Multiple sequence alignment - TraesCS3D01G542400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G542400 chr3D 100.000 3315 0 0 1 3315 613482622 613479308 0.000000e+00 6122.0
1 TraesCS3D01G542400 chr3D 98.039 102 1 1 2426 2526 602110758 602110859 3.400000e-40 176.0
2 TraesCS3D01G542400 chr3D 97.059 102 2 1 2426 2526 253552235 253552336 1.580000e-38 171.0
3 TraesCS3D01G542400 chr3B 87.079 1602 134 35 874 2421 804847057 804845475 0.000000e+00 1744.0
4 TraesCS3D01G542400 chr3B 91.845 1214 63 12 1237 2421 827617587 827616381 0.000000e+00 1661.0
5 TraesCS3D01G542400 chr3B 91.763 1214 64 12 1237 2421 827071449 827070243 0.000000e+00 1655.0
6 TraesCS3D01G542400 chr3B 90.748 1070 83 12 1359 2421 809166075 809165015 0.000000e+00 1413.0
7 TraesCS3D01G542400 chr3B 92.366 786 57 3 2531 3315 827070240 827069457 0.000000e+00 1116.0
8 TraesCS3D01G542400 chr3B 92.366 786 57 3 2531 3315 827616378 827615595 0.000000e+00 1116.0
9 TraesCS3D01G542400 chr3B 85.503 1014 89 29 812 1785 822763235 822762240 0.000000e+00 1005.0
10 TraesCS3D01G542400 chr3B 93.472 674 40 4 2644 3315 822790549 822789878 0.000000e+00 998.0
11 TraesCS3D01G542400 chr3B 85.092 758 79 20 2532 3284 809165012 809164284 0.000000e+00 743.0
12 TraesCS3D01G542400 chr3B 83.565 718 91 13 2573 3284 822739358 822738662 0.000000e+00 647.0
13 TraesCS3D01G542400 chr3B 86.712 587 61 7 1850 2420 822739942 822739357 1.300000e-178 636.0
14 TraesCS3D01G542400 chr3B 88.512 383 38 5 868 1247 827097667 827097288 3.010000e-125 459.0
15 TraesCS3D01G542400 chr3B 88.512 383 38 5 868 1247 827642912 827642533 3.010000e-125 459.0
16 TraesCS3D01G542400 chr3B 87.172 343 34 6 2532 2870 804845472 804845136 6.710000e-102 381.0
17 TraesCS3D01G542400 chr3B 84.590 305 34 7 2980 3284 804844414 804844123 1.160000e-74 291.0
18 TraesCS3D01G542400 chr3B 79.753 405 28 10 966 1352 809166608 809166240 9.190000e-61 244.0
19 TraesCS3D01G542400 chr3B 90.476 105 7 2 383 487 827098229 827098128 5.770000e-28 135.0
20 TraesCS3D01G542400 chr3B 90.476 105 7 2 383 487 827643476 827643375 5.770000e-28 135.0
21 TraesCS3D01G542400 chrUn 91.155 1221 71 10 1237 2426 318245901 318244687 0.000000e+00 1622.0
22 TraesCS3D01G542400 chrUn 92.387 486 33 4 2526 3010 318244695 318244213 0.000000e+00 689.0
23 TraesCS3D01G542400 chrUn 88.372 387 36 6 868 1251 268784571 268784191 1.080000e-124 457.0
24 TraesCS3D01G542400 chrUn 90.991 111 7 2 383 493 268785064 268784957 2.660000e-31 147.0
25 TraesCS3D01G542400 chr3A 95.767 874 34 3 1553 2426 749176572 749175702 0.000000e+00 1406.0
26 TraesCS3D01G542400 chr3A 92.896 549 37 2 2526 3073 749175710 749175163 0.000000e+00 797.0
27 TraesCS3D01G542400 chr3A 83.333 258 22 11 448 701 749178223 749177983 5.570000e-53 219.0
28 TraesCS3D01G542400 chr3A 86.992 123 14 2 2526 2647 750277085 750277206 1.600000e-28 137.0
29 TraesCS3D01G542400 chr5B 93.040 273 19 0 3012 3284 437717667 437717395 1.850000e-107 399.0
30 TraesCS3D01G542400 chr5B 95.370 108 2 3 2426 2532 243862687 243862582 5.690000e-38 169.0
31 TraesCS3D01G542400 chr5B 100.000 40 0 0 744 783 699403176 699403137 1.280000e-09 75.0
32 TraesCS3D01G542400 chr5D 96.226 106 2 2 2426 2529 195562331 195562436 4.400000e-39 172.0
33 TraesCS3D01G542400 chr5D 78.680 197 34 7 1819 2013 559931871 559932061 1.250000e-24 124.0
34 TraesCS3D01G542400 chr7D 97.059 102 2 1 2426 2526 578021847 578021948 1.580000e-38 171.0
35 TraesCS3D01G542400 chr7D 100.000 44 0 0 739 782 413543543 413543500 7.620000e-12 82.4
36 TraesCS3D01G542400 chr1D 97.030 101 3 0 2426 2526 490401589 490401689 1.580000e-38 171.0
37 TraesCS3D01G542400 chr1D 82.955 88 11 4 699 783 46474747 46474833 3.550000e-10 76.8
38 TraesCS3D01G542400 chr1D 94.286 35 2 0 673 707 40221734 40221700 2.000000e-03 54.7
39 TraesCS3D01G542400 chr6A 94.495 109 4 2 2426 2533 220699952 220699845 2.050000e-37 167.0
40 TraesCS3D01G542400 chr7B 93.694 111 5 2 2428 2537 677864725 677864616 7.360000e-37 165.0
41 TraesCS3D01G542400 chr7B 94.231 52 1 2 733 783 539202460 539202410 9.860000e-11 78.7
42 TraesCS3D01G542400 chr2D 95.238 105 4 1 2426 2530 54886674 54886777 7.360000e-37 165.0
43 TraesCS3D01G542400 chr5A 94.915 59 3 0 644 702 702239426 702239484 3.520000e-15 93.5
44 TraesCS3D01G542400 chr5A 94.231 52 1 2 732 783 75341058 75341107 9.860000e-11 78.7
45 TraesCS3D01G542400 chr5A 95.918 49 0 2 735 783 688247096 688247142 9.860000e-11 78.7
46 TraesCS3D01G542400 chr1B 92.308 65 5 0 644 708 453173152 453173088 3.520000e-15 93.5
47 TraesCS3D01G542400 chr1B 94.444 54 1 2 732 783 593491551 593491604 7.620000e-12 82.4
48 TraesCS3D01G542400 chr4D 95.918 49 0 2 735 783 373876743 373876789 9.860000e-11 78.7
49 TraesCS3D01G542400 chr4B 88.060 67 7 1 717 783 657300594 657300659 9.860000e-11 78.7
50 TraesCS3D01G542400 chr1A 88.136 59 7 0 650 708 437239486 437239428 1.650000e-08 71.3
51 TraesCS3D01G542400 chr2B 96.875 32 1 0 646 677 706924017 706924048 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G542400 chr3D 613479308 613482622 3314 True 6122.000000 6122 100.000000 1 3315 1 chr3D.!!$R1 3314
1 TraesCS3D01G542400 chr3B 827615595 827617587 1992 True 1388.500000 1661 92.105500 1237 3315 2 chr3B.!!$R8 2078
2 TraesCS3D01G542400 chr3B 827069457 827071449 1992 True 1385.500000 1655 92.064500 1237 3315 2 chr3B.!!$R6 2078
3 TraesCS3D01G542400 chr3B 822762240 822763235 995 True 1005.000000 1005 85.503000 812 1785 1 chr3B.!!$R1 973
4 TraesCS3D01G542400 chr3B 822789878 822790549 671 True 998.000000 998 93.472000 2644 3315 1 chr3B.!!$R2 671
5 TraesCS3D01G542400 chr3B 804844123 804847057 2934 True 805.333333 1744 86.280333 874 3284 3 chr3B.!!$R3 2410
6 TraesCS3D01G542400 chr3B 809164284 809166608 2324 True 800.000000 1413 85.197667 966 3284 3 chr3B.!!$R4 2318
7 TraesCS3D01G542400 chr3B 822738662 822739942 1280 True 641.500000 647 85.138500 1850 3284 2 chr3B.!!$R5 1434
8 TraesCS3D01G542400 chr3B 827097288 827098229 941 True 297.000000 459 89.494000 383 1247 2 chr3B.!!$R7 864
9 TraesCS3D01G542400 chr3B 827642533 827643476 943 True 297.000000 459 89.494000 383 1247 2 chr3B.!!$R9 864
10 TraesCS3D01G542400 chrUn 318244213 318245901 1688 True 1155.500000 1622 91.771000 1237 3010 2 chrUn.!!$R2 1773
11 TraesCS3D01G542400 chrUn 268784191 268785064 873 True 302.000000 457 89.681500 383 1251 2 chrUn.!!$R1 868
12 TraesCS3D01G542400 chr3A 749175163 749178223 3060 True 807.333333 1406 90.665333 448 3073 3 chr3A.!!$R1 2625

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
256 257 0.038892 TCCAGTCACGGTAGCGTTTC 60.039 55.0 18.77 13.3 0.0 2.78 F
746 1005 0.107831 TTGGGGTTCAGAGTTCACCG 59.892 55.0 0.00 0.0 0.0 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1188 2583 1.275291 AGTATGACCAACCACGTGAGG 59.725 52.381 19.30 17.70 0.00 3.86 R
2472 4104 0.110373 CATCATGACGATGCATGCGG 60.110 55.000 14.09 7.44 44.95 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.785982 TAGCACACCGGAAGCAGA 58.214 55.556 9.46 0.00 0.00 4.26
18 19 1.591703 TAGCACACCGGAAGCAGAG 59.408 57.895 9.46 0.00 0.00 3.35
19 20 1.888436 TAGCACACCGGAAGCAGAGG 61.888 60.000 9.46 0.00 0.00 3.69
20 21 3.059982 CACACCGGAAGCAGAGGA 58.940 61.111 9.46 0.00 0.00 3.71
21 22 1.374758 CACACCGGAAGCAGAGGAC 60.375 63.158 9.46 0.00 0.00 3.85
22 23 2.125912 CACCGGAAGCAGAGGACG 60.126 66.667 9.46 0.00 0.00 4.79
24 25 4.148825 CCGGAAGCAGAGGACGGG 62.149 72.222 0.00 0.00 40.79 5.28
25 26 4.821589 CGGAAGCAGAGGACGGGC 62.822 72.222 0.00 0.00 0.00 6.13
26 27 3.706373 GGAAGCAGAGGACGGGCA 61.706 66.667 0.00 0.00 0.00 5.36
27 28 2.125350 GAAGCAGAGGACGGGCAG 60.125 66.667 0.00 0.00 0.00 4.85
28 29 3.672295 GAAGCAGAGGACGGGCAGG 62.672 68.421 0.00 0.00 0.00 4.85
47 48 2.818274 GGTGGCCCGATTCACGAC 60.818 66.667 0.00 0.00 45.77 4.34
48 49 3.186047 GTGGCCCGATTCACGACG 61.186 66.667 0.00 0.00 45.77 5.12
49 50 3.375239 TGGCCCGATTCACGACGA 61.375 61.111 0.00 0.00 45.77 4.20
50 51 2.582498 GGCCCGATTCACGACGAG 60.582 66.667 0.00 0.00 45.77 4.18
51 52 2.488355 GCCCGATTCACGACGAGA 59.512 61.111 0.00 0.00 45.77 4.04
52 53 1.065928 GCCCGATTCACGACGAGAT 59.934 57.895 0.00 0.00 45.77 2.75
53 54 1.209275 GCCCGATTCACGACGAGATG 61.209 60.000 0.00 0.00 45.77 2.90
54 55 0.380733 CCCGATTCACGACGAGATGA 59.619 55.000 0.00 0.00 45.77 2.92
55 56 1.598183 CCCGATTCACGACGAGATGAG 60.598 57.143 0.00 0.00 45.77 2.90
56 57 1.598183 CCGATTCACGACGAGATGAGG 60.598 57.143 0.00 0.00 45.77 3.86
57 58 1.064208 CGATTCACGACGAGATGAGGT 59.936 52.381 0.00 0.00 45.77 3.85
58 59 2.287103 CGATTCACGACGAGATGAGGTA 59.713 50.000 0.00 0.00 45.77 3.08
59 60 3.058846 CGATTCACGACGAGATGAGGTAT 60.059 47.826 0.00 0.00 45.77 2.73
60 61 3.965292 TTCACGACGAGATGAGGTATC 57.035 47.619 0.00 0.00 35.97 2.24
61 62 2.914059 TCACGACGAGATGAGGTATCA 58.086 47.619 0.00 0.00 38.31 2.15
62 63 3.275999 TCACGACGAGATGAGGTATCAA 58.724 45.455 0.00 0.00 39.39 2.57
63 64 3.692593 TCACGACGAGATGAGGTATCAAA 59.307 43.478 0.00 0.00 39.39 2.69
64 65 3.791887 CACGACGAGATGAGGTATCAAAC 59.208 47.826 0.00 0.00 39.39 2.93
81 82 5.720371 TCAAACCACATGTAAAATCCTGG 57.280 39.130 0.00 0.00 0.00 4.45
82 83 5.144100 TCAAACCACATGTAAAATCCTGGT 58.856 37.500 0.00 0.00 33.29 4.00
83 84 5.010516 TCAAACCACATGTAAAATCCTGGTG 59.989 40.000 0.00 0.00 32.24 4.17
84 85 4.380843 ACCACATGTAAAATCCTGGTGA 57.619 40.909 0.00 0.00 30.65 4.02
85 86 4.934356 ACCACATGTAAAATCCTGGTGAT 58.066 39.130 0.00 0.00 30.65 3.06
86 87 4.706476 ACCACATGTAAAATCCTGGTGATG 59.294 41.667 0.00 0.00 32.68 3.07
87 88 4.440525 CCACATGTAAAATCCTGGTGATGC 60.441 45.833 0.00 0.00 32.68 3.91
88 89 3.378112 ACATGTAAAATCCTGGTGATGCG 59.622 43.478 0.00 0.00 32.68 4.73
89 90 2.364632 TGTAAAATCCTGGTGATGCGG 58.635 47.619 0.00 0.00 32.68 5.69
90 91 1.676006 GTAAAATCCTGGTGATGCGGG 59.324 52.381 0.00 0.00 32.68 6.13
91 92 0.039618 AAAATCCTGGTGATGCGGGT 59.960 50.000 0.00 0.00 32.68 5.28
92 93 0.394352 AAATCCTGGTGATGCGGGTC 60.394 55.000 0.00 0.00 32.68 4.46
93 94 2.593468 AATCCTGGTGATGCGGGTCG 62.593 60.000 0.00 0.00 32.68 4.79
104 105 4.200283 CGGGTCGCCTCAGAGCTC 62.200 72.222 5.27 5.27 38.56 4.09
105 106 3.844090 GGGTCGCCTCAGAGCTCC 61.844 72.222 10.93 0.00 38.56 4.70
106 107 3.844090 GGTCGCCTCAGAGCTCCC 61.844 72.222 10.93 0.00 35.89 4.30
107 108 3.071206 GTCGCCTCAGAGCTCCCA 61.071 66.667 10.93 0.00 0.00 4.37
108 109 2.042537 TCGCCTCAGAGCTCCCAT 60.043 61.111 10.93 0.00 0.00 4.00
109 110 2.130426 TCGCCTCAGAGCTCCCATC 61.130 63.158 10.93 0.00 0.00 3.51
110 111 2.429767 CGCCTCAGAGCTCCCATCA 61.430 63.158 10.93 0.00 0.00 3.07
111 112 1.145819 GCCTCAGAGCTCCCATCAC 59.854 63.158 10.93 0.00 0.00 3.06
112 113 1.620739 GCCTCAGAGCTCCCATCACA 61.621 60.000 10.93 0.00 0.00 3.58
113 114 0.907486 CCTCAGAGCTCCCATCACAA 59.093 55.000 10.93 0.00 0.00 3.33
114 115 1.134461 CCTCAGAGCTCCCATCACAAG 60.134 57.143 10.93 0.00 0.00 3.16
115 116 1.554160 CTCAGAGCTCCCATCACAAGT 59.446 52.381 10.93 0.00 0.00 3.16
116 117 1.277273 TCAGAGCTCCCATCACAAGTG 59.723 52.381 10.93 0.00 0.00 3.16
117 118 0.617413 AGAGCTCCCATCACAAGTGG 59.383 55.000 10.93 0.00 36.47 4.00
118 119 1.001641 AGCTCCCATCACAAGTGGC 60.002 57.895 0.00 0.00 35.35 5.01
119 120 2.048603 GCTCCCATCACAAGTGGCC 61.049 63.158 0.00 0.00 35.35 5.36
120 121 1.379916 CTCCCATCACAAGTGGCCA 59.620 57.895 0.00 0.00 35.35 5.36
121 122 0.962356 CTCCCATCACAAGTGGCCAC 60.962 60.000 29.22 29.22 35.35 5.01
122 123 1.228521 CCCATCACAAGTGGCCACA 60.229 57.895 36.39 17.14 35.35 4.17
123 124 0.612732 CCCATCACAAGTGGCCACAT 60.613 55.000 36.39 24.14 35.35 3.21
124 125 1.340893 CCCATCACAAGTGGCCACATA 60.341 52.381 36.39 17.15 35.35 2.29
125 126 1.745087 CCATCACAAGTGGCCACATAC 59.255 52.381 36.39 11.15 0.00 2.39
126 127 1.398041 CATCACAAGTGGCCACATACG 59.602 52.381 36.39 22.64 0.00 3.06
127 128 0.394938 TCACAAGTGGCCACATACGT 59.605 50.000 36.39 23.27 0.00 3.57
128 129 0.796312 CACAAGTGGCCACATACGTC 59.204 55.000 36.39 9.07 0.00 4.34
129 130 0.394938 ACAAGTGGCCACATACGTCA 59.605 50.000 36.39 0.00 0.00 4.35
130 131 1.202710 ACAAGTGGCCACATACGTCAA 60.203 47.619 36.39 0.00 0.00 3.18
131 132 1.876799 CAAGTGGCCACATACGTCAAA 59.123 47.619 36.39 0.00 0.00 2.69
132 133 2.264005 AGTGGCCACATACGTCAAAA 57.736 45.000 36.39 0.00 0.00 2.44
133 134 1.877443 AGTGGCCACATACGTCAAAAC 59.123 47.619 36.39 5.80 0.00 2.43
134 135 1.604755 GTGGCCACATACGTCAAAACA 59.395 47.619 31.23 0.00 0.00 2.83
135 136 1.604755 TGGCCACATACGTCAAAACAC 59.395 47.619 0.00 0.00 0.00 3.32
136 137 1.604755 GGCCACATACGTCAAAACACA 59.395 47.619 0.00 0.00 0.00 3.72
137 138 2.603652 GGCCACATACGTCAAAACACAC 60.604 50.000 0.00 0.00 0.00 3.82
138 139 2.032302 GCCACATACGTCAAAACACACA 59.968 45.455 0.00 0.00 0.00 3.72
139 140 3.613563 CCACATACGTCAAAACACACAC 58.386 45.455 0.00 0.00 0.00 3.82
140 141 3.064134 CCACATACGTCAAAACACACACA 59.936 43.478 0.00 0.00 0.00 3.72
141 142 4.025750 CACATACGTCAAAACACACACAC 58.974 43.478 0.00 0.00 0.00 3.82
142 143 3.685272 ACATACGTCAAAACACACACACA 59.315 39.130 0.00 0.00 0.00 3.72
143 144 2.604969 ACGTCAAAACACACACACAC 57.395 45.000 0.00 0.00 0.00 3.82
144 145 1.874231 ACGTCAAAACACACACACACA 59.126 42.857 0.00 0.00 0.00 3.72
145 146 2.238363 CGTCAAAACACACACACACAC 58.762 47.619 0.00 0.00 0.00 3.82
146 147 2.349912 CGTCAAAACACACACACACACA 60.350 45.455 0.00 0.00 0.00 3.72
147 148 2.977169 GTCAAAACACACACACACACAC 59.023 45.455 0.00 0.00 0.00 3.82
148 149 2.618709 TCAAAACACACACACACACACA 59.381 40.909 0.00 0.00 0.00 3.72
149 150 3.066760 TCAAAACACACACACACACACAA 59.933 39.130 0.00 0.00 0.00 3.33
150 151 3.717400 AAACACACACACACACACAAA 57.283 38.095 0.00 0.00 0.00 2.83
151 152 3.717400 AACACACACACACACACAAAA 57.283 38.095 0.00 0.00 0.00 2.44
152 153 3.717400 ACACACACACACACACAAAAA 57.283 38.095 0.00 0.00 0.00 1.94
183 184 4.894201 GGATGCAGTCCATGGGAG 57.106 61.111 13.02 3.15 46.96 4.30
184 185 2.224821 GGATGCAGTCCATGGGAGA 58.775 57.895 13.02 0.00 46.96 3.71
185 186 0.179034 GGATGCAGTCCATGGGAGAC 60.179 60.000 13.02 2.47 46.96 3.36
186 187 0.835941 GATGCAGTCCATGGGAGACT 59.164 55.000 13.02 5.20 45.45 3.24
192 193 2.472029 AGTCCATGGGAGACTGTTAGG 58.528 52.381 13.02 0.00 42.94 2.69
193 194 1.134371 GTCCATGGGAGACTGTTAGGC 60.134 57.143 13.02 0.00 29.39 3.93
194 195 0.181350 CCATGGGAGACTGTTAGGCC 59.819 60.000 2.85 0.00 0.00 5.19
195 196 1.207791 CATGGGAGACTGTTAGGCCT 58.792 55.000 11.78 11.78 0.00 5.19
196 197 1.561542 CATGGGAGACTGTTAGGCCTT 59.438 52.381 12.58 0.00 0.00 4.35
197 198 1.276622 TGGGAGACTGTTAGGCCTTC 58.723 55.000 12.58 0.62 0.00 3.46
198 199 0.542333 GGGAGACTGTTAGGCCTTCC 59.458 60.000 12.58 10.14 0.00 3.46
199 200 0.542333 GGAGACTGTTAGGCCTTCCC 59.458 60.000 12.58 1.71 0.00 3.97
200 201 1.276622 GAGACTGTTAGGCCTTCCCA 58.723 55.000 12.58 4.34 35.39 4.37
201 202 1.628846 GAGACTGTTAGGCCTTCCCAA 59.371 52.381 12.58 0.00 35.39 4.12
202 203 1.630878 AGACTGTTAGGCCTTCCCAAG 59.369 52.381 12.58 4.74 35.39 3.61
217 218 7.954666 CCTTCCCAAGGTCATAATAAAGAAA 57.045 36.000 0.00 0.00 43.95 2.52
218 219 7.772166 CCTTCCCAAGGTCATAATAAAGAAAC 58.228 38.462 0.00 0.00 43.95 2.78
219 220 7.396055 CCTTCCCAAGGTCATAATAAAGAAACA 59.604 37.037 0.00 0.00 43.95 2.83
220 221 8.713708 TTCCCAAGGTCATAATAAAGAAACAA 57.286 30.769 0.00 0.00 0.00 2.83
221 222 8.348285 TCCCAAGGTCATAATAAAGAAACAAG 57.652 34.615 0.00 0.00 0.00 3.16
222 223 7.396055 TCCCAAGGTCATAATAAAGAAACAAGG 59.604 37.037 0.00 0.00 0.00 3.61
223 224 7.396055 CCCAAGGTCATAATAAAGAAACAAGGA 59.604 37.037 0.00 0.00 0.00 3.36
224 225 8.802267 CCAAGGTCATAATAAAGAAACAAGGAA 58.198 33.333 0.00 0.00 0.00 3.36
233 234 8.533569 AATAAAGAAACAAGGAAAACTCTCCA 57.466 30.769 0.00 0.00 38.02 3.86
234 235 6.850752 AAAGAAACAAGGAAAACTCTCCAA 57.149 33.333 0.00 0.00 38.02 3.53
235 236 6.456795 AAGAAACAAGGAAAACTCTCCAAG 57.543 37.500 0.00 0.00 38.02 3.61
236 237 5.755849 AGAAACAAGGAAAACTCTCCAAGA 58.244 37.500 0.00 0.00 38.02 3.02
237 238 6.368805 AGAAACAAGGAAAACTCTCCAAGAT 58.631 36.000 0.00 0.00 38.02 2.40
238 239 6.488344 AGAAACAAGGAAAACTCTCCAAGATC 59.512 38.462 0.00 0.00 38.02 2.75
239 240 4.657013 ACAAGGAAAACTCTCCAAGATCC 58.343 43.478 0.00 0.00 38.02 3.36
240 241 4.104738 ACAAGGAAAACTCTCCAAGATCCA 59.895 41.667 0.00 0.00 38.02 3.41
241 242 4.566426 AGGAAAACTCTCCAAGATCCAG 57.434 45.455 0.00 0.00 38.02 3.86
242 243 3.913163 AGGAAAACTCTCCAAGATCCAGT 59.087 43.478 0.00 0.00 38.02 4.00
243 244 4.019771 AGGAAAACTCTCCAAGATCCAGTC 60.020 45.833 0.00 0.00 38.02 3.51
244 245 4.263068 GGAAAACTCTCCAAGATCCAGTCA 60.263 45.833 0.00 0.00 35.36 3.41
245 246 3.971245 AACTCTCCAAGATCCAGTCAC 57.029 47.619 0.00 0.00 0.00 3.67
246 247 1.821753 ACTCTCCAAGATCCAGTCACG 59.178 52.381 0.00 0.00 0.00 4.35
247 248 1.135915 CTCTCCAAGATCCAGTCACGG 59.864 57.143 0.00 0.00 0.00 4.94
248 249 0.898320 CTCCAAGATCCAGTCACGGT 59.102 55.000 0.00 0.00 0.00 4.83
249 250 2.100197 CTCCAAGATCCAGTCACGGTA 58.900 52.381 0.00 0.00 0.00 4.02
250 251 2.099921 CTCCAAGATCCAGTCACGGTAG 59.900 54.545 0.00 0.00 0.00 3.18
251 252 1.471676 CCAAGATCCAGTCACGGTAGC 60.472 57.143 0.00 0.00 0.00 3.58
252 253 0.456221 AAGATCCAGTCACGGTAGCG 59.544 55.000 13.69 13.69 0.00 4.26
253 254 0.680280 AGATCCAGTCACGGTAGCGT 60.680 55.000 15.34 15.34 0.00 5.07
254 255 0.172803 GATCCAGTCACGGTAGCGTT 59.827 55.000 18.77 0.45 0.00 4.84
255 256 0.606604 ATCCAGTCACGGTAGCGTTT 59.393 50.000 18.77 3.56 0.00 3.60
256 257 0.038892 TCCAGTCACGGTAGCGTTTC 60.039 55.000 18.77 13.30 0.00 2.78
257 258 0.319211 CCAGTCACGGTAGCGTTTCA 60.319 55.000 18.77 1.52 0.00 2.69
258 259 1.671850 CCAGTCACGGTAGCGTTTCAT 60.672 52.381 18.77 1.15 0.00 2.57
259 260 2.066262 CAGTCACGGTAGCGTTTCATT 58.934 47.619 18.77 0.00 0.00 2.57
260 261 2.066262 AGTCACGGTAGCGTTTCATTG 58.934 47.619 18.77 5.59 0.00 2.82
261 262 0.793861 TCACGGTAGCGTTTCATTGC 59.206 50.000 18.77 0.00 0.00 3.56
262 263 0.796312 CACGGTAGCGTTTCATTGCT 59.204 50.000 18.77 0.00 45.04 3.91
263 264 1.076332 ACGGTAGCGTTTCATTGCTC 58.924 50.000 15.34 0.00 42.48 4.26
264 265 1.075542 CGGTAGCGTTTCATTGCTCA 58.924 50.000 6.07 0.00 42.48 4.26
265 266 1.665679 CGGTAGCGTTTCATTGCTCAT 59.334 47.619 6.07 0.00 42.48 2.90
266 267 2.095853 CGGTAGCGTTTCATTGCTCATT 59.904 45.455 6.07 0.00 42.48 2.57
267 268 3.426159 CGGTAGCGTTTCATTGCTCATTT 60.426 43.478 6.07 0.00 42.48 2.32
268 269 4.098416 GGTAGCGTTTCATTGCTCATTTC 58.902 43.478 0.00 0.00 42.48 2.17
269 270 3.921119 AGCGTTTCATTGCTCATTTCA 57.079 38.095 0.00 0.00 36.53 2.69
270 271 3.829948 AGCGTTTCATTGCTCATTTCAG 58.170 40.909 0.00 0.00 36.53 3.02
271 272 2.919229 GCGTTTCATTGCTCATTTCAGG 59.081 45.455 0.00 0.00 0.00 3.86
272 273 3.504863 CGTTTCATTGCTCATTTCAGGG 58.495 45.455 0.00 0.00 0.00 4.45
273 274 3.057315 CGTTTCATTGCTCATTTCAGGGT 60.057 43.478 0.00 0.00 0.00 4.34
274 275 4.155826 CGTTTCATTGCTCATTTCAGGGTA 59.844 41.667 0.00 0.00 0.00 3.69
275 276 5.644644 GTTTCATTGCTCATTTCAGGGTAG 58.355 41.667 0.00 0.00 0.00 3.18
276 277 3.889815 TCATTGCTCATTTCAGGGTAGG 58.110 45.455 0.00 0.00 0.00 3.18
277 278 3.266772 TCATTGCTCATTTCAGGGTAGGT 59.733 43.478 0.00 0.00 0.00 3.08
278 279 4.473196 TCATTGCTCATTTCAGGGTAGGTA 59.527 41.667 0.00 0.00 0.00 3.08
279 280 3.906720 TGCTCATTTCAGGGTAGGTAC 57.093 47.619 0.00 0.00 0.00 3.34
280 281 3.178046 TGCTCATTTCAGGGTAGGTACA 58.822 45.455 0.00 0.00 0.00 2.90
281 282 3.197766 TGCTCATTTCAGGGTAGGTACAG 59.802 47.826 0.00 0.00 0.00 2.74
282 283 3.197983 GCTCATTTCAGGGTAGGTACAGT 59.802 47.826 0.00 0.00 0.00 3.55
283 284 4.680975 GCTCATTTCAGGGTAGGTACAGTC 60.681 50.000 0.00 0.00 0.00 3.51
284 285 3.773119 TCATTTCAGGGTAGGTACAGTCC 59.227 47.826 0.00 0.00 0.00 3.85
285 286 3.263369 TTTCAGGGTAGGTACAGTCCA 57.737 47.619 0.00 0.00 0.00 4.02
286 287 2.526888 TCAGGGTAGGTACAGTCCAG 57.473 55.000 0.00 0.00 0.00 3.86
287 288 1.714787 TCAGGGTAGGTACAGTCCAGT 59.285 52.381 0.00 0.00 0.00 4.00
288 289 2.100989 CAGGGTAGGTACAGTCCAGTC 58.899 57.143 0.00 0.00 0.00 3.51
289 290 1.006878 AGGGTAGGTACAGTCCAGTCC 59.993 57.143 0.00 0.00 0.00 3.85
290 291 1.272872 GGGTAGGTACAGTCCAGTCCA 60.273 57.143 0.00 0.00 0.00 4.02
291 292 1.823610 GGTAGGTACAGTCCAGTCCAC 59.176 57.143 0.00 0.00 0.00 4.02
292 293 2.522185 GTAGGTACAGTCCAGTCCACA 58.478 52.381 0.00 0.00 0.00 4.17
293 294 2.327325 AGGTACAGTCCAGTCCACAT 57.673 50.000 0.00 0.00 0.00 3.21
294 295 2.180276 AGGTACAGTCCAGTCCACATC 58.820 52.381 0.00 0.00 0.00 3.06
295 296 2.180276 GGTACAGTCCAGTCCACATCT 58.820 52.381 0.00 0.00 0.00 2.90
296 297 2.567615 GGTACAGTCCAGTCCACATCTT 59.432 50.000 0.00 0.00 0.00 2.40
297 298 3.368531 GGTACAGTCCAGTCCACATCTTC 60.369 52.174 0.00 0.00 0.00 2.87
298 299 2.614259 ACAGTCCAGTCCACATCTTCT 58.386 47.619 0.00 0.00 0.00 2.85
299 300 2.975489 ACAGTCCAGTCCACATCTTCTT 59.025 45.455 0.00 0.00 0.00 2.52
300 301 3.007398 ACAGTCCAGTCCACATCTTCTTC 59.993 47.826 0.00 0.00 0.00 2.87
301 302 3.007290 CAGTCCAGTCCACATCTTCTTCA 59.993 47.826 0.00 0.00 0.00 3.02
302 303 3.260380 AGTCCAGTCCACATCTTCTTCAG 59.740 47.826 0.00 0.00 0.00 3.02
303 304 2.027745 TCCAGTCCACATCTTCTTCAGC 60.028 50.000 0.00 0.00 0.00 4.26
304 305 2.354259 CAGTCCACATCTTCTTCAGCC 58.646 52.381 0.00 0.00 0.00 4.85
305 306 2.027377 CAGTCCACATCTTCTTCAGCCT 60.027 50.000 0.00 0.00 0.00 4.58
306 307 2.027377 AGTCCACATCTTCTTCAGCCTG 60.027 50.000 0.00 0.00 0.00 4.85
307 308 1.093159 CCACATCTTCTTCAGCCTGC 58.907 55.000 0.00 0.00 0.00 4.85
308 309 1.612462 CCACATCTTCTTCAGCCTGCA 60.612 52.381 0.00 0.00 0.00 4.41
309 310 1.738350 CACATCTTCTTCAGCCTGCAG 59.262 52.381 6.78 6.78 0.00 4.41
310 311 0.733729 CATCTTCTTCAGCCTGCAGC 59.266 55.000 8.66 3.91 44.25 5.25
311 312 0.394080 ATCTTCTTCAGCCTGCAGCC 60.394 55.000 8.66 0.00 45.47 4.85
312 313 2.034687 TTCTTCAGCCTGCAGCCC 59.965 61.111 8.66 0.77 45.47 5.19
313 314 3.574074 TTCTTCAGCCTGCAGCCCC 62.574 63.158 8.66 0.00 45.47 5.80
324 325 4.767255 CAGCCCCGTCCACTGCTC 62.767 72.222 0.00 0.00 30.08 4.26
327 328 4.087892 CCCCGTCCACTGCTCCAG 62.088 72.222 0.00 0.00 37.52 3.86
328 329 4.087892 CCCGTCCACTGCTCCAGG 62.088 72.222 0.00 0.00 35.51 4.45
329 330 3.314331 CCGTCCACTGCTCCAGGT 61.314 66.667 0.00 0.00 35.51 4.00
330 331 1.982395 CCGTCCACTGCTCCAGGTA 60.982 63.158 0.00 0.00 35.51 3.08
331 332 1.330655 CCGTCCACTGCTCCAGGTAT 61.331 60.000 0.00 0.00 35.51 2.73
332 333 0.179100 CGTCCACTGCTCCAGGTATG 60.179 60.000 0.00 0.00 35.51 2.39
333 334 0.905357 GTCCACTGCTCCAGGTATGT 59.095 55.000 0.00 0.00 35.51 2.29
334 335 2.108168 GTCCACTGCTCCAGGTATGTA 58.892 52.381 0.00 0.00 35.51 2.29
335 336 2.108168 TCCACTGCTCCAGGTATGTAC 58.892 52.381 0.00 0.00 35.51 2.90
336 337 1.831106 CCACTGCTCCAGGTATGTACA 59.169 52.381 0.00 0.00 35.51 2.90
337 338 2.418746 CCACTGCTCCAGGTATGTACAC 60.419 54.545 0.00 0.00 35.51 2.90
338 339 2.233676 CACTGCTCCAGGTATGTACACA 59.766 50.000 0.00 0.00 35.51 3.72
339 340 3.107601 ACTGCTCCAGGTATGTACACAT 58.892 45.455 0.00 0.00 36.76 3.21
340 341 3.133003 ACTGCTCCAGGTATGTACACATC 59.867 47.826 0.00 0.00 35.42 3.06
341 342 3.374764 TGCTCCAGGTATGTACACATCT 58.625 45.455 0.00 0.00 37.76 2.90
342 343 3.774766 TGCTCCAGGTATGTACACATCTT 59.225 43.478 0.00 0.00 37.76 2.40
343 344 4.141937 TGCTCCAGGTATGTACACATCTTC 60.142 45.833 0.00 0.00 37.76 2.87
344 345 4.100189 GCTCCAGGTATGTACACATCTTCT 59.900 45.833 0.00 0.00 37.76 2.85
345 346 5.737635 GCTCCAGGTATGTACACATCTTCTC 60.738 48.000 0.00 0.00 37.76 2.87
346 347 4.649674 TCCAGGTATGTACACATCTTCTCC 59.350 45.833 0.00 0.00 37.76 3.71
347 348 4.405680 CCAGGTATGTACACATCTTCTCCA 59.594 45.833 0.00 0.00 37.76 3.86
348 349 5.104941 CCAGGTATGTACACATCTTCTCCAA 60.105 44.000 0.00 0.00 37.76 3.53
349 350 6.045318 CAGGTATGTACACATCTTCTCCAAG 58.955 44.000 0.00 0.00 37.76 3.61
350 351 5.958380 AGGTATGTACACATCTTCTCCAAGA 59.042 40.000 0.00 0.00 43.06 3.02
352 353 6.926272 GGTATGTACACATCTTCTCCAAGATC 59.074 42.308 0.00 0.00 44.86 2.75
353 354 5.344743 TGTACACATCTTCTCCAAGATCC 57.655 43.478 0.00 0.00 44.86 3.36
354 355 3.533606 ACACATCTTCTCCAAGATCCG 57.466 47.619 0.00 0.00 44.86 4.18
355 356 2.208431 CACATCTTCTCCAAGATCCGC 58.792 52.381 0.00 0.00 44.86 5.54
356 357 2.114616 ACATCTTCTCCAAGATCCGCT 58.885 47.619 0.00 0.00 44.86 5.52
357 358 2.158986 ACATCTTCTCCAAGATCCGCTG 60.159 50.000 0.00 0.00 44.86 5.18
358 359 1.852633 TCTTCTCCAAGATCCGCTGA 58.147 50.000 0.00 0.00 33.38 4.26
359 360 2.179427 TCTTCTCCAAGATCCGCTGAA 58.821 47.619 0.00 0.00 33.38 3.02
360 361 2.768527 TCTTCTCCAAGATCCGCTGAAT 59.231 45.455 0.00 0.00 33.38 2.57
361 362 2.898729 TCTCCAAGATCCGCTGAATC 57.101 50.000 0.00 0.00 0.00 2.52
362 363 2.392662 TCTCCAAGATCCGCTGAATCT 58.607 47.619 0.00 0.00 0.00 2.40
363 364 2.363680 TCTCCAAGATCCGCTGAATCTC 59.636 50.000 0.00 0.00 0.00 2.75
364 365 2.364970 CTCCAAGATCCGCTGAATCTCT 59.635 50.000 0.00 0.00 0.00 3.10
365 366 2.102084 TCCAAGATCCGCTGAATCTCTG 59.898 50.000 0.00 0.00 0.00 3.35
366 367 2.158986 CCAAGATCCGCTGAATCTCTGT 60.159 50.000 0.00 0.00 0.00 3.41
367 368 3.122297 CAAGATCCGCTGAATCTCTGTC 58.878 50.000 0.00 0.00 0.00 3.51
368 369 2.665165 AGATCCGCTGAATCTCTGTCT 58.335 47.619 0.00 0.00 0.00 3.41
369 370 2.622942 AGATCCGCTGAATCTCTGTCTC 59.377 50.000 0.00 0.00 0.00 3.36
370 371 1.839424 TCCGCTGAATCTCTGTCTCA 58.161 50.000 0.00 0.00 0.00 3.27
371 372 1.747924 TCCGCTGAATCTCTGTCTCAG 59.252 52.381 0.00 0.00 39.69 3.35
375 376 2.542597 CTGAATCTCTGTCTCAGCAGC 58.457 52.381 0.00 0.00 36.49 5.25
376 377 1.897802 TGAATCTCTGTCTCAGCAGCA 59.102 47.619 0.00 0.00 36.49 4.41
377 378 2.500504 TGAATCTCTGTCTCAGCAGCAT 59.499 45.455 0.00 0.00 36.49 3.79
378 379 2.605837 ATCTCTGTCTCAGCAGCATG 57.394 50.000 0.00 0.00 36.49 4.06
379 380 1.264295 TCTCTGTCTCAGCAGCATGT 58.736 50.000 0.00 0.00 39.31 3.21
380 381 1.622312 TCTCTGTCTCAGCAGCATGTT 59.378 47.619 0.00 0.00 39.31 2.71
396 397 4.529446 GCATGTTGCTTTGGTTTGATTTG 58.471 39.130 0.00 0.00 40.96 2.32
404 405 4.516321 GCTTTGGTTTGATTTGATTTGCCT 59.484 37.500 0.00 0.00 0.00 4.75
408 409 6.418057 TGGTTTGATTTGATTTGCCTAACT 57.582 33.333 0.00 0.00 0.00 2.24
409 410 7.531857 TGGTTTGATTTGATTTGCCTAACTA 57.468 32.000 0.00 0.00 0.00 2.24
427 428 9.182933 GCCTAACTATAAGTTGAGATCTAAACG 57.817 37.037 15.97 5.48 39.11 3.60
482 483 1.405105 CAACAACACCACCCAAGTCAG 59.595 52.381 0.00 0.00 0.00 3.51
493 635 1.272092 CCCAAGTCAGCCTGAATGGAA 60.272 52.381 22.90 0.00 37.65 3.53
518 710 2.604174 CGTTCGGGAGTTGGTGTGC 61.604 63.158 0.00 0.00 0.00 4.57
539 737 2.159170 CGAGAGAGACATTGGGGAAGAC 60.159 54.545 0.00 0.00 0.00 3.01
542 740 3.848975 AGAGAGACATTGGGGAAGACATT 59.151 43.478 0.00 0.00 0.00 2.71
544 742 3.331889 AGAGACATTGGGGAAGACATTGT 59.668 43.478 0.00 0.00 35.76 2.71
545 743 4.536090 AGAGACATTGGGGAAGACATTGTA 59.464 41.667 0.00 0.00 33.92 2.41
548 746 5.888161 AGACATTGGGGAAGACATTGTATTC 59.112 40.000 14.35 14.35 33.92 1.75
549 747 4.640201 ACATTGGGGAAGACATTGTATTCG 59.360 41.667 15.77 5.75 34.99 3.34
550 748 3.992943 TGGGGAAGACATTGTATTCGT 57.007 42.857 15.77 0.00 34.99 3.85
554 752 4.684703 GGGGAAGACATTGTATTCGTATCG 59.315 45.833 15.77 0.00 34.99 2.92
555 753 5.287226 GGGAAGACATTGTATTCGTATCGT 58.713 41.667 15.77 0.00 34.99 3.73
558 756 6.142480 GGAAGACATTGTATTCGTATCGTGAG 59.858 42.308 15.77 0.00 34.99 3.51
559 757 6.132791 AGACATTGTATTCGTATCGTGAGT 57.867 37.500 0.00 0.00 0.00 3.41
563 761 5.806366 TTGTATTCGTATCGTGAGTGAGA 57.194 39.130 0.00 0.00 0.00 3.27
564 762 6.373186 TTGTATTCGTATCGTGAGTGAGAT 57.627 37.500 0.00 0.00 0.00 2.75
565 763 6.373186 TGTATTCGTATCGTGAGTGAGATT 57.627 37.500 0.00 0.00 0.00 2.40
567 765 7.573627 TGTATTCGTATCGTGAGTGAGATTAG 58.426 38.462 0.00 0.00 0.00 1.73
568 766 6.621316 ATTCGTATCGTGAGTGAGATTAGT 57.379 37.500 0.00 0.00 0.00 2.24
569 767 5.654317 TCGTATCGTGAGTGAGATTAGTC 57.346 43.478 0.00 0.00 0.00 2.59
570 768 5.114081 TCGTATCGTGAGTGAGATTAGTCA 58.886 41.667 0.00 0.00 0.00 3.41
571 769 5.234543 TCGTATCGTGAGTGAGATTAGTCAG 59.765 44.000 0.00 0.00 31.04 3.51
594 792 0.618393 TACCCCCTTTCCCAGTACGG 60.618 60.000 0.00 0.00 0.00 4.02
596 794 2.298661 CCCCTTTCCCAGTACGGCT 61.299 63.158 0.00 0.00 0.00 5.52
602 800 2.684001 TTCCCAGTACGGCTATGTTG 57.316 50.000 0.00 0.00 0.00 3.33
670 868 4.519906 TTAATCCTCCCCAATCCACTTC 57.480 45.455 0.00 0.00 0.00 3.01
677 875 1.689258 CCCCAATCCACTTCAATCCCC 60.689 57.143 0.00 0.00 0.00 4.81
686 884 1.173913 CTTCAATCCCCGTCAAACCC 58.826 55.000 0.00 0.00 0.00 4.11
691 889 2.781431 ATCCCCGTCAAACCCCTTGC 62.781 60.000 0.00 0.00 34.76 4.01
695 893 1.362355 CGTCAAACCCCTTGCAACC 59.638 57.895 0.00 0.00 34.76 3.77
696 894 1.362355 GTCAAACCCCTTGCAACCG 59.638 57.895 0.00 0.00 34.76 4.44
697 895 1.104577 GTCAAACCCCTTGCAACCGA 61.105 55.000 0.00 0.00 34.76 4.69
698 896 0.395862 TCAAACCCCTTGCAACCGAA 60.396 50.000 0.00 0.00 34.76 4.30
699 897 0.249280 CAAACCCCTTGCAACCGAAC 60.249 55.000 0.00 0.00 0.00 3.95
700 898 0.684805 AAACCCCTTGCAACCGAACA 60.685 50.000 0.00 0.00 0.00 3.18
701 899 0.684805 AACCCCTTGCAACCGAACAA 60.685 50.000 0.00 0.00 0.00 2.83
702 900 1.106944 ACCCCTTGCAACCGAACAAG 61.107 55.000 0.00 0.00 42.35 3.16
703 901 1.007387 CCCTTGCAACCGAACAAGC 60.007 57.895 0.00 0.00 41.56 4.01
704 902 1.007387 CCTTGCAACCGAACAAGCC 60.007 57.895 0.00 0.00 41.56 4.35
705 903 1.007387 CTTGCAACCGAACAAGCCC 60.007 57.895 0.00 0.00 37.11 5.19
723 921 2.691011 GCCCTACAACAAACAGGTCAAA 59.309 45.455 0.00 0.00 0.00 2.69
733 992 1.158007 ACAGGTCAAAGGATTGGGGT 58.842 50.000 0.00 0.00 37.15 4.95
735 994 2.171003 CAGGTCAAAGGATTGGGGTTC 58.829 52.381 0.00 0.00 37.15 3.62
736 995 1.786441 AGGTCAAAGGATTGGGGTTCA 59.214 47.619 0.00 0.00 37.15 3.18
743 1002 2.348472 AGGATTGGGGTTCAGAGTTCA 58.652 47.619 0.00 0.00 0.00 3.18
744 1003 2.040412 AGGATTGGGGTTCAGAGTTCAC 59.960 50.000 0.00 0.00 0.00 3.18
745 1004 2.437413 GATTGGGGTTCAGAGTTCACC 58.563 52.381 0.00 0.00 0.00 4.02
746 1005 0.107831 TTGGGGTTCAGAGTTCACCG 59.892 55.000 0.00 0.00 0.00 4.94
747 1006 0.761323 TGGGGTTCAGAGTTCACCGA 60.761 55.000 0.00 0.00 0.00 4.69
748 1007 0.395312 GGGGTTCAGAGTTCACCGAA 59.605 55.000 0.00 0.00 0.00 4.30
749 1008 1.202722 GGGGTTCAGAGTTCACCGAAA 60.203 52.381 0.00 0.00 0.00 3.46
751 1010 2.946990 GGGTTCAGAGTTCACCGAAAAA 59.053 45.455 0.00 0.00 0.00 1.94
752 1011 3.003378 GGGTTCAGAGTTCACCGAAAAAG 59.997 47.826 0.00 0.00 0.00 2.27
753 1012 3.003378 GGTTCAGAGTTCACCGAAAAAGG 59.997 47.826 0.00 0.00 37.30 3.11
754 1013 2.218603 TCAGAGTTCACCGAAAAAGGC 58.781 47.619 0.00 0.00 33.69 4.35
755 1014 2.158813 TCAGAGTTCACCGAAAAAGGCT 60.159 45.455 0.00 0.00 33.69 4.58
756 1015 2.618709 CAGAGTTCACCGAAAAAGGCTT 59.381 45.455 0.00 0.00 33.69 4.35
771 1030 2.697819 GCTTTCGCCCCGCTTTATA 58.302 52.632 0.00 0.00 0.00 0.98
772 1031 1.018910 GCTTTCGCCCCGCTTTATAA 58.981 50.000 0.00 0.00 0.00 0.98
774 1033 2.034179 GCTTTCGCCCCGCTTTATAAAT 59.966 45.455 0.00 0.00 0.00 1.40
775 1034 3.251487 GCTTTCGCCCCGCTTTATAAATA 59.749 43.478 0.00 0.00 0.00 1.40
776 1035 4.261280 GCTTTCGCCCCGCTTTATAAATAA 60.261 41.667 0.00 0.00 0.00 1.40
777 1036 5.733937 GCTTTCGCCCCGCTTTATAAATAAA 60.734 40.000 0.00 0.00 0.00 1.40
810 1724 4.505742 GGGTTCAGAGTTCAAGGTTCAGAT 60.506 45.833 0.00 0.00 0.00 2.90
814 1757 5.470368 TCAGAGTTCAAGGTTCAGATTACG 58.530 41.667 0.00 0.00 0.00 3.18
898 2264 3.091545 TCCTTGTTTGGATCCATGCTTC 58.908 45.455 17.06 5.34 0.00 3.86
999 2370 1.788229 TAGGATGGACGAGGCAATCA 58.212 50.000 0.00 0.00 0.00 2.57
1043 2420 4.376413 GCGTATATTTGACGGAAGCATCAG 60.376 45.833 0.00 0.00 40.66 2.90
1062 2439 5.060662 TCAGACCGACAGATCTAAAGTTG 57.939 43.478 0.00 0.00 0.00 3.16
1072 2449 6.862209 ACAGATCTAAAGTTGTCAGCTCTAG 58.138 40.000 0.00 0.00 0.00 2.43
1153 2530 5.525012 ACCGTTTACAAGGTAAACTTCACTC 59.475 40.000 22.35 3.17 39.30 3.51
1205 2600 1.344065 TACCTCACGTGGTTGGTCAT 58.656 50.000 24.28 9.72 41.22 3.06
1211 2606 3.395639 TCACGTGGTTGGTCATACTTTC 58.604 45.455 17.00 0.00 0.00 2.62
1213 2608 3.813166 CACGTGGTTGGTCATACTTTCTT 59.187 43.478 7.95 0.00 0.00 2.52
1233 2628 2.604969 TTTGTTTCGACATAAGCGCC 57.395 45.000 2.29 0.00 0.00 6.53
1237 2632 2.290916 TGTTTCGACATAAGCGCCAAAA 59.709 40.909 2.29 0.00 0.00 2.44
1238 2633 3.057876 TGTTTCGACATAAGCGCCAAAAT 60.058 39.130 2.29 0.00 0.00 1.82
1248 2643 7.691158 ACATAAGCGCCAAAATAAACTACTAC 58.309 34.615 2.29 0.00 0.00 2.73
1249 2644 5.556355 AAGCGCCAAAATAAACTACTACC 57.444 39.130 2.29 0.00 0.00 3.18
1250 2645 4.840271 AGCGCCAAAATAAACTACTACCT 58.160 39.130 2.29 0.00 0.00 3.08
1251 2646 4.634443 AGCGCCAAAATAAACTACTACCTG 59.366 41.667 2.29 0.00 0.00 4.00
1298 2712 8.075574 TGCAGAATTTTATCAATATTACCGCTG 58.924 33.333 0.00 0.00 0.00 5.18
1320 2734 4.202151 TGTGTCTATGTGCTATACTGCCAG 60.202 45.833 0.00 0.00 0.00 4.85
1322 2736 3.322254 GTCTATGTGCTATACTGCCAGGT 59.678 47.826 0.00 0.00 0.00 4.00
1494 3069 6.490566 AAAGTATTTCAACGCGAGGTTAAT 57.509 33.333 15.93 8.20 36.49 1.40
1503 3078 5.813672 TCAACGCGAGGTTAATAGCTTATTT 59.186 36.000 15.93 0.00 36.49 1.40
1589 3164 5.747951 ATCGAAAATGAAGGATCAAGAGC 57.252 39.130 0.00 0.00 39.49 4.09
1815 3425 6.877611 AATAAATGTTGAAAGACCTCACGT 57.122 33.333 0.00 0.00 0.00 4.49
1821 3431 4.120589 GTTGAAAGACCTCACGTTCTTCT 58.879 43.478 0.91 0.00 31.61 2.85
1830 3440 4.335594 ACCTCACGTTCTTCTTTCCTTTTG 59.664 41.667 0.00 0.00 0.00 2.44
2084 3694 7.237173 CGTAAGCAATTTCCAAAACAACAAAA 58.763 30.769 0.00 0.00 0.00 2.44
2306 3933 7.406916 TCATATTGTAGGTGGCCTCTTTTTAA 58.593 34.615 3.32 0.00 34.61 1.52
2309 3936 4.403734 TGTAGGTGGCCTCTTTTTAAAGG 58.596 43.478 3.32 0.00 36.67 3.11
2320 3947 7.254658 GGCCTCTTTTTAAAGGTTTAGCAAAAC 60.255 37.037 0.00 0.00 43.58 2.43
2335 3962 9.956797 GTTTAGCAAAACTATTTATGTTGCATG 57.043 29.630 9.13 0.00 45.47 4.06
2421 4053 4.647853 AGAAGGGTAATACAGTCGCATGTA 59.352 41.667 0.00 2.61 39.85 2.29
2422 4054 5.304614 AGAAGGGTAATACAGTCGCATGTAT 59.695 40.000 6.54 6.54 46.00 2.29
2423 4055 6.492429 AGAAGGGTAATACAGTCGCATGTATA 59.508 38.462 11.29 1.21 43.85 1.47
2424 4056 6.852420 AGGGTAATACAGTCGCATGTATAT 57.148 37.500 11.29 6.39 43.85 0.86
2425 4057 6.631016 AGGGTAATACAGTCGCATGTATATG 58.369 40.000 11.29 0.00 43.85 1.78
2440 4072 7.792374 CATGTATATGCTGTAAGACCTTTGT 57.208 36.000 0.00 0.00 34.07 2.83
2441 4073 7.633621 CATGTATATGCTGTAAGACCTTTGTG 58.366 38.462 0.00 0.00 34.07 3.33
2442 4074 6.941857 TGTATATGCTGTAAGACCTTTGTGA 58.058 36.000 0.00 0.00 34.07 3.58
2443 4075 7.564793 TGTATATGCTGTAAGACCTTTGTGAT 58.435 34.615 0.00 0.00 34.07 3.06
2444 4076 6.932356 ATATGCTGTAAGACCTTTGTGATG 57.068 37.500 0.00 0.00 34.07 3.07
2445 4077 4.350368 TGCTGTAAGACCTTTGTGATGA 57.650 40.909 0.00 0.00 34.07 2.92
2446 4078 4.910195 TGCTGTAAGACCTTTGTGATGAT 58.090 39.130 0.00 0.00 34.07 2.45
2447 4079 6.048732 TGCTGTAAGACCTTTGTGATGATA 57.951 37.500 0.00 0.00 34.07 2.15
2448 4080 5.874810 TGCTGTAAGACCTTTGTGATGATAC 59.125 40.000 0.00 0.00 34.07 2.24
2449 4081 6.109359 GCTGTAAGACCTTTGTGATGATACT 58.891 40.000 0.00 0.00 34.07 2.12
2450 4082 6.595716 GCTGTAAGACCTTTGTGATGATACTT 59.404 38.462 0.00 0.00 34.07 2.24
2451 4083 7.119846 GCTGTAAGACCTTTGTGATGATACTTT 59.880 37.037 0.00 0.00 34.07 2.66
2452 4084 8.547967 TGTAAGACCTTTGTGATGATACTTTC 57.452 34.615 0.00 0.00 0.00 2.62
2453 4085 8.375506 TGTAAGACCTTTGTGATGATACTTTCT 58.624 33.333 0.00 0.00 0.00 2.52
2454 4086 7.678947 AAGACCTTTGTGATGATACTTTCTG 57.321 36.000 0.00 0.00 0.00 3.02
2455 4087 6.176183 AGACCTTTGTGATGATACTTTCTGG 58.824 40.000 0.00 0.00 0.00 3.86
2456 4088 6.013379 AGACCTTTGTGATGATACTTTCTGGA 60.013 38.462 0.00 0.00 0.00 3.86
2457 4089 6.725364 ACCTTTGTGATGATACTTTCTGGAT 58.275 36.000 0.00 0.00 0.00 3.41
2458 4090 7.177878 ACCTTTGTGATGATACTTTCTGGATT 58.822 34.615 0.00 0.00 0.00 3.01
2459 4091 7.671398 ACCTTTGTGATGATACTTTCTGGATTT 59.329 33.333 0.00 0.00 0.00 2.17
2460 4092 8.526147 CCTTTGTGATGATACTTTCTGGATTTT 58.474 33.333 0.00 0.00 0.00 1.82
2461 4093 9.918630 CTTTGTGATGATACTTTCTGGATTTTT 57.081 29.630 0.00 0.00 0.00 1.94
2473 4105 8.100791 ACTTTCTGGATTTTTAATAAAAGGGCC 58.899 33.333 0.00 0.00 36.73 5.80
2474 4106 6.215495 TCTGGATTTTTAATAAAAGGGCCG 57.785 37.500 0.00 0.92 36.73 6.13
2475 4107 4.760878 TGGATTTTTAATAAAAGGGCCGC 58.239 39.130 0.00 0.00 36.73 6.53
2476 4108 4.223032 TGGATTTTTAATAAAAGGGCCGCA 59.777 37.500 0.00 0.00 36.73 5.69
2477 4109 5.104735 TGGATTTTTAATAAAAGGGCCGCAT 60.105 36.000 0.00 0.00 36.73 4.73
2478 4110 5.236263 GGATTTTTAATAAAAGGGCCGCATG 59.764 40.000 0.00 0.00 36.73 4.06
2479 4111 2.880963 TTAATAAAAGGGCCGCATGC 57.119 45.000 7.91 7.91 40.16 4.06
2480 4112 1.769026 TAATAAAAGGGCCGCATGCA 58.231 45.000 19.57 0.00 43.89 3.96
2481 4113 1.122227 AATAAAAGGGCCGCATGCAT 58.878 45.000 19.57 0.00 43.89 3.96
2482 4114 0.675633 ATAAAAGGGCCGCATGCATC 59.324 50.000 19.57 8.10 43.89 3.91
2483 4115 1.723608 TAAAAGGGCCGCATGCATCG 61.724 55.000 19.57 5.23 43.89 3.84
2484 4116 4.802051 AAGGGCCGCATGCATCGT 62.802 61.111 19.57 4.95 43.89 3.73
2487 4119 3.282157 GGCCGCATGCATCGTCAT 61.282 61.111 19.57 0.00 43.89 3.06
2488 4120 2.051614 GCCGCATGCATCGTCATG 60.052 61.111 19.57 9.53 44.93 3.07
2489 4121 2.536673 GCCGCATGCATCGTCATGA 61.537 57.895 19.57 0.00 44.94 3.07
2490 4122 1.848932 GCCGCATGCATCGTCATGAT 61.849 55.000 19.57 0.00 44.94 2.45
2498 4130 3.302375 ATCGTCATGATGCAGAGGC 57.698 52.632 10.24 0.00 35.45 4.70
2499 4131 0.250209 ATCGTCATGATGCAGAGGCC 60.250 55.000 10.24 0.00 40.13 5.19
2500 4132 2.242572 CGTCATGATGCAGAGGCCG 61.243 63.158 1.07 0.00 40.13 6.13
2501 4133 1.890979 GTCATGATGCAGAGGCCGG 60.891 63.158 0.00 0.00 40.13 6.13
2502 4134 2.593725 CATGATGCAGAGGCCGGG 60.594 66.667 2.18 0.00 40.13 5.73
2503 4135 3.882326 ATGATGCAGAGGCCGGGG 61.882 66.667 2.18 0.00 40.13 5.73
2505 4137 3.161450 GATGCAGAGGCCGGGGTA 61.161 66.667 2.18 0.00 40.13 3.69
2506 4138 2.448542 ATGCAGAGGCCGGGGTAT 60.449 61.111 2.18 0.00 40.13 2.73
2507 4139 1.152118 ATGCAGAGGCCGGGGTATA 60.152 57.895 2.18 0.00 40.13 1.47
2508 4140 1.481056 ATGCAGAGGCCGGGGTATAC 61.481 60.000 2.18 0.00 40.13 1.47
2509 4141 2.880380 GCAGAGGCCGGGGTATACC 61.880 68.421 13.99 13.99 39.11 2.73
2510 4142 1.152312 CAGAGGCCGGGGTATACCT 60.152 63.158 21.25 0.00 40.03 3.08
2511 4143 3.788807 GAGGCCGGGGTATACCTC 58.211 66.667 21.25 17.05 41.81 3.85
2512 4144 1.912264 GAGGCCGGGGTATACCTCC 60.912 68.421 21.25 18.17 42.44 4.30
2513 4145 2.122725 GGCCGGGGTATACCTCCA 60.123 66.667 21.25 0.00 40.03 3.86
2514 4146 1.538135 GGCCGGGGTATACCTCCAT 60.538 63.158 21.25 0.00 40.03 3.41
2515 4147 1.131928 GGCCGGGGTATACCTCCATT 61.132 60.000 21.25 0.00 40.03 3.16
2516 4148 0.769247 GCCGGGGTATACCTCCATTT 59.231 55.000 21.25 0.00 40.03 2.32
2517 4149 1.271217 GCCGGGGTATACCTCCATTTC 60.271 57.143 21.25 2.82 40.03 2.17
2518 4150 2.051692 CCGGGGTATACCTCCATTTCA 58.948 52.381 21.25 0.00 40.03 2.69
2519 4151 2.440253 CCGGGGTATACCTCCATTTCAA 59.560 50.000 21.25 0.00 40.03 2.69
2520 4152 3.117813 CCGGGGTATACCTCCATTTCAAA 60.118 47.826 21.25 0.00 40.03 2.69
2521 4153 4.528920 CGGGGTATACCTCCATTTCAAAA 58.471 43.478 21.25 0.00 40.03 2.44
2522 4154 4.951094 CGGGGTATACCTCCATTTCAAAAA 59.049 41.667 21.25 0.00 40.03 1.94
2613 4246 0.586802 GTGCCGCTCGTTTTTCTTCT 59.413 50.000 0.00 0.00 0.00 2.85
2615 4248 1.673920 TGCCGCTCGTTTTTCTTCTTT 59.326 42.857 0.00 0.00 0.00 2.52
2630 4263 6.767524 TTCTTCTTTGTGCTTCCTGTAAAA 57.232 33.333 0.00 0.00 0.00 1.52
2631 4264 6.377327 TCTTCTTTGTGCTTCCTGTAAAAG 57.623 37.500 0.00 0.00 0.00 2.27
2770 4403 9.394477 GTCAACAACCAAATATACTCTTTCAAC 57.606 33.333 0.00 0.00 0.00 3.18
2830 4467 4.469945 AGCTAAGTAGTGATTAAGCACCCA 59.530 41.667 19.73 5.97 39.59 4.51
2876 4554 8.270744 AGGAATTTGCATCTCTATGTACTTCTT 58.729 33.333 0.00 0.00 35.38 2.52
2936 5212 5.543507 TTTTTCATGGTGCCACAGTTTAT 57.456 34.783 0.00 0.00 0.00 1.40
3005 5305 0.608035 TTGATTCCAGAACCGTGCCC 60.608 55.000 0.00 0.00 0.00 5.36
3018 5318 1.451337 CGTGCCCACATGGTTTGTCA 61.451 55.000 0.00 0.00 36.00 3.58
3030 5330 3.850122 GGTTTGTCAACCCTATGCTTC 57.150 47.619 0.00 0.00 46.38 3.86
3044 5344 4.763793 CCTATGCTTCTACAAATCATGGGG 59.236 45.833 0.00 0.00 33.74 4.96
3089 5389 3.194116 CAGCTTTGTCAAATGGCAGGTAT 59.806 43.478 11.00 0.00 0.00 2.73
3257 5557 7.865385 GTGTTATTAATGAACTGGAAAGCACAA 59.135 33.333 0.00 0.00 0.00 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.591703 CTCTGCTTCCGGTGTGCTA 59.408 57.895 0.00 0.00 0.00 3.49
2 3 2.743928 CCTCTGCTTCCGGTGTGC 60.744 66.667 0.00 5.18 0.00 4.57
3 4 1.374758 GTCCTCTGCTTCCGGTGTG 60.375 63.158 0.00 0.00 0.00 3.82
5 6 2.125912 CGTCCTCTGCTTCCGGTG 60.126 66.667 0.00 0.00 0.00 4.94
8 9 4.821589 GCCCGTCCTCTGCTTCCG 62.822 72.222 0.00 0.00 0.00 4.30
9 10 3.672295 CTGCCCGTCCTCTGCTTCC 62.672 68.421 0.00 0.00 0.00 3.46
10 11 2.125350 CTGCCCGTCCTCTGCTTC 60.125 66.667 0.00 0.00 0.00 3.86
11 12 3.710722 CCTGCCCGTCCTCTGCTT 61.711 66.667 0.00 0.00 0.00 3.91
30 31 2.818274 GTCGTGAATCGGGCCACC 60.818 66.667 4.39 0.00 40.32 4.61
31 32 3.186047 CGTCGTGAATCGGGCCAC 61.186 66.667 4.39 0.00 40.32 5.01
32 33 3.350909 CTCGTCGTGAATCGGGCCA 62.351 63.158 4.39 0.00 40.32 5.36
33 34 2.351336 ATCTCGTCGTGAATCGGGCC 62.351 60.000 0.00 0.00 40.32 5.80
34 35 1.065928 ATCTCGTCGTGAATCGGGC 59.934 57.895 0.53 0.00 40.32 6.13
35 36 0.380733 TCATCTCGTCGTGAATCGGG 59.619 55.000 0.53 0.00 40.32 5.14
36 37 1.598183 CCTCATCTCGTCGTGAATCGG 60.598 57.143 0.53 0.00 40.32 4.18
37 38 1.064208 ACCTCATCTCGTCGTGAATCG 59.936 52.381 0.53 0.00 41.41 3.34
38 39 2.853731 ACCTCATCTCGTCGTGAATC 57.146 50.000 0.53 0.00 0.00 2.52
39 40 3.883489 TGATACCTCATCTCGTCGTGAAT 59.117 43.478 0.53 0.00 34.46 2.57
40 41 3.275999 TGATACCTCATCTCGTCGTGAA 58.724 45.455 0.53 0.00 34.46 3.18
41 42 2.914059 TGATACCTCATCTCGTCGTGA 58.086 47.619 0.00 0.00 34.46 4.35
42 43 3.692791 TTGATACCTCATCTCGTCGTG 57.307 47.619 0.00 0.00 34.46 4.35
43 44 3.181489 GGTTTGATACCTCATCTCGTCGT 60.181 47.826 0.00 0.00 44.10 4.34
44 45 3.372954 GGTTTGATACCTCATCTCGTCG 58.627 50.000 0.00 0.00 44.10 5.12
56 57 7.093945 ACCAGGATTTTACATGTGGTTTGATAC 60.094 37.037 9.11 0.00 34.58 2.24
57 58 6.951198 ACCAGGATTTTACATGTGGTTTGATA 59.049 34.615 9.11 0.00 34.58 2.15
58 59 5.779771 ACCAGGATTTTACATGTGGTTTGAT 59.220 36.000 9.11 0.00 34.58 2.57
59 60 5.010516 CACCAGGATTTTACATGTGGTTTGA 59.989 40.000 9.11 0.00 36.11 2.69
60 61 5.010516 TCACCAGGATTTTACATGTGGTTTG 59.989 40.000 9.11 0.00 36.11 2.93
61 62 5.144100 TCACCAGGATTTTACATGTGGTTT 58.856 37.500 9.11 0.00 36.11 3.27
62 63 4.735369 TCACCAGGATTTTACATGTGGTT 58.265 39.130 9.11 0.00 36.11 3.67
63 64 4.380843 TCACCAGGATTTTACATGTGGT 57.619 40.909 9.11 1.11 38.88 4.16
64 65 4.440525 GCATCACCAGGATTTTACATGTGG 60.441 45.833 9.11 0.38 32.57 4.17
65 66 4.675510 GCATCACCAGGATTTTACATGTG 58.324 43.478 9.11 0.00 32.57 3.21
66 67 3.378112 CGCATCACCAGGATTTTACATGT 59.622 43.478 2.69 2.69 32.57 3.21
67 68 3.243168 CCGCATCACCAGGATTTTACATG 60.243 47.826 0.00 0.00 32.57 3.21
68 69 2.951642 CCGCATCACCAGGATTTTACAT 59.048 45.455 0.00 0.00 32.57 2.29
69 70 2.364632 CCGCATCACCAGGATTTTACA 58.635 47.619 0.00 0.00 32.57 2.41
70 71 1.676006 CCCGCATCACCAGGATTTTAC 59.324 52.381 0.00 0.00 32.57 2.01
71 72 1.283613 ACCCGCATCACCAGGATTTTA 59.716 47.619 0.00 0.00 32.57 1.52
72 73 0.039618 ACCCGCATCACCAGGATTTT 59.960 50.000 0.00 0.00 32.57 1.82
73 74 0.394352 GACCCGCATCACCAGGATTT 60.394 55.000 0.00 0.00 32.57 2.17
74 75 1.224592 GACCCGCATCACCAGGATT 59.775 57.895 0.00 0.00 32.57 3.01
75 76 2.911143 GACCCGCATCACCAGGAT 59.089 61.111 0.00 0.00 36.39 3.24
76 77 3.770040 CGACCCGCATCACCAGGA 61.770 66.667 0.00 0.00 0.00 3.86
87 88 4.200283 GAGCTCTGAGGCGACCCG 62.200 72.222 6.43 0.00 37.29 5.28
88 89 3.844090 GGAGCTCTGAGGCGACCC 61.844 72.222 14.64 0.00 37.29 4.46
89 90 3.844090 GGGAGCTCTGAGGCGACC 61.844 72.222 14.64 0.00 37.29 4.79
90 91 2.362329 GATGGGAGCTCTGAGGCGAC 62.362 65.000 14.64 0.00 37.29 5.19
91 92 2.042537 ATGGGAGCTCTGAGGCGA 60.043 61.111 14.64 0.00 37.29 5.54
92 93 2.420890 GATGGGAGCTCTGAGGCG 59.579 66.667 14.64 0.00 37.29 5.52
93 94 1.145819 GTGATGGGAGCTCTGAGGC 59.854 63.158 14.64 0.00 0.00 4.70
94 95 0.907486 TTGTGATGGGAGCTCTGAGG 59.093 55.000 14.64 0.00 0.00 3.86
95 96 1.554160 ACTTGTGATGGGAGCTCTGAG 59.446 52.381 14.64 0.00 0.00 3.35
96 97 1.277273 CACTTGTGATGGGAGCTCTGA 59.723 52.381 14.64 0.14 0.00 3.27
97 98 1.678123 CCACTTGTGATGGGAGCTCTG 60.678 57.143 14.64 0.00 33.18 3.35
98 99 0.617413 CCACTTGTGATGGGAGCTCT 59.383 55.000 14.64 0.00 33.18 4.09
99 100 1.028868 GCCACTTGTGATGGGAGCTC 61.029 60.000 4.71 4.71 37.73 4.09
100 101 1.001641 GCCACTTGTGATGGGAGCT 60.002 57.895 1.89 0.00 37.73 4.09
101 102 2.048603 GGCCACTTGTGATGGGAGC 61.049 63.158 0.00 0.00 37.73 4.70
102 103 0.962356 GTGGCCACTTGTGATGGGAG 60.962 60.000 29.12 0.00 37.73 4.30
103 104 1.074775 GTGGCCACTTGTGATGGGA 59.925 57.895 29.12 0.00 37.73 4.37
104 105 0.612732 ATGTGGCCACTTGTGATGGG 60.613 55.000 34.75 0.00 37.73 4.00
105 106 1.745087 GTATGTGGCCACTTGTGATGG 59.255 52.381 34.75 0.00 40.50 3.51
106 107 1.398041 CGTATGTGGCCACTTGTGATG 59.602 52.381 34.75 16.09 0.00 3.07
107 108 1.003118 ACGTATGTGGCCACTTGTGAT 59.997 47.619 34.75 22.05 0.00 3.06
108 109 0.394938 ACGTATGTGGCCACTTGTGA 59.605 50.000 34.75 16.42 0.00 3.58
109 110 0.796312 GACGTATGTGGCCACTTGTG 59.204 55.000 34.75 25.03 0.00 3.33
110 111 0.394938 TGACGTATGTGGCCACTTGT 59.605 50.000 34.75 25.64 0.00 3.16
111 112 1.518325 TTGACGTATGTGGCCACTTG 58.482 50.000 34.75 22.88 0.00 3.16
112 113 2.264005 TTTGACGTATGTGGCCACTT 57.736 45.000 34.75 30.09 0.00 3.16
113 114 1.877443 GTTTTGACGTATGTGGCCACT 59.123 47.619 34.75 22.48 0.00 4.00
114 115 1.604755 TGTTTTGACGTATGTGGCCAC 59.395 47.619 29.67 29.67 0.00 5.01
115 116 1.604755 GTGTTTTGACGTATGTGGCCA 59.395 47.619 0.00 0.00 0.00 5.36
116 117 1.604755 TGTGTTTTGACGTATGTGGCC 59.395 47.619 0.00 0.00 0.00 5.36
117 118 2.032302 TGTGTGTTTTGACGTATGTGGC 59.968 45.455 0.00 0.00 0.00 5.01
118 119 3.064134 TGTGTGTGTTTTGACGTATGTGG 59.936 43.478 0.00 0.00 0.00 4.17
119 120 4.025750 GTGTGTGTGTTTTGACGTATGTG 58.974 43.478 0.00 0.00 0.00 3.21
120 121 3.685272 TGTGTGTGTGTTTTGACGTATGT 59.315 39.130 0.00 0.00 0.00 2.29
121 122 4.025750 GTGTGTGTGTGTTTTGACGTATG 58.974 43.478 0.00 0.00 0.00 2.39
122 123 3.685272 TGTGTGTGTGTGTTTTGACGTAT 59.315 39.130 0.00 0.00 0.00 3.06
123 124 3.064931 TGTGTGTGTGTGTTTTGACGTA 58.935 40.909 0.00 0.00 0.00 3.57
124 125 1.874231 TGTGTGTGTGTGTTTTGACGT 59.126 42.857 0.00 0.00 0.00 4.34
125 126 2.238363 GTGTGTGTGTGTGTTTTGACG 58.762 47.619 0.00 0.00 0.00 4.35
126 127 2.977169 GTGTGTGTGTGTGTGTTTTGAC 59.023 45.455 0.00 0.00 0.00 3.18
127 128 2.618709 TGTGTGTGTGTGTGTGTTTTGA 59.381 40.909 0.00 0.00 0.00 2.69
128 129 3.005341 TGTGTGTGTGTGTGTGTTTTG 57.995 42.857 0.00 0.00 0.00 2.44
129 130 3.717400 TTGTGTGTGTGTGTGTGTTTT 57.283 38.095 0.00 0.00 0.00 2.43
130 131 3.717400 TTTGTGTGTGTGTGTGTGTTT 57.283 38.095 0.00 0.00 0.00 2.83
131 132 3.717400 TTTTGTGTGTGTGTGTGTGTT 57.283 38.095 0.00 0.00 0.00 3.32
132 133 3.717400 TTTTTGTGTGTGTGTGTGTGT 57.283 38.095 0.00 0.00 0.00 3.72
167 168 0.835941 AGTCTCCCATGGACTGCATC 59.164 55.000 15.22 0.00 41.76 3.91
168 169 3.018280 AGTCTCCCATGGACTGCAT 57.982 52.632 15.22 0.00 41.76 3.96
169 170 4.567195 AGTCTCCCATGGACTGCA 57.433 55.556 15.22 0.00 41.76 4.41
172 173 2.472029 CCTAACAGTCTCCCATGGACT 58.528 52.381 15.22 5.96 43.81 3.85
173 174 1.134371 GCCTAACAGTCTCCCATGGAC 60.134 57.143 15.22 3.17 0.00 4.02
174 175 1.204146 GCCTAACAGTCTCCCATGGA 58.796 55.000 15.22 0.00 0.00 3.41
175 176 0.181350 GGCCTAACAGTCTCCCATGG 59.819 60.000 4.14 4.14 0.00 3.66
176 177 1.207791 AGGCCTAACAGTCTCCCATG 58.792 55.000 1.29 0.00 0.00 3.66
177 178 1.840635 GAAGGCCTAACAGTCTCCCAT 59.159 52.381 5.16 0.00 0.00 4.00
178 179 1.276622 GAAGGCCTAACAGTCTCCCA 58.723 55.000 5.16 0.00 0.00 4.37
179 180 0.542333 GGAAGGCCTAACAGTCTCCC 59.458 60.000 5.16 0.00 0.00 4.30
180 181 0.542333 GGGAAGGCCTAACAGTCTCC 59.458 60.000 5.16 7.37 0.00 3.71
181 182 1.276622 TGGGAAGGCCTAACAGTCTC 58.723 55.000 5.16 0.00 0.00 3.36
182 183 1.630878 CTTGGGAAGGCCTAACAGTCT 59.369 52.381 5.16 0.00 30.70 3.24
183 184 1.340114 CCTTGGGAAGGCCTAACAGTC 60.340 57.143 5.16 0.00 42.78 3.51
184 185 0.698818 CCTTGGGAAGGCCTAACAGT 59.301 55.000 5.16 0.00 42.78 3.55
185 186 3.577389 CCTTGGGAAGGCCTAACAG 57.423 57.895 5.16 0.00 42.78 3.16
194 195 8.348285 TGTTTCTTTATTATGACCTTGGGAAG 57.652 34.615 0.00 0.00 0.00 3.46
195 196 8.713708 TTGTTTCTTTATTATGACCTTGGGAA 57.286 30.769 0.00 0.00 0.00 3.97
196 197 7.396055 CCTTGTTTCTTTATTATGACCTTGGGA 59.604 37.037 0.00 0.00 0.00 4.37
197 198 7.396055 TCCTTGTTTCTTTATTATGACCTTGGG 59.604 37.037 0.00 0.00 0.00 4.12
198 199 8.348285 TCCTTGTTTCTTTATTATGACCTTGG 57.652 34.615 0.00 0.00 0.00 3.61
207 208 9.635404 TGGAGAGTTTTCCTTGTTTCTTTATTA 57.365 29.630 0.00 0.00 38.12 0.98
208 209 8.533569 TGGAGAGTTTTCCTTGTTTCTTTATT 57.466 30.769 0.00 0.00 38.12 1.40
209 210 8.533569 TTGGAGAGTTTTCCTTGTTTCTTTAT 57.466 30.769 0.00 0.00 38.12 1.40
210 211 7.832187 TCTTGGAGAGTTTTCCTTGTTTCTTTA 59.168 33.333 0.00 0.00 38.12 1.85
211 212 6.663523 TCTTGGAGAGTTTTCCTTGTTTCTTT 59.336 34.615 0.00 0.00 38.12 2.52
212 213 6.187682 TCTTGGAGAGTTTTCCTTGTTTCTT 58.812 36.000 0.00 0.00 38.12 2.52
213 214 5.755849 TCTTGGAGAGTTTTCCTTGTTTCT 58.244 37.500 0.00 0.00 38.12 2.52
214 215 6.294231 GGATCTTGGAGAGTTTTCCTTGTTTC 60.294 42.308 0.00 0.00 38.12 2.78
215 216 5.536538 GGATCTTGGAGAGTTTTCCTTGTTT 59.463 40.000 0.00 0.00 38.12 2.83
216 217 5.073428 GGATCTTGGAGAGTTTTCCTTGTT 58.927 41.667 0.00 0.00 38.12 2.83
217 218 4.104738 TGGATCTTGGAGAGTTTTCCTTGT 59.895 41.667 0.00 0.00 38.12 3.16
218 219 4.655963 TGGATCTTGGAGAGTTTTCCTTG 58.344 43.478 0.00 0.00 38.12 3.61
219 220 4.352298 ACTGGATCTTGGAGAGTTTTCCTT 59.648 41.667 0.00 0.00 38.12 3.36
220 221 3.913163 ACTGGATCTTGGAGAGTTTTCCT 59.087 43.478 0.00 0.00 38.12 3.36
221 222 4.257731 GACTGGATCTTGGAGAGTTTTCC 58.742 47.826 0.00 0.00 37.77 3.13
222 223 4.693095 GTGACTGGATCTTGGAGAGTTTTC 59.307 45.833 0.00 0.00 0.00 2.29
223 224 4.646572 GTGACTGGATCTTGGAGAGTTTT 58.353 43.478 0.00 0.00 0.00 2.43
224 225 3.306364 CGTGACTGGATCTTGGAGAGTTT 60.306 47.826 0.00 0.00 0.00 2.66
225 226 2.232452 CGTGACTGGATCTTGGAGAGTT 59.768 50.000 0.00 0.00 0.00 3.01
226 227 1.821753 CGTGACTGGATCTTGGAGAGT 59.178 52.381 0.00 0.00 0.00 3.24
227 228 1.135915 CCGTGACTGGATCTTGGAGAG 59.864 57.143 0.00 0.00 0.00 3.20
228 229 1.186200 CCGTGACTGGATCTTGGAGA 58.814 55.000 0.00 0.00 0.00 3.71
229 230 0.898320 ACCGTGACTGGATCTTGGAG 59.102 55.000 0.72 0.00 0.00 3.86
230 231 2.100197 CTACCGTGACTGGATCTTGGA 58.900 52.381 0.72 0.00 0.00 3.53
231 232 1.471676 GCTACCGTGACTGGATCTTGG 60.472 57.143 0.72 0.00 0.00 3.61
232 233 1.799181 CGCTACCGTGACTGGATCTTG 60.799 57.143 0.72 0.00 0.00 3.02
233 234 0.456221 CGCTACCGTGACTGGATCTT 59.544 55.000 0.72 0.00 0.00 2.40
234 235 2.107705 CGCTACCGTGACTGGATCT 58.892 57.895 0.72 0.00 0.00 2.75
235 236 4.711980 CGCTACCGTGACTGGATC 57.288 61.111 0.72 0.00 0.00 3.36
245 246 1.075542 TGAGCAATGAAACGCTACCG 58.924 50.000 0.00 0.00 38.99 4.02
246 247 3.764885 AATGAGCAATGAAACGCTACC 57.235 42.857 0.00 0.00 38.99 3.18
247 248 4.722194 TGAAATGAGCAATGAAACGCTAC 58.278 39.130 0.00 0.00 38.99 3.58
248 249 4.142622 CCTGAAATGAGCAATGAAACGCTA 60.143 41.667 0.00 0.00 38.99 4.26
249 250 3.366679 CCTGAAATGAGCAATGAAACGCT 60.367 43.478 0.00 0.00 42.42 5.07
250 251 2.919229 CCTGAAATGAGCAATGAAACGC 59.081 45.455 0.00 0.00 0.00 4.84
251 252 3.057315 ACCCTGAAATGAGCAATGAAACG 60.057 43.478 0.00 0.00 0.00 3.60
252 253 4.525912 ACCCTGAAATGAGCAATGAAAC 57.474 40.909 0.00 0.00 0.00 2.78
253 254 4.706476 CCTACCCTGAAATGAGCAATGAAA 59.294 41.667 0.00 0.00 0.00 2.69
254 255 4.263905 ACCTACCCTGAAATGAGCAATGAA 60.264 41.667 0.00 0.00 0.00 2.57
255 256 3.266772 ACCTACCCTGAAATGAGCAATGA 59.733 43.478 0.00 0.00 0.00 2.57
256 257 3.624777 ACCTACCCTGAAATGAGCAATG 58.375 45.455 0.00 0.00 0.00 2.82
257 258 4.227300 TGTACCTACCCTGAAATGAGCAAT 59.773 41.667 0.00 0.00 0.00 3.56
258 259 3.585289 TGTACCTACCCTGAAATGAGCAA 59.415 43.478 0.00 0.00 0.00 3.91
259 260 3.178046 TGTACCTACCCTGAAATGAGCA 58.822 45.455 0.00 0.00 0.00 4.26
260 261 3.197983 ACTGTACCTACCCTGAAATGAGC 59.802 47.826 0.00 0.00 0.00 4.26
261 262 4.141914 GGACTGTACCTACCCTGAAATGAG 60.142 50.000 0.00 0.00 0.00 2.90
262 263 3.773119 GGACTGTACCTACCCTGAAATGA 59.227 47.826 0.00 0.00 0.00 2.57
263 264 3.517901 TGGACTGTACCTACCCTGAAATG 59.482 47.826 0.00 0.00 0.00 2.32
264 265 3.775316 CTGGACTGTACCTACCCTGAAAT 59.225 47.826 0.00 0.00 0.00 2.17
265 266 3.170717 CTGGACTGTACCTACCCTGAAA 58.829 50.000 0.00 0.00 0.00 2.69
266 267 2.111255 ACTGGACTGTACCTACCCTGAA 59.889 50.000 0.00 0.00 0.00 3.02
267 268 1.714787 ACTGGACTGTACCTACCCTGA 59.285 52.381 0.00 0.00 0.00 3.86
268 269 2.100989 GACTGGACTGTACCTACCCTG 58.899 57.143 0.00 0.00 0.00 4.45
269 270 1.006878 GGACTGGACTGTACCTACCCT 59.993 57.143 0.00 0.00 0.00 4.34
270 271 1.272872 TGGACTGGACTGTACCTACCC 60.273 57.143 0.00 0.00 0.00 3.69
271 272 1.823610 GTGGACTGGACTGTACCTACC 59.176 57.143 0.00 0.00 0.00 3.18
272 273 2.522185 TGTGGACTGGACTGTACCTAC 58.478 52.381 0.00 0.00 0.00 3.18
273 274 2.984435 TGTGGACTGGACTGTACCTA 57.016 50.000 0.00 0.00 0.00 3.08
274 275 2.180276 GATGTGGACTGGACTGTACCT 58.820 52.381 0.00 0.00 0.00 3.08
275 276 2.180276 AGATGTGGACTGGACTGTACC 58.820 52.381 0.00 0.00 0.00 3.34
276 277 3.511934 AGAAGATGTGGACTGGACTGTAC 59.488 47.826 0.00 0.00 0.00 2.90
277 278 3.779444 AGAAGATGTGGACTGGACTGTA 58.221 45.455 0.00 0.00 0.00 2.74
278 279 2.614259 AGAAGATGTGGACTGGACTGT 58.386 47.619 0.00 0.00 0.00 3.55
279 280 3.007290 TGAAGAAGATGTGGACTGGACTG 59.993 47.826 0.00 0.00 0.00 3.51
280 281 3.242867 TGAAGAAGATGTGGACTGGACT 58.757 45.455 0.00 0.00 0.00 3.85
281 282 3.594134 CTGAAGAAGATGTGGACTGGAC 58.406 50.000 0.00 0.00 0.00 4.02
282 283 2.027745 GCTGAAGAAGATGTGGACTGGA 60.028 50.000 0.00 0.00 0.00 3.86
283 284 2.354259 GCTGAAGAAGATGTGGACTGG 58.646 52.381 0.00 0.00 0.00 4.00
284 285 2.027377 AGGCTGAAGAAGATGTGGACTG 60.027 50.000 0.00 0.00 0.00 3.51
285 286 2.027377 CAGGCTGAAGAAGATGTGGACT 60.027 50.000 9.42 0.00 0.00 3.85
286 287 2.354259 CAGGCTGAAGAAGATGTGGAC 58.646 52.381 9.42 0.00 0.00 4.02
287 288 1.339438 GCAGGCTGAAGAAGATGTGGA 60.339 52.381 20.86 0.00 0.00 4.02
288 289 1.093159 GCAGGCTGAAGAAGATGTGG 58.907 55.000 20.86 0.00 0.00 4.17
289 290 1.738350 CTGCAGGCTGAAGAAGATGTG 59.262 52.381 18.24 0.00 0.00 3.21
290 291 1.949547 GCTGCAGGCTGAAGAAGATGT 60.950 52.381 27.04 0.00 38.06 3.06
291 292 0.733729 GCTGCAGGCTGAAGAAGATG 59.266 55.000 27.04 0.00 38.06 2.90
292 293 0.394080 GGCTGCAGGCTGAAGAAGAT 60.394 55.000 31.40 0.00 41.46 2.40
293 294 1.002868 GGCTGCAGGCTGAAGAAGA 60.003 57.895 31.40 0.00 41.46 2.87
294 295 2.045131 GGGCTGCAGGCTGAAGAAG 61.045 63.158 35.64 13.69 41.46 2.85
295 296 2.034687 GGGCTGCAGGCTGAAGAA 59.965 61.111 35.64 3.08 41.46 2.52
296 297 4.039092 GGGGCTGCAGGCTGAAGA 62.039 66.667 35.64 3.86 41.46 2.87
307 308 4.767255 GAGCAGTGGACGGGGCTG 62.767 72.222 0.00 0.00 36.59 4.85
310 311 4.087892 CTGGAGCAGTGGACGGGG 62.088 72.222 0.00 0.00 0.00 5.73
311 312 4.087892 CCTGGAGCAGTGGACGGG 62.088 72.222 0.00 0.00 0.00 5.28
312 313 1.330655 ATACCTGGAGCAGTGGACGG 61.331 60.000 0.00 0.00 0.00 4.79
313 314 0.179100 CATACCTGGAGCAGTGGACG 60.179 60.000 0.00 0.00 0.00 4.79
314 315 0.905357 ACATACCTGGAGCAGTGGAC 59.095 55.000 0.00 0.00 0.00 4.02
315 316 2.108168 GTACATACCTGGAGCAGTGGA 58.892 52.381 0.00 0.00 0.00 4.02
316 317 1.831106 TGTACATACCTGGAGCAGTGG 59.169 52.381 0.00 0.00 0.00 4.00
317 318 2.233676 TGTGTACATACCTGGAGCAGTG 59.766 50.000 0.00 0.00 0.00 3.66
318 319 2.536066 TGTGTACATACCTGGAGCAGT 58.464 47.619 0.00 0.00 0.00 4.40
319 320 3.386078 AGATGTGTACATACCTGGAGCAG 59.614 47.826 0.00 0.00 36.57 4.24
320 321 3.374764 AGATGTGTACATACCTGGAGCA 58.625 45.455 0.00 0.00 36.57 4.26
321 322 4.100189 AGAAGATGTGTACATACCTGGAGC 59.900 45.833 0.00 0.00 36.57 4.70
322 323 5.221342 GGAGAAGATGTGTACATACCTGGAG 60.221 48.000 0.00 0.00 36.57 3.86
323 324 4.649674 GGAGAAGATGTGTACATACCTGGA 59.350 45.833 0.00 0.00 36.57 3.86
324 325 4.405680 TGGAGAAGATGTGTACATACCTGG 59.594 45.833 0.00 0.00 36.57 4.45
325 326 5.598416 TGGAGAAGATGTGTACATACCTG 57.402 43.478 0.00 0.00 36.57 4.00
326 327 5.958380 TCTTGGAGAAGATGTGTACATACCT 59.042 40.000 0.00 0.00 36.57 3.08
327 328 6.222038 TCTTGGAGAAGATGTGTACATACC 57.778 41.667 0.00 0.00 36.57 2.73
328 329 6.926272 GGATCTTGGAGAAGATGTGTACATAC 59.074 42.308 0.00 0.00 47.00 2.39
329 330 6.239036 CGGATCTTGGAGAAGATGTGTACATA 60.239 42.308 0.00 0.00 47.00 2.29
330 331 5.452496 CGGATCTTGGAGAAGATGTGTACAT 60.452 44.000 0.00 0.00 47.00 2.29
331 332 4.142160 CGGATCTTGGAGAAGATGTGTACA 60.142 45.833 2.04 0.00 47.00 2.90
332 333 4.363999 CGGATCTTGGAGAAGATGTGTAC 58.636 47.826 2.04 0.00 47.00 2.90
333 334 3.181475 GCGGATCTTGGAGAAGATGTGTA 60.181 47.826 2.04 0.00 47.00 2.90
334 335 2.419297 GCGGATCTTGGAGAAGATGTGT 60.419 50.000 2.04 0.00 47.00 3.72
335 336 2.158986 AGCGGATCTTGGAGAAGATGTG 60.159 50.000 2.04 0.00 47.00 3.21
336 337 2.114616 AGCGGATCTTGGAGAAGATGT 58.885 47.619 2.04 0.00 47.00 3.06
337 338 2.102084 TCAGCGGATCTTGGAGAAGATG 59.898 50.000 2.04 0.00 47.00 2.90
339 340 1.852633 TCAGCGGATCTTGGAGAAGA 58.147 50.000 0.00 0.00 42.53 2.87
340 341 2.680312 TTCAGCGGATCTTGGAGAAG 57.320 50.000 0.00 0.00 0.00 2.85
341 342 2.768527 AGATTCAGCGGATCTTGGAGAA 59.231 45.455 0.00 0.00 0.00 2.87
342 343 2.363680 GAGATTCAGCGGATCTTGGAGA 59.636 50.000 1.65 0.00 0.00 3.71
343 344 2.364970 AGAGATTCAGCGGATCTTGGAG 59.635 50.000 1.65 0.00 0.00 3.86
344 345 2.102084 CAGAGATTCAGCGGATCTTGGA 59.898 50.000 1.65 0.00 0.00 3.53
345 346 2.158986 ACAGAGATTCAGCGGATCTTGG 60.159 50.000 1.65 1.02 0.00 3.61
346 347 3.122297 GACAGAGATTCAGCGGATCTTG 58.878 50.000 1.65 4.94 0.00 3.02
347 348 3.030291 AGACAGAGATTCAGCGGATCTT 58.970 45.455 1.65 0.00 0.00 2.40
348 349 2.622942 GAGACAGAGATTCAGCGGATCT 59.377 50.000 0.00 0.00 0.00 2.75
349 350 2.360483 TGAGACAGAGATTCAGCGGATC 59.640 50.000 0.00 0.00 0.00 3.36
350 351 2.361757 CTGAGACAGAGATTCAGCGGAT 59.638 50.000 0.00 0.00 32.78 4.18
351 352 1.747924 CTGAGACAGAGATTCAGCGGA 59.252 52.381 0.00 0.00 32.78 5.54
352 353 2.206815 CTGAGACAGAGATTCAGCGG 57.793 55.000 0.00 0.00 32.78 5.52
355 356 2.094130 TGCTGCTGAGACAGAGATTCAG 60.094 50.000 0.00 1.84 40.25 3.02
356 357 1.897802 TGCTGCTGAGACAGAGATTCA 59.102 47.619 0.00 0.00 40.25 2.57
357 358 2.669300 TGCTGCTGAGACAGAGATTC 57.331 50.000 0.00 0.00 40.25 2.52
358 359 2.236644 ACATGCTGCTGAGACAGAGATT 59.763 45.455 0.00 0.00 40.25 2.40
359 360 1.832366 ACATGCTGCTGAGACAGAGAT 59.168 47.619 0.00 0.00 40.25 2.75
360 361 1.264295 ACATGCTGCTGAGACAGAGA 58.736 50.000 0.00 0.00 40.25 3.10
361 362 1.732809 CAACATGCTGCTGAGACAGAG 59.267 52.381 0.00 0.00 40.25 3.35
362 363 1.804601 CAACATGCTGCTGAGACAGA 58.195 50.000 0.00 0.00 40.25 3.41
363 364 0.168348 GCAACATGCTGCTGAGACAG 59.832 55.000 13.83 0.00 40.96 3.51
364 365 2.250646 GCAACATGCTGCTGAGACA 58.749 52.632 13.83 0.00 40.96 3.41
374 375 4.272991 TCAAATCAAACCAAAGCAACATGC 59.727 37.500 0.00 0.00 45.46 4.06
375 376 5.987777 TCAAATCAAACCAAAGCAACATG 57.012 34.783 0.00 0.00 0.00 3.21
376 377 7.419204 CAAATCAAATCAAACCAAAGCAACAT 58.581 30.769 0.00 0.00 0.00 2.71
377 378 6.677431 GCAAATCAAATCAAACCAAAGCAACA 60.677 34.615 0.00 0.00 0.00 3.33
378 379 5.682422 GCAAATCAAATCAAACCAAAGCAAC 59.318 36.000 0.00 0.00 0.00 4.17
379 380 5.221009 GGCAAATCAAATCAAACCAAAGCAA 60.221 36.000 0.00 0.00 0.00 3.91
380 381 4.275443 GGCAAATCAAATCAAACCAAAGCA 59.725 37.500 0.00 0.00 0.00 3.91
381 382 4.516321 AGGCAAATCAAATCAAACCAAAGC 59.484 37.500 0.00 0.00 0.00 3.51
382 383 7.442062 AGTTAGGCAAATCAAATCAAACCAAAG 59.558 33.333 0.00 0.00 0.00 2.77
383 384 7.278875 AGTTAGGCAAATCAAATCAAACCAAA 58.721 30.769 0.00 0.00 0.00 3.28
384 385 6.825610 AGTTAGGCAAATCAAATCAAACCAA 58.174 32.000 0.00 0.00 0.00 3.67
385 386 6.418057 AGTTAGGCAAATCAAATCAAACCA 57.582 33.333 0.00 0.00 0.00 3.67
396 397 9.771534 AGATCTCAACTTATAGTTAGGCAAATC 57.228 33.333 0.00 0.00 36.03 2.17
404 405 8.689061 TGCCGTTTAGATCTCAACTTATAGTTA 58.311 33.333 15.86 0.00 36.03 2.24
408 409 6.479001 GCTTGCCGTTTAGATCTCAACTTATA 59.521 38.462 15.86 0.23 0.00 0.98
409 410 5.294552 GCTTGCCGTTTAGATCTCAACTTAT 59.705 40.000 15.86 0.00 0.00 1.73
427 428 1.586303 GCTAAATTCGCGGCTTGCC 60.586 57.895 6.13 0.75 42.08 4.52
482 483 0.536006 CGGATCCCTTCCATTCAGGC 60.536 60.000 6.06 0.00 45.78 4.85
493 635 1.305887 AACTCCCGAACGGATCCCT 60.306 57.895 15.07 0.00 41.00 4.20
518 710 2.103373 TCTTCCCCAATGTCTCTCTCG 58.897 52.381 0.00 0.00 0.00 4.04
539 737 6.199393 TCTCACTCACGATACGAATACAATG 58.801 40.000 0.00 0.00 0.00 2.82
542 740 6.373186 AATCTCACTCACGATACGAATACA 57.627 37.500 0.00 0.00 0.00 2.29
544 742 7.440255 TGACTAATCTCACTCACGATACGAATA 59.560 37.037 0.00 0.00 0.00 1.75
545 743 6.260271 TGACTAATCTCACTCACGATACGAAT 59.740 38.462 0.00 0.00 0.00 3.34
548 746 5.006844 ACTGACTAATCTCACTCACGATACG 59.993 44.000 0.00 0.00 0.00 3.06
549 747 6.366315 ACTGACTAATCTCACTCACGATAC 57.634 41.667 0.00 0.00 0.00 2.24
550 748 8.678593 ATAACTGACTAATCTCACTCACGATA 57.321 34.615 0.00 0.00 0.00 2.92
554 752 7.427214 GGGTATAACTGACTAATCTCACTCAC 58.573 42.308 0.00 0.00 0.00 3.51
555 753 6.550108 GGGGTATAACTGACTAATCTCACTCA 59.450 42.308 0.00 0.00 0.00 3.41
558 756 5.839606 AGGGGGTATAACTGACTAATCTCAC 59.160 44.000 0.00 0.00 0.00 3.51
559 757 6.039415 AGGGGGTATAACTGACTAATCTCA 57.961 41.667 0.00 0.00 0.00 3.27
563 761 5.371769 GGGAAAGGGGGTATAACTGACTAAT 59.628 44.000 0.00 0.00 0.00 1.73
564 762 4.723285 GGGAAAGGGGGTATAACTGACTAA 59.277 45.833 0.00 0.00 0.00 2.24
565 763 4.265400 TGGGAAAGGGGGTATAACTGACTA 60.265 45.833 0.00 0.00 0.00 2.59
567 765 2.848071 TGGGAAAGGGGGTATAACTGAC 59.152 50.000 0.00 0.00 0.00 3.51
568 766 3.120108 CTGGGAAAGGGGGTATAACTGA 58.880 50.000 0.00 0.00 0.00 3.41
569 767 2.850568 ACTGGGAAAGGGGGTATAACTG 59.149 50.000 0.00 0.00 0.00 3.16
570 768 3.231699 ACTGGGAAAGGGGGTATAACT 57.768 47.619 0.00 0.00 0.00 2.24
571 769 3.181462 CGTACTGGGAAAGGGGGTATAAC 60.181 52.174 0.00 0.00 0.00 1.89
594 792 4.844884 AGAGAGGTTTAACCCAACATAGC 58.155 43.478 10.93 0.00 39.75 2.97
596 794 6.271391 TCTCAAGAGAGGTTTAACCCAACATA 59.729 38.462 10.93 0.00 39.75 2.29
627 825 0.259938 CCCCCTCCTCAATTCCCTTG 59.740 60.000 0.00 0.00 36.09 3.61
659 857 1.340991 ACGGGGATTGAAGTGGATTGG 60.341 52.381 0.00 0.00 0.00 3.16
664 862 1.539827 GTTTGACGGGGATTGAAGTGG 59.460 52.381 0.00 0.00 0.00 4.00
670 868 0.251608 AAGGGGTTTGACGGGGATTG 60.252 55.000 0.00 0.00 0.00 2.67
677 875 1.362355 GGTTGCAAGGGGTTTGACG 59.638 57.895 0.00 0.00 39.21 4.35
686 884 1.007387 GGCTTGTTCGGTTGCAAGG 60.007 57.895 0.00 0.00 41.54 3.61
691 889 1.265905 GTTGTAGGGCTTGTTCGGTTG 59.734 52.381 0.00 0.00 0.00 3.77
695 893 2.356382 TGTTTGTTGTAGGGCTTGTTCG 59.644 45.455 0.00 0.00 0.00 3.95
696 894 3.243401 CCTGTTTGTTGTAGGGCTTGTTC 60.243 47.826 0.00 0.00 0.00 3.18
697 895 2.693074 CCTGTTTGTTGTAGGGCTTGTT 59.307 45.455 0.00 0.00 0.00 2.83
698 896 2.306847 CCTGTTTGTTGTAGGGCTTGT 58.693 47.619 0.00 0.00 0.00 3.16
699 897 2.293399 GACCTGTTTGTTGTAGGGCTTG 59.707 50.000 0.00 0.00 36.65 4.01
700 898 2.092103 TGACCTGTTTGTTGTAGGGCTT 60.092 45.455 0.00 0.00 40.42 4.35
701 899 1.493022 TGACCTGTTTGTTGTAGGGCT 59.507 47.619 0.00 0.00 40.42 5.19
702 900 1.975660 TGACCTGTTTGTTGTAGGGC 58.024 50.000 0.00 0.00 40.18 5.19
703 901 3.317993 CCTTTGACCTGTTTGTTGTAGGG 59.682 47.826 0.00 0.00 35.89 3.53
704 902 4.204012 TCCTTTGACCTGTTTGTTGTAGG 58.796 43.478 0.00 0.00 37.61 3.18
705 903 6.208644 CAATCCTTTGACCTGTTTGTTGTAG 58.791 40.000 0.00 0.00 34.60 2.74
723 921 2.040412 GTGAACTCTGAACCCCAATCCT 59.960 50.000 0.00 0.00 0.00 3.24
733 992 2.616842 GCCTTTTTCGGTGAACTCTGAA 59.383 45.455 0.00 0.00 0.00 3.02
735 994 2.222027 AGCCTTTTTCGGTGAACTCTG 58.778 47.619 0.00 0.00 0.00 3.35
736 995 2.640316 AGCCTTTTTCGGTGAACTCT 57.360 45.000 0.00 0.00 0.00 3.24
754 1013 3.982576 ATTTATAAAGCGGGGCGAAAG 57.017 42.857 3.94 0.00 0.00 2.62
755 1014 5.823353 CTTTATTTATAAAGCGGGGCGAAA 58.177 37.500 8.78 0.00 41.69 3.46
756 1015 5.427036 CTTTATTTATAAAGCGGGGCGAA 57.573 39.130 8.78 0.00 41.69 4.70
769 1028 8.601546 TCTGAACCCCAATTTTGCTTTATTTAT 58.398 29.630 0.00 0.00 0.00 1.40
771 1030 6.836242 TCTGAACCCCAATTTTGCTTTATTT 58.164 32.000 0.00 0.00 0.00 1.40
772 1031 6.043127 ACTCTGAACCCCAATTTTGCTTTATT 59.957 34.615 0.00 0.00 0.00 1.40
774 1033 4.898861 ACTCTGAACCCCAATTTTGCTTTA 59.101 37.500 0.00 0.00 0.00 1.85
775 1034 3.711190 ACTCTGAACCCCAATTTTGCTTT 59.289 39.130 0.00 0.00 0.00 3.51
776 1035 3.308401 ACTCTGAACCCCAATTTTGCTT 58.692 40.909 0.00 0.00 0.00 3.91
777 1036 2.962859 ACTCTGAACCCCAATTTTGCT 58.037 42.857 0.00 0.00 0.00 3.91
778 1037 3.069443 TGAACTCTGAACCCCAATTTTGC 59.931 43.478 0.00 0.00 0.00 3.68
779 1038 4.935352 TGAACTCTGAACCCCAATTTTG 57.065 40.909 0.00 0.00 0.00 2.44
780 1039 4.344968 CCTTGAACTCTGAACCCCAATTTT 59.655 41.667 0.00 0.00 0.00 1.82
783 1042 2.447047 ACCTTGAACTCTGAACCCCAAT 59.553 45.455 0.00 0.00 0.00 3.16
784 1043 1.850345 ACCTTGAACTCTGAACCCCAA 59.150 47.619 0.00 0.00 0.00 4.12
785 1044 1.518367 ACCTTGAACTCTGAACCCCA 58.482 50.000 0.00 0.00 0.00 4.96
786 1045 2.158667 TGAACCTTGAACTCTGAACCCC 60.159 50.000 0.00 0.00 0.00 4.95
787 1046 3.142174 CTGAACCTTGAACTCTGAACCC 58.858 50.000 0.00 0.00 0.00 4.11
788 1047 4.073293 TCTGAACCTTGAACTCTGAACC 57.927 45.455 0.00 0.00 0.00 3.62
789 1048 6.128795 CGTAATCTGAACCTTGAACTCTGAAC 60.129 42.308 0.00 0.00 0.00 3.18
790 1049 5.926542 CGTAATCTGAACCTTGAACTCTGAA 59.073 40.000 0.00 0.00 0.00 3.02
791 1050 5.010719 ACGTAATCTGAACCTTGAACTCTGA 59.989 40.000 0.00 0.00 0.00 3.27
792 1051 5.230942 ACGTAATCTGAACCTTGAACTCTG 58.769 41.667 0.00 0.00 0.00 3.35
810 1724 4.521130 ACAAGAAGATGCTGAGACGTAA 57.479 40.909 0.00 0.00 0.00 3.18
938 2309 8.485591 GTGCTTAATTCGACATGTATACTTACC 58.514 37.037 0.00 0.00 0.00 2.85
947 2318 4.389992 CAGAGTGTGCTTAATTCGACATGT 59.610 41.667 0.00 0.00 0.00 3.21
948 2319 4.389992 ACAGAGTGTGCTTAATTCGACATG 59.610 41.667 0.00 0.00 0.00 3.21
999 2370 3.190535 GCTCCAATACGTTGTGTTCCATT 59.809 43.478 0.00 0.00 33.36 3.16
1009 2380 5.174398 CGTCAAATATACGCTCCAATACGTT 59.826 40.000 0.00 0.00 43.35 3.99
1043 2420 4.806330 TGACAACTTTAGATCTGTCGGTC 58.194 43.478 5.18 7.34 40.87 4.79
1047 2424 5.719173 AGAGCTGACAACTTTAGATCTGTC 58.281 41.667 5.18 4.52 36.01 3.51
1072 2449 4.940046 TGAGAAATTTCTGGTGATGCTCTC 59.060 41.667 25.12 6.90 37.73 3.20
1084 2461 7.327214 ACTATTCGCTCTTCTGAGAAATTTCT 58.673 34.615 20.60 20.60 42.73 2.52
1188 2583 1.275291 AGTATGACCAACCACGTGAGG 59.725 52.381 19.30 17.70 0.00 3.86
1205 2600 7.584847 CGCTTATGTCGAAACAAAAAGAAAGTA 59.415 33.333 0.00 0.00 39.30 2.24
1211 2606 3.360758 GGCGCTTATGTCGAAACAAAAAG 59.639 43.478 7.64 0.00 39.30 2.27
1213 2608 2.290916 TGGCGCTTATGTCGAAACAAAA 59.709 40.909 7.64 0.00 39.30 2.44
1298 2712 4.302455 CTGGCAGTATAGCACATAGACAC 58.698 47.826 6.28 0.00 35.83 3.67
1320 2734 5.953548 ACATACCACCCCAAAGTATTTTACC 59.046 40.000 0.00 0.00 35.03 2.85
1322 2736 6.071278 GCAACATACCACCCCAAAGTATTTTA 60.071 38.462 0.00 0.00 35.03 1.52
1481 3056 5.813672 TGAAATAAGCTATTAACCTCGCGTT 59.186 36.000 5.77 0.00 38.57 4.84
1482 3057 5.353938 TGAAATAAGCTATTAACCTCGCGT 58.646 37.500 5.77 0.00 0.00 6.01
1494 3069 7.508687 TCTTATGGCTGACATGAAATAAGCTA 58.491 34.615 6.18 0.00 40.82 3.32
1503 3078 7.814587 CGAACTATATTCTTATGGCTGACATGA 59.185 37.037 6.18 0.00 40.82 3.07
1567 3142 5.435291 AGCTCTTGATCCTTCATTTTCGAT 58.565 37.500 0.00 0.00 0.00 3.59
1589 3164 6.436261 TCTCTATTCTCGGCGTAAATGTAAG 58.564 40.000 6.85 7.52 0.00 2.34
1815 3425 4.709397 TGCAGAACCAAAAGGAAAGAAGAA 59.291 37.500 0.00 0.00 0.00 2.52
1821 3431 4.214310 TCATCTGCAGAACCAAAAGGAAA 58.786 39.130 22.50 0.00 0.00 3.13
1830 3440 4.578105 CCCTCTTAATTCATCTGCAGAACC 59.422 45.833 22.50 0.00 0.00 3.62
1874 3484 7.413000 CCGTCGCATATTCCCTTTATTATGAAG 60.413 40.741 0.00 0.00 0.00 3.02
2084 3694 8.441312 TGAATTGTAACGAAGGTAAAAGAAGT 57.559 30.769 0.00 0.00 0.00 3.01
2306 3933 9.203421 GCAACATAAATAGTTTTGCTAAACCTT 57.797 29.630 18.22 12.37 43.77 3.50
2309 3936 9.956797 CATGCAACATAAATAGTTTTGCTAAAC 57.043 29.630 14.81 14.81 42.48 2.01
2320 3947 7.859377 CCTTCTAACTGCATGCAACATAAATAG 59.141 37.037 22.88 14.56 0.00 1.73
2326 3953 3.424703 ACCTTCTAACTGCATGCAACAT 58.575 40.909 22.88 12.85 0.00 2.71
2335 3962 3.128764 GGCATACCAAACCTTCTAACTGC 59.871 47.826 0.00 0.00 35.26 4.40
2369 3997 8.771920 TCGAAAGAGTATGCTTTTATCTTTGA 57.228 30.769 3.42 0.42 39.61 2.69
2396 4028 4.546829 TGCGACTGTATTACCCTTCTTT 57.453 40.909 0.00 0.00 0.00 2.52
2421 4053 6.653020 TCATCACAAAGGTCTTACAGCATAT 58.347 36.000 0.00 0.00 0.00 1.78
2422 4054 6.048732 TCATCACAAAGGTCTTACAGCATA 57.951 37.500 0.00 0.00 0.00 3.14
2423 4055 4.910195 TCATCACAAAGGTCTTACAGCAT 58.090 39.130 0.00 0.00 0.00 3.79
2424 4056 4.350368 TCATCACAAAGGTCTTACAGCA 57.650 40.909 0.00 0.00 0.00 4.41
2425 4057 6.109359 AGTATCATCACAAAGGTCTTACAGC 58.891 40.000 0.00 0.00 0.00 4.40
2426 4058 8.553459 AAAGTATCATCACAAAGGTCTTACAG 57.447 34.615 0.00 0.00 0.00 2.74
2427 4059 8.375506 AGAAAGTATCATCACAAAGGTCTTACA 58.624 33.333 0.00 0.00 0.00 2.41
2428 4060 8.660373 CAGAAAGTATCATCACAAAGGTCTTAC 58.340 37.037 0.00 0.00 0.00 2.34
2429 4061 7.824289 CCAGAAAGTATCATCACAAAGGTCTTA 59.176 37.037 0.00 0.00 0.00 2.10
2430 4062 6.656693 CCAGAAAGTATCATCACAAAGGTCTT 59.343 38.462 0.00 0.00 0.00 3.01
2431 4063 6.013379 TCCAGAAAGTATCATCACAAAGGTCT 60.013 38.462 0.00 0.00 0.00 3.85
2432 4064 6.173339 TCCAGAAAGTATCATCACAAAGGTC 58.827 40.000 0.00 0.00 0.00 3.85
2433 4065 6.126863 TCCAGAAAGTATCATCACAAAGGT 57.873 37.500 0.00 0.00 0.00 3.50
2434 4066 7.636150 AATCCAGAAAGTATCATCACAAAGG 57.364 36.000 0.00 0.00 0.00 3.11
2435 4067 9.918630 AAAAATCCAGAAAGTATCATCACAAAG 57.081 29.630 0.00 0.00 0.00 2.77
2447 4079 8.100791 GGCCCTTTTATTAAAAATCCAGAAAGT 58.899 33.333 0.00 0.00 34.18 2.66
2448 4080 7.277760 CGGCCCTTTTATTAAAAATCCAGAAAG 59.722 37.037 0.00 0.00 34.18 2.62
2449 4081 7.100409 CGGCCCTTTTATTAAAAATCCAGAAA 58.900 34.615 0.00 0.00 34.18 2.52
2450 4082 6.635755 CGGCCCTTTTATTAAAAATCCAGAA 58.364 36.000 0.00 0.00 34.18 3.02
2451 4083 5.394773 GCGGCCCTTTTATTAAAAATCCAGA 60.395 40.000 0.00 0.00 34.18 3.86
2452 4084 4.808895 GCGGCCCTTTTATTAAAAATCCAG 59.191 41.667 0.00 3.67 34.18 3.86
2453 4085 4.223032 TGCGGCCCTTTTATTAAAAATCCA 59.777 37.500 0.00 0.00 34.18 3.41
2454 4086 4.760878 TGCGGCCCTTTTATTAAAAATCC 58.239 39.130 0.00 4.19 34.18 3.01
2455 4087 5.277297 GCATGCGGCCCTTTTATTAAAAATC 60.277 40.000 0.00 0.00 33.44 2.17
2456 4088 4.574421 GCATGCGGCCCTTTTATTAAAAAT 59.426 37.500 0.00 0.00 33.44 1.82
2457 4089 3.935828 GCATGCGGCCCTTTTATTAAAAA 59.064 39.130 0.00 0.00 36.11 1.94
2458 4090 3.055819 TGCATGCGGCCCTTTTATTAAAA 60.056 39.130 14.09 1.85 43.89 1.52
2459 4091 2.497675 TGCATGCGGCCCTTTTATTAAA 59.502 40.909 14.09 0.00 43.89 1.52
2460 4092 2.103373 TGCATGCGGCCCTTTTATTAA 58.897 42.857 14.09 0.00 43.89 1.40
2461 4093 1.769026 TGCATGCGGCCCTTTTATTA 58.231 45.000 14.09 0.00 43.89 0.98
2462 4094 1.069049 GATGCATGCGGCCCTTTTATT 59.931 47.619 14.09 0.00 43.89 1.40
2463 4095 0.675633 GATGCATGCGGCCCTTTTAT 59.324 50.000 14.09 0.00 43.89 1.40
2464 4096 1.723608 CGATGCATGCGGCCCTTTTA 61.724 55.000 14.09 0.00 43.89 1.52
2465 4097 2.894919 GATGCATGCGGCCCTTTT 59.105 55.556 14.09 0.00 43.89 2.27
2466 4098 3.520862 CGATGCATGCGGCCCTTT 61.521 61.111 14.09 0.00 43.89 3.11
2467 4099 4.802051 ACGATGCATGCGGCCCTT 62.802 61.111 14.09 0.00 43.89 3.95
2470 4102 3.282157 ATGACGATGCATGCGGCC 61.282 61.111 14.09 3.42 43.89 6.13
2471 4103 1.848932 ATCATGACGATGCATGCGGC 61.849 55.000 14.09 10.79 44.08 6.53
2472 4104 0.110373 CATCATGACGATGCATGCGG 60.110 55.000 14.09 7.44 44.95 5.69
2473 4105 3.361443 CATCATGACGATGCATGCG 57.639 52.632 14.09 10.48 44.95 4.73
2480 4112 0.250209 GGCCTCTGCATCATGACGAT 60.250 55.000 0.00 0.00 40.13 3.73
2481 4113 1.144716 GGCCTCTGCATCATGACGA 59.855 57.895 0.00 0.00 40.13 4.20
2482 4114 2.242572 CGGCCTCTGCATCATGACG 61.243 63.158 0.00 0.00 40.13 4.35
2483 4115 1.890979 CCGGCCTCTGCATCATGAC 60.891 63.158 0.00 0.00 40.13 3.06
2484 4116 2.507452 CCGGCCTCTGCATCATGA 59.493 61.111 0.00 0.00 40.13 3.07
2485 4117 2.593725 CCCGGCCTCTGCATCATG 60.594 66.667 0.00 0.00 40.13 3.07
2486 4118 3.882326 CCCCGGCCTCTGCATCAT 61.882 66.667 0.00 0.00 40.13 2.45
2487 4119 3.858220 TATACCCCGGCCTCTGCATCA 62.858 57.143 0.00 0.00 40.13 3.07
2488 4120 1.192146 TATACCCCGGCCTCTGCATC 61.192 60.000 0.00 0.00 40.13 3.91
2489 4121 1.152118 TATACCCCGGCCTCTGCAT 60.152 57.895 0.00 0.00 40.13 3.96
2490 4122 2.138179 GTATACCCCGGCCTCTGCA 61.138 63.158 0.00 0.00 40.13 4.41
2491 4123 2.741747 GTATACCCCGGCCTCTGC 59.258 66.667 0.00 0.00 0.00 4.26
2492 4124 1.152312 AGGTATACCCCGGCCTCTG 60.152 63.158 18.65 0.00 36.42 3.35
2493 4125 1.155624 GAGGTATACCCCGGCCTCT 59.844 63.158 18.65 0.00 42.99 3.69
2494 4126 1.912264 GGAGGTATACCCCGGCCTC 60.912 68.421 18.65 13.52 44.93 4.70
2495 4127 2.044777 ATGGAGGTATACCCCGGCCT 62.045 60.000 18.65 0.00 36.42 5.19
2496 4128 1.131928 AATGGAGGTATACCCCGGCC 61.132 60.000 18.65 14.56 36.42 6.13
2497 4129 0.769247 AAATGGAGGTATACCCCGGC 59.231 55.000 18.65 5.78 36.42 6.13
2498 4130 2.051692 TGAAATGGAGGTATACCCCGG 58.948 52.381 18.65 0.00 36.42 5.73
2499 4131 3.849563 TTGAAATGGAGGTATACCCCG 57.150 47.619 18.65 0.00 36.42 5.73
2524 4156 9.910267 TCATGCAGCTAAATATCCATATACATT 57.090 29.630 0.00 0.00 0.00 2.71
2545 4178 4.445385 GCGGAATTTTGTGGATTATCATGC 59.555 41.667 0.00 0.00 0.00 4.06
2551 4184 2.814919 ACGTGCGGAATTTTGTGGATTA 59.185 40.909 0.00 0.00 0.00 1.75
3018 5318 5.829924 CCATGATTTGTAGAAGCATAGGGTT 59.170 40.000 0.00 0.00 37.46 4.11
3089 5389 2.820178 TCTGTGCCTCCATCTTCTACA 58.180 47.619 0.00 0.00 0.00 2.74
3238 5538 7.759489 ACTATTTGTGCTTTCCAGTTCATTA 57.241 32.000 0.00 0.00 0.00 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.