGCAG 60.821 55.000 0.00 0.00 42.74 4.41
2231 2490 0.819259 GAGGTTGGTGAGCTTGTGCA 60.819 55.000 0.00 0.00 42.74 4.57
2232 2491 0.819259 TGAGGTTGGTGAGCTTGTGC 60.819 55.000 0.00 0.00 35.91 4.57
2233 2492 1.233019 CTGAGGTTGGTGAGCTTGTG 58.767 55.000 0.00 0.00 35.91 3.33
2234 2493 0.109342 CCTGAGGTTGGTGAGCTTGT 59.891 55.000 0.00 0.00 35.91 3.16
2235 2494 0.397941 TCCTGAGGTTGGTGAGCTTG 59.602 55.000 0.00 0.00 35.91 4.01
2236 2495 1.366319 ATCCTGAGGTTGGTGAGCTT 58.634 50.000 0.00 0.00 35.91 3.74
2237 2496 1.834263 GTATCCTGAGGTTGGTGAGCT 59.166 52.381 0.00 0.00 39.22 4.09
2238 2497 1.834263 AGTATCCTGAGGTTGGTGAGC 59.166 52.381 0.00 0.00 0.00 4.26
2239 2498 2.169352 CCAGTATCCTGAGGTTGGTGAG 59.831 54.545 0.00 0.00 41.50 3.51
2240 2499 2.187958 CCAGTATCCTGAGGTTGGTGA 58.812 52.381 0.00 0.00 41.50 4.02
2241 2500 1.909302 ACCAGTATCCTGAGGTTGGTG 59.091 52.381 15.17 3.68 41.50 4.17
2242 2501 2.344093 ACCAGTATCCTGAGGTTGGT 57.656 50.000 11.79 11.79 41.50 3.67
2243 2502 3.133003 CAGTACCAGTATCCTGAGGTTGG 59.867 52.174 0.00 5.54 41.50 3.77
2244 2503 3.769844 ACAGTACCAGTATCCTGAGGTTG 59.230 47.826 0.00 0.00 41.50 3.77
2245 2504 4.024670 GACAGTACCAGTATCCTGAGGTT 58.975 47.826 0.00 0.00 41.50 3.50
2246 2505 3.627747 GGACAGTACCAGTATCCTGAGGT 60.628 52.174 0.00 0.00 41.50 3.85
2247 2506 2.959707 GGACAGTACCAGTATCCTGAGG 59.040 54.545 0.00 0.00 41.50 3.86
2248 2507 3.632333 TGGACAGTACCAGTATCCTGAG 58.368 50.000 3.27 0.00 41.50 3.35
2249 2508 3.750501 TGGACAGTACCAGTATCCTGA 57.249 47.619 3.27 0.00 41.50 3.86
2258 2517 0.904649 CTCATGGCTGGACAGTACCA 59.095 55.000 0.82 1.44 38.33 3.25
2259 2518 0.179000 CCTCATGGCTGGACAGTACC 59.821 60.000 0.82 0.00 0.00 3.34
2260 2519 0.905357 ACCTCATGGCTGGACAGTAC 59.095 55.000 0.82 0.00 36.63 2.73
2261 2520 1.195115 GACCTCATGGCTGGACAGTA 58.805 55.000 0.82 0.00 36.63 2.74
2262 2521 1.892819 CGACCTCATGGCTGGACAGT 61.893 60.000 0.82 0.00 36.63 3.55
2263 2522 1.153489 CGACCTCATGGCTGGACAG 60.153 63.158 7.19 0.00 36.63 3.51
2264 2523 2.981302 CGACCTCATGGCTGGACA 59.019 61.111 7.19 0.00 36.63 4.02
2265 2524 2.512515 GCGACCTCATGGCTGGAC 60.513 66.667 7.19 1.39 36.63 4.02
2266 2525 2.685017 AGCGACCTCATGGCTGGA 60.685 61.111 7.19 0.00 41.50 3.86
2269 2528 4.479993 GGCAGCGACCTCATGGCT 62.480 66.667 0.00 0.00 44.38 4.75
2270 2529 4.783621 TGGCAGCGACCTCATGGC 62.784 66.667 0.00 0.00 39.75 4.40
2271 2530 1.651240 CTTTGGCAGCGACCTCATGG 61.651 60.000 0.00 0.00 39.83 3.66
2272 2531 0.674581 TCTTTGGCAGCGACCTCATG 60.675 55.000 0.00 0.00 0.00 3.07
2273 2532 0.036732 TTCTTTGGCAGCGACCTCAT 59.963 50.000 0.00 0.00 0.00 2.90
2274 2533 0.036732 ATTCTTTGGCAGCGACCTCA 59.963 50.000 0.00 0.00 0.00 3.86
2275 2534 0.449388 CATTCTTTGGCAGCGACCTC 59.551 55.000 0.00 0.00 0.00 3.85
2276 2535 0.962356 CCATTCTTTGGCAGCGACCT 60.962 55.000 0.00 0.00 39.09 3.85
2277 2536 1.508088 CCATTCTTTGGCAGCGACC 59.492 57.895 0.00 0.00 39.09 4.79
2286 2545 0.897621 GGTGGGAAGGCCATTCTTTG 59.102 55.000 5.01 0.00 38.07 2.77
2287 2546 0.786435 AGGTGGGAAGGCCATTCTTT 59.214 50.000 5.01 0.00 38.07 2.52
2288 2547 0.332972 GAGGTGGGAAGGCCATTCTT 59.667 55.000 5.01 0.00 38.07 2.52
2289 2548 1.915078 CGAGGTGGGAAGGCCATTCT 61.915 60.000 5.01 0.00 38.07 2.40
2290 2549 1.452108 CGAGGTGGGAAGGCCATTC 60.452 63.158 5.01 5.92 37.17 2.67
2291 2550 2.677228 CGAGGTGGGAAGGCCATT 59.323 61.111 5.01 0.00 35.15 3.16
2292 2551 4.115199 GCGAGGTGGGAAGGCCAT 62.115 66.667 5.01 0.00 35.15 4.40
2294 2553 4.785453 CAGCGAGGTGGGAAGGCC 62.785 72.222 0.00 0.00 0.00 5.19
2296 2555 3.551496 TTGCAGCGAGGTGGGAAGG 62.551 63.158 4.40 0.00 0.00 3.46
2297 2556 2.032528 TTGCAGCGAGGTGGGAAG 59.967 61.111 4.40 0.00 0.00 3.46
2298 2557 2.032528 CTTGCAGCGAGGTGGGAA 59.967 61.111 0.94 0.00 0.00 3.97
2299 2558 2.922503 TCTTGCAGCGAGGTGGGA 60.923 61.111 9.98 0.00 0.00 4.37
2300 2559 2.435586 CTCTTGCAGCGAGGTGGG 60.436 66.667 9.98 0.00 0.00 4.61
2301 2560 0.037326 TAACTCTTGCAGCGAGGTGG 60.037 55.000 13.96 3.63 32.83 4.61
2302 2561 1.067565 TCTAACTCTTGCAGCGAGGTG 60.068 52.381 13.96 5.99 32.83 4.00
2329 2588 3.498927 AGCTCCTCATTTTTGCAATCG 57.501 42.857 0.00 0.00 0.00 3.34
2330 2589 5.574443 GTGTTAGCTCCTCATTTTTGCAATC 59.426 40.000 0.00 0.00 0.00 2.67
2331 2590 5.010922 TGTGTTAGCTCCTCATTTTTGCAAT 59.989 36.000 0.00 0.00 0.00 3.56
2365 2633 1.147600 GATGCCCCCGATTAACCGT 59.852 57.895 0.00 0.00 0.00 4.83
2378 2654 7.044798 GTCTATAGTCTGATTAATGGGATGCC 58.955 42.308 0.00 0.00 0.00 4.40
2406 2682 8.348285 TGTTAATTACCTTGGATCAGGAAAAG 57.652 34.615 6.11 0.00 37.39 2.27
2408 2684 7.177744 GGTTGTTAATTACCTTGGATCAGGAAA 59.822 37.037 6.11 0.00 37.39 3.13
2410 2686 6.184789 GGTTGTTAATTACCTTGGATCAGGA 58.815 40.000 6.11 0.00 37.39 3.86
2411 2687 5.949354 TGGTTGTTAATTACCTTGGATCAGG 59.051 40.000 9.53 0.00 40.23 3.86
2414 2693 7.362660 GGAAGTGGTTGTTAATTACCTTGGATC 60.363 40.741 9.53 0.00 35.41 3.36
2421 2700 5.243060 AGCAAGGAAGTGGTTGTTAATTACC 59.757 40.000 2.81 2.81 34.93 2.85
2425 2704 5.869649 AAAGCAAGGAAGTGGTTGTTAAT 57.130 34.783 0.00 0.00 39.11 1.40
2426 2705 5.394773 GGAAAAGCAAGGAAGTGGTTGTTAA 60.395 40.000 0.00 0.00 39.11 2.01
2455 2734 3.304659 GCTTATTGTGTGTGTGGTCTTGG 60.305 47.826 0.00 0.00 0.00 3.61
2456 2735 3.565482 AGCTTATTGTGTGTGTGGTCTTG 59.435 43.478 0.00 0.00 0.00 3.02
2469 2748 7.097834 AGCGAAAGAAAGTAGTAGCTTATTGT 58.902 34.615 0.00 0.00 0.00 2.71
2472 2751 6.535508 CCAAGCGAAAGAAAGTAGTAGCTTAT 59.464 38.462 0.00 0.00 41.07 1.73
2473 2752 5.867716 CCAAGCGAAAGAAAGTAGTAGCTTA 59.132 40.000 0.00 0.00 41.07 3.09
2474 2753 4.691216 CCAAGCGAAAGAAAGTAGTAGCTT 59.309 41.667 0.00 0.00 43.38 3.74
2475 2754 4.246458 CCAAGCGAAAGAAAGTAGTAGCT 58.754 43.478 0.00 0.00 34.96 3.32
2476 2755 3.995048 ACCAAGCGAAAGAAAGTAGTAGC 59.005 43.478 0.00 0.00 0.00 3.58
2477 2756 6.541111 AAACCAAGCGAAAGAAAGTAGTAG 57.459 37.500 0.00 0.00 0.00 2.57
2478 2757 8.611654 ATTAAACCAAGCGAAAGAAAGTAGTA 57.388 30.769 0.00 0.00 0.00 1.82
2479 2758 6.930667 TTAAACCAAGCGAAAGAAAGTAGT 57.069 33.333 0.00 0.00 0.00 2.73
2480 2759 9.326339 GTAATTAAACCAAGCGAAAGAAAGTAG 57.674 33.333 0.00 0.00 0.00 2.57
2481 2760 8.291740 GGTAATTAAACCAAGCGAAAGAAAGTA 58.708 33.333 0.00 0.00 39.50 2.24
2482 2761 7.143340 GGTAATTAAACCAAGCGAAAGAAAGT 58.857 34.615 0.00 0.00 39.50 2.66
2483 2762 6.584942 GGGTAATTAAACCAAGCGAAAGAAAG 59.415 38.462 0.00 0.00 41.67 2.62
2484 2763 6.448852 GGGTAATTAAACCAAGCGAAAGAAA 58.551 36.000 0.00 0.00 41.67 2.52
2485 2764 5.047872 GGGGTAATTAAACCAAGCGAAAGAA 60.048 40.000 9.08 0.00 41.67 2.52
2486 2765 4.460034 GGGGTAATTAAACCAAGCGAAAGA 59.540 41.667 9.08 0.00 41.67 2.52
2487 2766 4.673320 CGGGGTAATTAAACCAAGCGAAAG 60.673 45.833 9.08 0.00 41.67 2.62
2488 2767 3.190953 CGGGGTAATTAAACCAAGCGAAA 59.809 43.478 9.08 0.00 41.67 3.46
2489 2768 2.748532 CGGGGTAATTAAACCAAGCGAA 59.251 45.455 9.08 0.00 41.67 4.70
2490 2769 2.290197 ACGGGGTAATTAAACCAAGCGA 60.290 45.455 9.08 0.00 41.67 4.93
2491 2770 2.086094 ACGGGGTAATTAAACCAAGCG 58.914 47.619 9.08 6.48 41.67 4.68
2502 2781 7.177184 AGATTAAAAGGTAACAACGGGGTAAT 58.823 34.615 0.00 0.00 41.41 1.89
2503 2782 6.541907 AGATTAAAAGGTAACAACGGGGTAA 58.458 36.000 0.00 0.00 41.41 2.85
2505 2784 4.989277 AGATTAAAAGGTAACAACGGGGT 58.011 39.130 0.00 0.00 41.41 4.95
2506 2785 5.970317 AAGATTAAAAGGTAACAACGGGG 57.030 39.130 0.00 0.00 41.41 5.73
2507 2786 7.873910 TGTTAAGATTAAAAGGTAACAACGGG 58.126 34.615 0.00 0.00 41.41 5.28
2508 2787 8.562052 ACTGTTAAGATTAAAAGGTAACAACGG 58.438 33.333 7.30 0.00 35.03 4.44
2539 2821 3.194755 TGTACGTGCAGTAGATGGAATGT 59.805 43.478 0.82 0.00 35.72 2.71
2557 2841 2.644676 GAATCCCAAGAAGCCCTGTAC 58.355 52.381 0.00 0.00 0.00 2.90
2558 2842 1.564348 GGAATCCCAAGAAGCCCTGTA 59.436 52.381 0.00 0.00 0.00 2.74
2559 2843 0.332972 GGAATCCCAAGAAGCCCTGT 59.667 55.000 0.00 0.00 0.00 4.00
2560 2844 0.332632 TGGAATCCCAAGAAGCCCTG 59.667 55.000 0.00 0.00 40.09 4.45
2575 2859 6.061022 TGGCTAGAAGAATGTACATTGGAA 57.939 37.500 25.42 5.81 0.00 3.53
2578 2862 5.297527 TGCATGGCTAGAAGAATGTACATTG 59.702 40.000 25.42 10.93 0.00 2.82
2579 2863 5.297776 GTGCATGGCTAGAAGAATGTACATT 59.702 40.000 20.93 20.93 36.17 2.71
2580 2864 4.818546 GTGCATGGCTAGAAGAATGTACAT 59.181 41.667 1.41 1.41 36.17 2.29
2604 2888 3.119101 GGAGAAGATACCACACATGTCGT 60.119 47.826 0.00 0.00 0.00 4.34
2605 2889 3.448686 GGAGAAGATACCACACATGTCG 58.551 50.000 0.00 0.00 0.00 4.35
2606 2890 3.452627 AGGGAGAAGATACCACACATGTC 59.547 47.826 0.00 0.00 0.00 3.06
2608 2892 3.708631 AGAGGGAGAAGATACCACACATG 59.291 47.826 0.00 0.00 0.00 3.21
2638 2964 9.574458 GACGTACGTACTTACCAGATATATAGA 57.426 37.037 22.87 0.00 0.00 1.98
2639 2965 8.812329 GGACGTACGTACTTACCAGATATATAG 58.188 40.741 23.43 4.61 0.00 1.31
2640 2966 8.311109 TGGACGTACGTACTTACCAGATATATA 58.689 37.037 29.57 2.80 0.00 0.86
2644 2970 4.765273 TGGACGTACGTACTTACCAGATA 58.235 43.478 29.57 4.78 0.00 1.98
2678 3004 4.141135 TCAGAACATTTCTTTGTGGGGGTA 60.141 41.667 0.00 0.00 38.11 3.69
2679 3005 2.965147 CAGAACATTTCTTTGTGGGGGT 59.035 45.455 0.00 0.00 38.11 4.95
2681 3007 3.256631 CCTCAGAACATTTCTTTGTGGGG 59.743 47.826 0.00 0.00 38.11 4.96
2687 3013 7.452501 TCCATGATTTCCTCAGAACATTTCTTT 59.547 33.333 0.00 0.00 38.11 2.52
2695 3021 6.376581 ACAGAATTCCATGATTTCCTCAGAAC 59.623 38.462 0.65 0.00 37.28 3.01
2696 3022 6.487828 ACAGAATTCCATGATTTCCTCAGAA 58.512 36.000 0.65 0.00 37.28 3.02
2698 3024 5.884232 TGACAGAATTCCATGATTTCCTCAG 59.116 40.000 0.65 0.00 37.28 3.35
2717 3101 9.726232 CTGAAATAAATGGTGAATACATGACAG 57.274 33.333 0.00 0.00 0.00 3.51
2729 3113 8.680001 TGAGATGTGATTCTGAAATAAATGGTG 58.320 33.333 0.00 0.00 0.00 4.17
2812 3433 5.536161 TGGAATAAGTATACCCAGGACGTAC 59.464 44.000 0.00 0.00 0.00 3.67
2813 3434 5.704354 TGGAATAAGTATACCCAGGACGTA 58.296 41.667 0.00 0.00 0.00 3.57
2814 3435 4.549668 TGGAATAAGTATACCCAGGACGT 58.450 43.478 0.00 0.00 0.00 4.34
2815 3436 5.163385 TGTTGGAATAAGTATACCCAGGACG 60.163 44.000 0.00 0.00 0.00 4.79
2819 3440 7.442364 CACATCTGTTGGAATAAGTATACCCAG 59.558 40.741 0.00 0.00 0.00 4.45
2831 3452 7.414222 AGCATTAATTCACATCTGTTGGAAT 57.586 32.000 0.00 0.00 30.92 3.01
2847 3472 3.066760 GGCGGCAAAAGACTAGCATTAAT 59.933 43.478 3.07 0.00 0.00 1.40
2848 3473 2.422127 GGCGGCAAAAGACTAGCATTAA 59.578 45.455 3.07 0.00 0.00 1.40
2849 3474 2.014128 GGCGGCAAAAGACTAGCATTA 58.986 47.619 3.07 0.00 0.00 1.90
2850 3475 0.811281 GGCGGCAAAAGACTAGCATT 59.189 50.000 3.07 0.00 0.00 3.56
2864 3489 2.824489 GCTTCAGGGTAAGGCGGC 60.824 66.667 0.00 0.00 0.00 6.53
2881 3512 3.584406 TCCATTACTCCTGCCTATGATGG 59.416 47.826 0.00 0.00 35.31 3.51
2882 3513 4.897509 TCCATTACTCCTGCCTATGATG 57.102 45.455 0.00 0.00 0.00 3.07
2884 3515 4.529769 CAGATCCATTACTCCTGCCTATGA 59.470 45.833 0.00 0.00 0.00 2.15
2888 3519 2.703007 GACAGATCCATTACTCCTGCCT 59.297 50.000 0.00 0.00 0.00 4.75
2889 3520 2.435805 TGACAGATCCATTACTCCTGCC 59.564 50.000 0.00 0.00 0.00 4.85
2891 3522 3.963374 TCCTGACAGATCCATTACTCCTG 59.037 47.826 3.32 0.00 0.00 3.86
2892 3523 4.271807 TCCTGACAGATCCATTACTCCT 57.728 45.455 3.32 0.00 0.00 3.69
2893 3524 4.407296 AGTTCCTGACAGATCCATTACTCC 59.593 45.833 3.32 0.00 0.00 3.85
2894 3525 5.606348 AGTTCCTGACAGATCCATTACTC 57.394 43.478 3.32 0.00 0.00 2.59
2895 3526 6.380079 AAAGTTCCTGACAGATCCATTACT 57.620 37.500 3.32 0.00 0.00 2.24
2896 3527 8.041323 TCTTAAAGTTCCTGACAGATCCATTAC 58.959 37.037 3.32 0.00 0.00 1.89
2898 3529 7.020827 TCTTAAAGTTCCTGACAGATCCATT 57.979 36.000 3.32 0.00 0.00 3.16
2899 3530 6.627087 TCTTAAAGTTCCTGACAGATCCAT 57.373 37.500 3.32 0.00 0.00 3.41
2901 3532 5.819901 CCATCTTAAAGTTCCTGACAGATCC 59.180 44.000 3.32 0.00 0.00 3.36
2902 3533 6.410540 ACCATCTTAAAGTTCCTGACAGATC 58.589 40.000 3.32 0.00 0.00 2.75
2905 3536 7.979444 TTTACCATCTTAAAGTTCCTGACAG 57.021 36.000 0.00 0.00 0.00 3.51
2906 3537 8.160765 TCATTTACCATCTTAAAGTTCCTGACA 58.839 33.333 0.00 0.00 0.00 3.58
2907 3538 8.451748 GTCATTTACCATCTTAAAGTTCCTGAC 58.548 37.037 0.00 0.00 0.00 3.51
2908 3539 8.561738 GTCATTTACCATCTTAAAGTTCCTGA 57.438 34.615 0.00 0.00 0.00 3.86
2925 3556 5.992217 CCCAAGTCTATAGCAGGTCATTTAC 59.008 44.000 0.00 0.00 0.00 2.01
2927 3558 4.721776 TCCCAAGTCTATAGCAGGTCATTT 59.278 41.667 0.00 0.00 0.00 2.32
2928 3559 4.298626 TCCCAAGTCTATAGCAGGTCATT 58.701 43.478 0.00 0.00 0.00 2.57
2931 3562 2.036604 GCTCCCAAGTCTATAGCAGGTC 59.963 54.545 0.00 0.00 33.38 3.85
2932 3563 2.043227 GCTCCCAAGTCTATAGCAGGT 58.957 52.381 0.00 0.00 33.38 4.00
2933 3564 1.346068 GGCTCCCAAGTCTATAGCAGG 59.654 57.143 0.00 0.00 34.85 4.85
2934 3565 2.324541 AGGCTCCCAAGTCTATAGCAG 58.675 52.381 0.00 0.00 35.06 4.24
2935 3566 2.435805 CAAGGCTCCCAAGTCTATAGCA 59.564 50.000 0.00 0.00 36.07 3.49
2936 3567 2.224402 CCAAGGCTCCCAAGTCTATAGC 60.224 54.545 0.00 0.00 36.07 2.97
2938 3569 3.414759 TCCAAGGCTCCCAAGTCTATA 57.585 47.619 0.00 0.00 36.07 1.31
2939 3570 2.270434 TCCAAGGCTCCCAAGTCTAT 57.730 50.000 0.00 0.00 36.07 1.98
2941 3572 1.376649 ATTCCAAGGCTCCCAAGTCT 58.623 50.000 0.00 0.00 39.86 3.24
2942 3573 2.095461 GAATTCCAAGGCTCCCAAGTC 58.905 52.381 0.00 0.00 0.00 3.01
2945 3576 1.084018 AGGAATTCCAAGGCTCCCAA 58.916 50.000 26.22 0.00 38.89 4.12
2946 3577 0.332632 CAGGAATTCCAAGGCTCCCA 59.667 55.000 26.22 0.00 38.89 4.37
2947 3578 1.039785 GCAGGAATTCCAAGGCTCCC 61.040 60.000 26.22 2.10 38.89 4.30
2948 3579 1.039785 GGCAGGAATTCCAAGGCTCC 61.040 60.000 26.22 12.77 38.89 4.70
2949 3580 0.323725 TGGCAGGAATTCCAAGGCTC 60.324 55.000 30.23 21.24 38.84 4.70
2950 3581 0.114954 TTGGCAGGAATTCCAAGGCT 59.885 50.000 30.23 10.39 37.43 4.58
3043 3993 6.303839 AGTGCTAGATAACCAGGAACAAAAA 58.696 36.000 0.00 0.00 0.00 1.94
3044 3994 5.876357 AGTGCTAGATAACCAGGAACAAAA 58.124 37.500 0.00 0.00 0.00 2.44
3052 4002 9.330063 TGAATTTATGAAGTGCTAGATAACCAG 57.670 33.333 0.00 0.00 0.00 4.00
3082 4032 3.254892 TCGCGTGCAGTGAATAATACAA 58.745 40.909 5.77 0.00 36.26 2.41
3119 4069 6.071984 AGATCCGTTGAAGACTAGTCCATAT 58.928 40.000 19.38 3.59 0.00 1.78
3120 4070 5.446860 AGATCCGTTGAAGACTAGTCCATA 58.553 41.667 19.38 2.94 0.00 2.74
3121 4071 4.282496 AGATCCGTTGAAGACTAGTCCAT 58.718 43.478 19.38 8.87 0.00 3.41
3122 4072 3.695060 GAGATCCGTTGAAGACTAGTCCA 59.305 47.826 19.38 8.44 0.00 4.02
3138 4088 6.254589 CGAGACAATTGACTAACTTGAGATCC 59.745 42.308 13.59 0.00 0.00 3.36
3154 4104 2.078849 TGTGCATCGTCGAGACAATT 57.921 45.000 0.00 0.00 0.00 2.32
3156 4106 1.418373 CTTGTGCATCGTCGAGACAA 58.582 50.000 13.54 13.54 0.00 3.18
3157 4107 0.388520 CCTTGTGCATCGTCGAGACA 60.389 55.000 0.00 0.78 0.00 3.41
3164 4114 2.185004 AAGCTTACCTTGTGCATCGT 57.815 45.000 0.00 0.00 30.99 3.73
3170 4120 3.988379 TTGCAGAAAGCTTACCTTGTG 57.012 42.857 0.00 0.00 45.94 3.33
3171 4121 3.319122 CCTTTGCAGAAAGCTTACCTTGT 59.681 43.478 0.00 0.00 45.94 3.16
3197 4147 6.519679 AGCATGCAAAGTAAAATCATGAGA 57.480 33.333 21.98 0.00 37.34 3.27
3215 4165 5.630680 GCCAATATTATTGACGGAAAGCATG 59.369 40.000 16.34 0.00 0.00 4.06
3266 4236 5.178252 CAGGACAAACGGCAGATTCATATAG 59.822 44.000 0.00 0.00 0.00 1.31
3268 4238 3.879295 CAGGACAAACGGCAGATTCATAT 59.121 43.478 0.00 0.00 0.00 1.78
3281 4251 5.299279 TGAGAATTTCAGGTTCAGGACAAAC 59.701 40.000 0.00 0.00 0.00 2.93
3295 4265 4.077108 ACAATGCAGCTCTGAGAATTTCA 58.923 39.130 9.28 0.00 0.00 2.69
3296 4266 4.155462 TGACAATGCAGCTCTGAGAATTTC 59.845 41.667 9.28 0.00 0.00 2.17
3317 4287 3.243805 CCAACATGCAAATCACCAAGTGA 60.244 43.478 0.00 0.00 46.90 3.41
3320 4290 3.061322 CACCAACATGCAAATCACCAAG 58.939 45.455 0.00 0.00 0.00 3.61
3322 4292 1.343789 CCACCAACATGCAAATCACCA 59.656 47.619 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.