Multiple sequence alignment - TraesCS3D01G542300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G542300 chr3D 100.000 7807 0 0 1 7807 613383261 613391067 0.000000e+00 14417.0
1 TraesCS3D01G542300 chr3D 87.692 845 42 18 2766 3580 557138966 557138154 0.000000e+00 928.0
2 TraesCS3D01G542300 chr3D 90.099 101 6 3 3481 3580 588923962 588923865 2.290000e-25 128.0
3 TraesCS3D01G542300 chr3D 88.525 61 6 1 7487 7546 325794213 325794273 1.090000e-08 73.1
4 TraesCS3D01G542300 chr3B 89.907 2368 99 50 822 3097 822676650 822678969 0.000000e+00 2920.0
5 TraesCS3D01G542300 chr3B 94.464 867 23 8 5368 6222 822681412 822682265 0.000000e+00 1312.0
6 TraesCS3D01G542300 chr3B 91.523 873 35 19 6224 7082 822682432 822683279 0.000000e+00 1166.0
7 TraesCS3D01G542300 chr3B 91.379 870 39 8 4315 5179 822680435 822681273 0.000000e+00 1158.0
8 TraesCS3D01G542300 chr3B 88.577 499 24 14 3616 4110 822679687 822680156 6.790000e-160 575.0
9 TraesCS3D01G542300 chr3B 88.818 313 17 5 2426 2737 754018944 754018649 1.240000e-97 368.0
10 TraesCS3D01G542300 chr3B 85.953 299 34 7 7197 7488 822685891 822686188 5.880000e-81 313.0
11 TraesCS3D01G542300 chr3B 84.112 321 22 13 11 323 822675515 822675814 4.610000e-72 283.0
12 TraesCS3D01G542300 chr3B 90.476 210 18 2 3268 3477 822679210 822679417 7.720000e-70 276.0
13 TraesCS3D01G542300 chr3B 96.639 119 4 0 3110 3228 822679021 822679139 1.720000e-46 198.0
14 TraesCS3D01G542300 chr3B 92.857 70 5 0 4176 4245 822680333 822680402 1.390000e-17 102.0
15 TraesCS3D01G542300 chr3B 92.857 42 2 1 108 149 825779673 825779713 8.460000e-05 60.2
16 TraesCS3D01G542300 chr3A 90.531 1901 92 37 5230 7088 748858843 748856989 0.000000e+00 2433.0
17 TraesCS3D01G542300 chr3A 92.419 831 34 12 1792 2619 748850488 748851292 0.000000e+00 1158.0
18 TraesCS3D01G542300 chr3A 93.713 684 28 5 1133 1805 748849779 748850458 0.000000e+00 1011.0
19 TraesCS3D01G542300 chr3A 93.412 592 31 3 4319 4902 748859928 748859337 0.000000e+00 870.0
20 TraesCS3D01G542300 chr3A 80.263 836 93 46 3311 4114 748860897 748860102 1.470000e-156 564.0
21 TraesCS3D01G542300 chr3A 95.441 329 11 3 2814 3142 748851314 748851638 8.980000e-144 521.0
22 TraesCS3D01G542300 chr3A 93.836 292 11 4 4935 5226 748859210 748858926 4.330000e-117 433.0
23 TraesCS3D01G542300 chr3A 87.156 327 32 8 7487 7805 748866866 748867190 5.760000e-96 363.0
24 TraesCS3D01G542300 chr3A 90.000 280 16 8 862 1129 748849459 748849738 1.250000e-92 351.0
25 TraesCS3D01G542300 chr3A 84.735 321 27 13 7488 7800 748854221 748853915 1.270000e-77 302.0
26 TraesCS3D01G542300 chr3A 85.000 300 38 5 7196 7491 748854738 748854442 1.650000e-76 298.0
27 TraesCS3D01G542300 chr3A 79.941 339 21 18 15 339 748848709 748849014 1.030000e-48 206.0
28 TraesCS3D01G542300 chr3A 97.500 120 3 0 3110 3229 748851645 748851764 1.030000e-48 206.0
29 TraesCS3D01G542300 chr3A 88.785 107 8 1 6976 7082 748863993 748864095 2.290000e-25 128.0
30 TraesCS3D01G542300 chr3A 98.182 55 1 0 7141 7195 748856741 748856687 6.450000e-16 97.1
31 TraesCS3D01G542300 chr3A 98.182 55 1 0 7141 7195 748864349 748864403 6.450000e-16 97.1
32 TraesCS3D01G542300 chr3A 84.043 94 13 2 6312 6404 96682833 96682741 1.080000e-13 89.8
33 TraesCS3D01G542300 chr5D 88.136 708 29 18 2893 3580 405783038 405783710 0.000000e+00 791.0
34 TraesCS3D01G542300 chr7A 83.813 729 91 21 4948 5667 83742699 83743409 0.000000e+00 667.0
35 TraesCS3D01G542300 chr7A 87.030 532 58 6 1828 2359 83738375 83738895 2.430000e-164 590.0
36 TraesCS3D01G542300 chr7A 79.749 558 66 30 2949 3479 83739729 83740266 2.070000e-95 361.0
37 TraesCS3D01G542300 chr7A 81.881 436 46 16 2517 2926 83739146 83739574 3.490000e-88 337.0
38 TraesCS3D01G542300 chr7A 79.783 460 69 18 4316 4766 83740843 83741287 5.880000e-81 313.0
39 TraesCS3D01G542300 chr7A 78.920 389 52 16 6446 6811 83745092 83745473 3.640000e-58 237.0
40 TraesCS3D01G542300 chr7A 79.944 354 43 11 1471 1805 83737940 83738284 1.310000e-57 235.0
41 TraesCS3D01G542300 chr7A 87.425 167 16 4 1231 1396 83737417 83737579 3.720000e-43 187.0
42 TraesCS3D01G542300 chr7A 86.164 159 14 6 4752 4902 83741849 83742007 1.740000e-36 165.0
43 TraesCS3D01G542300 chr7A 92.308 78 5 1 5749 5825 83743831 83743908 8.280000e-20 110.0
44 TraesCS3D01G542300 chr7A 93.182 44 2 1 104 147 83736197 83736239 6.540000e-06 63.9
45 TraesCS3D01G542300 chr7D 82.675 785 101 24 4948 5722 81781600 81782359 0.000000e+00 664.0
46 TraesCS3D01G542300 chr7D 86.823 554 63 5 1806 2359 81777710 81778253 1.860000e-170 610.0
47 TraesCS3D01G542300 chr7D 80.265 603 89 22 4316 4902 81780254 81780842 2.010000e-115 427.0
48 TraesCS3D01G542300 chr7D 82.232 439 48 11 2513 2926 81778498 81778931 1.250000e-92 351.0
49 TraesCS3D01G542300 chr7D 83.657 361 43 11 3122 3479 81779329 81779676 7.550000e-85 326.0
50 TraesCS3D01G542300 chr7D 81.039 385 47 13 6446 6811 81784288 81784665 4.610000e-72 283.0
51 TraesCS3D01G542300 chr7D 84.000 175 25 3 6276 6449 81784004 81784176 1.740000e-36 165.0
52 TraesCS3D01G542300 chr7D 86.726 113 11 2 2949 3061 81779061 81779169 1.060000e-23 122.0
53 TraesCS3D01G542300 chr7D 75.352 284 53 12 7209 7478 616461214 616461494 3.830000e-23 121.0
54 TraesCS3D01G542300 chr7D 73.529 238 52 10 7196 7425 74045158 74044924 6.490000e-11 80.5
55 TraesCS3D01G542300 chr7B 86.926 566 63 6 1806 2371 28936811 28937365 6.650000e-175 625.0
56 TraesCS3D01G542300 chr7B 85.877 439 49 10 5237 5667 28941129 28941562 9.230000e-124 455.0
57 TraesCS3D01G542300 chr7B 80.100 603 88 25 4316 4902 28939518 28940104 3.370000e-113 420.0
58 TraesCS3D01G542300 chr7B 82.265 468 51 15 2506 2948 28937600 28938060 7.400000e-100 375.0
59 TraesCS3D01G542300 chr7B 88.179 313 18 4 2426 2737 634239183 634239477 9.640000e-94 355.0
60 TraesCS3D01G542300 chr7B 83.934 361 42 12 3122 3479 28938592 28938939 1.620000e-86 331.0
61 TraesCS3D01G542300 chr7B 81.462 383 46 14 6446 6811 28943410 28943784 2.760000e-74 291.0
62 TraesCS3D01G542300 chr7B 87.234 141 18 0 6309 6449 28943154 28943294 2.250000e-35 161.0
63 TraesCS3D01G542300 chr7B 88.660 97 9 1 2949 3045 28938204 28938298 4.950000e-22 117.0
64 TraesCS3D01G542300 chr7B 74.747 297 55 11 7196 7478 561326507 561326797 1.780000e-21 115.0
65 TraesCS3D01G542300 chr7B 91.781 73 6 0 5749 5821 28941967 28942039 1.390000e-17 102.0
66 TraesCS3D01G542300 chr7B 89.189 74 7 1 2426 2498 396376714 396376787 3.000000e-14 91.6
67 TraesCS3D01G542300 chr7B 82.759 87 9 4 60 145 28755753 28755834 1.090000e-08 73.1
68 TraesCS3D01G542300 chr6B 89.103 312 17 5 2426 2737 35452524 35452230 9.570000e-99 372.0
69 TraesCS3D01G542300 chr2B 88.328 317 18 4 2426 2740 588848019 588848318 5.760000e-96 363.0
70 TraesCS3D01G542300 chr2B 88.000 50 6 0 6360 6409 17238072 17238023 8.460000e-05 60.2
71 TraesCS3D01G542300 chr5B 87.220 313 22 3 2426 2737 45134223 45133928 2.700000e-89 340.0
72 TraesCS3D01G542300 chr5B 75.000 292 58 14 7196 7478 491445394 491445679 3.830000e-23 121.0
73 TraesCS3D01G542300 chr4B 75.481 208 32 14 7284 7478 66542209 66542410 5.020000e-12 84.2
74 TraesCS3D01G542300 chr5A 72.260 292 65 14 7196 7477 576943765 576943480 8.400000e-10 76.8
75 TraesCS3D01G542300 chr2D 82.609 92 11 5 7380 7469 41264709 41264621 8.400000e-10 76.8
76 TraesCS3D01G542300 chr2D 100.000 28 0 0 864 891 5270536 5270563 1.400000e-02 52.8
77 TraesCS3D01G542300 chr1D 73.709 213 42 12 7196 7400 273472114 273471908 3.910000e-08 71.3
78 TraesCS3D01G542300 chr1D 100.000 28 0 0 864 891 49540499 49540526 1.400000e-02 52.8
79 TraesCS3D01G542300 chr1D 100.000 28 0 0 864 891 481722499 481722526 1.400000e-02 52.8
80 TraesCS3D01G542300 chrUn 90.385 52 5 0 6347 6398 37382174 37382123 1.410000e-07 69.4
81 TraesCS3D01G542300 chrUn 88.000 50 6 0 6360 6409 12518539 12518588 8.460000e-05 60.2
82 TraesCS3D01G542300 chr4A 74.214 159 33 8 7503 7654 47129970 47130127 8.460000e-05 60.2
83 TraesCS3D01G542300 chr2A 88.000 50 6 0 6360 6409 11869873 11869824 8.460000e-05 60.2
84 TraesCS3D01G542300 chr6D 100.000 28 0 0 864 891 38529182 38529155 1.400000e-02 52.8
85 TraesCS3D01G542300 chr6D 100.000 28 0 0 864 891 131662808 131662781 1.400000e-02 52.8
86 TraesCS3D01G542300 chr6A 100.000 28 0 0 864 891 194731666 194731693 1.400000e-02 52.8
87 TraesCS3D01G542300 chr6A 100.000 28 0 0 864 891 194782474 194782501 1.400000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G542300 chr3D 613383261 613391067 7806 False 14417.000000 14417 100.000000 1 7807 1 chr3D.!!$F2 7806
1 TraesCS3D01G542300 chr3D 557138154 557138966 812 True 928.000000 928 87.692000 2766 3580 1 chr3D.!!$R1 814
2 TraesCS3D01G542300 chr3B 822675515 822686188 10673 False 830.300000 2920 90.588700 11 7488 10 chr3B.!!$F2 7477
3 TraesCS3D01G542300 chr3A 748853915 748860897 6982 True 713.871429 2433 89.422714 3311 7800 7 chr3A.!!$R2 4489
4 TraesCS3D01G542300 chr3A 748848709 748851764 3055 False 575.500000 1158 91.502333 15 3229 6 chr3A.!!$F1 3214
5 TraesCS3D01G542300 chr5D 405783038 405783710 672 False 791.000000 791 88.136000 2893 3580 1 chr5D.!!$F1 687
6 TraesCS3D01G542300 chr7A 83736197 83745473 9276 False 296.900000 667 84.563545 104 6811 11 chr7A.!!$F1 6707
7 TraesCS3D01G542300 chr7D 81777710 81784665 6955 False 368.500000 664 83.427125 1806 6811 8 chr7D.!!$F2 5005
8 TraesCS3D01G542300 chr7B 28936811 28943784 6973 False 319.666667 625 85.359889 1806 6811 9 chr7B.!!$F5 5005

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
421 829 0.323302 TCCTGCGTTGCTTCATACCA 59.677 50.000 0.00 0.00 0.00 3.25 F
448 866 0.605589 CCAGGTGAGTCAGTCAGTCC 59.394 60.000 0.00 0.00 35.13 3.85 F
533 961 1.198713 TCCCTCCTTCATGCTCTGTC 58.801 55.000 0.00 0.00 0.00 3.51 F
534 962 1.202330 CCCTCCTTCATGCTCTGTCT 58.798 55.000 0.00 0.00 0.00 3.41 F
2249 3512 1.266718 TCTGATTCGTTTGCAGGTTGC 59.733 47.619 0.00 0.00 45.29 4.17 F
2642 4029 0.179037 GCTGATATGCTGCTGGACCA 60.179 55.000 0.00 0.00 38.32 4.02 F
3442 5405 0.325933 TGACAGTGCCTTCTCCATGG 59.674 55.000 4.97 4.97 0.00 3.66 F
4154 6397 0.911769 TATGCTGCAGCTACCAACCT 59.088 50.000 36.61 14.55 42.66 3.50 F
5926 10731 0.535335 TTGCTCTAACTAGCCGGTGG 59.465 55.000 1.90 0.00 42.05 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1557 2689 1.005630 AGCTGAACCGACTGCACTC 60.006 57.895 0.00 0.0 37.23 3.51 R
2230 3489 1.689959 GCAACCTGCAAACGAATCAG 58.310 50.000 0.00 0.0 44.26 2.90 R
2392 3695 2.306805 TCATGAGCTTCATCCAACACCT 59.693 45.455 0.00 0.0 34.28 4.00 R
2396 3699 4.260170 ACTTCTCATGAGCTTCATCCAAC 58.740 43.478 18.36 0.0 34.28 3.77 R
3670 5819 0.991920 TGACCTGAATCAAGACCCCC 59.008 55.000 0.00 0.0 0.00 5.40 R
4349 6672 1.280998 ACGGGGTTTCCAGATAACCTG 59.719 52.381 0.00 0.0 43.66 4.00 R
4862 7796 0.249073 CGAAGTATGGAGCGGAGTGG 60.249 60.000 0.00 0.0 0.00 4.00 R
6085 10894 2.163818 TGGCTACAAACTTGGAGTCG 57.836 50.000 1.97 0.0 46.78 4.18 R
7100 12442 0.108520 CCCAATGCATGCACTTGGTC 60.109 55.000 34.62 8.0 35.16 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 3.057946 GGAAGCAAGCAAGTACAAGGAAG 60.058 47.826 0.00 0.00 0.00 3.46
31 32 3.492102 AGCAAGCAAGTACAAGGAAGA 57.508 42.857 0.00 0.00 0.00 2.87
32 33 3.820557 AGCAAGCAAGTACAAGGAAGAA 58.179 40.909 0.00 0.00 0.00 2.52
49 50 4.713792 AAGAACTGGTCTTCACTTGGAT 57.286 40.909 1.18 0.00 43.49 3.41
86 91 6.646653 GGATTGGATTCAACAAAGGAAGAAAC 59.353 38.462 0.00 0.00 35.48 2.78
91 96 7.147759 TGGATTCAACAAAGGAAGAAACATCAA 60.148 33.333 0.00 0.00 0.00 2.57
92 97 7.874528 GGATTCAACAAAGGAAGAAACATCAAT 59.125 33.333 0.00 0.00 0.00 2.57
143 148 3.052186 CCCTTTCCTCCCCATTAATCCAA 60.052 47.826 0.00 0.00 0.00 3.53
144 149 4.389034 CCCTTTCCTCCCCATTAATCCAAT 60.389 45.833 0.00 0.00 0.00 3.16
145 150 4.835056 CCTTTCCTCCCCATTAATCCAATC 59.165 45.833 0.00 0.00 0.00 2.67
146 151 4.469469 TTCCTCCCCATTAATCCAATCC 57.531 45.455 0.00 0.00 0.00 3.01
147 152 3.412094 TCCTCCCCATTAATCCAATCCA 58.588 45.455 0.00 0.00 0.00 3.41
148 153 3.796694 TCCTCCCCATTAATCCAATCCAA 59.203 43.478 0.00 0.00 0.00 3.53
149 154 4.423275 TCCTCCCCATTAATCCAATCCAAT 59.577 41.667 0.00 0.00 0.00 3.16
150 155 4.774200 CCTCCCCATTAATCCAATCCAATC 59.226 45.833 0.00 0.00 0.00 2.67
151 156 4.750941 TCCCCATTAATCCAATCCAATCC 58.249 43.478 0.00 0.00 0.00 3.01
202 215 9.515020 GAATACTTGACAATTCTCTCTCTACTG 57.485 37.037 0.00 0.00 0.00 2.74
206 219 5.325239 TGACAATTCTCTCTCTACTGGACA 58.675 41.667 0.00 0.00 0.00 4.02
233 254 5.526111 GTGTTTGTTGCTTACTTACTCCTCA 59.474 40.000 0.00 0.00 0.00 3.86
301 322 4.045334 TCTCCTCCTCCTCTTCTTCTTCTT 59.955 45.833 0.00 0.00 0.00 2.52
302 323 4.349365 TCCTCCTCCTCTTCTTCTTCTTC 58.651 47.826 0.00 0.00 0.00 2.87
303 324 4.045334 TCCTCCTCCTCTTCTTCTTCTTCT 59.955 45.833 0.00 0.00 0.00 2.85
304 325 4.777366 CCTCCTCCTCTTCTTCTTCTTCTT 59.223 45.833 0.00 0.00 0.00 2.52
335 372 1.952296 CTTGCTTGTCCTTTCTGCTGT 59.048 47.619 0.00 0.00 0.00 4.40
348 385 2.747460 GCTGTTGCATCCTCGGCA 60.747 61.111 0.00 0.00 40.00 5.69
352 389 2.437180 TTGCATCCTCGGCAGCAG 60.437 61.111 0.00 0.00 43.05 4.24
353 390 3.258228 TTGCATCCTCGGCAGCAGT 62.258 57.895 0.00 0.00 43.05 4.40
354 391 3.200593 GCATCCTCGGCAGCAGTG 61.201 66.667 0.00 0.00 0.00 3.66
366 403 4.082523 GCAGTGGCGGCCTACTGA 62.083 66.667 35.00 12.62 45.46 3.41
367 404 2.903357 CAGTGGCGGCCTACTGAT 59.097 61.111 30.87 9.68 45.46 2.90
369 406 0.811616 CAGTGGCGGCCTACTGATTC 60.812 60.000 30.87 10.89 45.46 2.52
370 407 1.523938 GTGGCGGCCTACTGATTCC 60.524 63.158 21.46 0.00 0.00 3.01
371 408 2.111251 GGCGGCCTACTGATTCCC 59.889 66.667 12.87 0.00 0.00 3.97
372 409 2.111251 GCGGCCTACTGATTCCCC 59.889 66.667 0.00 0.00 0.00 4.81
373 410 2.829592 CGGCCTACTGATTCCCCC 59.170 66.667 0.00 0.00 0.00 5.40
403 811 2.125350 CTCCTCAGCTTGCCGGTC 60.125 66.667 1.90 0.00 0.00 4.79
411 819 3.726517 CTTGCCGGTCCTGCGTTG 61.727 66.667 1.90 0.00 0.00 4.10
416 824 2.664851 CGGTCCTGCGTTGCTTCA 60.665 61.111 0.00 0.00 0.00 3.02
418 826 0.739462 CGGTCCTGCGTTGCTTCATA 60.739 55.000 0.00 0.00 0.00 2.15
420 828 0.727398 GTCCTGCGTTGCTTCATACC 59.273 55.000 0.00 0.00 0.00 2.73
421 829 0.323302 TCCTGCGTTGCTTCATACCA 59.677 50.000 0.00 0.00 0.00 3.25
422 830 0.729116 CCTGCGTTGCTTCATACCAG 59.271 55.000 0.00 0.00 0.00 4.00
423 831 1.675714 CCTGCGTTGCTTCATACCAGA 60.676 52.381 0.00 0.00 0.00 3.86
424 832 1.394917 CTGCGTTGCTTCATACCAGAC 59.605 52.381 0.00 0.00 0.00 3.51
425 833 0.727398 GCGTTGCTTCATACCAGACC 59.273 55.000 0.00 0.00 0.00 3.85
427 835 1.732259 CGTTGCTTCATACCAGACCAC 59.268 52.381 0.00 0.00 0.00 4.16
444 862 3.223946 ACACCAGGTGAGTCAGTCA 57.776 52.632 27.39 0.00 36.96 3.41
445 863 1.043816 ACACCAGGTGAGTCAGTCAG 58.956 55.000 27.39 0.00 35.13 3.51
446 864 1.043816 CACCAGGTGAGTCAGTCAGT 58.956 55.000 15.35 0.00 35.13 3.41
448 866 0.605589 CCAGGTGAGTCAGTCAGTCC 59.394 60.000 0.00 0.00 35.13 3.85
465 889 3.746492 CAGTCCGTTTCCTTCCTTGTTAG 59.254 47.826 0.00 0.00 0.00 2.34
483 911 7.308830 CCTTGTTAGCTTGCTCTTCATTACTTT 60.309 37.037 0.00 0.00 0.00 2.66
486 914 8.094548 TGTTAGCTTGCTCTTCATTACTTTCTA 58.905 33.333 0.00 0.00 0.00 2.10
488 916 7.551035 AGCTTGCTCTTCATTACTTTCTATG 57.449 36.000 0.00 0.00 0.00 2.23
489 917 6.038050 AGCTTGCTCTTCATTACTTTCTATGC 59.962 38.462 0.00 0.00 0.00 3.14
490 918 6.038050 GCTTGCTCTTCATTACTTTCTATGCT 59.962 38.462 0.00 0.00 0.00 3.79
493 921 6.183360 TGCTCTTCATTACTTTCTATGCTTGC 60.183 38.462 0.00 0.00 0.00 4.01
495 923 7.312657 TCTTCATTACTTTCTATGCTTGCAG 57.687 36.000 0.87 0.00 0.00 4.41
496 924 6.881065 TCTTCATTACTTTCTATGCTTGCAGT 59.119 34.615 0.87 0.00 0.00 4.40
497 925 7.391554 TCTTCATTACTTTCTATGCTTGCAGTT 59.608 33.333 0.87 0.00 0.00 3.16
498 926 6.845302 TCATTACTTTCTATGCTTGCAGTTG 58.155 36.000 0.87 0.00 0.00 3.16
499 927 3.565905 ACTTTCTATGCTTGCAGTTGC 57.434 42.857 0.87 0.00 42.50 4.17
528 956 3.118531 ACATACTTCCCTCCTTCATGCT 58.881 45.455 0.00 0.00 0.00 3.79
529 957 3.135530 ACATACTTCCCTCCTTCATGCTC 59.864 47.826 0.00 0.00 0.00 4.26
532 960 1.558756 CTTCCCTCCTTCATGCTCTGT 59.441 52.381 0.00 0.00 0.00 3.41
533 961 1.198713 TCCCTCCTTCATGCTCTGTC 58.801 55.000 0.00 0.00 0.00 3.51
534 962 1.202330 CCCTCCTTCATGCTCTGTCT 58.798 55.000 0.00 0.00 0.00 3.41
540 968 5.048083 CCTCCTTCATGCTCTGTCTCTATAC 60.048 48.000 0.00 0.00 0.00 1.47
546 974 7.536159 TCATGCTCTGTCTCTATACATCAAT 57.464 36.000 0.00 0.00 0.00 2.57
552 980 8.306038 GCTCTGTCTCTATACATCAATCAATCT 58.694 37.037 0.00 0.00 0.00 2.40
587 1090 5.511202 CCTTCCTCCATGCTCTCTATCTTTC 60.511 48.000 0.00 0.00 0.00 2.62
603 1146 8.135382 TCTATCTTTCTTACACTACCTTGCTT 57.865 34.615 0.00 0.00 0.00 3.91
604 1147 8.035394 TCTATCTTTCTTACACTACCTTGCTTG 58.965 37.037 0.00 0.00 0.00 4.01
605 1148 5.925509 TCTTTCTTACACTACCTTGCTTGT 58.074 37.500 0.00 0.00 0.00 3.16
606 1149 6.354130 TCTTTCTTACACTACCTTGCTTGTT 58.646 36.000 0.00 0.00 0.00 2.83
646 1209 6.745794 TTTCCAATTTTCCACCAAATCTCT 57.254 33.333 0.00 0.00 0.00 3.10
648 1211 5.644188 TCCAATTTTCCACCAAATCTCTCT 58.356 37.500 0.00 0.00 0.00 3.10
649 1212 5.711976 TCCAATTTTCCACCAAATCTCTCTC 59.288 40.000 0.00 0.00 0.00 3.20
650 1213 5.713861 CCAATTTTCCACCAAATCTCTCTCT 59.286 40.000 0.00 0.00 0.00 3.10
658 1221 3.197549 ACCAAATCTCTCTCTTCTGCCTC 59.802 47.826 0.00 0.00 0.00 4.70
696 1263 2.363683 GCCTCCATTCTGGCTATATGC 58.636 52.381 0.00 0.00 45.26 3.14
699 1266 3.008813 CCTCCATTCTGGCTATATGCTGT 59.991 47.826 0.00 0.00 42.39 4.40
700 1267 4.252073 CTCCATTCTGGCTATATGCTGTC 58.748 47.826 0.00 0.00 42.39 3.51
704 1271 5.303165 CATTCTGGCTATATGCTGTCTTCA 58.697 41.667 0.00 0.00 42.39 3.02
707 1274 2.224042 TGGCTATATGCTGTCTTCACCG 60.224 50.000 0.00 0.00 42.39 4.94
718 1293 1.409427 GTCTTCACCGTATCCCTCCAG 59.591 57.143 0.00 0.00 0.00 3.86
732 1307 2.622436 CCTCCAGCTTACTGTTACTGC 58.378 52.381 0.00 0.00 42.81 4.40
735 1310 3.165875 TCCAGCTTACTGTTACTGCTCT 58.834 45.455 0.00 0.00 42.81 4.09
738 1313 2.564947 AGCTTACTGTTACTGCTCTGCT 59.435 45.455 0.00 0.00 0.00 4.24
739 1314 3.007398 AGCTTACTGTTACTGCTCTGCTT 59.993 43.478 0.00 0.00 0.00 3.91
740 1315 3.369451 GCTTACTGTTACTGCTCTGCTTC 59.631 47.826 0.00 0.00 0.00 3.86
741 1316 4.560128 CTTACTGTTACTGCTCTGCTTCA 58.440 43.478 0.00 0.00 0.00 3.02
742 1317 2.760374 ACTGTTACTGCTCTGCTTCAC 58.240 47.619 0.00 0.00 0.00 3.18
743 1318 2.103094 ACTGTTACTGCTCTGCTTCACA 59.897 45.455 0.00 0.00 0.00 3.58
745 1320 1.462670 GTTACTGCTCTGCTTCACAGC 59.537 52.381 0.00 0.00 46.76 4.40
755 1330 2.470196 GCTTCACAGCTGTATGCATG 57.530 50.000 21.20 6.20 45.94 4.06
757 1332 2.014857 CTTCACAGCTGTATGCATGCT 58.985 47.619 21.20 10.16 45.94 3.79
761 1336 2.933495 CAGCTGTATGCATGCTGTTT 57.067 45.000 22.88 10.72 46.23 2.83
762 1337 2.793933 CAGCTGTATGCATGCTGTTTC 58.206 47.619 22.88 8.81 46.23 2.78
763 1338 2.422479 CAGCTGTATGCATGCTGTTTCT 59.578 45.455 22.88 10.57 46.23 2.52
764 1339 3.087031 AGCTGTATGCATGCTGTTTCTT 58.913 40.909 20.33 0.00 45.94 2.52
765 1340 3.508793 AGCTGTATGCATGCTGTTTCTTT 59.491 39.130 20.33 0.00 45.94 2.52
766 1341 3.611113 GCTGTATGCATGCTGTTTCTTTG 59.389 43.478 20.33 1.69 42.31 2.77
767 1342 4.801891 CTGTATGCATGCTGTTTCTTTGT 58.198 39.130 20.33 0.00 0.00 2.83
769 1344 5.599732 TGTATGCATGCTGTTTCTTTGTTT 58.400 33.333 20.33 0.00 0.00 2.83
770 1345 5.462729 TGTATGCATGCTGTTTCTTTGTTTG 59.537 36.000 20.33 0.00 0.00 2.93
771 1346 2.608546 TGCATGCTGTTTCTTTGTTTGC 59.391 40.909 20.33 0.00 0.00 3.68
773 1348 3.544637 GCATGCTGTTTCTTTGTTTGCAC 60.545 43.478 11.37 0.00 0.00 4.57
775 1350 4.710423 TGCTGTTTCTTTGTTTGCACTA 57.290 36.364 0.00 0.00 0.00 2.74
776 1351 5.065704 TGCTGTTTCTTTGTTTGCACTAA 57.934 34.783 0.00 0.00 0.00 2.24
777 1352 5.101628 TGCTGTTTCTTTGTTTGCACTAAG 58.898 37.500 0.00 0.00 37.17 2.18
778 1353 5.105957 TGCTGTTTCTTTGTTTGCACTAAGA 60.106 36.000 0.00 0.00 41.32 2.10
779 1354 5.804979 GCTGTTTCTTTGTTTGCACTAAGAA 59.195 36.000 8.98 8.98 46.51 2.52
784 1359 6.131544 TCTTTGTTTGCACTAAGAAACTCC 57.868 37.500 0.00 0.00 40.47 3.85
785 1360 5.885912 TCTTTGTTTGCACTAAGAAACTCCT 59.114 36.000 0.00 0.00 40.47 3.69
788 1363 5.925509 TGTTTGCACTAAGAAACTCCTACT 58.074 37.500 0.00 0.00 33.92 2.57
790 1365 7.502696 TGTTTGCACTAAGAAACTCCTACTAA 58.497 34.615 0.00 0.00 33.92 2.24
791 1366 8.154856 TGTTTGCACTAAGAAACTCCTACTAAT 58.845 33.333 0.00 0.00 33.92 1.73
792 1367 9.000486 GTTTGCACTAAGAAACTCCTACTAATT 58.000 33.333 0.00 0.00 0.00 1.40
794 1369 9.649167 TTGCACTAAGAAACTCCTACTAATTAC 57.351 33.333 0.00 0.00 0.00 1.89
817 1416 3.857052 ACTGTATAACATCACCACACCG 58.143 45.455 0.00 0.00 0.00 4.94
818 1417 2.607635 CTGTATAACATCACCACACCGC 59.392 50.000 0.00 0.00 0.00 5.68
821 1420 2.102109 TAACATCACCACACCGCCGT 62.102 55.000 0.00 0.00 0.00 5.68
832 1431 2.737783 CACACCGCCGTTACTTCATTTA 59.262 45.455 0.00 0.00 0.00 1.40
835 1434 3.186817 CACCGCCGTTACTTCATTTACAA 59.813 43.478 0.00 0.00 0.00 2.41
844 1443 7.201530 CCGTTACTTCATTTACAAGACCATCTC 60.202 40.741 0.00 0.00 0.00 2.75
848 1447 8.697507 ACTTCATTTACAAGACCATCTCTTTT 57.302 30.769 0.00 0.00 37.08 2.27
887 1492 6.103330 GGATCTGGACAAGTAACTCTTCTTC 58.897 44.000 0.00 0.00 33.63 2.87
890 1495 5.602978 TCTGGACAAGTAACTCTTCTTCCTT 59.397 40.000 0.00 0.00 36.78 3.36
903 1512 9.853177 AACTCTTCTTCCTTCTTTCAGAAAATA 57.147 29.630 0.00 0.00 33.19 1.40
1027 1649 3.368323 GCCCTTCTATATCTGCTCTGCTC 60.368 52.174 0.00 0.00 0.00 4.26
1036 1658 1.271934 TCTGCTCTGCTCTCTTCACAC 59.728 52.381 0.00 0.00 0.00 3.82
1083 1705 4.760047 ACGGCCGCACAGATCACC 62.760 66.667 28.58 0.00 0.00 4.02
1131 1794 1.913419 TCCATCTTAACCACCACCCTC 59.087 52.381 0.00 0.00 0.00 4.30
1240 2065 3.502191 TTTGGTTCAACTGCAGTCAAC 57.498 42.857 21.95 23.32 0.00 3.18
1408 2233 9.194271 CAAGAACTGTATGTCATCTCTCATATG 57.806 37.037 0.00 0.00 0.00 1.78
1462 2593 7.119407 CACTTGCTGATTGATATATTCCTCCTG 59.881 40.741 0.00 0.00 0.00 3.86
1465 2596 5.585445 GCTGATTGATATATTCCTCCTGCTG 59.415 44.000 0.00 0.00 0.00 4.41
1543 2675 3.710722 CTTGGCCAGCTCTCCCGT 61.711 66.667 5.11 0.00 0.00 5.28
1557 2689 5.760253 AGCTCTCCCGTATGAAAATTATGTG 59.240 40.000 0.00 0.00 0.00 3.21
1587 2724 3.133901 TCGGTTCAGCTGCCTAATTATCA 59.866 43.478 9.47 0.00 0.00 2.15
1796 2961 6.240549 TCAGTTTCCTTCATATCCTTCCTC 57.759 41.667 0.00 0.00 0.00 3.71
2230 3489 9.444600 TTTTTCATTTATACCCTACTGACAGTC 57.555 33.333 12.39 0.00 0.00 3.51
2232 3491 7.348080 TCATTTATACCCTACTGACAGTCTG 57.652 40.000 12.39 6.46 0.00 3.51
2249 3512 1.266718 TCTGATTCGTTTGCAGGTTGC 59.733 47.619 0.00 0.00 45.29 4.17
2332 3599 5.507482 GCTCATCATGTACGAAGCCTACTAA 60.507 44.000 0.00 0.00 0.00 2.24
2333 3600 5.828747 TCATCATGTACGAAGCCTACTAAC 58.171 41.667 0.00 0.00 0.00 2.34
2334 3601 5.593095 TCATCATGTACGAAGCCTACTAACT 59.407 40.000 0.00 0.00 0.00 2.24
2335 3602 6.769341 TCATCATGTACGAAGCCTACTAACTA 59.231 38.462 0.00 0.00 0.00 2.24
2336 3603 7.447545 TCATCATGTACGAAGCCTACTAACTAT 59.552 37.037 0.00 0.00 0.00 2.12
2337 3604 7.578310 TCATGTACGAAGCCTACTAACTATT 57.422 36.000 0.00 0.00 0.00 1.73
2338 3605 8.681486 TCATGTACGAAGCCTACTAACTATTA 57.319 34.615 0.00 0.00 0.00 0.98
2434 3737 8.816894 TCATGAGAAGTAGTTCCTCTGTATTTT 58.183 33.333 6.68 0.00 32.48 1.82
2490 3877 7.490000 ACTAATCGGACTAGTGTTCTTTATGG 58.510 38.462 0.00 0.00 0.00 2.74
2630 4017 5.700402 AGTAAACCACTGGAAGCTGATAT 57.300 39.130 0.71 0.00 37.60 1.63
2631 4018 5.431765 AGTAAACCACTGGAAGCTGATATG 58.568 41.667 0.71 0.00 37.60 1.78
2632 4019 2.338577 ACCACTGGAAGCTGATATGC 57.661 50.000 0.71 0.00 37.60 3.14
2633 4020 1.842562 ACCACTGGAAGCTGATATGCT 59.157 47.619 0.71 0.00 46.40 3.79
2634 4021 2.219458 CCACTGGAAGCTGATATGCTG 58.781 52.381 0.00 0.00 43.24 4.41
2635 4022 1.602851 CACTGGAAGCTGATATGCTGC 59.397 52.381 0.00 0.00 43.24 5.25
2641 4028 2.626582 GCTGATATGCTGCTGGACC 58.373 57.895 0.00 0.00 38.32 4.46
2642 4029 0.179037 GCTGATATGCTGCTGGACCA 60.179 55.000 0.00 0.00 38.32 4.02
2643 4030 1.748244 GCTGATATGCTGCTGGACCAA 60.748 52.381 0.00 0.00 38.32 3.67
2644 4031 2.860009 CTGATATGCTGCTGGACCAAT 58.140 47.619 0.00 0.00 0.00 3.16
2764 4180 9.617975 CTTCCATTTCACTTTCATAGTTTCTTC 57.382 33.333 0.00 0.00 33.85 2.87
2907 4337 8.230486 CCACACTTCTGAAATTGTAAGTATGTC 58.770 37.037 4.50 0.00 31.20 3.06
2923 4358 6.885952 AGTATGTCGTATATCTGTCTGCTT 57.114 37.500 0.00 0.00 0.00 3.91
3015 4600 4.021925 GGCCCTGCTCCTGACGTT 62.022 66.667 0.00 0.00 0.00 3.99
3112 5016 8.885494 AACAATCTTATACTTGCTCTGATCTC 57.115 34.615 0.00 0.00 0.00 2.75
3258 5169 9.807386 CTTACGGTCATTTTGTTTCTTAAGTAG 57.193 33.333 1.63 0.00 0.00 2.57
3262 5222 9.968743 CGGTCATTTTGTTTCTTAAGTAGTATC 57.031 33.333 1.63 0.00 0.00 2.24
3335 5298 8.455598 TTTAAGTTTACACTCACTTTTGCAAC 57.544 30.769 0.00 0.00 34.92 4.17
3442 5405 0.325933 TGACAGTGCCTTCTCCATGG 59.674 55.000 4.97 4.97 0.00 3.66
3587 5624 7.987750 TGTTAATTTGCACATTGAGTACCTA 57.012 32.000 8.36 0.00 0.00 3.08
3589 5626 9.019656 TGTTAATTTGCACATTGAGTACCTAAT 57.980 29.630 8.36 0.00 0.00 1.73
3590 5627 9.503427 GTTAATTTGCACATTGAGTACCTAATC 57.497 33.333 8.36 0.00 0.00 1.75
3592 5629 7.886629 ATTTGCACATTGAGTACCTAATCAT 57.113 32.000 0.00 0.00 29.81 2.45
3594 5631 6.682423 TGCACATTGAGTACCTAATCATTG 57.318 37.500 0.00 4.09 37.55 2.82
3595 5632 6.179756 TGCACATTGAGTACCTAATCATTGT 58.820 36.000 5.07 5.07 42.11 2.71
3596 5633 6.658816 TGCACATTGAGTACCTAATCATTGTT 59.341 34.615 7.30 0.00 40.56 2.83
3597 5634 7.826744 TGCACATTGAGTACCTAATCATTGTTA 59.173 33.333 7.30 0.47 40.56 2.41
3598 5635 8.673711 GCACATTGAGTACCTAATCATTGTTAA 58.326 33.333 7.30 0.00 40.56 2.01
3604 5641 9.832445 TGAGTACCTAATCATTGTTAATCCTTC 57.168 33.333 0.00 0.00 0.00 3.46
3605 5642 9.274206 GAGTACCTAATCATTGTTAATCCTTCC 57.726 37.037 0.00 0.00 0.00 3.46
3606 5643 8.218488 AGTACCTAATCATTGTTAATCCTTCCC 58.782 37.037 0.00 0.00 0.00 3.97
3607 5644 7.226059 ACCTAATCATTGTTAATCCTTCCCT 57.774 36.000 0.00 0.00 0.00 4.20
3608 5645 7.290813 ACCTAATCATTGTTAATCCTTCCCTC 58.709 38.462 0.00 0.00 0.00 4.30
3609 5646 7.091993 ACCTAATCATTGTTAATCCTTCCCTCA 60.092 37.037 0.00 0.00 0.00 3.86
3611 5648 7.651027 AATCATTGTTAATCCTTCCCTCAAG 57.349 36.000 0.00 0.00 0.00 3.02
3612 5649 6.387192 TCATTGTTAATCCTTCCCTCAAGA 57.613 37.500 0.00 0.00 33.29 3.02
3613 5650 6.418101 TCATTGTTAATCCTTCCCTCAAGAG 58.582 40.000 0.00 0.00 33.29 2.85
3634 5783 4.778579 AGGAGGACTGTTCATGAATGATG 58.221 43.478 12.12 5.09 36.56 3.07
3652 5801 3.194329 TGATGAGTCGAATCAGACAGCTT 59.806 43.478 21.10 1.95 43.24 3.74
3828 6000 2.408050 TCTTTGACTCTCGAGCTTTGC 58.592 47.619 7.81 0.00 0.00 3.68
3841 6013 3.681897 CGAGCTTTGCAACTGATAGTCTT 59.318 43.478 0.00 0.00 0.00 3.01
3850 6022 8.484214 TTGCAACTGATAGTCTTATATCCTCT 57.516 34.615 0.00 0.00 32.18 3.69
3851 6023 7.890515 TGCAACTGATAGTCTTATATCCTCTG 58.109 38.462 0.00 0.00 32.18 3.35
4006 6178 3.816994 ACCAACCTTGACCTTCTTGTAC 58.183 45.455 0.00 0.00 0.00 2.90
4007 6179 3.146847 CCAACCTTGACCTTCTTGTACC 58.853 50.000 0.00 0.00 0.00 3.34
4008 6180 2.806244 CAACCTTGACCTTCTTGTACCG 59.194 50.000 0.00 0.00 0.00 4.02
4009 6181 1.346722 ACCTTGACCTTCTTGTACCGG 59.653 52.381 0.00 0.00 0.00 5.28
4010 6182 1.346722 CCTTGACCTTCTTGTACCGGT 59.653 52.381 13.98 13.98 0.00 5.28
4039 6211 4.843728 GAAGGATTCTATGTTCACACCCA 58.156 43.478 0.00 0.00 43.23 4.51
4104 6277 9.817809 ATGTTATGTTGACTGGTACTATAGTTG 57.182 33.333 11.40 2.41 0.00 3.16
4105 6278 9.027202 TGTTATGTTGACTGGTACTATAGTTGA 57.973 33.333 11.40 0.00 0.00 3.18
4110 6283 8.195436 TGTTGACTGGTACTATAGTTGAATAGC 58.805 37.037 11.40 2.78 33.49 2.97
4111 6284 7.891498 TGACTGGTACTATAGTTGAATAGCA 57.109 36.000 11.40 7.45 33.49 3.49
4112 6285 7.941919 TGACTGGTACTATAGTTGAATAGCAG 58.058 38.462 21.79 21.79 43.61 4.24
4113 6286 7.899648 ACTGGTACTATAGTTGAATAGCAGT 57.100 36.000 22.75 22.75 45.15 4.40
4114 6287 7.717568 ACTGGTACTATAGTTGAATAGCAGTG 58.282 38.462 25.62 10.95 46.99 3.66
4115 6288 7.342284 ACTGGTACTATAGTTGAATAGCAGTGT 59.658 37.037 25.62 11.42 46.99 3.55
4116 6289 7.713750 TGGTACTATAGTTGAATAGCAGTGTC 58.286 38.462 11.40 0.00 33.49 3.67
4117 6290 7.340999 TGGTACTATAGTTGAATAGCAGTGTCA 59.659 37.037 11.40 0.00 33.49 3.58
4118 6291 8.361139 GGTACTATAGTTGAATAGCAGTGTCAT 58.639 37.037 11.40 0.00 33.49 3.06
4119 6292 9.400638 GTACTATAGTTGAATAGCAGTGTCATC 57.599 37.037 11.40 0.00 33.49 2.92
4120 6293 8.243961 ACTATAGTTGAATAGCAGTGTCATCT 57.756 34.615 0.00 0.00 33.49 2.90
4121 6294 9.355916 ACTATAGTTGAATAGCAGTGTCATCTA 57.644 33.333 0.00 0.00 33.49 1.98
4124 6297 7.117285 AGTTGAATAGCAGTGTCATCTATGA 57.883 36.000 0.00 0.00 0.00 2.15
4126 6299 7.710044 AGTTGAATAGCAGTGTCATCTATGAAG 59.290 37.037 0.00 0.00 38.75 3.02
4153 6396 1.972872 ATATGCTGCAGCTACCAACC 58.027 50.000 36.61 8.49 42.66 3.77
4154 6397 0.911769 TATGCTGCAGCTACCAACCT 59.088 50.000 36.61 14.55 42.66 3.50
4169 6445 2.949644 CCAACCTTGGTTTCTTCGTCTT 59.050 45.455 1.76 0.00 43.43 3.01
4207 6492 6.071051 ACCTAGTTTTTCCTTTGCTTGTGAAA 60.071 34.615 0.00 0.00 0.00 2.69
4270 6579 5.300792 TGTTGGAGTTTTCAGACCCATTTAC 59.699 40.000 0.00 0.00 0.00 2.01
4271 6580 4.069304 TGGAGTTTTCAGACCCATTTACG 58.931 43.478 0.00 0.00 0.00 3.18
4274 6597 5.121298 GGAGTTTTCAGACCCATTTACGTAC 59.879 44.000 0.00 0.00 0.00 3.67
4277 6600 6.769341 AGTTTTCAGACCCATTTACGTACTTT 59.231 34.615 0.00 0.00 0.00 2.66
4290 6613 8.889717 CATTTACGTACTTTCCATTTCCAGTAT 58.110 33.333 0.00 0.00 0.00 2.12
4294 6617 6.154706 ACGTACTTTCCATTTCCAGTATCTCT 59.845 38.462 0.00 0.00 0.00 3.10
4376 6699 1.553248 TCTGGAAACCCCGTATGTCAG 59.447 52.381 0.00 0.00 37.93 3.51
4425 6748 6.650807 TCAGTATTGTCAATCAACTCCAGAAC 59.349 38.462 0.07 0.00 38.97 3.01
4844 7743 1.486726 GACCCAGGGTGGTATGAGAAG 59.513 57.143 19.03 0.00 39.24 2.85
4852 7778 2.706190 GGTGGTATGAGAAGGGTATGCT 59.294 50.000 0.00 0.00 0.00 3.79
4853 7779 3.901844 GGTGGTATGAGAAGGGTATGCTA 59.098 47.826 0.00 0.00 0.00 3.49
4854 7780 4.532521 GGTGGTATGAGAAGGGTATGCTAT 59.467 45.833 0.00 0.00 0.00 2.97
4869 7803 5.869888 GGTATGCTATTTTATCTCCACTCCG 59.130 44.000 0.00 0.00 0.00 4.63
4938 8717 6.038356 GCAGCTGTAGCAATTATTCAACATT 58.962 36.000 16.64 0.00 45.16 2.71
4940 8719 7.253883 GCAGCTGTAGCAATTATTCAACATTTC 60.254 37.037 16.64 0.00 45.16 2.17
4941 8720 7.221452 CAGCTGTAGCAATTATTCAACATTTCC 59.779 37.037 5.25 0.00 45.16 3.13
4943 8722 6.872920 TGTAGCAATTATTCAACATTTCCCC 58.127 36.000 0.00 0.00 0.00 4.81
4944 8723 6.438741 TGTAGCAATTATTCAACATTTCCCCA 59.561 34.615 0.00 0.00 0.00 4.96
4946 8725 6.350906 AGCAATTATTCAACATTTCCCCATG 58.649 36.000 0.00 0.00 0.00 3.66
4970 8757 2.095718 GCTTTCTTTTCAGTACTGCCGG 60.096 50.000 18.45 0.00 0.00 6.13
5017 8804 2.562298 AGGTGCCATTGTTGGTATTGTG 59.438 45.455 0.00 0.00 45.57 3.33
5026 8813 1.064060 GTTGGTATTGTGATCGCAGCC 59.936 52.381 9.26 13.03 0.00 4.85
5113 8900 1.096416 TTTCAAAGAAACGCACCGGT 58.904 45.000 0.00 0.00 0.00 5.28
5114 8901 1.950828 TTCAAAGAAACGCACCGGTA 58.049 45.000 6.87 0.00 0.00 4.02
5115 8902 2.172851 TCAAAGAAACGCACCGGTAT 57.827 45.000 6.87 0.00 0.00 2.73
5116 8903 3.316071 TCAAAGAAACGCACCGGTATA 57.684 42.857 6.87 0.00 0.00 1.47
5173 9005 9.653287 AAAACTGTTAGATGATTCAATCTCGTA 57.347 29.630 0.00 0.00 37.98 3.43
5281 9197 1.688735 AGTACAGAGTTGCAGCACTGA 59.311 47.619 29.00 13.46 34.88 3.41
5318 9234 8.578308 TTTTGACTTTTCAATATGAGTTGCTG 57.422 30.769 0.00 0.00 41.50 4.41
5322 9238 6.752168 ACTTTTCAATATGAGTTGCTGCTTT 58.248 32.000 0.00 0.00 0.00 3.51
5325 9241 6.816134 TTCAATATGAGTTGCTGCTTTACA 57.184 33.333 0.00 0.00 0.00 2.41
5701 9638 9.271828 CCCTGCAACTTTTGTTTTTCTATAAAT 57.728 29.630 0.00 0.00 41.35 1.40
5859 10616 6.608808 AGCTAGCCACCTCAAAATTTATCATT 59.391 34.615 12.13 0.00 0.00 2.57
5926 10731 0.535335 TTGCTCTAACTAGCCGGTGG 59.465 55.000 1.90 0.00 42.05 4.61
5931 10736 1.547372 TCTAACTAGCCGGTGGTTCAC 59.453 52.381 1.90 0.00 31.22 3.18
6085 10894 3.255642 TCAAGGCCAGCAACATTTTACTC 59.744 43.478 5.01 0.00 0.00 2.59
6130 10939 4.223964 GATTTCGGCCTGTCGCGC 62.224 66.667 0.00 0.00 38.94 6.86
6222 11031 2.232452 TGAGCAGGCTCTTCTCTTGTAC 59.768 50.000 20.79 0.00 43.12 2.90
6260 11358 9.371136 CACATATATATGTTGTCCACCATCTAC 57.629 37.037 23.03 0.00 43.99 2.59
6261 11359 9.326489 ACATATATATGTTGTCCACCATCTACT 57.674 33.333 20.49 0.00 43.99 2.57
6284 11464 5.686159 AGCTAGCTGCATTATTGATTGAC 57.314 39.130 18.57 0.00 45.94 3.18
6341 11521 1.829222 GACCCGGAGTATTTCCTGACA 59.171 52.381 0.73 0.00 44.41 3.58
6350 11530 4.319177 AGTATTTCCTGACACACAAGCTC 58.681 43.478 0.00 0.00 0.00 4.09
6435 11615 5.884792 CAGCCTATTTCTCATGGAAAGAACT 59.115 40.000 12.76 7.56 45.61 3.01
6449 11748 1.059913 AGAACTTGGTGAGGGAGGTG 58.940 55.000 0.00 0.00 0.00 4.00
6504 11803 2.366837 TGGATCTGCGGATGGGGT 60.367 61.111 14.17 0.00 31.46 4.95
6686 12012 4.028490 GATCCCACCCACACGCCA 62.028 66.667 0.00 0.00 0.00 5.69
6814 12144 2.303022 TCAACCCTCGCTGAGAAAGATT 59.697 45.455 7.07 0.00 0.00 2.40
6849 12179 4.286808 TGTGTGGAGCCTGCATATGTATAT 59.713 41.667 4.29 0.00 0.00 0.86
6850 12180 5.483583 TGTGTGGAGCCTGCATATGTATATA 59.516 40.000 4.29 0.00 0.00 0.86
6851 12181 6.045318 GTGTGGAGCCTGCATATGTATATAG 58.955 44.000 4.29 0.00 0.00 1.31
6852 12182 5.129320 TGTGGAGCCTGCATATGTATATAGG 59.871 44.000 4.29 6.23 0.00 2.57
6853 12183 5.363868 GTGGAGCCTGCATATGTATATAGGA 59.636 44.000 4.29 0.00 0.00 2.94
6902 12233 4.083749 TGTGTATTATGTGTCGTTTGTGCC 60.084 41.667 0.00 0.00 0.00 5.01
6935 12269 0.248565 TGCTCTGCTGCTGGTAGAAG 59.751 55.000 6.69 0.00 36.30 2.85
6939 12273 2.740981 CTCTGCTGCTGGTAGAAGTTTG 59.259 50.000 6.69 0.00 36.30 2.93
7071 12413 4.610605 TGACGTTTCTATTCCCTTGTGA 57.389 40.909 0.00 0.00 0.00 3.58
7072 12414 4.566004 TGACGTTTCTATTCCCTTGTGAG 58.434 43.478 0.00 0.00 0.00 3.51
7082 12424 3.795688 TCCCTTGTGAGATTTGCTTCT 57.204 42.857 0.00 0.00 0.00 2.85
7084 12426 5.241403 TCCCTTGTGAGATTTGCTTCTTA 57.759 39.130 0.00 0.00 0.00 2.10
7088 12430 5.649395 CCTTGTGAGATTTGCTTCTTATGGA 59.351 40.000 0.00 0.00 0.00 3.41
7089 12431 6.404074 CCTTGTGAGATTTGCTTCTTATGGAC 60.404 42.308 0.00 0.00 0.00 4.02
7090 12432 4.943705 TGTGAGATTTGCTTCTTATGGACC 59.056 41.667 0.00 0.00 0.00 4.46
7091 12433 4.034510 GTGAGATTTGCTTCTTATGGACCG 59.965 45.833 0.00 0.00 0.00 4.79
7092 12434 3.545703 AGATTTGCTTCTTATGGACCGG 58.454 45.455 0.00 0.00 0.00 5.28
7093 12435 1.459450 TTTGCTTCTTATGGACCGGC 58.541 50.000 0.00 0.00 0.00 6.13
7094 12436 0.326595 TTGCTTCTTATGGACCGGCA 59.673 50.000 0.00 0.00 0.00 5.69
7096 12438 0.947244 GCTTCTTATGGACCGGCATG 59.053 55.000 0.00 0.00 0.00 4.06
7097 12439 1.475034 GCTTCTTATGGACCGGCATGA 60.475 52.381 0.00 0.00 0.00 3.07
7099 12441 0.468226 TCTTATGGACCGGCATGACC 59.532 55.000 0.00 0.00 0.00 4.02
7110 12457 1.965930 GCATGACCGACCAAGTGCA 60.966 57.895 0.00 0.00 33.09 4.57
7135 12482 5.170748 GCATTGGGAAGGAATAACAAACTG 58.829 41.667 0.00 0.00 0.00 3.16
7136 12483 5.047377 GCATTGGGAAGGAATAACAAACTGA 60.047 40.000 0.00 0.00 0.00 3.41
7138 12485 4.069304 TGGGAAGGAATAACAAACTGACG 58.931 43.478 0.00 0.00 0.00 4.35
7139 12486 4.202377 TGGGAAGGAATAACAAACTGACGA 60.202 41.667 0.00 0.00 0.00 4.20
7187 12771 9.638239 TGTGAAAATAGGAATAACAAATGAAGC 57.362 29.630 0.00 0.00 0.00 3.86
7207 15243 6.369340 TGAAGCGTGTTTATTCCTATTTCGAA 59.631 34.615 0.00 0.00 0.00 3.71
7413 15455 2.128771 AATATTCGCACTGGCCTTGT 57.871 45.000 3.32 0.00 36.38 3.16
7417 15459 1.444119 TTCGCACTGGCCTTGTGTTC 61.444 55.000 23.44 11.83 37.70 3.18
7427 15469 0.878523 CCTTGTGTTCGAAGGACGCA 60.879 55.000 0.00 0.00 42.44 5.24
7437 15479 1.461888 CGAAGGACGCATTTGTTCGAC 60.462 52.381 0.00 0.00 41.96 4.20
7471 15513 1.602377 GTGGTTGGGTCTTTGAAGTCG 59.398 52.381 0.00 0.00 0.00 4.18
7493 15759 4.144731 CGTGAGTTCAATTTTTCAGCGAAC 59.855 41.667 0.00 0.00 36.95 3.95
7496 15762 5.004922 AGTTCAATTTTTCAGCGAACCAA 57.995 34.783 0.00 0.00 37.31 3.67
7498 15764 4.377839 TCAATTTTTCAGCGAACCAACA 57.622 36.364 0.00 0.00 0.00 3.33
7564 15831 5.179368 CCGCACAATATGTAAATAGTGGGAG 59.821 44.000 6.80 3.19 40.85 4.30
7569 15836 7.498900 CACAATATGTAAATAGTGGGAGCTTCA 59.501 37.037 5.41 0.00 27.77 3.02
7576 15843 4.402851 TGGGAGCTTCACACATGC 57.597 55.556 0.00 0.00 0.00 4.06
7579 15846 1.364626 GGGAGCTTCACACATGCGAG 61.365 60.000 0.00 0.00 0.00 5.03
7596 15863 1.835927 GAGCAAGACTGGGCCAGACT 61.836 60.000 38.99 33.71 38.02 3.24
7598 15865 1.757306 CAAGACTGGGCCAGACTGT 59.243 57.895 38.99 23.37 36.70 3.55
7648 15920 4.913335 AGTTTTCGGTTCCTTTTTCTCC 57.087 40.909 0.00 0.00 0.00 3.71
7652 15924 5.925506 TTTCGGTTCCTTTTTCTCCTTTT 57.074 34.783 0.00 0.00 0.00 2.27
7677 15949 5.792741 TGCATTCCCAGTTCTTATTTTTGG 58.207 37.500 0.00 0.00 0.00 3.28
7683 15955 9.725019 ATTCCCAGTTCTTATTTTTGGAAATTC 57.275 29.630 0.00 0.00 36.82 2.17
7800 16074 8.033038 TCGGATCTTTAAATATATTGTCCCTCG 58.967 37.037 0.00 0.00 0.00 4.63
7801 16075 7.817962 CGGATCTTTAAATATATTGTCCCTCGT 59.182 37.037 0.00 0.00 0.00 4.18
7802 16076 9.503399 GGATCTTTAAATATATTGTCCCTCGTT 57.497 33.333 0.00 0.00 0.00 3.85
7804 16078 8.897872 TCTTTAAATATATTGTCCCTCGTTCC 57.102 34.615 0.00 0.00 0.00 3.62
7805 16079 8.487848 TCTTTAAATATATTGTCCCTCGTTCCA 58.512 33.333 0.00 0.00 0.00 3.53
7806 16080 9.116067 CTTTAAATATATTGTCCCTCGTTCCAA 57.884 33.333 0.00 0.00 0.00 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.033909 ACTTGCTTGCTTCCTTCCTTTT 58.966 40.909 0.00 0.00 0.00 2.27
1 2 2.670939 ACTTGCTTGCTTCCTTCCTTT 58.329 42.857 0.00 0.00 0.00 3.11
2 3 2.371658 ACTTGCTTGCTTCCTTCCTT 57.628 45.000 0.00 0.00 0.00 3.36
3 4 2.106511 TGTACTTGCTTGCTTCCTTCCT 59.893 45.455 0.00 0.00 0.00 3.36
4 5 2.504367 TGTACTTGCTTGCTTCCTTCC 58.496 47.619 0.00 0.00 0.00 3.46
5 6 3.057946 CCTTGTACTTGCTTGCTTCCTTC 60.058 47.826 0.00 0.00 0.00 3.46
6 7 2.887152 CCTTGTACTTGCTTGCTTCCTT 59.113 45.455 0.00 0.00 0.00 3.36
7 8 2.106511 TCCTTGTACTTGCTTGCTTCCT 59.893 45.455 0.00 0.00 0.00 3.36
8 9 2.504367 TCCTTGTACTTGCTTGCTTCC 58.496 47.619 0.00 0.00 0.00 3.46
9 10 3.815401 TCTTCCTTGTACTTGCTTGCTTC 59.185 43.478 0.00 0.00 0.00 3.86
13 14 4.023707 CCAGTTCTTCCTTGTACTTGCTTG 60.024 45.833 0.00 0.00 0.00 4.01
30 31 3.503748 CCAATCCAAGTGAAGACCAGTTC 59.496 47.826 0.00 0.00 36.32 3.01
31 32 3.138283 TCCAATCCAAGTGAAGACCAGTT 59.862 43.478 0.00 0.00 38.91 3.16
32 33 2.711009 TCCAATCCAAGTGAAGACCAGT 59.289 45.455 0.00 0.00 0.00 4.00
47 48 6.042322 TGAATCCAATCCAATCCAATCCAATC 59.958 38.462 0.00 0.00 0.00 2.67
48 49 5.906495 TGAATCCAATCCAATCCAATCCAAT 59.094 36.000 0.00 0.00 0.00 3.16
49 50 5.278873 TGAATCCAATCCAATCCAATCCAA 58.721 37.500 0.00 0.00 0.00 3.53
99 104 0.540597 GGCAAGCTGAACCCTTCCTT 60.541 55.000 0.00 0.00 0.00 3.36
100 105 1.075659 GGCAAGCTGAACCCTTCCT 59.924 57.895 0.00 0.00 0.00 3.36
101 106 2.335712 CGGCAAGCTGAACCCTTCC 61.336 63.158 0.00 0.00 0.00 3.46
102 107 1.578206 GACGGCAAGCTGAACCCTTC 61.578 60.000 8.05 0.00 0.00 3.46
143 148 2.087461 GGGGAGCAGGGGATTGGAT 61.087 63.158 0.00 0.00 0.00 3.41
144 149 2.696125 GGGGAGCAGGGGATTGGA 60.696 66.667 0.00 0.00 0.00 3.53
145 150 2.625460 TTGGGGAGCAGGGGATTGG 61.625 63.158 0.00 0.00 0.00 3.16
146 151 1.380380 GTTGGGGAGCAGGGGATTG 60.380 63.158 0.00 0.00 0.00 2.67
147 152 2.626467 GGTTGGGGAGCAGGGGATT 61.626 63.158 0.00 0.00 0.00 3.01
148 153 3.023735 GGTTGGGGAGCAGGGGAT 61.024 66.667 0.00 0.00 0.00 3.85
149 154 4.608514 TGGTTGGGGAGCAGGGGA 62.609 66.667 0.00 0.00 0.00 4.81
150 155 2.861271 GATTGGTTGGGGAGCAGGGG 62.861 65.000 0.00 0.00 37.03 4.79
151 156 1.380380 GATTGGTTGGGGAGCAGGG 60.380 63.158 0.00 0.00 37.03 4.45
202 215 0.454196 AAGCAACAAACACGGTGTCC 59.546 50.000 15.09 0.00 0.00 4.02
206 219 4.193865 AGTAAGTAAGCAACAAACACGGT 58.806 39.130 0.00 0.00 0.00 4.83
233 254 8.146412 CCAAGAAGAAGAAGGATTGAAAAATGT 58.854 33.333 0.00 0.00 0.00 2.71
301 322 3.149196 CAAGCAAGCAAAGGGTAGAAGA 58.851 45.455 0.00 0.00 0.00 2.87
302 323 2.887152 ACAAGCAAGCAAAGGGTAGAAG 59.113 45.455 0.00 0.00 0.00 2.85
303 324 2.884639 GACAAGCAAGCAAAGGGTAGAA 59.115 45.455 0.00 0.00 0.00 2.10
304 325 2.504367 GACAAGCAAGCAAAGGGTAGA 58.496 47.619 0.00 0.00 0.00 2.59
335 372 2.437180 CTGCTGCCGAGGATGCAA 60.437 61.111 0.00 0.00 38.46 4.08
339 376 4.479993 GCCACTGCTGCCGAGGAT 62.480 66.667 11.38 0.00 33.53 3.24
348 385 4.087892 CAGTAGGCCGCCACTGCT 62.088 66.667 21.45 6.31 36.09 4.24
352 389 1.523938 GGAATCAGTAGGCCGCCAC 60.524 63.158 13.15 7.98 0.00 5.01
353 390 2.742116 GGGAATCAGTAGGCCGCCA 61.742 63.158 13.15 0.00 0.00 5.69
354 391 2.111251 GGGAATCAGTAGGCCGCC 59.889 66.667 0.00 0.00 0.00 6.13
372 409 1.759459 GAGGAGCGGTTGATAGGGGG 61.759 65.000 0.00 0.00 0.00 5.40
373 410 1.048724 TGAGGAGCGGTTGATAGGGG 61.049 60.000 0.00 0.00 0.00 4.79
374 411 0.390860 CTGAGGAGCGGTTGATAGGG 59.609 60.000 0.00 0.00 0.00 3.53
375 412 0.249657 GCTGAGGAGCGGTTGATAGG 60.250 60.000 0.00 0.00 34.87 2.57
376 413 3.280920 GCTGAGGAGCGGTTGATAG 57.719 57.895 0.00 0.00 34.87 2.08
403 811 0.729116 CTGGTATGAAGCAACGCAGG 59.271 55.000 0.00 0.00 31.48 4.85
408 816 2.484264 GTGTGGTCTGGTATGAAGCAAC 59.516 50.000 0.00 0.00 31.48 4.17
411 819 1.003118 TGGTGTGGTCTGGTATGAAGC 59.997 52.381 0.00 0.00 0.00 3.86
412 820 2.355108 CCTGGTGTGGTCTGGTATGAAG 60.355 54.545 0.00 0.00 0.00 3.02
414 822 1.275666 CCTGGTGTGGTCTGGTATGA 58.724 55.000 0.00 0.00 0.00 2.15
416 824 0.984230 CACCTGGTGTGGTCTGGTAT 59.016 55.000 18.76 0.00 41.52 2.73
418 826 1.383943 TCACCTGGTGTGGTCTGGT 60.384 57.895 25.15 0.00 45.48 4.00
420 828 0.034059 GACTCACCTGGTGTGGTCTG 59.966 60.000 29.38 17.44 45.48 3.51
421 829 0.398522 TGACTCACCTGGTGTGGTCT 60.399 55.000 32.53 17.90 45.48 3.85
422 830 0.034059 CTGACTCACCTGGTGTGGTC 59.966 60.000 29.68 29.68 45.48 4.02
423 831 0.691078 ACTGACTCACCTGGTGTGGT 60.691 55.000 27.05 23.92 45.48 4.16
424 832 0.034059 GACTGACTCACCTGGTGTGG 59.966 60.000 27.05 21.49 45.48 4.17
425 833 0.752658 TGACTGACTCACCTGGTGTG 59.247 55.000 25.15 24.20 46.88 3.82
427 835 1.000283 GACTGACTGACTCACCTGGTG 60.000 57.143 20.86 20.86 34.45 4.17
444 862 3.806157 GCTAACAAGGAAGGAAACGGACT 60.806 47.826 0.00 0.00 0.00 3.85
445 863 2.483106 GCTAACAAGGAAGGAAACGGAC 59.517 50.000 0.00 0.00 0.00 4.79
446 864 2.370849 AGCTAACAAGGAAGGAAACGGA 59.629 45.455 0.00 0.00 0.00 4.69
448 866 3.609409 GCAAGCTAACAAGGAAGGAAACG 60.609 47.826 0.00 0.00 0.00 3.60
465 889 6.038050 AGCATAGAAAGTAATGAAGAGCAAGC 59.962 38.462 0.00 0.00 0.00 4.01
495 923 5.671493 AGGGAAGTATGTATGTAGTGCAAC 58.329 41.667 0.00 0.00 0.00 4.17
496 924 5.163343 GGAGGGAAGTATGTATGTAGTGCAA 60.163 44.000 0.00 0.00 0.00 4.08
497 925 4.344102 GGAGGGAAGTATGTATGTAGTGCA 59.656 45.833 0.00 0.00 0.00 4.57
498 926 4.589374 AGGAGGGAAGTATGTATGTAGTGC 59.411 45.833 0.00 0.00 0.00 4.40
499 927 6.323996 TGAAGGAGGGAAGTATGTATGTAGTG 59.676 42.308 0.00 0.00 0.00 2.74
500 928 6.441222 TGAAGGAGGGAAGTATGTATGTAGT 58.559 40.000 0.00 0.00 0.00 2.73
503 931 5.455326 GCATGAAGGAGGGAAGTATGTATGT 60.455 44.000 0.00 0.00 0.00 2.29
504 932 4.999950 GCATGAAGGAGGGAAGTATGTATG 59.000 45.833 0.00 0.00 0.00 2.39
505 933 4.910304 AGCATGAAGGAGGGAAGTATGTAT 59.090 41.667 0.00 0.00 0.00 2.29
506 934 4.298626 AGCATGAAGGAGGGAAGTATGTA 58.701 43.478 0.00 0.00 0.00 2.29
507 935 3.118531 AGCATGAAGGAGGGAAGTATGT 58.881 45.455 0.00 0.00 0.00 2.29
508 936 3.390639 AGAGCATGAAGGAGGGAAGTATG 59.609 47.826 0.00 0.00 0.00 2.39
511 939 1.558756 CAGAGCATGAAGGAGGGAAGT 59.441 52.381 0.00 0.00 0.00 3.01
546 974 7.567250 TGGAGGAAGGTAACATACATAGATTGA 59.433 37.037 0.00 0.00 41.41 2.57
552 980 5.606749 AGCATGGAGGAAGGTAACATACATA 59.393 40.000 0.00 0.00 41.41 2.29
557 1045 3.118531 AGAGCATGGAGGAAGGTAACAT 58.881 45.455 0.00 0.00 41.41 2.71
587 1090 4.036262 TGCAAACAAGCAAGGTAGTGTAAG 59.964 41.667 0.00 0.00 42.46 2.34
603 1146 4.686191 AATCCTTTTGGTGATGCAAACA 57.314 36.364 0.00 0.00 41.38 2.83
604 1147 4.452114 GGAAATCCTTTTGGTGATGCAAAC 59.548 41.667 0.00 0.00 41.38 2.93
605 1148 4.102210 TGGAAATCCTTTTGGTGATGCAAA 59.898 37.500 0.00 0.00 41.38 3.68
606 1149 3.645212 TGGAAATCCTTTTGGTGATGCAA 59.355 39.130 0.00 0.00 41.38 4.08
646 1209 1.277557 GCAGAAAGGAGGCAGAAGAGA 59.722 52.381 0.00 0.00 0.00 3.10
648 1211 1.356124 AGCAGAAAGGAGGCAGAAGA 58.644 50.000 0.00 0.00 0.00 2.87
649 1212 2.197283 AAGCAGAAAGGAGGCAGAAG 57.803 50.000 0.00 0.00 0.00 2.85
650 1213 2.233271 CAAAGCAGAAAGGAGGCAGAA 58.767 47.619 0.00 0.00 0.00 3.02
658 1221 4.488879 GAGGCATAAACAAAGCAGAAAGG 58.511 43.478 0.00 0.00 0.00 3.11
693 1260 1.139058 GGGATACGGTGAAGACAGCAT 59.861 52.381 0.00 0.00 43.66 3.79
694 1261 0.535335 GGGATACGGTGAAGACAGCA 59.465 55.000 0.00 0.00 43.66 4.41
696 1263 1.409427 GGAGGGATACGGTGAAGACAG 59.591 57.143 0.00 0.00 37.60 3.51
699 1266 1.776662 CTGGAGGGATACGGTGAAGA 58.223 55.000 0.00 0.00 37.60 2.87
700 1267 0.105039 GCTGGAGGGATACGGTGAAG 59.895 60.000 0.00 0.00 37.60 3.02
704 1271 1.063114 AGTAAGCTGGAGGGATACGGT 60.063 52.381 0.00 0.00 37.60 4.83
707 1274 4.650131 AGTAACAGTAAGCTGGAGGGATAC 59.350 45.833 0.00 0.00 46.62 2.24
718 1293 2.966050 AGCAGAGCAGTAACAGTAAGC 58.034 47.619 0.00 0.00 0.00 3.09
735 1310 1.741145 CATGCATACAGCTGTGAAGCA 59.259 47.619 31.01 31.01 45.94 3.91
738 1313 2.118313 AGCATGCATACAGCTGTGAA 57.882 45.000 29.57 11.06 45.94 3.18
739 1314 3.867549 AGCATGCATACAGCTGTGA 57.132 47.368 29.57 13.48 45.94 3.58
743 1318 2.719739 AGAAACAGCATGCATACAGCT 58.280 42.857 21.98 0.57 45.94 4.24
744 1319 3.498927 AAGAAACAGCATGCATACAGC 57.501 42.857 21.98 0.00 42.53 4.40
745 1320 4.801891 ACAAAGAAACAGCATGCATACAG 58.198 39.130 21.98 6.52 42.53 2.74
746 1321 4.852134 ACAAAGAAACAGCATGCATACA 57.148 36.364 21.98 0.00 42.53 2.29
747 1322 5.613142 GCAAACAAAGAAACAGCATGCATAC 60.613 40.000 21.98 6.38 42.53 2.39
749 1324 3.249080 GCAAACAAAGAAACAGCATGCAT 59.751 39.130 21.98 4.26 42.53 3.96
750 1325 2.608546 GCAAACAAAGAAACAGCATGCA 59.391 40.909 21.98 0.00 42.53 3.96
751 1326 2.608546 TGCAAACAAAGAAACAGCATGC 59.391 40.909 10.51 10.51 42.53 4.06
753 1328 4.127566 AGTGCAAACAAAGAAACAGCAT 57.872 36.364 0.00 0.00 32.75 3.79
755 1330 5.339990 TCTTAGTGCAAACAAAGAAACAGC 58.660 37.500 0.00 0.00 0.00 4.40
760 1335 6.377146 AGGAGTTTCTTAGTGCAAACAAAGAA 59.623 34.615 8.95 8.95 36.45 2.52
761 1336 5.885912 AGGAGTTTCTTAGTGCAAACAAAGA 59.114 36.000 0.00 0.00 35.33 2.52
762 1337 6.136541 AGGAGTTTCTTAGTGCAAACAAAG 57.863 37.500 0.00 0.00 35.33 2.77
763 1338 6.826741 AGTAGGAGTTTCTTAGTGCAAACAAA 59.173 34.615 0.00 0.00 35.33 2.83
764 1339 6.354130 AGTAGGAGTTTCTTAGTGCAAACAA 58.646 36.000 0.00 0.00 35.33 2.83
765 1340 5.925509 AGTAGGAGTTTCTTAGTGCAAACA 58.074 37.500 0.00 0.00 35.33 2.83
766 1341 7.958053 TTAGTAGGAGTTTCTTAGTGCAAAC 57.042 36.000 0.00 0.00 33.42 2.93
769 1344 9.032624 AGTAATTAGTAGGAGTTTCTTAGTGCA 57.967 33.333 0.00 0.00 0.00 4.57
790 1365 8.202137 GGTGTGGTGATGTTATACAGTAGTAAT 58.798 37.037 0.00 0.00 33.13 1.89
791 1366 7.549839 GGTGTGGTGATGTTATACAGTAGTAA 58.450 38.462 0.00 0.00 33.13 2.24
792 1367 6.183360 CGGTGTGGTGATGTTATACAGTAGTA 60.183 42.308 0.00 0.00 34.10 1.82
793 1368 5.393787 CGGTGTGGTGATGTTATACAGTAGT 60.394 44.000 0.00 0.00 0.00 2.73
794 1369 5.041287 CGGTGTGGTGATGTTATACAGTAG 58.959 45.833 0.00 0.00 0.00 2.57
796 1371 3.857052 CGGTGTGGTGATGTTATACAGT 58.143 45.455 0.00 0.00 0.00 3.55
797 1372 2.607635 GCGGTGTGGTGATGTTATACAG 59.392 50.000 0.00 0.00 0.00 2.74
799 1374 1.937899 GGCGGTGTGGTGATGTTATAC 59.062 52.381 0.00 0.00 0.00 1.47
805 1404 1.374885 TAACGGCGGTGTGGTGATG 60.375 57.895 8.19 0.00 0.00 3.07
810 1409 0.672401 ATGAAGTAACGGCGGTGTGG 60.672 55.000 8.19 0.00 0.00 4.17
817 1416 4.453136 TGGTCTTGTAAATGAAGTAACGGC 59.547 41.667 0.00 0.00 0.00 5.68
818 1417 6.594159 AGATGGTCTTGTAAATGAAGTAACGG 59.406 38.462 0.00 0.00 0.00 4.44
821 1420 9.793259 AAAGAGATGGTCTTGTAAATGAAGTAA 57.207 29.630 0.00 0.00 45.44 2.24
832 1431 7.653311 GCACAAAAATAAAAGAGATGGTCTTGT 59.347 33.333 0.00 0.00 45.44 3.16
835 1434 7.530426 AGCACAAAAATAAAAGAGATGGTCT 57.470 32.000 0.00 0.00 36.94 3.85
844 1443 7.756722 CCAGATCCAGTAGCACAAAAATAAAAG 59.243 37.037 0.00 0.00 0.00 2.27
848 1447 5.880332 GTCCAGATCCAGTAGCACAAAAATA 59.120 40.000 0.00 0.00 0.00 1.40
890 1495 5.067273 TGCCGGAGTTTATTTTCTGAAAGA 58.933 37.500 5.05 0.00 44.68 2.52
903 1512 1.480137 CTCTCTCTGATGCCGGAGTTT 59.520 52.381 5.05 0.00 44.36 2.66
1027 1649 8.352752 TGTGCGAAATATAATAGTGTGAAGAG 57.647 34.615 0.00 0.00 0.00 2.85
1083 1705 1.540267 TTTTACCTTCCCATGGTGCG 58.460 50.000 11.73 0.00 38.42 5.34
1161 1824 6.658391 GCTCTCATAATAATGCAAGGAGGATT 59.342 38.462 0.00 0.00 41.52 3.01
1408 2233 6.488006 ACATATTTGCATCACAGGAAGGATAC 59.512 38.462 0.00 0.00 0.00 2.24
1462 2593 3.432252 GTCTGTAACCACATACACACAGC 59.568 47.826 0.00 0.00 33.23 4.40
1465 2596 3.432252 GCTGTCTGTAACCACATACACAC 59.568 47.826 0.00 0.00 36.98 3.82
1543 2675 6.037062 CCGACTGCACTCACATAATTTTCATA 59.963 38.462 0.00 0.00 0.00 2.15
1557 2689 1.005630 AGCTGAACCGACTGCACTC 60.006 57.895 0.00 0.00 37.23 3.51
1587 2724 6.342906 CCTTCATTAATTGTGCAATCCATGT 58.657 36.000 0.00 0.00 0.00 3.21
1796 2961 4.638865 TGCAATCATCTCAGAATGTCCAAG 59.361 41.667 0.00 0.00 37.40 3.61
2230 3489 1.689959 GCAACCTGCAAACGAATCAG 58.310 50.000 0.00 0.00 44.26 2.90
2379 3682 8.934023 TCATCCAACACCTAGAAATTTAGTTT 57.066 30.769 0.00 0.00 0.00 2.66
2380 3683 8.934023 TTCATCCAACACCTAGAAATTTAGTT 57.066 30.769 0.00 0.00 0.00 2.24
2392 3695 2.306805 TCATGAGCTTCATCCAACACCT 59.693 45.455 0.00 0.00 34.28 4.00
2396 3699 4.260170 ACTTCTCATGAGCTTCATCCAAC 58.740 43.478 18.36 0.00 34.28 3.77
2399 3702 5.275067 ACTACTTCTCATGAGCTTCATCC 57.725 43.478 18.36 0.00 34.28 3.51
2453 3756 9.844257 ACTAGTCCGATTAGTAACTACAGTATT 57.156 33.333 1.87 0.00 29.85 1.89
2454 3757 9.270640 CACTAGTCCGATTAGTAACTACAGTAT 57.729 37.037 3.45 0.00 30.48 2.12
2455 3758 8.260818 ACACTAGTCCGATTAGTAACTACAGTA 58.739 37.037 3.45 0.00 30.48 2.74
2456 3759 7.108847 ACACTAGTCCGATTAGTAACTACAGT 58.891 38.462 3.45 0.00 30.48 3.55
2490 3877 8.202137 TCCCAGTATTACTATTGAGCAAGTTAC 58.798 37.037 0.00 0.00 0.00 2.50
2564 3951 8.386264 CCATAGAGGTCAGGGTAAAATCATAAT 58.614 37.037 0.00 0.00 0.00 1.28
2629 4016 4.139786 CAGTTATATTGGTCCAGCAGCAT 58.860 43.478 0.00 0.00 30.77 3.79
2630 4017 3.544684 CAGTTATATTGGTCCAGCAGCA 58.455 45.455 0.00 0.00 0.00 4.41
2631 4018 2.291741 GCAGTTATATTGGTCCAGCAGC 59.708 50.000 0.00 0.00 0.00 5.25
2632 4019 3.813443 AGCAGTTATATTGGTCCAGCAG 58.187 45.455 0.00 0.00 0.00 4.24
2633 4020 3.931907 AGCAGTTATATTGGTCCAGCA 57.068 42.857 0.00 0.00 0.00 4.41
2634 4021 4.962155 ACTAGCAGTTATATTGGTCCAGC 58.038 43.478 0.00 0.00 0.00 4.85
2635 4022 6.412362 AGACTAGCAGTTATATTGGTCCAG 57.588 41.667 0.00 0.00 0.00 3.86
2636 4023 6.808321 AAGACTAGCAGTTATATTGGTCCA 57.192 37.500 0.00 0.00 0.00 4.02
2637 4024 7.012421 CCAAAAGACTAGCAGTTATATTGGTCC 59.988 40.741 0.00 0.00 31.31 4.46
2638 4025 7.012421 CCCAAAAGACTAGCAGTTATATTGGTC 59.988 40.741 0.00 0.00 33.45 4.02
2639 4026 6.828785 CCCAAAAGACTAGCAGTTATATTGGT 59.171 38.462 0.00 0.00 33.45 3.67
2640 4027 6.238759 GCCCAAAAGACTAGCAGTTATATTGG 60.239 42.308 0.00 0.00 34.73 3.16
2641 4028 6.318648 TGCCCAAAAGACTAGCAGTTATATTG 59.681 38.462 0.00 0.00 0.00 1.90
2642 4029 6.423182 TGCCCAAAAGACTAGCAGTTATATT 58.577 36.000 0.00 0.00 0.00 1.28
2643 4030 6.001449 TGCCCAAAAGACTAGCAGTTATAT 57.999 37.500 0.00 0.00 0.00 0.86
2644 4031 5.429681 TGCCCAAAAGACTAGCAGTTATA 57.570 39.130 0.00 0.00 0.00 0.98
3015 4600 2.937873 GCCAAGTTGCGGTATTCCACTA 60.938 50.000 0.00 0.00 0.00 2.74
3112 5016 5.567138 ACACCAACACAAGAAAGAAAGAG 57.433 39.130 0.00 0.00 0.00 2.85
3262 5222 7.256083 GGGGAAAAGGGATCAGATCAATAAATG 60.256 40.741 12.66 0.00 0.00 2.32
3263 5223 6.784473 GGGGAAAAGGGATCAGATCAATAAAT 59.216 38.462 12.66 0.00 0.00 1.40
3264 5224 6.136155 GGGGAAAAGGGATCAGATCAATAAA 58.864 40.000 12.66 0.00 0.00 1.40
3266 5226 4.106341 GGGGGAAAAGGGATCAGATCAATA 59.894 45.833 12.66 0.00 0.00 1.90
3267 5227 3.116977 GGGGGAAAAGGGATCAGATCAAT 60.117 47.826 12.66 0.00 0.00 2.57
3268 5228 2.244769 GGGGGAAAAGGGATCAGATCAA 59.755 50.000 12.66 0.00 0.00 2.57
3269 5229 1.852965 GGGGGAAAAGGGATCAGATCA 59.147 52.381 12.66 0.00 0.00 2.92
3270 5230 2.666272 GGGGGAAAAGGGATCAGATC 57.334 55.000 1.18 1.18 0.00 2.75
3308 5271 8.850454 TGCAAAAGTGAGTGTAAACTTAAATC 57.150 30.769 0.00 0.00 35.60 2.17
3309 5272 9.083080 GTTGCAAAAGTGAGTGTAAACTTAAAT 57.917 29.630 0.00 0.00 35.60 1.40
3335 5298 3.318839 TGTGGGAAAAATCTCTGCACAAG 59.681 43.478 0.00 0.00 0.00 3.16
3432 5395 9.799106 ATTAAAGGACATAATACCATGGAGAAG 57.201 33.333 21.47 5.46 0.00 2.85
3587 5624 7.413446 TCTTGAGGGAAGGATTAACAATGATT 58.587 34.615 0.00 0.00 31.85 2.57
3589 5626 6.387192 TCTTGAGGGAAGGATTAACAATGA 57.613 37.500 0.00 0.00 31.85 2.57
3590 5627 5.591877 CCTCTTGAGGGAAGGATTAACAATG 59.408 44.000 8.74 0.00 31.85 2.82
3592 5629 4.849810 TCCTCTTGAGGGAAGGATTAACAA 59.150 41.667 15.81 0.00 31.85 2.83
3594 5631 5.029807 CTCCTCTTGAGGGAAGGATTAAC 57.970 47.826 15.81 0.00 37.45 2.01
3606 5643 3.513119 TCATGAACAGTCCTCCTCTTGAG 59.487 47.826 0.00 0.00 41.07 3.02
3607 5644 3.510459 TCATGAACAGTCCTCCTCTTGA 58.490 45.455 0.00 0.00 0.00 3.02
3608 5645 3.969287 TCATGAACAGTCCTCCTCTTG 57.031 47.619 0.00 0.00 0.00 3.02
3609 5646 4.533707 TCATTCATGAACAGTCCTCCTCTT 59.466 41.667 11.07 0.00 33.08 2.85
3611 5648 4.478206 TCATTCATGAACAGTCCTCCTC 57.522 45.455 11.07 0.00 33.08 3.71
3612 5649 4.472470 TCATCATTCATGAACAGTCCTCCT 59.528 41.667 11.07 0.00 38.68 3.69
3613 5650 4.774124 TCATCATTCATGAACAGTCCTCC 58.226 43.478 11.07 0.00 38.68 4.30
3614 5651 5.426504 ACTCATCATTCATGAACAGTCCTC 58.573 41.667 11.07 0.00 41.25 3.71
3617 5766 5.105063 TCGACTCATCATTCATGAACAGTC 58.895 41.667 11.07 14.57 41.25 3.51
3634 5783 3.129638 AGGTAAGCTGTCTGATTCGACTC 59.870 47.826 0.00 0.00 35.00 3.36
3670 5819 0.991920 TGACCTGAATCAAGACCCCC 59.008 55.000 0.00 0.00 0.00 5.40
3671 5820 3.019564 CAATGACCTGAATCAAGACCCC 58.980 50.000 0.00 0.00 30.82 4.95
3672 5821 3.019564 CCAATGACCTGAATCAAGACCC 58.980 50.000 0.00 0.00 30.82 4.46
3828 6000 9.689976 CAACAGAGGATATAAGACTATCAGTTG 57.310 37.037 0.00 0.00 31.01 3.16
3850 6022 6.878389 GGAAATCCCTGCAAAAATATTCAACA 59.122 34.615 0.00 0.00 0.00 3.33
3851 6023 6.878389 TGGAAATCCCTGCAAAAATATTCAAC 59.122 34.615 0.00 0.00 35.38 3.18
3859 6031 3.708631 TGTTCTGGAAATCCCTGCAAAAA 59.291 39.130 0.00 0.00 34.22 1.94
4006 6178 1.755380 AGAATCCTTCTAACGGACCGG 59.245 52.381 20.00 0.00 38.49 5.28
4007 6179 4.037684 ACATAGAATCCTTCTAACGGACCG 59.962 45.833 13.61 13.61 44.75 4.79
4008 6180 5.532664 ACATAGAATCCTTCTAACGGACC 57.467 43.478 1.06 0.00 44.75 4.46
4009 6181 6.476053 GTGAACATAGAATCCTTCTAACGGAC 59.524 42.308 1.06 0.00 44.75 4.79
4010 6182 6.153851 TGTGAACATAGAATCCTTCTAACGGA 59.846 38.462 1.06 0.00 44.75 4.69
4039 6211 5.388654 ACAAAGATTGTGAGACCAATTCCT 58.611 37.500 0.00 0.00 43.48 3.36
4071 6243 8.372459 AGTACCAGTCAACATAACATCAGTTTA 58.628 33.333 0.00 0.00 39.15 2.01
4104 6277 8.830201 ATTCTTCATAGATGACACTGCTATTC 57.170 34.615 0.00 0.00 36.36 1.75
4123 6296 9.202273 GGTAGCTGCAGCATATATATATTCTTC 57.798 37.037 38.24 12.02 45.16 2.87
4124 6297 8.708378 TGGTAGCTGCAGCATATATATATTCTT 58.292 33.333 38.24 16.23 45.16 2.52
4126 6299 8.768955 GTTGGTAGCTGCAGCATATATATATTC 58.231 37.037 38.24 16.62 45.16 1.75
4193 6478 4.589216 TGAGGAATTTCACAAGCAAAGG 57.411 40.909 0.00 0.00 0.00 3.11
4194 6479 6.044682 AGTTTGAGGAATTTCACAAGCAAAG 58.955 36.000 12.07 0.00 0.00 2.77
4238 6523 5.049405 GTCTGAAAACTCCAACACGAATGAT 60.049 40.000 0.00 0.00 0.00 2.45
4270 6579 6.574350 AGAGATACTGGAAATGGAAAGTACG 58.426 40.000 0.00 0.00 0.00 3.67
4271 6580 7.556844 TGAGAGATACTGGAAATGGAAAGTAC 58.443 38.462 0.00 0.00 0.00 2.73
4335 6658 2.291209 AACCTGAACATGCCATGTGA 57.709 45.000 11.79 0.25 44.07 3.58
4349 6672 1.280998 ACGGGGTTTCCAGATAACCTG 59.719 52.381 0.00 0.00 43.66 4.00
4376 6699 2.341846 TGTTCAGTTGGTTCTGGGAC 57.658 50.000 0.00 0.00 36.25 4.46
4844 7743 6.174049 GGAGTGGAGATAAAATAGCATACCC 58.826 44.000 0.00 0.00 0.00 3.69
4852 7778 3.964688 TGGAGCGGAGTGGAGATAAAATA 59.035 43.478 0.00 0.00 0.00 1.40
4853 7779 2.771943 TGGAGCGGAGTGGAGATAAAAT 59.228 45.455 0.00 0.00 0.00 1.82
4854 7780 2.184533 TGGAGCGGAGTGGAGATAAAA 58.815 47.619 0.00 0.00 0.00 1.52
4862 7796 0.249073 CGAAGTATGGAGCGGAGTGG 60.249 60.000 0.00 0.00 0.00 4.00
4869 7803 2.474032 GCAACGAAACGAAGTATGGAGC 60.474 50.000 0.00 0.00 45.00 4.70
4918 8697 6.980397 GGGGAAATGTTGAATAATTGCTACAG 59.020 38.462 0.00 0.00 0.00 2.74
4938 8717 4.158786 TGAAAAGAAAGCATCATGGGGAA 58.841 39.130 0.00 0.00 0.00 3.97
4940 8719 3.512724 ACTGAAAAGAAAGCATCATGGGG 59.487 43.478 0.00 0.00 0.00 4.96
4941 8720 4.796038 ACTGAAAAGAAAGCATCATGGG 57.204 40.909 0.00 0.00 0.00 4.00
4943 8722 5.798934 GCAGTACTGAAAAGAAAGCATCATG 59.201 40.000 27.08 0.00 0.00 3.07
4944 8723 5.105997 GGCAGTACTGAAAAGAAAGCATCAT 60.106 40.000 27.08 0.00 0.00 2.45
4946 8725 4.670221 CGGCAGTACTGAAAAGAAAGCATC 60.670 45.833 27.08 3.50 0.00 3.91
4970 8757 5.048507 ACTGAGACTTTTCTTTGTACGACC 58.951 41.667 0.00 0.00 29.47 4.79
5113 8900 7.962003 AGAAGGTAGAAATGAGGGGCTTATATA 59.038 37.037 0.00 0.00 0.00 0.86
5114 8901 6.795000 AGAAGGTAGAAATGAGGGGCTTATAT 59.205 38.462 0.00 0.00 0.00 0.86
5115 8902 6.151049 AGAAGGTAGAAATGAGGGGCTTATA 58.849 40.000 0.00 0.00 0.00 0.98
5116 8903 4.978388 AGAAGGTAGAAATGAGGGGCTTAT 59.022 41.667 0.00 0.00 0.00 1.73
5227 9059 7.283127 TCAGAAGCAAAAGAAGTGTGTTCTAAT 59.717 33.333 0.00 0.00 0.00 1.73
5322 9238 8.100791 AGCCATAACTATTTCTTCACAACTGTA 58.899 33.333 0.00 0.00 0.00 2.74
5325 9241 8.100791 TGTAGCCATAACTATTTCTTCACAACT 58.899 33.333 0.00 0.00 0.00 3.16
5333 9255 6.924060 GTCATCGTGTAGCCATAACTATTTCT 59.076 38.462 0.00 0.00 0.00 2.52
5339 9261 4.465632 TTGTCATCGTGTAGCCATAACT 57.534 40.909 0.00 0.00 0.00 2.24
6085 10894 2.163818 TGGCTACAAACTTGGAGTCG 57.836 50.000 1.97 0.00 46.78 4.18
6252 11343 2.950781 TGCAGCTAGCTAGTAGATGGT 58.049 47.619 18.86 0.00 44.14 3.55
6260 11358 6.649973 AGTCAATCAATAATGCAGCTAGCTAG 59.350 38.462 18.86 16.84 45.94 3.42
6261 11359 6.426025 CAGTCAATCAATAATGCAGCTAGCTA 59.574 38.462 18.86 2.62 45.94 3.32
6262 11360 5.238868 CAGTCAATCAATAATGCAGCTAGCT 59.761 40.000 12.68 12.68 45.94 3.32
6263 11361 5.237996 TCAGTCAATCAATAATGCAGCTAGC 59.762 40.000 6.62 6.62 45.96 3.42
6284 11464 5.748152 CCAATTGTACACAAAACCAACTCAG 59.252 40.000 4.43 0.00 39.55 3.35
6341 11521 0.464036 TCTTGTCCGTGAGCTTGTGT 59.536 50.000 0.00 0.00 0.00 3.72
6350 11530 2.050351 ACGTCGCTCTTGTCCGTG 60.050 61.111 0.00 0.00 0.00 4.94
6435 11615 2.153401 CCACCACCTCCCTCACCAA 61.153 63.158 0.00 0.00 0.00 3.67
6814 12144 4.404073 AGGCTCCACACAAACAAACAATTA 59.596 37.500 0.00 0.00 0.00 1.40
6849 12179 4.295201 ACACCAGCAACCATATACTCCTA 58.705 43.478 0.00 0.00 0.00 2.94
6850 12180 3.115390 ACACCAGCAACCATATACTCCT 58.885 45.455 0.00 0.00 0.00 3.69
6851 12181 3.560636 ACACCAGCAACCATATACTCC 57.439 47.619 0.00 0.00 0.00 3.85
6852 12182 4.997395 CCATACACCAGCAACCATATACTC 59.003 45.833 0.00 0.00 0.00 2.59
6853 12183 4.658435 TCCATACACCAGCAACCATATACT 59.342 41.667 0.00 0.00 0.00 2.12
6902 12233 5.159209 CAGCAGAGCACAATTCCTAAAAAG 58.841 41.667 0.00 0.00 0.00 2.27
6935 12269 7.160633 ACAATCACAAATTTCTAACGCAAAC 57.839 32.000 0.00 0.00 0.00 2.93
6939 12273 6.984740 TGAACAATCACAAATTTCTAACGC 57.015 33.333 0.00 0.00 0.00 4.84
6969 12304 4.515191 TGACTAGCAGCGAAAACAGAAATT 59.485 37.500 0.00 0.00 0.00 1.82
6974 12309 1.728971 CCTGACTAGCAGCGAAAACAG 59.271 52.381 8.23 0.00 43.50 3.16
7035 12375 7.826260 AGAAACGTCAACAATCACAAATTTT 57.174 28.000 0.00 0.00 0.00 1.82
7053 12393 6.546395 CAAATCTCACAAGGGAATAGAAACG 58.454 40.000 0.00 0.00 0.00 3.60
7071 12413 3.545703 CCGGTCCATAAGAAGCAAATCT 58.454 45.455 0.00 0.00 0.00 2.40
7072 12414 2.033424 GCCGGTCCATAAGAAGCAAATC 59.967 50.000 1.90 0.00 0.00 2.17
7091 12433 2.690778 GCACTTGGTCGGTCATGCC 61.691 63.158 0.00 0.00 0.00 4.40
7092 12434 1.308069 ATGCACTTGGTCGGTCATGC 61.308 55.000 0.00 0.00 0.00 4.06
7093 12435 0.448990 CATGCACTTGGTCGGTCATG 59.551 55.000 0.00 0.00 0.00 3.07
7094 12436 1.308069 GCATGCACTTGGTCGGTCAT 61.308 55.000 14.21 0.00 0.00 3.06
7096 12438 1.308069 ATGCATGCACTTGGTCGGTC 61.308 55.000 25.37 0.00 0.00 4.79
7097 12439 0.895100 AATGCATGCACTTGGTCGGT 60.895 50.000 25.37 0.00 0.00 4.69
7099 12441 0.457166 CCAATGCATGCACTTGGTCG 60.457 55.000 32.22 19.15 33.77 4.79
7100 12442 0.108520 CCCAATGCATGCACTTGGTC 60.109 55.000 34.62 8.00 35.16 4.02
7101 12443 0.542467 TCCCAATGCATGCACTTGGT 60.542 50.000 34.62 18.59 35.16 3.67
7102 12444 0.609151 TTCCCAATGCATGCACTTGG 59.391 50.000 32.93 32.93 35.91 3.61
7103 12445 1.404986 CCTTCCCAATGCATGCACTTG 60.405 52.381 25.37 24.61 0.00 3.16
7110 12457 5.484998 AGTTTGTTATTCCTTCCCAATGCAT 59.515 36.000 0.00 0.00 0.00 3.96
7135 12482 0.674895 AGGGCAATGTGAGCTTCGTC 60.675 55.000 0.00 0.00 0.00 4.20
7136 12483 0.957395 CAGGGCAATGTGAGCTTCGT 60.957 55.000 0.00 0.00 0.00 3.85
7138 12485 2.113860 TACAGGGCAATGTGAGCTTC 57.886 50.000 4.98 0.00 34.56 3.86
7139 12486 2.224867 ACTTACAGGGCAATGTGAGCTT 60.225 45.455 11.98 0.00 39.68 3.74
7187 12771 9.337091 ACAAAATTCGAAATAGGAATAAACACG 57.663 29.630 0.00 0.00 33.16 4.49
7256 15292 9.929180 GGGATTCCCTAATATTTTAGAAAATGC 57.071 33.333 14.98 8.17 41.34 3.56
7269 15305 6.428295 ACGAACAATTTGGGATTCCCTAATA 58.572 36.000 25.53 6.02 45.57 0.98
7271 15307 4.668636 ACGAACAATTTGGGATTCCCTAA 58.331 39.130 22.38 20.62 45.70 2.69
7273 15309 3.169512 ACGAACAATTTGGGATTCCCT 57.830 42.857 22.38 0.00 45.70 4.20
7274 15310 3.953712 AACGAACAATTTGGGATTCCC 57.046 42.857 15.40 15.40 45.71 3.97
7277 15313 4.946478 TGGAAACGAACAATTTGGGATT 57.054 36.364 0.78 0.00 0.00 3.01
7279 15315 3.954904 TCTTGGAAACGAACAATTTGGGA 59.045 39.130 0.78 0.00 0.00 4.37
7280 15316 4.314740 TCTTGGAAACGAACAATTTGGG 57.685 40.909 0.78 0.00 0.00 4.12
7281 15317 8.532977 AATATTCTTGGAAACGAACAATTTGG 57.467 30.769 0.78 0.00 0.00 3.28
7413 15455 1.588674 ACAAATGCGTCCTTCGAACA 58.411 45.000 0.00 0.00 42.86 3.18
7417 15459 0.787787 TCGAACAAATGCGTCCTTCG 59.212 50.000 6.34 6.34 43.12 3.79
7427 15469 2.699954 CTGGTAGGCAGTCGAACAAAT 58.300 47.619 0.00 0.00 0.00 2.32
7437 15479 2.434884 CCACGTGCTGGTAGGCAG 60.435 66.667 10.91 0.00 43.25 4.85
7471 15513 4.441087 GGTTCGCTGAAAAATTGAACTCAC 59.559 41.667 3.76 0.00 39.05 3.51
7483 15525 1.745232 AGTGTGTTGGTTCGCTGAAA 58.255 45.000 0.00 0.00 0.00 2.69
7493 15759 4.202202 TGGGCAGAAAAATAAGTGTGTTGG 60.202 41.667 0.00 0.00 0.00 3.77
7496 15762 4.561326 GCATGGGCAGAAAAATAAGTGTGT 60.561 41.667 0.00 0.00 40.72 3.72
7498 15764 4.192429 GCATGGGCAGAAAAATAAGTGT 57.808 40.909 0.00 0.00 40.72 3.55
7564 15831 0.453950 CTTGCTCGCATGTGTGAAGC 60.454 55.000 12.31 11.39 33.75 3.86
7569 15836 0.952497 CCAGTCTTGCTCGCATGTGT 60.952 55.000 6.09 0.00 0.00 3.72
7574 15841 4.704833 GGCCCAGTCTTGCTCGCA 62.705 66.667 0.00 0.00 0.00 5.10
7576 15843 2.435586 CTGGCCCAGTCTTGCTCG 60.436 66.667 1.39 0.00 0.00 5.03
7579 15846 1.673665 CAGTCTGGCCCAGTCTTGC 60.674 63.158 11.27 0.00 28.34 4.01
7652 15924 6.709846 CCAAAAATAAGAACTGGGAATGCAAA 59.290 34.615 0.00 0.00 0.00 3.68
7654 15926 5.541868 TCCAAAAATAAGAACTGGGAATGCA 59.458 36.000 0.00 0.00 0.00 3.96
7655 15927 6.036577 TCCAAAAATAAGAACTGGGAATGC 57.963 37.500 0.00 0.00 0.00 3.56
7656 15928 9.506018 AATTTCCAAAAATAAGAACTGGGAATG 57.494 29.630 0.00 0.00 35.85 2.67
7657 15929 9.725019 GAATTTCCAAAAATAAGAACTGGGAAT 57.275 29.630 0.00 0.00 37.02 3.01
7658 15930 8.709308 TGAATTTCCAAAAATAAGAACTGGGAA 58.291 29.630 0.00 0.00 33.93 3.97
7659 15931 8.256356 TGAATTTCCAAAAATAAGAACTGGGA 57.744 30.769 0.00 0.00 33.93 4.37
7660 15932 8.900983 TTGAATTTCCAAAAATAAGAACTGGG 57.099 30.769 0.00 0.00 33.93 4.45
7774 16048 8.033038 CGAGGGACAATATATTTAAAGATCCGA 58.967 37.037 0.00 0.00 0.00 4.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.