Multiple sequence alignment - TraesCS3D01G542000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G542000 chr3D 100.000 2522 0 0 1 2522 613075055 613077576 0.000000e+00 4658.0
1 TraesCS3D01G542000 chr3D 85.533 394 30 14 47 415 143138779 143138388 1.090000e-103 387.0
2 TraesCS3D01G542000 chr3D 91.954 174 13 1 1753 1925 184589405 184589578 2.510000e-60 243.0
3 TraesCS3D01G542000 chr3D 97.143 70 2 0 492 561 69457088 69457157 4.410000e-23 119.0
4 TraesCS3D01G542000 chr3A 94.146 1230 50 5 559 1774 747727289 747728510 0.000000e+00 1853.0
5 TraesCS3D01G542000 chr3A 91.516 554 29 5 1898 2434 747728543 747729095 0.000000e+00 747.0
6 TraesCS3D01G542000 chr3A 83.682 478 64 9 785 1256 747755618 747756087 2.980000e-119 438.0
7 TraesCS3D01G542000 chr3A 87.317 205 19 6 1722 1925 582946233 582946431 7.020000e-56 228.0
8 TraesCS3D01G542000 chr3A 92.208 77 6 0 415 491 747727225 747727301 2.650000e-20 110.0
9 TraesCS3D01G542000 chr3A 95.745 47 2 0 1 47 747727188 747727234 2.690000e-10 76.8
10 TraesCS3D01G542000 chr3B 95.328 1113 47 3 638 1749 825971486 825970378 0.000000e+00 1762.0
11 TraesCS3D01G542000 chr3B 91.061 179 14 2 1746 1923 571752517 571752694 9.010000e-60 241.0
12 TraesCS3D01G542000 chr3B 95.105 143 6 1 1917 2059 825970371 825970230 9.080000e-55 224.0
13 TraesCS3D01G542000 chr3B 94.667 75 2 2 487 561 697141371 697141443 5.700000e-22 115.0
14 TraesCS3D01G542000 chr3B 90.909 66 6 0 2055 2120 489363218 489363283 3.460000e-14 89.8
15 TraesCS3D01G542000 chr3B 97.872 47 1 0 1 47 825971593 825971547 5.780000e-12 82.4
16 TraesCS3D01G542000 chr3B 95.833 48 2 0 415 462 825971556 825971509 7.480000e-11 78.7
17 TraesCS3D01G542000 chr3B 100.000 28 0 0 2057 2084 113916619 113916592 5.000000e-03 52.8
18 TraesCS3D01G542000 chr4D 86.889 389 27 14 47 414 452805840 452806225 5.020000e-112 414.0
19 TraesCS3D01G542000 chr4D 83.019 159 22 4 1512 1670 40579941 40580094 3.380000e-29 139.0
20 TraesCS3D01G542000 chr4D 97.143 70 2 0 492 561 379363764 379363833 4.410000e-23 119.0
21 TraesCS3D01G542000 chr4D 98.485 66 1 0 493 558 11579933 11579998 1.590000e-22 117.0
22 TraesCS3D01G542000 chr1D 86.432 398 22 13 45 414 21845264 21844871 8.400000e-110 407.0
23 TraesCS3D01G542000 chr1D 85.507 414 23 17 40 421 326967563 326967971 5.060000e-107 398.0
24 TraesCS3D01G542000 chr1D 88.889 189 20 1 1730 1918 330535154 330534967 5.430000e-57 231.0
25 TraesCS3D01G542000 chr7D 85.823 395 25 13 50 414 441862620 441862227 8.460000e-105 390.0
26 TraesCS3D01G542000 chr7D 85.427 398 26 14 47 414 151776217 151776612 3.940000e-103 385.0
27 TraesCS3D01G542000 chr7D 85.503 338 24 11 101 415 18920370 18920705 1.870000e-86 329.0
28 TraesCS3D01G542000 chr7D 92.442 172 13 0 1754 1925 482123462 482123291 1.940000e-61 246.0
29 TraesCS3D01G542000 chr7D 90.000 60 4 2 1515 1574 326706367 326706310 2.690000e-10 76.8
30 TraesCS3D01G542000 chr5B 85.751 386 36 12 45 414 394015875 394016257 8.460000e-105 390.0
31 TraesCS3D01G542000 chr5B 82.864 391 34 14 47 407 493285511 493285898 1.130000e-83 320.0
32 TraesCS3D01G542000 chr5B 89.730 185 19 0 1754 1938 551541110 551541294 1.170000e-58 237.0
33 TraesCS3D01G542000 chr5B 88.889 81 9 0 2057 2137 440178462 440178382 1.600000e-17 100.0
34 TraesCS3D01G542000 chr5B 80.412 97 15 3 1931 2025 21742096 21742002 1.250000e-08 71.3
35 TraesCS3D01G542000 chr6B 85.037 401 26 16 46 414 444307469 444307867 6.590000e-101 377.0
36 TraesCS3D01G542000 chr6B 83.571 280 35 11 46 320 701891490 701891217 4.160000e-63 252.0
37 TraesCS3D01G542000 chr6B 82.463 268 30 14 142 401 701891217 701891475 4.220000e-53 219.0
38 TraesCS3D01G542000 chr6B 86.000 100 11 3 2056 2155 608037952 608038048 1.230000e-18 104.0
39 TraesCS3D01G542000 chr6B 82.927 82 11 2 2057 2138 75526738 75526816 1.250000e-08 71.3
40 TraesCS3D01G542000 chr6A 84.733 393 23 17 47 407 79122441 79122828 2.390000e-95 359.0
41 TraesCS3D01G542000 chrUn 84.422 398 24 17 41 407 230804639 230804249 8.580000e-95 357.0
42 TraesCS3D01G542000 chrUn 84.422 398 24 17 41 407 410917315 410916925 8.580000e-95 357.0
43 TraesCS3D01G542000 chr2B 84.456 386 30 15 49 407 66552976 66552594 1.110000e-93 353.0
44 TraesCS3D01G542000 chr2B 95.946 74 2 1 489 561 473357252 473357179 4.410000e-23 119.0
45 TraesCS3D01G542000 chr1B 83.846 390 33 14 47 407 4475710 4475322 6.680000e-91 344.0
46 TraesCS3D01G542000 chr1B 100.000 28 0 0 2057 2084 545464070 545464097 5.000000e-03 52.8
47 TraesCS3D01G542000 chr4B 83.249 394 28 18 47 407 601189024 601188636 6.730000e-86 327.0
48 TraesCS3D01G542000 chr4A 92.000 175 12 2 1752 1925 1072343 1072170 6.970000e-61 244.0
49 TraesCS3D01G542000 chr7B 90.710 183 16 1 1743 1925 672169951 672170132 2.510000e-60 243.0
50 TraesCS3D01G542000 chr7B 95.775 71 3 0 491 561 689879842 689879772 5.700000e-22 115.0
51 TraesCS3D01G542000 chr5D 90.960 177 16 0 1749 1925 181626281 181626105 3.240000e-59 239.0
52 TraesCS3D01G542000 chr5D 81.752 137 21 3 2057 2192 375733710 375733577 7.370000e-21 111.0
53 TraesCS3D01G542000 chr1A 85.326 184 24 3 1515 1698 593391814 593391634 1.190000e-43 187.0
54 TraesCS3D01G542000 chr1A 97.143 70 2 0 492 561 369394114 369394045 4.410000e-23 119.0
55 TraesCS3D01G542000 chr2D 94.737 76 4 0 483 558 564602358 564602433 4.410000e-23 119.0
56 TraesCS3D01G542000 chr2A 97.143 70 2 0 492 561 410698268 410698199 4.410000e-23 119.0
57 TraesCS3D01G542000 chr5A 78.261 138 25 4 2057 2192 476844955 476844821 1.610000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G542000 chr3D 613075055 613077576 2521 False 4658.000 4658 100.00000 1 2522 1 chr3D.!!$F3 2521
1 TraesCS3D01G542000 chr3A 747727188 747729095 1907 False 696.700 1853 93.40375 1 2434 4 chr3A.!!$F3 2433
2 TraesCS3D01G542000 chr3B 825970230 825971593 1363 True 536.775 1762 96.03450 1 2059 4 chr3B.!!$R2 2058

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
278 279 0.107654 GCCACGCCTTCTAGGAATGT 60.108 55.0 0.00 0.0 37.67 2.71 F
499 500 0.114560 AGTGGAGAAGAGGAACCGGA 59.885 55.0 9.46 0.0 0.00 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1102 1118 0.108615 CAGTCGGGATGGTCACTCAC 60.109 60.0 0.0 0.0 0.00 3.51 R
2441 2474 0.034337 GTTCTCCGCCTGTGGTTACA 59.966 55.0 0.0 0.0 35.08 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 1.772182 GCCGTCTGTATTGATCGAGG 58.228 55.000 0.00 0.00 0.00 4.63
38 39 1.772182 CCGTCTGTATTGATCGAGGC 58.228 55.000 0.00 0.00 0.00 4.70
39 40 1.338337 CCGTCTGTATTGATCGAGGCT 59.662 52.381 0.00 0.00 0.00 4.58
40 41 2.552743 CCGTCTGTATTGATCGAGGCTA 59.447 50.000 0.00 0.00 0.00 3.93
41 42 3.004419 CCGTCTGTATTGATCGAGGCTAA 59.996 47.826 0.00 0.00 0.00 3.09
42 43 4.499188 CCGTCTGTATTGATCGAGGCTAAA 60.499 45.833 0.00 0.00 0.00 1.85
43 44 5.223382 CGTCTGTATTGATCGAGGCTAAAT 58.777 41.667 0.00 0.00 0.00 1.40
44 45 6.379386 CGTCTGTATTGATCGAGGCTAAATA 58.621 40.000 0.00 0.00 0.00 1.40
45 46 6.524933 CGTCTGTATTGATCGAGGCTAAATAG 59.475 42.308 0.00 0.00 0.00 1.73
58 59 4.357018 GCTAAATAGCGAAAGTGCCTTT 57.643 40.909 0.00 0.46 39.82 3.11
59 60 4.343609 GCTAAATAGCGAAAGTGCCTTTC 58.656 43.478 14.28 14.28 44.29 2.62
60 61 4.095036 GCTAAATAGCGAAAGTGCCTTTCT 59.905 41.667 19.11 9.10 45.19 2.52
61 62 4.425577 AAATAGCGAAAGTGCCTTTCTG 57.574 40.909 19.11 14.97 45.19 3.02
62 63 1.156736 TAGCGAAAGTGCCTTTCTGC 58.843 50.000 21.70 21.70 45.19 4.26
63 64 0.536006 AGCGAAAGTGCCTTTCTGCT 60.536 50.000 23.78 23.78 45.19 4.24
64 65 0.110010 GCGAAAGTGCCTTTCTGCTC 60.110 55.000 21.80 10.50 45.19 4.26
65 66 0.519077 CGAAAGTGCCTTTCTGCTCC 59.481 55.000 19.11 1.19 45.19 4.70
66 67 0.884514 GAAAGTGCCTTTCTGCTCCC 59.115 55.000 16.08 0.00 44.33 4.30
67 68 0.890996 AAAGTGCCTTTCTGCTCCCG 60.891 55.000 0.00 0.00 0.00 5.14
68 69 1.768684 AAGTGCCTTTCTGCTCCCGA 61.769 55.000 0.00 0.00 0.00 5.14
69 70 1.743252 GTGCCTTTCTGCTCCCGAG 60.743 63.158 0.00 0.00 0.00 4.63
90 91 2.416747 CTCAAATGAGCTCGGTGAACA 58.583 47.619 9.64 0.00 35.13 3.18
91 92 2.414481 CTCAAATGAGCTCGGTGAACAG 59.586 50.000 9.64 0.00 35.13 3.16
92 93 2.146342 CAAATGAGCTCGGTGAACAGT 58.854 47.619 9.64 0.00 0.00 3.55
93 94 3.006430 TCAAATGAGCTCGGTGAACAGTA 59.994 43.478 9.64 0.00 0.00 2.74
94 95 3.678056 AATGAGCTCGGTGAACAGTAA 57.322 42.857 9.64 0.00 0.00 2.24
95 96 3.678056 ATGAGCTCGGTGAACAGTAAA 57.322 42.857 9.64 0.00 0.00 2.01
96 97 3.462483 TGAGCTCGGTGAACAGTAAAA 57.538 42.857 9.64 0.00 0.00 1.52
97 98 4.002906 TGAGCTCGGTGAACAGTAAAAT 57.997 40.909 9.64 0.00 0.00 1.82
98 99 3.994392 TGAGCTCGGTGAACAGTAAAATC 59.006 43.478 9.64 0.00 0.00 2.17
99 100 2.993899 AGCTCGGTGAACAGTAAAATCG 59.006 45.455 0.00 0.00 0.00 3.34
100 101 2.991190 GCTCGGTGAACAGTAAAATCGA 59.009 45.455 0.00 0.00 0.00 3.59
101 102 3.430895 GCTCGGTGAACAGTAAAATCGAA 59.569 43.478 0.00 0.00 0.00 3.71
102 103 4.084223 GCTCGGTGAACAGTAAAATCGAAA 60.084 41.667 0.00 0.00 0.00 3.46
103 104 5.559417 GCTCGGTGAACAGTAAAATCGAAAA 60.559 40.000 0.00 0.00 0.00 2.29
104 105 6.360844 TCGGTGAACAGTAAAATCGAAAAA 57.639 33.333 0.00 0.00 0.00 1.94
145 146 4.826274 TTTTTGGGGTGAAACATTGACA 57.174 36.364 0.00 0.00 39.98 3.58
146 147 4.826274 TTTTGGGGTGAAACATTGACAA 57.174 36.364 0.00 0.00 39.98 3.18
147 148 4.826274 TTTGGGGTGAAACATTGACAAA 57.174 36.364 0.00 0.00 39.98 2.83
148 149 4.826274 TTGGGGTGAAACATTGACAAAA 57.174 36.364 0.00 0.00 39.98 2.44
149 150 4.399004 TGGGGTGAAACATTGACAAAAG 57.601 40.909 0.00 0.00 39.98 2.27
150 151 3.772025 TGGGGTGAAACATTGACAAAAGT 59.228 39.130 0.00 0.00 39.98 2.66
151 152 4.223923 TGGGGTGAAACATTGACAAAAGTT 59.776 37.500 0.00 0.00 39.98 2.66
152 153 5.422331 TGGGGTGAAACATTGACAAAAGTTA 59.578 36.000 9.07 0.00 39.98 2.24
153 154 6.070767 TGGGGTGAAACATTGACAAAAGTTAA 60.071 34.615 9.07 1.02 39.98 2.01
154 155 6.819146 GGGGTGAAACATTGACAAAAGTTAAA 59.181 34.615 9.07 0.75 39.98 1.52
155 156 7.334671 GGGGTGAAACATTGACAAAAGTTAAAA 59.665 33.333 9.07 0.00 39.98 1.52
156 157 8.722394 GGGTGAAACATTGACAAAAGTTAAAAA 58.278 29.630 9.07 0.00 39.98 1.94
157 158 9.753669 GGTGAAACATTGACAAAAGTTAAAAAG 57.246 29.630 9.07 0.00 39.98 2.27
160 161 9.261318 GAAACATTGACAAAAGTTAAAAAGTGC 57.739 29.630 9.07 0.00 0.00 4.40
161 162 8.546597 AACATTGACAAAAGTTAAAAAGTGCT 57.453 26.923 7.40 0.00 0.00 4.40
162 163 8.546597 ACATTGACAAAAGTTAAAAAGTGCTT 57.453 26.923 0.00 0.00 0.00 3.91
163 164 8.442384 ACATTGACAAAAGTTAAAAAGTGCTTG 58.558 29.630 0.00 0.00 0.00 4.01
164 165 6.401955 TGACAAAAGTTAAAAAGTGCTTGC 57.598 33.333 0.00 0.00 0.00 4.01
165 166 5.928839 TGACAAAAGTTAAAAAGTGCTTGCA 59.071 32.000 0.00 0.00 0.00 4.08
166 167 6.425114 TGACAAAAGTTAAAAAGTGCTTGCAA 59.575 30.769 0.00 0.00 0.00 4.08
167 168 7.041780 TGACAAAAGTTAAAAAGTGCTTGCAAA 60.042 29.630 0.00 0.00 0.00 3.68
168 169 7.643579 ACAAAAGTTAAAAAGTGCTTGCAAAA 58.356 26.923 0.00 0.00 0.00 2.44
169 170 8.131731 ACAAAAGTTAAAAAGTGCTTGCAAAAA 58.868 25.926 0.00 0.00 0.00 1.94
170 171 9.127006 CAAAAGTTAAAAAGTGCTTGCAAAAAT 57.873 25.926 0.00 0.00 0.00 1.82
171 172 9.689976 AAAAGTTAAAAAGTGCTTGCAAAAATT 57.310 22.222 0.00 0.00 0.00 1.82
172 173 8.894409 AAGTTAAAAAGTGCTTGCAAAAATTC 57.106 26.923 0.00 0.00 0.00 2.17
173 174 8.038492 AGTTAAAAAGTGCTTGCAAAAATTCA 57.962 26.923 0.00 0.00 0.00 2.57
174 175 8.676401 AGTTAAAAAGTGCTTGCAAAAATTCAT 58.324 25.926 0.00 0.00 0.00 2.57
175 176 8.946935 GTTAAAAAGTGCTTGCAAAAATTCATC 58.053 29.630 0.00 0.00 0.00 2.92
176 177 6.680874 AAAAGTGCTTGCAAAAATTCATCA 57.319 29.167 0.00 0.00 0.00 3.07
177 178 6.870971 AAAGTGCTTGCAAAAATTCATCAT 57.129 29.167 0.00 0.00 0.00 2.45
178 179 5.856126 AGTGCTTGCAAAAATTCATCATG 57.144 34.783 0.00 0.00 0.00 3.07
179 180 4.693566 AGTGCTTGCAAAAATTCATCATGG 59.306 37.500 0.00 0.00 0.00 3.66
180 181 4.691685 GTGCTTGCAAAAATTCATCATGGA 59.308 37.500 0.00 0.00 0.00 3.41
181 182 5.179742 GTGCTTGCAAAAATTCATCATGGAA 59.820 36.000 0.00 0.00 0.00 3.53
182 183 5.941058 TGCTTGCAAAAATTCATCATGGAAT 59.059 32.000 0.00 0.00 39.11 3.01
183 184 6.092944 TGCTTGCAAAAATTCATCATGGAATC 59.907 34.615 0.00 0.00 36.51 2.52
184 185 6.092944 GCTTGCAAAAATTCATCATGGAATCA 59.907 34.615 0.00 0.00 36.51 2.57
185 186 7.201696 GCTTGCAAAAATTCATCATGGAATCAT 60.202 33.333 0.00 0.00 36.51 2.45
186 187 9.320352 CTTGCAAAAATTCATCATGGAATCATA 57.680 29.630 0.00 0.00 36.51 2.15
187 188 9.839817 TTGCAAAAATTCATCATGGAATCATAT 57.160 25.926 0.00 0.00 36.51 1.78
188 189 9.839817 TGCAAAAATTCATCATGGAATCATATT 57.160 25.926 0.00 0.00 36.51 1.28
198 199 9.064706 CATCATGGAATCATATTCCTATAAGGC 57.935 37.037 17.27 0.00 39.31 4.35
199 200 7.275183 TCATGGAATCATATTCCTATAAGGCG 58.725 38.462 17.27 0.00 39.31 5.52
200 201 6.620877 TGGAATCATATTCCTATAAGGCGT 57.379 37.500 17.27 0.00 39.31 5.68
201 202 6.406370 TGGAATCATATTCCTATAAGGCGTG 58.594 40.000 17.27 0.00 39.31 5.34
202 203 5.817816 GGAATCATATTCCTATAAGGCGTGG 59.182 44.000 10.76 0.00 34.61 4.94
203 204 4.202245 TCATATTCCTATAAGGCGTGGC 57.798 45.455 0.00 0.00 34.61 5.01
204 205 3.580895 TCATATTCCTATAAGGCGTGGCA 59.419 43.478 0.00 0.00 34.61 4.92
205 206 4.041075 TCATATTCCTATAAGGCGTGGCAA 59.959 41.667 0.00 0.00 34.61 4.52
206 207 2.791347 TTCCTATAAGGCGTGGCAAA 57.209 45.000 0.00 0.00 34.61 3.68
207 208 2.791347 TCCTATAAGGCGTGGCAAAA 57.209 45.000 0.00 0.00 34.61 2.44
208 209 2.361789 TCCTATAAGGCGTGGCAAAAC 58.638 47.619 0.00 0.00 34.61 2.43
209 210 2.088423 CCTATAAGGCGTGGCAAAACA 58.912 47.619 0.00 0.00 0.00 2.83
210 211 2.490115 CCTATAAGGCGTGGCAAAACAA 59.510 45.455 0.00 0.00 0.00 2.83
211 212 3.057174 CCTATAAGGCGTGGCAAAACAAA 60.057 43.478 0.00 0.00 0.00 2.83
212 213 2.211353 TAAGGCGTGGCAAAACAAAC 57.789 45.000 0.00 0.00 0.00 2.93
213 214 0.247736 AAGGCGTGGCAAAACAAACA 59.752 45.000 0.00 0.00 0.00 2.83
214 215 0.247736 AGGCGTGGCAAAACAAACAA 59.752 45.000 0.00 0.00 0.00 2.83
215 216 1.079503 GGCGTGGCAAAACAAACAAA 58.920 45.000 0.00 0.00 0.00 2.83
216 217 1.668237 GGCGTGGCAAAACAAACAAAT 59.332 42.857 0.00 0.00 0.00 2.32
217 218 2.096657 GGCGTGGCAAAACAAACAAATT 59.903 40.909 0.00 0.00 0.00 1.82
218 219 3.350043 GCGTGGCAAAACAAACAAATTC 58.650 40.909 0.00 0.00 0.00 2.17
219 220 3.181516 GCGTGGCAAAACAAACAAATTCA 60.182 39.130 0.00 0.00 0.00 2.57
220 221 4.576678 CGTGGCAAAACAAACAAATTCAG 58.423 39.130 0.00 0.00 0.00 3.02
221 222 4.092675 CGTGGCAAAACAAACAAATTCAGT 59.907 37.500 0.00 0.00 0.00 3.41
222 223 5.323105 GTGGCAAAACAAACAAATTCAGTG 58.677 37.500 0.00 0.00 0.00 3.66
223 224 4.142730 TGGCAAAACAAACAAATTCAGTGC 60.143 37.500 0.00 0.00 0.00 4.40
224 225 4.094739 GGCAAAACAAACAAATTCAGTGCT 59.905 37.500 0.00 0.00 0.00 4.40
225 226 5.391843 GGCAAAACAAACAAATTCAGTGCTT 60.392 36.000 0.00 0.00 0.00 3.91
226 227 5.734035 GCAAAACAAACAAATTCAGTGCTTC 59.266 36.000 0.00 0.00 0.00 3.86
227 228 6.620303 GCAAAACAAACAAATTCAGTGCTTCA 60.620 34.615 0.00 0.00 0.00 3.02
228 229 7.296660 CAAAACAAACAAATTCAGTGCTTCAA 58.703 30.769 0.00 0.00 0.00 2.69
229 230 7.432350 AAACAAACAAATTCAGTGCTTCAAA 57.568 28.000 0.00 0.00 0.00 2.69
230 231 7.432350 AACAAACAAATTCAGTGCTTCAAAA 57.568 28.000 0.00 0.00 0.00 2.44
231 232 7.614124 ACAAACAAATTCAGTGCTTCAAAAT 57.386 28.000 0.00 0.00 0.00 1.82
232 233 7.465989 ACAAACAAATTCAGTGCTTCAAAATG 58.534 30.769 0.00 0.00 0.00 2.32
233 234 5.662211 ACAAATTCAGTGCTTCAAAATGC 57.338 34.783 0.00 0.00 0.00 3.56
234 235 5.362263 ACAAATTCAGTGCTTCAAAATGCT 58.638 33.333 0.00 0.00 0.00 3.79
235 236 5.818857 ACAAATTCAGTGCTTCAAAATGCTT 59.181 32.000 0.00 0.00 0.00 3.91
236 237 6.316890 ACAAATTCAGTGCTTCAAAATGCTTT 59.683 30.769 0.00 0.00 0.00 3.51
237 238 6.930667 AATTCAGTGCTTCAAAATGCTTTT 57.069 29.167 0.00 0.00 0.00 2.27
238 239 5.971895 TTCAGTGCTTCAAAATGCTTTTC 57.028 34.783 0.00 0.00 0.00 2.29
239 240 5.008619 TCAGTGCTTCAAAATGCTTTTCA 57.991 34.783 0.00 0.00 0.00 2.69
240 241 5.417811 TCAGTGCTTCAAAATGCTTTTCAA 58.582 33.333 0.00 0.00 0.00 2.69
241 242 5.873712 TCAGTGCTTCAAAATGCTTTTCAAA 59.126 32.000 0.00 0.00 0.00 2.69
242 243 6.539464 TCAGTGCTTCAAAATGCTTTTCAAAT 59.461 30.769 0.00 0.00 0.00 2.32
243 244 7.066043 TCAGTGCTTCAAAATGCTTTTCAAATT 59.934 29.630 0.00 0.00 0.00 1.82
244 245 8.336806 CAGTGCTTCAAAATGCTTTTCAAATTA 58.663 29.630 0.00 0.00 0.00 1.40
245 246 8.337532 AGTGCTTCAAAATGCTTTTCAAATTAC 58.662 29.630 0.00 0.00 0.00 1.89
246 247 7.587392 GTGCTTCAAAATGCTTTTCAAATTACC 59.413 33.333 0.00 0.00 0.00 2.85
247 248 6.791775 GCTTCAAAATGCTTTTCAAATTACCG 59.208 34.615 0.00 0.00 0.00 4.02
248 249 7.307101 GCTTCAAAATGCTTTTCAAATTACCGA 60.307 33.333 0.00 0.00 0.00 4.69
249 250 8.600449 TTCAAAATGCTTTTCAAATTACCGAT 57.400 26.923 0.00 0.00 0.00 4.18
250 251 8.600449 TCAAAATGCTTTTCAAATTACCGATT 57.400 26.923 0.00 0.00 0.00 3.34
251 252 9.050601 TCAAAATGCTTTTCAAATTACCGATTT 57.949 25.926 0.00 0.00 38.49 2.17
252 253 9.662545 CAAAATGCTTTTCAAATTACCGATTTT 57.337 25.926 0.00 0.00 35.79 1.82
273 274 1.243902 TTTTTGCCACGCCTTCTAGG 58.756 50.000 0.00 0.00 38.80 3.02
274 275 0.398696 TTTTGCCACGCCTTCTAGGA 59.601 50.000 0.00 0.00 37.67 2.94
275 276 0.398696 TTTGCCACGCCTTCTAGGAA 59.601 50.000 0.00 0.00 37.67 3.36
276 277 0.618458 TTGCCACGCCTTCTAGGAAT 59.382 50.000 0.00 0.00 37.67 3.01
277 278 0.107703 TGCCACGCCTTCTAGGAATG 60.108 55.000 0.00 0.00 37.67 2.67
278 279 0.107654 GCCACGCCTTCTAGGAATGT 60.108 55.000 0.00 0.00 37.67 2.71
279 280 1.656652 CCACGCCTTCTAGGAATGTG 58.343 55.000 0.00 2.20 37.67 3.21
280 281 1.207089 CCACGCCTTCTAGGAATGTGA 59.793 52.381 12.05 0.00 37.67 3.58
281 282 2.158900 CCACGCCTTCTAGGAATGTGAT 60.159 50.000 12.05 0.00 37.67 3.06
282 283 3.535561 CACGCCTTCTAGGAATGTGATT 58.464 45.455 0.00 0.00 37.67 2.57
283 284 3.557595 CACGCCTTCTAGGAATGTGATTC 59.442 47.826 0.00 0.00 37.67 2.52
284 285 2.797156 CGCCTTCTAGGAATGTGATTCG 59.203 50.000 0.00 0.00 37.67 3.34
285 286 3.738281 CGCCTTCTAGGAATGTGATTCGT 60.738 47.826 0.00 0.00 37.67 3.85
286 287 3.557595 GCCTTCTAGGAATGTGATTCGTG 59.442 47.826 0.00 0.00 37.67 4.35
287 288 4.680708 GCCTTCTAGGAATGTGATTCGTGA 60.681 45.833 0.00 0.00 37.67 4.35
288 289 4.806247 CCTTCTAGGAATGTGATTCGTGAC 59.194 45.833 0.00 0.00 37.67 3.67
289 290 4.028852 TCTAGGAATGTGATTCGTGACG 57.971 45.455 0.00 0.00 40.17 4.35
290 291 3.692593 TCTAGGAATGTGATTCGTGACGA 59.307 43.478 2.39 2.39 40.17 4.20
291 292 9.905275 CCTTCTAGGAATGTGATTCGTGACGAA 62.905 44.444 23.30 23.30 43.56 3.85
302 303 2.380660 TCGTGACGAATTTTTGCAAGC 58.619 42.857 4.69 0.00 31.06 4.01
303 304 2.115595 CGTGACGAATTTTTGCAAGCA 58.884 42.857 0.00 0.00 0.00 3.91
304 305 2.097925 CGTGACGAATTTTTGCAAGCAC 60.098 45.455 0.00 0.00 0.00 4.40
305 306 3.115554 GTGACGAATTTTTGCAAGCACT 58.884 40.909 0.00 0.00 0.00 4.40
306 307 3.551485 GTGACGAATTTTTGCAAGCACTT 59.449 39.130 0.00 0.00 0.00 3.16
307 308 4.737765 GTGACGAATTTTTGCAAGCACTTA 59.262 37.500 0.00 0.00 0.00 2.24
308 309 5.231147 GTGACGAATTTTTGCAAGCACTTAA 59.769 36.000 0.00 0.00 0.00 1.85
309 310 5.807520 TGACGAATTTTTGCAAGCACTTAAA 59.192 32.000 0.00 0.00 0.00 1.52
310 311 6.311445 TGACGAATTTTTGCAAGCACTTAAAA 59.689 30.769 0.00 0.00 0.00 1.52
311 312 6.474364 ACGAATTTTTGCAAGCACTTAAAAC 58.526 32.000 0.00 0.00 0.00 2.43
312 313 6.312672 ACGAATTTTTGCAAGCACTTAAAACT 59.687 30.769 0.00 0.00 0.00 2.66
313 314 7.148490 ACGAATTTTTGCAAGCACTTAAAACTT 60.148 29.630 0.00 0.47 0.00 2.66
314 315 7.691877 CGAATTTTTGCAAGCACTTAAAACTTT 59.308 29.630 0.00 0.00 0.00 2.66
315 316 9.340695 GAATTTTTGCAAGCACTTAAAACTTTT 57.659 25.926 0.00 0.00 0.00 2.27
316 317 8.672214 ATTTTTGCAAGCACTTAAAACTTTTG 57.328 26.923 0.00 0.00 0.00 2.44
317 318 6.793492 TTTGCAAGCACTTAAAACTTTTGT 57.207 29.167 0.00 0.00 0.00 2.83
318 319 6.401955 TTGCAAGCACTTAAAACTTTTGTC 57.598 33.333 0.00 0.00 0.00 3.18
319 320 5.473931 TGCAAGCACTTAAAACTTTTGTCA 58.526 33.333 0.00 0.00 0.00 3.58
320 321 5.928839 TGCAAGCACTTAAAACTTTTGTCAA 59.071 32.000 0.00 0.00 0.00 3.18
321 322 6.593382 TGCAAGCACTTAAAACTTTTGTCAAT 59.407 30.769 0.00 0.00 0.00 2.57
322 323 6.901357 GCAAGCACTTAAAACTTTTGTCAATG 59.099 34.615 0.00 0.00 0.00 2.82
323 324 7.412891 GCAAGCACTTAAAACTTTTGTCAATGT 60.413 33.333 0.00 0.00 0.00 2.71
324 325 8.442384 CAAGCACTTAAAACTTTTGTCAATGTT 58.558 29.630 0.00 0.00 32.90 2.71
325 326 8.546597 AGCACTTAAAACTTTTGTCAATGTTT 57.453 26.923 9.87 9.87 40.32 2.83
326 327 8.655970 AGCACTTAAAACTTTTGTCAATGTTTC 58.344 29.630 13.86 5.09 38.61 2.78
327 328 8.655970 GCACTTAAAACTTTTGTCAATGTTTCT 58.344 29.630 13.86 9.23 38.61 2.52
329 330 9.366216 ACTTAAAACTTTTGTCAATGTTTCTCC 57.634 29.630 13.86 0.00 38.61 3.71
330 331 9.364989 CTTAAAACTTTTGTCAATGTTTCTCCA 57.635 29.630 13.86 3.10 38.61 3.86
331 332 9.712305 TTAAAACTTTTGTCAATGTTTCTCCAA 57.288 25.926 13.86 7.00 38.61 3.53
332 333 8.614469 AAAACTTTTGTCAATGTTTCTCCAAA 57.386 26.923 13.86 0.00 38.61 3.28
333 334 8.614469 AAACTTTTGTCAATGTTTCTCCAAAA 57.386 26.923 9.87 0.00 36.13 2.44
334 335 8.614469 AACTTTTGTCAATGTTTCTCCAAAAA 57.386 26.923 0.00 0.00 33.09 1.94
376 377 9.914923 GATTTTGTTTTGATTTTACTGTTCACC 57.085 29.630 0.00 0.00 0.00 4.02
377 378 7.835634 TTTGTTTTGATTTTACTGTTCACCC 57.164 32.000 0.00 0.00 0.00 4.61
378 379 5.583495 TGTTTTGATTTTACTGTTCACCCG 58.417 37.500 0.00 0.00 0.00 5.28
379 380 5.357314 TGTTTTGATTTTACTGTTCACCCGA 59.643 36.000 0.00 0.00 0.00 5.14
380 381 5.682943 TTTGATTTTACTGTTCACCCGAG 57.317 39.130 0.00 0.00 0.00 4.63
381 382 3.071479 TGATTTTACTGTTCACCCGAGC 58.929 45.455 0.00 0.00 0.00 5.03
382 383 2.922740 TTTTACTGTTCACCCGAGCT 57.077 45.000 0.00 0.00 0.00 4.09
383 384 2.450609 TTTACTGTTCACCCGAGCTC 57.549 50.000 2.73 2.73 0.00 4.09
384 385 1.334160 TTACTGTTCACCCGAGCTCA 58.666 50.000 15.40 0.00 0.00 4.26
385 386 1.557099 TACTGTTCACCCGAGCTCAT 58.443 50.000 15.40 0.00 0.00 2.90
386 387 0.687354 ACTGTTCACCCGAGCTCATT 59.313 50.000 15.40 0.00 0.00 2.57
387 388 1.072331 ACTGTTCACCCGAGCTCATTT 59.928 47.619 15.40 0.00 0.00 2.32
388 389 1.466167 CTGTTCACCCGAGCTCATTTG 59.534 52.381 15.40 6.81 0.00 2.32
389 390 1.071542 TGTTCACCCGAGCTCATTTGA 59.928 47.619 15.40 9.18 0.00 2.69
390 391 1.734465 GTTCACCCGAGCTCATTTGAG 59.266 52.381 15.40 3.13 44.75 3.02
399 400 2.093216 CTCATTTGAGCTCGGGTGC 58.907 57.895 9.64 0.00 35.13 5.01
400 401 0.674581 CTCATTTGAGCTCGGGTGCA 60.675 55.000 9.64 0.00 35.13 4.57
401 402 0.250684 TCATTTGAGCTCGGGTGCAA 60.251 50.000 9.64 0.00 34.99 4.08
402 403 0.597568 CATTTGAGCTCGGGTGCAAA 59.402 50.000 9.64 3.81 35.07 3.68
403 404 1.000385 CATTTGAGCTCGGGTGCAAAA 60.000 47.619 9.64 2.35 34.38 2.44
404 405 0.383949 TTTGAGCTCGGGTGCAAAAC 59.616 50.000 9.64 0.00 34.99 2.43
405 406 0.465460 TTGAGCTCGGGTGCAAAACT 60.465 50.000 9.64 0.00 34.99 2.66
406 407 0.884704 TGAGCTCGGGTGCAAAACTC 60.885 55.000 9.64 0.00 34.99 3.01
407 408 0.603975 GAGCTCGGGTGCAAAACTCT 60.604 55.000 0.00 0.00 34.99 3.24
408 409 0.886490 AGCTCGGGTGCAAAACTCTG 60.886 55.000 0.00 0.00 34.99 3.35
409 410 1.576421 CTCGGGTGCAAAACTCTGC 59.424 57.895 0.00 0.00 42.95 4.26
442 443 0.599204 CCGGTGTTACAACAGAGCGT 60.599 55.000 0.06 0.00 40.05 5.07
446 447 2.729882 GGTGTTACAACAGAGCGTGTAG 59.270 50.000 0.00 0.00 39.03 2.74
462 463 3.463944 GTGTAGGCGCCATAGTTTACAT 58.536 45.455 31.54 5.89 0.00 2.29
476 477 3.761445 TACATAGGGCGCGTCGTGC 62.761 63.158 22.21 22.21 41.47 5.34
485 486 4.994201 GCGTCGTGCGTGAGTGGA 62.994 66.667 0.00 0.00 43.66 4.02
486 487 2.801162 CGTCGTGCGTGAGTGGAG 60.801 66.667 0.00 0.00 35.54 3.86
487 488 2.643272 GTCGTGCGTGAGTGGAGA 59.357 61.111 0.00 0.00 0.00 3.71
488 489 1.007734 GTCGTGCGTGAGTGGAGAA 60.008 57.895 0.00 0.00 0.00 2.87
489 490 1.004277 GTCGTGCGTGAGTGGAGAAG 61.004 60.000 0.00 0.00 0.00 2.85
490 491 1.170290 TCGTGCGTGAGTGGAGAAGA 61.170 55.000 0.00 0.00 0.00 2.87
491 492 0.730834 CGTGCGTGAGTGGAGAAGAG 60.731 60.000 0.00 0.00 0.00 2.85
492 493 0.389166 GTGCGTGAGTGGAGAAGAGG 60.389 60.000 0.00 0.00 0.00 3.69
493 494 0.539669 TGCGTGAGTGGAGAAGAGGA 60.540 55.000 0.00 0.00 0.00 3.71
494 495 0.603569 GCGTGAGTGGAGAAGAGGAA 59.396 55.000 0.00 0.00 0.00 3.36
495 496 1.670380 GCGTGAGTGGAGAAGAGGAAC 60.670 57.143 0.00 0.00 0.00 3.62
496 497 1.067495 CGTGAGTGGAGAAGAGGAACC 60.067 57.143 0.00 0.00 0.00 3.62
497 498 1.067495 GTGAGTGGAGAAGAGGAACCG 60.067 57.143 0.00 0.00 0.00 4.44
498 499 0.533032 GAGTGGAGAAGAGGAACCGG 59.467 60.000 0.00 0.00 0.00 5.28
499 500 0.114560 AGTGGAGAAGAGGAACCGGA 59.885 55.000 9.46 0.00 0.00 5.14
500 501 1.196012 GTGGAGAAGAGGAACCGGAT 58.804 55.000 9.46 0.00 0.00 4.18
501 502 1.137282 GTGGAGAAGAGGAACCGGATC 59.863 57.143 9.46 5.54 0.00 3.36
502 503 0.753867 GGAGAAGAGGAACCGGATCC 59.246 60.000 22.70 22.70 39.96 3.36
511 512 3.388345 GGAACCGGATCCTCTAACATC 57.612 52.381 22.87 0.00 36.50 3.06
512 513 2.966516 GGAACCGGATCCTCTAACATCT 59.033 50.000 22.87 0.00 36.50 2.90
513 514 3.388350 GGAACCGGATCCTCTAACATCTT 59.612 47.826 22.87 0.00 36.50 2.40
514 515 4.501743 GGAACCGGATCCTCTAACATCTTC 60.502 50.000 22.87 3.41 36.50 2.87
515 516 3.643237 ACCGGATCCTCTAACATCTTCA 58.357 45.455 9.46 0.00 0.00 3.02
516 517 4.030913 ACCGGATCCTCTAACATCTTCAA 58.969 43.478 9.46 0.00 0.00 2.69
517 518 4.100189 ACCGGATCCTCTAACATCTTCAAG 59.900 45.833 9.46 0.00 0.00 3.02
518 519 4.502259 CCGGATCCTCTAACATCTTCAAGG 60.502 50.000 10.75 0.00 0.00 3.61
519 520 4.502259 CGGATCCTCTAACATCTTCAAGGG 60.502 50.000 10.75 0.00 0.00 3.95
520 521 4.656112 GGATCCTCTAACATCTTCAAGGGA 59.344 45.833 3.84 0.00 0.00 4.20
521 522 5.309282 GGATCCTCTAACATCTTCAAGGGAT 59.691 44.000 3.84 0.00 34.29 3.85
522 523 5.620738 TCCTCTAACATCTTCAAGGGATG 57.379 43.478 0.00 0.00 44.17 3.51
528 529 2.977914 CATCTTCAAGGGATGTCACGT 58.022 47.619 0.00 0.00 36.69 4.49
529 530 4.123497 CATCTTCAAGGGATGTCACGTA 57.877 45.455 0.00 0.00 36.69 3.57
530 531 4.503910 CATCTTCAAGGGATGTCACGTAA 58.496 43.478 0.00 0.00 36.69 3.18
531 532 4.568359 CATCTTCAAGGGATGTCACGTAAG 59.432 45.833 0.00 0.00 38.64 2.34
532 533 2.380084 TCAAGGGATGTCACGTAAGC 57.620 50.000 0.00 0.00 45.62 3.09
533 534 1.899814 TCAAGGGATGTCACGTAAGCT 59.100 47.619 0.00 0.00 45.62 3.74
534 535 3.093814 TCAAGGGATGTCACGTAAGCTA 58.906 45.455 0.00 0.00 45.62 3.32
535 536 3.119245 TCAAGGGATGTCACGTAAGCTAC 60.119 47.826 0.00 0.00 45.62 3.58
536 537 2.453521 AGGGATGTCACGTAAGCTACA 58.546 47.619 0.00 0.00 45.62 2.74
537 538 2.427453 AGGGATGTCACGTAAGCTACAG 59.573 50.000 0.00 0.00 45.62 2.74
538 539 2.165845 GGGATGTCACGTAAGCTACAGT 59.834 50.000 0.00 0.00 45.62 3.55
539 540 3.379372 GGGATGTCACGTAAGCTACAGTA 59.621 47.826 0.00 0.00 45.62 2.74
540 541 4.142315 GGGATGTCACGTAAGCTACAGTAA 60.142 45.833 0.00 0.00 45.62 2.24
541 542 4.797349 GGATGTCACGTAAGCTACAGTAAC 59.203 45.833 0.00 0.00 45.62 2.50
542 543 4.164822 TGTCACGTAAGCTACAGTAACC 57.835 45.455 0.00 0.00 45.62 2.85
543 544 3.569277 TGTCACGTAAGCTACAGTAACCA 59.431 43.478 0.00 0.00 45.62 3.67
544 545 4.219070 TGTCACGTAAGCTACAGTAACCAT 59.781 41.667 0.00 0.00 45.62 3.55
545 546 4.561606 GTCACGTAAGCTACAGTAACCATG 59.438 45.833 0.00 0.00 45.62 3.66
546 547 4.460034 TCACGTAAGCTACAGTAACCATGA 59.540 41.667 0.00 0.00 45.62 3.07
547 548 4.561606 CACGTAAGCTACAGTAACCATGAC 59.438 45.833 0.00 0.00 45.62 3.06
548 549 4.219070 ACGTAAGCTACAGTAACCATGACA 59.781 41.667 0.00 0.00 45.62 3.58
549 550 5.105473 ACGTAAGCTACAGTAACCATGACAT 60.105 40.000 0.00 0.00 45.62 3.06
550 551 5.459107 CGTAAGCTACAGTAACCATGACATC 59.541 44.000 0.00 0.00 0.00 3.06
551 552 4.408182 AGCTACAGTAACCATGACATCC 57.592 45.455 0.00 0.00 0.00 3.51
552 553 3.134804 AGCTACAGTAACCATGACATCCC 59.865 47.826 0.00 0.00 0.00 3.85
553 554 3.134804 GCTACAGTAACCATGACATCCCT 59.865 47.826 0.00 0.00 0.00 4.20
554 555 4.384208 GCTACAGTAACCATGACATCCCTT 60.384 45.833 0.00 0.00 0.00 3.95
555 556 4.222124 ACAGTAACCATGACATCCCTTC 57.778 45.455 0.00 0.00 0.00 3.46
556 557 3.846588 ACAGTAACCATGACATCCCTTCT 59.153 43.478 0.00 0.00 0.00 2.85
557 558 4.289672 ACAGTAACCATGACATCCCTTCTT 59.710 41.667 0.00 0.00 0.00 2.52
560 561 3.356529 ACCATGACATCCCTTCTTCAC 57.643 47.619 0.00 0.00 0.00 3.18
635 639 6.276847 AGAAGAGAAGTTACAGTCAACAGTG 58.723 40.000 0.00 0.00 0.00 3.66
636 640 5.599999 AGAGAAGTTACAGTCAACAGTGT 57.400 39.130 0.00 0.00 39.65 3.55
655 670 5.639082 CAGTGTGTGATAAAGTGCAGATACA 59.361 40.000 0.00 0.00 0.00 2.29
658 673 6.147821 GTGTGTGATAAAGTGCAGATACAGTT 59.852 38.462 0.00 0.00 34.66 3.16
853 869 7.807977 ATCCATTTATGACTGCGTATCTTTT 57.192 32.000 0.00 0.00 0.00 2.27
890 906 4.352009 ACTTGAGGACACTGATCTCAGAT 58.648 43.478 13.94 0.00 46.59 2.90
891 907 4.776837 ACTTGAGGACACTGATCTCAGATT 59.223 41.667 13.94 0.13 46.59 2.40
905 921 9.153721 CTGATCTCAGATTATTCTCCTTTATGC 57.846 37.037 0.72 0.00 46.59 3.14
986 1002 5.535753 AGCACAAAATAAGAGCAAACCTT 57.464 34.783 0.00 0.00 0.00 3.50
1019 1035 3.739401 AATGGCCCTGTTAGCTAGTTT 57.261 42.857 0.00 0.00 0.00 2.66
1060 1076 1.533469 CCTCGTTGTCGTTCCCTCCT 61.533 60.000 0.00 0.00 38.33 3.69
1063 1079 1.171308 CGTTGTCGTTCCCTCCTCTA 58.829 55.000 0.00 0.00 0.00 2.43
1102 1118 3.320078 CCGAAGTATGCGACGGCG 61.320 66.667 6.12 6.12 42.52 6.46
1104 1120 2.845739 CGAAGTATGCGACGGCGTG 61.846 63.158 21.19 11.42 42.52 5.34
1123 1139 1.888436 GAGTGACCATCCCGACTGCA 61.888 60.000 0.00 0.00 0.00 4.41
1234 1250 0.250727 CAGGGAAGGCGAAAAGACCA 60.251 55.000 0.00 0.00 0.00 4.02
1349 1365 2.733218 CCTCGAGAACGCACGCAA 60.733 61.111 15.71 0.00 39.58 4.85
1407 1423 1.372375 GATCGGCGAGGCTAGCTTC 60.372 63.158 19.05 16.51 34.52 3.86
1456 1472 0.693622 TAATCAGGGGGCGAACAACA 59.306 50.000 0.00 0.00 0.00 3.33
1529 1545 7.204604 TGGCAGCTTATATTTTGATGTTGATG 58.795 34.615 0.00 0.00 0.00 3.07
1656 1672 7.482654 TGATATTGCTCAAGAACGGATAAAG 57.517 36.000 0.00 0.00 0.00 1.85
1670 1686 9.832445 AGAACGGATAAAGAAAGATATAAAGCA 57.168 29.630 0.00 0.00 0.00 3.91
1757 1773 6.232581 AGAGGCCAATGCTATCATATACTC 57.767 41.667 5.01 0.00 37.74 2.59
1761 1777 5.363939 GCCAATGCTATCATATACTCCCTC 58.636 45.833 0.00 0.00 31.46 4.30
1763 1779 5.452496 CCAATGCTATCATATACTCCCTCCG 60.452 48.000 0.00 0.00 31.46 4.63
1768 1784 3.897657 TCATATACTCCCTCCGTTCCT 57.102 47.619 0.00 0.00 0.00 3.36
1774 1790 8.120538 TCATATACTCCCTCCGTTCCTAAATAT 58.879 37.037 0.00 0.00 0.00 1.28
1775 1791 8.759782 CATATACTCCCTCCGTTCCTAAATATT 58.240 37.037 0.00 0.00 0.00 1.28
1777 1793 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
1778 1794 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
1781 1797 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
1782 1798 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
1783 1799 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
1784 1800 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
1785 1801 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
1786 1802 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
1816 1832 9.719355 TTTCAATAAGTGACTCTATACAAAGCA 57.281 29.630 0.00 0.00 35.39 3.91
1817 1833 9.719355 TTCAATAAGTGACTCTATACAAAGCAA 57.281 29.630 0.00 0.00 35.39 3.91
1818 1834 9.719355 TCAATAAGTGACTCTATACAAAGCAAA 57.281 29.630 0.00 0.00 0.00 3.68
1822 1838 8.621532 AAGTGACTCTATACAAAGCAAAATGA 57.378 30.769 0.00 0.00 0.00 2.57
1823 1839 8.261492 AGTGACTCTATACAAAGCAAAATGAG 57.739 34.615 0.00 0.00 0.00 2.90
1824 1840 7.880195 AGTGACTCTATACAAAGCAAAATGAGT 59.120 33.333 0.00 0.00 35.35 3.41
1825 1841 7.959651 GTGACTCTATACAAAGCAAAATGAGTG 59.040 37.037 0.00 0.00 33.21 3.51
1826 1842 7.877612 TGACTCTATACAAAGCAAAATGAGTGA 59.122 33.333 0.00 0.00 33.21 3.41
1827 1843 8.621532 ACTCTATACAAAGCAAAATGAGTGAA 57.378 30.769 0.00 0.00 32.05 3.18
1828 1844 9.236006 ACTCTATACAAAGCAAAATGAGTGAAT 57.764 29.630 0.00 0.00 32.05 2.57
1829 1845 9.713740 CTCTATACAAAGCAAAATGAGTGAATC 57.286 33.333 0.00 0.00 0.00 2.52
1830 1846 9.453572 TCTATACAAAGCAAAATGAGTGAATCT 57.546 29.630 0.00 0.00 0.00 2.40
1833 1849 7.275888 ACAAAGCAAAATGAGTGAATCTACA 57.724 32.000 0.00 0.00 0.00 2.74
1834 1850 7.715657 ACAAAGCAAAATGAGTGAATCTACAA 58.284 30.769 0.00 0.00 0.00 2.41
1835 1851 8.362639 ACAAAGCAAAATGAGTGAATCTACAAT 58.637 29.630 0.00 0.00 0.00 2.71
1836 1852 8.857216 CAAAGCAAAATGAGTGAATCTACAATC 58.143 33.333 0.00 0.00 35.78 2.67
1837 1853 7.934855 AGCAAAATGAGTGAATCTACAATCT 57.065 32.000 0.00 0.00 36.14 2.40
1838 1854 9.453572 AAGCAAAATGAGTGAATCTACAATCTA 57.546 29.630 0.00 0.00 36.14 1.98
1839 1855 9.453572 AGCAAAATGAGTGAATCTACAATCTAA 57.546 29.630 0.00 0.00 36.14 2.10
1870 1886 9.533831 TGTCTATATACATCCATATGTGACAGT 57.466 33.333 1.24 4.66 45.99 3.55
1872 1888 9.190317 TCTATATACATCCATATGTGACAGTCC 57.810 37.037 1.24 0.00 45.99 3.85
1873 1889 7.797121 ATATACATCCATATGTGACAGTCCA 57.203 36.000 1.24 0.00 45.99 4.02
1874 1890 6.692849 ATACATCCATATGTGACAGTCCAT 57.307 37.500 1.24 4.13 45.99 3.41
1875 1891 5.378230 ACATCCATATGTGACAGTCCATT 57.622 39.130 9.12 0.00 44.79 3.16
1876 1892 5.759059 ACATCCATATGTGACAGTCCATTT 58.241 37.500 9.12 1.15 44.79 2.32
1877 1893 6.899089 ACATCCATATGTGACAGTCCATTTA 58.101 36.000 9.12 0.00 44.79 1.40
1878 1894 7.345691 ACATCCATATGTGACAGTCCATTTAA 58.654 34.615 9.12 0.00 44.79 1.52
1879 1895 7.833682 ACATCCATATGTGACAGTCCATTTAAA 59.166 33.333 9.12 0.00 44.79 1.52
1880 1896 8.685427 CATCCATATGTGACAGTCCATTTAAAA 58.315 33.333 9.12 0.00 0.00 1.52
1881 1897 8.821686 TCCATATGTGACAGTCCATTTAAAAT 57.178 30.769 9.12 0.00 0.00 1.82
1882 1898 8.902806 TCCATATGTGACAGTCCATTTAAAATC 58.097 33.333 9.12 0.00 0.00 2.17
1883 1899 8.906867 CCATATGTGACAGTCCATTTAAAATCT 58.093 33.333 9.12 0.00 0.00 2.40
1884 1900 9.941664 CATATGTGACAGTCCATTTAAAATCTC 57.058 33.333 9.12 0.00 0.00 2.75
1885 1901 9.911788 ATATGTGACAGTCCATTTAAAATCTCT 57.088 29.630 9.12 0.00 0.00 3.10
1887 1903 9.739276 ATGTGACAGTCCATTTAAAATCTCTAA 57.261 29.630 0.00 0.00 0.00 2.10
1888 1904 9.567776 TGTGACAGTCCATTTAAAATCTCTAAA 57.432 29.630 0.00 0.00 0.00 1.85
2053 2070 2.284855 GGTTGAACGTCGTTGATATCGC 60.285 50.000 16.75 0.00 0.00 4.58
2071 2088 0.617820 GCAGTACTCCCTCCTTCCCA 60.618 60.000 0.00 0.00 0.00 4.37
2122 2139 2.224305 ACTCCCATAATCTAAGGCGCAC 60.224 50.000 10.83 0.00 0.00 5.34
2139 2156 2.165998 GCACATGCCTTTTTCTCTCCT 58.834 47.619 0.00 0.00 34.31 3.69
2175 2192 3.444916 TCCACTGACGATCGCTATTTTC 58.555 45.455 16.60 4.50 0.00 2.29
2185 2202 3.066291 TCGCTATTTTCCTGCAAAGGA 57.934 42.857 0.00 0.00 35.93 3.36
2235 2252 3.768757 GGATGCCTATCTCTCTACAGCAT 59.231 47.826 0.00 0.00 41.85 3.79
2261 2278 4.960469 ACGATAGGTCAGGTAAGGATCAAA 59.040 41.667 0.00 0.00 43.77 2.69
2287 2320 4.435651 GCGCTAATTTTCGTGCTAAGAACT 60.436 41.667 0.00 0.00 34.05 3.01
2298 2331 4.430908 GTGCTAAGAACTAACACGCCTAT 58.569 43.478 0.00 0.00 0.00 2.57
2310 2343 0.321298 ACGCCTATGAACCAAACGCT 60.321 50.000 0.00 0.00 0.00 5.07
2420 2453 4.082190 CACTAGCTATATACACGGCCATGT 60.082 45.833 10.40 10.40 36.56 3.21
2434 2467 2.092646 GGCCATGTCCACCACTTGTATA 60.093 50.000 0.00 0.00 0.00 1.47
2435 2468 2.943033 GCCATGTCCACCACTTGTATAC 59.057 50.000 0.00 0.00 0.00 1.47
2436 2469 3.621214 GCCATGTCCACCACTTGTATACA 60.621 47.826 0.08 0.08 0.00 2.29
2437 2470 4.780815 CCATGTCCACCACTTGTATACAT 58.219 43.478 6.36 0.00 33.85 2.29
2438 2471 4.576053 CCATGTCCACCACTTGTATACATG 59.424 45.833 15.29 15.29 42.89 3.21
2439 2472 3.605634 TGTCCACCACTTGTATACATGC 58.394 45.455 16.47 2.17 0.00 4.06
2440 2473 3.008485 TGTCCACCACTTGTATACATGCA 59.992 43.478 16.47 0.00 0.00 3.96
2441 2474 4.199310 GTCCACCACTTGTATACATGCAT 58.801 43.478 16.47 0.00 0.00 3.96
2442 2475 4.035558 GTCCACCACTTGTATACATGCATG 59.964 45.833 25.09 25.09 0.00 4.06
2443 2476 3.947196 CCACCACTTGTATACATGCATGT 59.053 43.478 33.20 33.20 44.48 3.21
2444 2477 5.104735 TCCACCACTTGTATACATGCATGTA 60.105 40.000 35.03 35.03 46.21 2.29
2445 2478 5.588246 CCACCACTTGTATACATGCATGTAA 59.412 40.000 36.12 23.61 45.40 2.41
2446 2479 6.458206 CCACCACTTGTATACATGCATGTAAC 60.458 42.308 36.12 30.93 45.40 2.50
2447 2480 5.588648 ACCACTTGTATACATGCATGTAACC 59.411 40.000 36.12 28.59 45.40 2.85
2448 2481 5.588246 CCACTTGTATACATGCATGTAACCA 59.412 40.000 36.12 30.35 45.40 3.67
2449 2482 6.458206 CCACTTGTATACATGCATGTAACCAC 60.458 42.308 36.12 30.62 45.40 4.16
2450 2483 6.093357 CACTTGTATACATGCATGTAACCACA 59.907 38.462 36.12 32.25 45.40 4.17
2451 2484 6.316140 ACTTGTATACATGCATGTAACCACAG 59.684 38.462 36.12 29.13 45.40 3.66
2452 2485 5.122519 TGTATACATGCATGTAACCACAGG 58.877 41.667 36.12 7.65 45.40 4.00
2457 2490 2.767536 CATGTAACCACAGGCGGAG 58.232 57.895 0.00 0.00 38.30 4.63
2458 2491 0.249120 CATGTAACCACAGGCGGAGA 59.751 55.000 0.00 0.00 38.30 3.71
2459 2492 0.981183 ATGTAACCACAGGCGGAGAA 59.019 50.000 0.00 0.00 38.30 2.87
2460 2493 0.034337 TGTAACCACAGGCGGAGAAC 59.966 55.000 0.00 0.00 0.00 3.01
2461 2494 0.672711 GTAACCACAGGCGGAGAACC 60.673 60.000 0.00 0.00 0.00 3.62
2462 2495 1.833787 TAACCACAGGCGGAGAACCC 61.834 60.000 0.00 0.00 0.00 4.11
2478 2511 2.910994 CCGGTAGGGCGAGGTAGG 60.911 72.222 0.00 0.00 0.00 3.18
2479 2512 2.910994 CGGTAGGGCGAGGTAGGG 60.911 72.222 0.00 0.00 0.00 3.53
2480 2513 3.232483 GGTAGGGCGAGGTAGGGC 61.232 72.222 0.00 0.00 0.00 5.19
2481 2514 3.603671 GTAGGGCGAGGTAGGGCG 61.604 72.222 0.00 0.00 0.00 6.13
2496 2529 2.046314 GCGCTTGCCCTACCTTGA 60.046 61.111 0.00 0.00 0.00 3.02
2497 2530 1.452108 GCGCTTGCCCTACCTTGAT 60.452 57.895 0.00 0.00 0.00 2.57
2498 2531 1.032114 GCGCTTGCCCTACCTTGATT 61.032 55.000 0.00 0.00 0.00 2.57
2499 2532 1.463674 CGCTTGCCCTACCTTGATTT 58.536 50.000 0.00 0.00 0.00 2.17
2500 2533 1.401905 CGCTTGCCCTACCTTGATTTC 59.598 52.381 0.00 0.00 0.00 2.17
2501 2534 2.728007 GCTTGCCCTACCTTGATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
2502 2535 2.685388 GCTTGCCCTACCTTGATTTCTC 59.315 50.000 0.00 0.00 0.00 2.87
2503 2536 2.691409 TGCCCTACCTTGATTTCTCG 57.309 50.000 0.00 0.00 0.00 4.04
2504 2537 1.209504 TGCCCTACCTTGATTTCTCGG 59.790 52.381 0.00 0.00 0.00 4.63
2505 2538 1.954927 CCCTACCTTGATTTCTCGGC 58.045 55.000 0.00 0.00 0.00 5.54
2506 2539 1.486726 CCCTACCTTGATTTCTCGGCT 59.513 52.381 0.00 0.00 0.00 5.52
2507 2540 2.698797 CCCTACCTTGATTTCTCGGCTA 59.301 50.000 0.00 0.00 0.00 3.93
2508 2541 3.243907 CCCTACCTTGATTTCTCGGCTAG 60.244 52.174 0.00 0.00 0.00 3.42
2509 2542 3.385111 CCTACCTTGATTTCTCGGCTAGT 59.615 47.826 0.00 0.00 0.00 2.57
2510 2543 3.983044 ACCTTGATTTCTCGGCTAGTT 57.017 42.857 0.00 0.00 0.00 2.24
2511 2544 5.068723 CCTACCTTGATTTCTCGGCTAGTTA 59.931 44.000 0.00 0.00 0.00 2.24
2512 2545 5.615925 ACCTTGATTTCTCGGCTAGTTAT 57.384 39.130 0.00 0.00 0.00 1.89
2513 2546 6.726490 ACCTTGATTTCTCGGCTAGTTATA 57.274 37.500 0.00 0.00 0.00 0.98
2514 2547 6.514063 ACCTTGATTTCTCGGCTAGTTATAC 58.486 40.000 0.00 0.00 0.00 1.47
2515 2548 5.629849 CCTTGATTTCTCGGCTAGTTATACG 59.370 44.000 0.00 0.00 0.00 3.06
2516 2549 5.762825 TGATTTCTCGGCTAGTTATACGT 57.237 39.130 0.00 0.00 0.00 3.57
2517 2550 6.866010 TGATTTCTCGGCTAGTTATACGTA 57.134 37.500 0.00 0.00 0.00 3.57
2518 2551 7.444629 TGATTTCTCGGCTAGTTATACGTAT 57.555 36.000 13.54 13.54 0.00 3.06
2519 2552 8.552083 TGATTTCTCGGCTAGTTATACGTATA 57.448 34.615 11.27 11.27 0.00 1.47
2520 2553 8.446273 TGATTTCTCGGCTAGTTATACGTATAC 58.554 37.037 14.81 10.16 0.00 1.47
2521 2554 7.728847 TTTCTCGGCTAGTTATACGTATACA 57.271 36.000 14.81 4.39 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 1.743252 CTCGGGAGCAGAAAGGCAC 60.743 63.158 0.00 0.00 35.83 5.01
52 53 2.665000 CTCGGGAGCAGAAAGGCA 59.335 61.111 0.00 0.00 35.83 4.75
70 71 2.414481 CTGTTCACCGAGCTCATTTGAG 59.586 50.000 15.40 3.13 44.75 3.02
71 72 2.224281 ACTGTTCACCGAGCTCATTTGA 60.224 45.455 15.40 9.55 0.00 2.69
72 73 2.146342 ACTGTTCACCGAGCTCATTTG 58.854 47.619 15.40 7.19 0.00 2.32
73 74 2.550830 ACTGTTCACCGAGCTCATTT 57.449 45.000 15.40 0.00 0.00 2.32
74 75 3.678056 TTACTGTTCACCGAGCTCATT 57.322 42.857 15.40 0.00 0.00 2.57
75 76 3.678056 TTTACTGTTCACCGAGCTCAT 57.322 42.857 15.40 0.00 0.00 2.90
76 77 3.462483 TTTTACTGTTCACCGAGCTCA 57.538 42.857 15.40 0.00 0.00 4.26
77 78 3.060895 CGATTTTACTGTTCACCGAGCTC 59.939 47.826 2.73 2.73 0.00 4.09
78 79 2.993899 CGATTTTACTGTTCACCGAGCT 59.006 45.455 0.00 0.00 0.00 4.09
79 80 2.991190 TCGATTTTACTGTTCACCGAGC 59.009 45.455 0.00 0.00 0.00 5.03
80 81 5.585500 TTTCGATTTTACTGTTCACCGAG 57.415 39.130 0.00 0.00 0.00 4.63
81 82 5.987777 TTTTCGATTTTACTGTTCACCGA 57.012 34.783 0.00 0.00 0.00 4.69
124 125 4.826274 TGTCAATGTTTCACCCCAAAAA 57.174 36.364 0.00 0.00 0.00 1.94
125 126 4.826274 TTGTCAATGTTTCACCCCAAAA 57.174 36.364 0.00 0.00 0.00 2.44
126 127 4.826274 TTTGTCAATGTTTCACCCCAAA 57.174 36.364 0.00 0.00 0.00 3.28
127 128 4.223923 ACTTTTGTCAATGTTTCACCCCAA 59.776 37.500 0.00 0.00 0.00 4.12
128 129 3.772025 ACTTTTGTCAATGTTTCACCCCA 59.228 39.130 0.00 0.00 0.00 4.96
129 130 4.400529 ACTTTTGTCAATGTTTCACCCC 57.599 40.909 0.00 0.00 0.00 4.95
130 131 7.835634 TTTAACTTTTGTCAATGTTTCACCC 57.164 32.000 8.96 0.00 33.49 4.61
131 132 9.753669 CTTTTTAACTTTTGTCAATGTTTCACC 57.246 29.630 8.96 0.00 33.49 4.02
134 135 9.261318 GCACTTTTTAACTTTTGTCAATGTTTC 57.739 29.630 8.96 0.00 33.49 2.78
135 136 8.998377 AGCACTTTTTAACTTTTGTCAATGTTT 58.002 25.926 8.96 0.00 33.49 2.83
136 137 8.546597 AGCACTTTTTAACTTTTGTCAATGTT 57.453 26.923 8.76 8.76 35.17 2.71
137 138 8.442384 CAAGCACTTTTTAACTTTTGTCAATGT 58.558 29.630 0.00 0.00 0.00 2.71
138 139 7.426169 GCAAGCACTTTTTAACTTTTGTCAATG 59.574 33.333 0.00 0.00 0.00 2.82
139 140 7.118971 TGCAAGCACTTTTTAACTTTTGTCAAT 59.881 29.630 0.00 0.00 0.00 2.57
140 141 6.425114 TGCAAGCACTTTTTAACTTTTGTCAA 59.575 30.769 0.00 0.00 0.00 3.18
141 142 5.928839 TGCAAGCACTTTTTAACTTTTGTCA 59.071 32.000 0.00 0.00 0.00 3.58
142 143 6.401955 TGCAAGCACTTTTTAACTTTTGTC 57.598 33.333 0.00 0.00 0.00 3.18
143 144 6.793492 TTGCAAGCACTTTTTAACTTTTGT 57.207 29.167 0.00 0.00 0.00 2.83
144 145 8.499514 TTTTTGCAAGCACTTTTTAACTTTTG 57.500 26.923 0.00 0.00 0.00 2.44
145 146 9.689976 AATTTTTGCAAGCACTTTTTAACTTTT 57.310 22.222 0.00 0.00 0.00 2.27
146 147 9.340695 GAATTTTTGCAAGCACTTTTTAACTTT 57.659 25.926 0.00 0.00 0.00 2.66
147 148 8.510505 TGAATTTTTGCAAGCACTTTTTAACTT 58.489 25.926 0.00 0.00 0.00 2.66
148 149 8.038492 TGAATTTTTGCAAGCACTTTTTAACT 57.962 26.923 0.00 0.00 0.00 2.24
149 150 8.839947 ATGAATTTTTGCAAGCACTTTTTAAC 57.160 26.923 0.00 0.00 0.00 2.01
150 151 8.671921 TGATGAATTTTTGCAAGCACTTTTTAA 58.328 25.926 0.00 0.00 0.00 1.52
151 152 8.206325 TGATGAATTTTTGCAAGCACTTTTTA 57.794 26.923 0.00 0.00 0.00 1.52
152 153 7.086230 TGATGAATTTTTGCAAGCACTTTTT 57.914 28.000 0.00 0.00 0.00 1.94
153 154 6.680874 TGATGAATTTTTGCAAGCACTTTT 57.319 29.167 0.00 0.00 0.00 2.27
154 155 6.293735 CCATGATGAATTTTTGCAAGCACTTT 60.294 34.615 0.00 0.00 0.00 2.66
155 156 5.180492 CCATGATGAATTTTTGCAAGCACTT 59.820 36.000 0.00 0.00 0.00 3.16
156 157 4.693566 CCATGATGAATTTTTGCAAGCACT 59.306 37.500 0.00 0.00 0.00 4.40
157 158 4.691685 TCCATGATGAATTTTTGCAAGCAC 59.308 37.500 0.00 0.00 0.00 4.40
158 159 4.895961 TCCATGATGAATTTTTGCAAGCA 58.104 34.783 0.00 0.00 0.00 3.91
159 160 5.866335 TTCCATGATGAATTTTTGCAAGC 57.134 34.783 0.00 0.00 0.00 4.01
160 161 7.603963 TGATTCCATGATGAATTTTTGCAAG 57.396 32.000 0.00 0.00 35.15 4.01
161 162 9.839817 ATATGATTCCATGATGAATTTTTGCAA 57.160 25.926 0.00 0.00 35.15 4.08
162 163 9.839817 AATATGATTCCATGATGAATTTTTGCA 57.160 25.926 0.00 0.00 35.15 4.08
172 173 9.064706 GCCTTATAGGAATATGATTCCATGATG 57.935 37.037 18.17 7.11 41.00 3.07
173 174 7.935755 CGCCTTATAGGAATATGATTCCATGAT 59.064 37.037 18.17 11.36 41.00 2.45
174 175 7.092891 ACGCCTTATAGGAATATGATTCCATGA 60.093 37.037 18.17 5.72 41.00 3.07
175 176 7.011763 CACGCCTTATAGGAATATGATTCCATG 59.988 40.741 18.17 5.44 41.00 3.66
176 177 7.050377 CACGCCTTATAGGAATATGATTCCAT 58.950 38.462 18.17 12.26 41.00 3.41
177 178 6.406370 CACGCCTTATAGGAATATGATTCCA 58.594 40.000 18.17 6.85 41.00 3.53
178 179 5.817816 CCACGCCTTATAGGAATATGATTCC 59.182 44.000 9.79 9.79 37.67 3.01
179 180 5.294552 GCCACGCCTTATAGGAATATGATTC 59.705 44.000 0.00 0.00 37.67 2.52
180 181 5.186198 GCCACGCCTTATAGGAATATGATT 58.814 41.667 0.00 0.00 37.67 2.57
181 182 4.225042 TGCCACGCCTTATAGGAATATGAT 59.775 41.667 0.00 0.00 37.67 2.45
182 183 3.580895 TGCCACGCCTTATAGGAATATGA 59.419 43.478 0.00 0.00 37.67 2.15
183 184 3.937814 TGCCACGCCTTATAGGAATATG 58.062 45.455 0.00 0.00 37.67 1.78
184 185 4.634012 TTGCCACGCCTTATAGGAATAT 57.366 40.909 0.00 0.00 37.67 1.28
185 186 4.425180 TTTGCCACGCCTTATAGGAATA 57.575 40.909 0.00 0.00 37.67 1.75
186 187 3.290948 TTTGCCACGCCTTATAGGAAT 57.709 42.857 0.00 0.00 37.67 3.01
187 188 2.750712 GTTTTGCCACGCCTTATAGGAA 59.249 45.455 0.00 0.00 37.67 3.36
188 189 2.290387 TGTTTTGCCACGCCTTATAGGA 60.290 45.455 0.00 0.00 37.67 2.94
189 190 2.088423 TGTTTTGCCACGCCTTATAGG 58.912 47.619 0.00 0.00 38.80 2.57
190 191 3.840890 TTGTTTTGCCACGCCTTATAG 57.159 42.857 0.00 0.00 0.00 1.31
191 192 3.318275 TGTTTGTTTTGCCACGCCTTATA 59.682 39.130 0.00 0.00 0.00 0.98
192 193 2.101582 TGTTTGTTTTGCCACGCCTTAT 59.898 40.909 0.00 0.00 0.00 1.73
193 194 1.476891 TGTTTGTTTTGCCACGCCTTA 59.523 42.857 0.00 0.00 0.00 2.69
194 195 0.247736 TGTTTGTTTTGCCACGCCTT 59.752 45.000 0.00 0.00 0.00 4.35
195 196 0.247736 TTGTTTGTTTTGCCACGCCT 59.752 45.000 0.00 0.00 0.00 5.52
196 197 1.079503 TTTGTTTGTTTTGCCACGCC 58.920 45.000 0.00 0.00 0.00 5.68
197 198 3.181516 TGAATTTGTTTGTTTTGCCACGC 60.182 39.130 0.00 0.00 0.00 5.34
198 199 4.092675 ACTGAATTTGTTTGTTTTGCCACG 59.907 37.500 0.00 0.00 0.00 4.94
199 200 5.323105 CACTGAATTTGTTTGTTTTGCCAC 58.677 37.500 0.00 0.00 0.00 5.01
200 201 4.142730 GCACTGAATTTGTTTGTTTTGCCA 60.143 37.500 0.00 0.00 0.00 4.92
201 202 4.094739 AGCACTGAATTTGTTTGTTTTGCC 59.905 37.500 0.00 0.00 0.00 4.52
202 203 5.220557 AGCACTGAATTTGTTTGTTTTGC 57.779 34.783 0.00 0.00 0.00 3.68
203 204 6.829703 TGAAGCACTGAATTTGTTTGTTTTG 58.170 32.000 0.00 0.00 0.00 2.44
204 205 7.432350 TTGAAGCACTGAATTTGTTTGTTTT 57.568 28.000 0.00 0.00 0.00 2.43
205 206 7.432350 TTTGAAGCACTGAATTTGTTTGTTT 57.568 28.000 0.00 0.00 0.00 2.83
206 207 7.432350 TTTTGAAGCACTGAATTTGTTTGTT 57.568 28.000 0.00 0.00 0.00 2.83
207 208 7.465989 CATTTTGAAGCACTGAATTTGTTTGT 58.534 30.769 0.00 0.00 0.00 2.83
208 209 6.412653 GCATTTTGAAGCACTGAATTTGTTTG 59.587 34.615 0.00 0.00 0.00 2.93
209 210 6.316890 AGCATTTTGAAGCACTGAATTTGTTT 59.683 30.769 0.00 0.00 0.00 2.83
210 211 5.818857 AGCATTTTGAAGCACTGAATTTGTT 59.181 32.000 0.00 0.00 0.00 2.83
211 212 5.362263 AGCATTTTGAAGCACTGAATTTGT 58.638 33.333 0.00 0.00 0.00 2.83
212 213 5.917541 AGCATTTTGAAGCACTGAATTTG 57.082 34.783 0.00 0.00 0.00 2.32
213 214 6.930667 AAAGCATTTTGAAGCACTGAATTT 57.069 29.167 0.00 0.00 31.62 1.82
225 226 9.050601 AAATCGGTAATTTGAAAAGCATTTTGA 57.949 25.926 0.00 0.00 40.42 2.69
226 227 9.662545 AAAATCGGTAATTTGAAAAGCATTTTG 57.337 25.926 0.00 0.00 41.66 2.44
254 255 1.202830 TCCTAGAAGGCGTGGCAAAAA 60.203 47.619 0.00 0.00 34.61 1.94
255 256 0.398696 TCCTAGAAGGCGTGGCAAAA 59.601 50.000 0.00 0.00 34.61 2.44
256 257 0.398696 TTCCTAGAAGGCGTGGCAAA 59.601 50.000 0.00 0.00 34.61 3.68
257 258 0.618458 ATTCCTAGAAGGCGTGGCAA 59.382 50.000 0.00 0.00 34.61 4.52
258 259 0.107703 CATTCCTAGAAGGCGTGGCA 60.108 55.000 0.00 0.00 34.61 4.92
259 260 0.107654 ACATTCCTAGAAGGCGTGGC 60.108 55.000 0.00 0.00 34.61 5.01
260 261 1.207089 TCACATTCCTAGAAGGCGTGG 59.793 52.381 0.00 0.00 34.61 4.94
261 262 2.672961 TCACATTCCTAGAAGGCGTG 57.327 50.000 0.00 0.00 34.61 5.34
262 263 3.738281 CGAATCACATTCCTAGAAGGCGT 60.738 47.826 0.00 0.00 34.61 5.68
263 264 2.797156 CGAATCACATTCCTAGAAGGCG 59.203 50.000 0.00 0.00 34.61 5.52
264 265 3.557595 CACGAATCACATTCCTAGAAGGC 59.442 47.826 0.00 0.00 34.61 4.35
265 266 4.806247 GTCACGAATCACATTCCTAGAAGG 59.194 45.833 0.00 0.00 35.89 3.46
266 267 4.500837 CGTCACGAATCACATTCCTAGAAG 59.499 45.833 0.00 0.00 35.89 2.85
267 268 4.157105 TCGTCACGAATCACATTCCTAGAA 59.843 41.667 0.00 0.00 35.89 2.10
268 269 3.692593 TCGTCACGAATCACATTCCTAGA 59.307 43.478 0.00 0.00 35.89 2.43
269 270 4.028852 TCGTCACGAATCACATTCCTAG 57.971 45.455 0.00 0.00 35.89 3.02
270 271 4.443913 TTCGTCACGAATCACATTCCTA 57.556 40.909 9.01 0.00 41.05 2.94
271 272 3.313012 TTCGTCACGAATCACATTCCT 57.687 42.857 9.01 0.00 41.05 3.36
282 283 2.223363 TGCTTGCAAAAATTCGTCACGA 60.223 40.909 0.00 0.00 0.00 4.35
283 284 2.097925 GTGCTTGCAAAAATTCGTCACG 60.098 45.455 0.00 0.00 0.00 4.35
284 285 3.115554 AGTGCTTGCAAAAATTCGTCAC 58.884 40.909 0.00 1.26 0.00 3.67
285 286 3.435105 AGTGCTTGCAAAAATTCGTCA 57.565 38.095 0.00 0.00 0.00 4.35
286 287 5.881637 TTAAGTGCTTGCAAAAATTCGTC 57.118 34.783 0.00 0.00 0.00 4.20
287 288 6.312672 AGTTTTAAGTGCTTGCAAAAATTCGT 59.687 30.769 0.00 0.00 0.00 3.85
288 289 6.704819 AGTTTTAAGTGCTTGCAAAAATTCG 58.295 32.000 0.00 0.00 0.00 3.34
289 290 8.894409 AAAGTTTTAAGTGCTTGCAAAAATTC 57.106 26.923 0.00 0.00 29.83 2.17
290 291 9.127006 CAAAAGTTTTAAGTGCTTGCAAAAATT 57.873 25.926 0.00 0.00 31.70 1.82
291 292 8.296000 ACAAAAGTTTTAAGTGCTTGCAAAAAT 58.704 25.926 0.00 0.00 0.00 1.82
292 293 7.643579 ACAAAAGTTTTAAGTGCTTGCAAAAA 58.356 26.923 0.00 0.00 0.00 1.94
293 294 7.041780 TGACAAAAGTTTTAAGTGCTTGCAAAA 60.042 29.630 0.00 0.00 0.00 2.44
294 295 6.425114 TGACAAAAGTTTTAAGTGCTTGCAAA 59.575 30.769 0.00 0.00 0.00 3.68
295 296 5.928839 TGACAAAAGTTTTAAGTGCTTGCAA 59.071 32.000 0.00 0.00 0.00 4.08
296 297 5.473931 TGACAAAAGTTTTAAGTGCTTGCA 58.526 33.333 0.00 0.00 0.00 4.08
297 298 6.401955 TTGACAAAAGTTTTAAGTGCTTGC 57.598 33.333 0.00 0.00 0.00 4.01
298 299 7.962917 ACATTGACAAAAGTTTTAAGTGCTTG 58.037 30.769 0.00 0.00 0.00 4.01
299 300 8.546597 AACATTGACAAAAGTTTTAAGTGCTT 57.453 26.923 0.00 0.00 0.00 3.91
300 301 8.546597 AAACATTGACAAAAGTTTTAAGTGCT 57.453 26.923 13.35 0.00 34.43 4.40
301 302 8.655970 AGAAACATTGACAAAAGTTTTAAGTGC 58.344 29.630 17.76 8.51 37.33 4.40
303 304 9.366216 GGAGAAACATTGACAAAAGTTTTAAGT 57.634 29.630 17.76 0.00 37.33 2.24
304 305 9.364989 TGGAGAAACATTGACAAAAGTTTTAAG 57.635 29.630 17.76 0.00 37.33 1.85
305 306 9.712305 TTGGAGAAACATTGACAAAAGTTTTAA 57.288 25.926 17.76 11.17 37.33 1.52
306 307 9.712305 TTTGGAGAAACATTGACAAAAGTTTTA 57.288 25.926 17.76 7.55 37.33 1.52
307 308 8.614469 TTTGGAGAAACATTGACAAAAGTTTT 57.386 26.923 17.76 0.00 37.33 2.43
308 309 8.614469 TTTTGGAGAAACATTGACAAAAGTTT 57.386 26.923 17.09 17.09 39.28 2.66
309 310 8.614469 TTTTTGGAGAAACATTGACAAAAGTT 57.386 26.923 0.00 0.00 38.52 2.66
350 351 9.914923 GGTGAACAGTAAAATCAAAACAAAATC 57.085 29.630 0.00 0.00 0.00 2.17
351 352 8.888716 GGGTGAACAGTAAAATCAAAACAAAAT 58.111 29.630 0.00 0.00 0.00 1.82
352 353 7.063544 CGGGTGAACAGTAAAATCAAAACAAAA 59.936 33.333 0.00 0.00 0.00 2.44
353 354 6.531948 CGGGTGAACAGTAAAATCAAAACAAA 59.468 34.615 0.00 0.00 0.00 2.83
354 355 6.037098 CGGGTGAACAGTAAAATCAAAACAA 58.963 36.000 0.00 0.00 0.00 2.83
355 356 5.357314 TCGGGTGAACAGTAAAATCAAAACA 59.643 36.000 0.00 0.00 0.00 2.83
356 357 5.823353 TCGGGTGAACAGTAAAATCAAAAC 58.177 37.500 0.00 0.00 0.00 2.43
357 358 5.506649 GCTCGGGTGAACAGTAAAATCAAAA 60.507 40.000 0.00 0.00 0.00 2.44
358 359 4.023536 GCTCGGGTGAACAGTAAAATCAAA 60.024 41.667 0.00 0.00 0.00 2.69
359 360 3.500680 GCTCGGGTGAACAGTAAAATCAA 59.499 43.478 0.00 0.00 0.00 2.57
360 361 3.071479 GCTCGGGTGAACAGTAAAATCA 58.929 45.455 0.00 0.00 0.00 2.57
361 362 3.335579 AGCTCGGGTGAACAGTAAAATC 58.664 45.455 0.00 0.00 0.00 2.17
362 363 3.244422 TGAGCTCGGGTGAACAGTAAAAT 60.244 43.478 9.64 0.00 0.00 1.82
363 364 2.103432 TGAGCTCGGGTGAACAGTAAAA 59.897 45.455 9.64 0.00 0.00 1.52
364 365 1.689813 TGAGCTCGGGTGAACAGTAAA 59.310 47.619 9.64 0.00 0.00 2.01
365 366 1.334160 TGAGCTCGGGTGAACAGTAA 58.666 50.000 9.64 0.00 0.00 2.24
366 367 1.557099 ATGAGCTCGGGTGAACAGTA 58.443 50.000 9.64 0.00 0.00 2.74
367 368 0.687354 AATGAGCTCGGGTGAACAGT 59.313 50.000 9.64 0.00 0.00 3.55
368 369 1.466167 CAAATGAGCTCGGGTGAACAG 59.534 52.381 9.64 0.00 0.00 3.16
369 370 1.071542 TCAAATGAGCTCGGGTGAACA 59.928 47.619 9.64 0.00 0.00 3.18
370 371 1.734465 CTCAAATGAGCTCGGGTGAAC 59.266 52.381 9.64 0.00 35.13 3.18
371 372 2.099141 CTCAAATGAGCTCGGGTGAA 57.901 50.000 9.64 0.00 35.13 3.18
372 373 3.840831 CTCAAATGAGCTCGGGTGA 57.159 52.632 9.64 10.63 35.13 4.02
381 382 0.674581 TGCACCCGAGCTCAAATGAG 60.675 55.000 15.40 6.05 44.75 2.90
382 383 0.250684 TTGCACCCGAGCTCAAATGA 60.251 50.000 15.40 0.00 34.99 2.57
383 384 0.597568 TTTGCACCCGAGCTCAAATG 59.402 50.000 15.40 9.02 34.99 2.32
384 385 1.000274 GTTTTGCACCCGAGCTCAAAT 60.000 47.619 15.40 0.00 34.99 2.32
385 386 0.383949 GTTTTGCACCCGAGCTCAAA 59.616 50.000 15.40 3.11 34.99 2.69
386 387 0.465460 AGTTTTGCACCCGAGCTCAA 60.465 50.000 15.40 0.00 34.99 3.02
387 388 0.884704 GAGTTTTGCACCCGAGCTCA 60.885 55.000 15.40 0.00 34.99 4.26
388 389 0.603975 AGAGTTTTGCACCCGAGCTC 60.604 55.000 2.73 2.73 34.99 4.09
389 390 0.886490 CAGAGTTTTGCACCCGAGCT 60.886 55.000 0.00 0.00 34.99 4.09
390 391 1.576421 CAGAGTTTTGCACCCGAGC 59.424 57.895 0.00 0.00 0.00 5.03
391 392 1.576421 GCAGAGTTTTGCACCCGAG 59.424 57.895 0.00 0.00 43.53 4.63
392 393 3.744559 GCAGAGTTTTGCACCCGA 58.255 55.556 0.00 0.00 43.53 5.14
398 399 1.086696 TAGCGGATGCAGAGTTTTGC 58.913 50.000 0.00 0.00 46.23 3.68
399 400 3.829886 TTTAGCGGATGCAGAGTTTTG 57.170 42.857 0.00 0.00 46.23 2.44
400 401 4.035675 GCTATTTAGCGGATGCAGAGTTTT 59.964 41.667 0.00 0.00 46.23 2.43
401 402 3.561725 GCTATTTAGCGGATGCAGAGTTT 59.438 43.478 0.00 0.00 46.23 2.66
402 403 3.134458 GCTATTTAGCGGATGCAGAGTT 58.866 45.455 0.00 0.00 46.23 3.01
403 404 2.760374 GCTATTTAGCGGATGCAGAGT 58.240 47.619 0.00 0.00 46.23 3.24
413 414 5.674207 TGTTGTAACACCGGCTATTTAGCG 61.674 45.833 0.00 0.15 41.12 4.26
442 443 3.830744 ATGTAAACTATGGCGCCTACA 57.169 42.857 29.70 25.03 0.00 2.74
446 447 2.423577 CCCTATGTAAACTATGGCGCC 58.576 52.381 22.73 22.73 0.00 6.53
476 477 1.067495 GGTTCCTCTTCTCCACTCACG 60.067 57.143 0.00 0.00 0.00 4.35
478 479 1.257743 CGGTTCCTCTTCTCCACTCA 58.742 55.000 0.00 0.00 0.00 3.41
479 480 0.533032 CCGGTTCCTCTTCTCCACTC 59.467 60.000 0.00 0.00 0.00 3.51
480 481 0.114560 TCCGGTTCCTCTTCTCCACT 59.885 55.000 0.00 0.00 0.00 4.00
481 482 1.137282 GATCCGGTTCCTCTTCTCCAC 59.863 57.143 0.00 0.00 0.00 4.02
482 483 1.486211 GATCCGGTTCCTCTTCTCCA 58.514 55.000 0.00 0.00 0.00 3.86
483 484 0.753867 GGATCCGGTTCCTCTTCTCC 59.246 60.000 22.23 3.34 32.68 3.71
484 485 1.783071 AGGATCCGGTTCCTCTTCTC 58.217 55.000 25.74 1.79 42.71 2.87
491 492 2.966516 AGATGTTAGAGGATCCGGTTCC 59.033 50.000 22.05 22.05 33.66 3.62
492 493 4.099573 TGAAGATGTTAGAGGATCCGGTTC 59.900 45.833 5.98 1.67 33.66 3.62
493 494 4.030913 TGAAGATGTTAGAGGATCCGGTT 58.969 43.478 5.98 0.00 33.66 4.44
494 495 3.643237 TGAAGATGTTAGAGGATCCGGT 58.357 45.455 5.98 0.00 33.66 5.28
495 496 4.502259 CCTTGAAGATGTTAGAGGATCCGG 60.502 50.000 5.98 0.00 33.66 5.14
496 497 4.502259 CCCTTGAAGATGTTAGAGGATCCG 60.502 50.000 5.98 0.00 33.66 4.18
497 498 4.656112 TCCCTTGAAGATGTTAGAGGATCC 59.344 45.833 2.48 2.48 33.66 3.36
498 499 5.878406 TCCCTTGAAGATGTTAGAGGATC 57.122 43.478 0.00 0.00 0.00 3.36
499 500 6.185114 CATCCCTTGAAGATGTTAGAGGAT 57.815 41.667 0.00 0.00 37.05 3.24
500 501 5.620738 CATCCCTTGAAGATGTTAGAGGA 57.379 43.478 0.00 0.00 37.05 3.71
508 509 2.977914 ACGTGACATCCCTTGAAGATG 58.022 47.619 0.00 0.00 45.43 2.90
509 510 4.759782 CTTACGTGACATCCCTTGAAGAT 58.240 43.478 0.00 0.00 0.00 2.40
510 511 3.616560 GCTTACGTGACATCCCTTGAAGA 60.617 47.826 0.00 0.00 0.00 2.87
511 512 2.673368 GCTTACGTGACATCCCTTGAAG 59.327 50.000 0.00 0.00 0.00 3.02
512 513 2.301870 AGCTTACGTGACATCCCTTGAA 59.698 45.455 0.00 0.00 0.00 2.69
513 514 1.899814 AGCTTACGTGACATCCCTTGA 59.100 47.619 0.00 0.00 0.00 3.02
514 515 2.386661 AGCTTACGTGACATCCCTTG 57.613 50.000 0.00 0.00 0.00 3.61
515 516 2.829720 TGTAGCTTACGTGACATCCCTT 59.170 45.455 0.00 0.00 0.00 3.95
516 517 2.427453 CTGTAGCTTACGTGACATCCCT 59.573 50.000 0.00 0.00 0.00 4.20
517 518 2.165845 ACTGTAGCTTACGTGACATCCC 59.834 50.000 0.00 0.00 0.00 3.85
518 519 3.505464 ACTGTAGCTTACGTGACATCC 57.495 47.619 0.00 0.00 0.00 3.51
519 520 4.797349 GGTTACTGTAGCTTACGTGACATC 59.203 45.833 0.00 0.00 0.00 3.06
520 521 4.219070 TGGTTACTGTAGCTTACGTGACAT 59.781 41.667 0.00 0.00 0.00 3.06
521 522 3.569277 TGGTTACTGTAGCTTACGTGACA 59.431 43.478 0.00 0.00 0.00 3.58
522 523 4.164822 TGGTTACTGTAGCTTACGTGAC 57.835 45.455 0.00 0.00 0.00 3.67
523 524 4.460034 TCATGGTTACTGTAGCTTACGTGA 59.540 41.667 0.00 0.00 0.00 4.35
524 525 4.561606 GTCATGGTTACTGTAGCTTACGTG 59.438 45.833 0.00 0.00 0.00 4.49
525 526 4.219070 TGTCATGGTTACTGTAGCTTACGT 59.781 41.667 0.00 0.00 0.00 3.57
526 527 4.740268 TGTCATGGTTACTGTAGCTTACG 58.260 43.478 0.00 0.00 0.00 3.18
527 528 5.753921 GGATGTCATGGTTACTGTAGCTTAC 59.246 44.000 0.00 0.00 0.00 2.34
528 529 5.163343 GGGATGTCATGGTTACTGTAGCTTA 60.163 44.000 0.00 0.00 0.00 3.09
529 530 4.384208 GGGATGTCATGGTTACTGTAGCTT 60.384 45.833 0.00 0.00 0.00 3.74
530 531 3.134804 GGGATGTCATGGTTACTGTAGCT 59.865 47.826 1.71 0.00 0.00 3.32
531 532 3.134804 AGGGATGTCATGGTTACTGTAGC 59.865 47.826 0.00 0.00 0.00 3.58
532 533 5.129485 AGAAGGGATGTCATGGTTACTGTAG 59.871 44.000 0.00 0.00 0.00 2.74
533 534 5.030147 AGAAGGGATGTCATGGTTACTGTA 58.970 41.667 0.00 0.00 0.00 2.74
534 535 3.846588 AGAAGGGATGTCATGGTTACTGT 59.153 43.478 0.00 0.00 0.00 3.55
535 536 4.494091 AGAAGGGATGTCATGGTTACTG 57.506 45.455 0.00 0.00 0.00 2.74
536 537 4.536090 TGAAGAAGGGATGTCATGGTTACT 59.464 41.667 0.00 0.00 0.00 2.24
537 538 4.636206 GTGAAGAAGGGATGTCATGGTTAC 59.364 45.833 0.00 0.00 0.00 2.50
538 539 4.622933 CGTGAAGAAGGGATGTCATGGTTA 60.623 45.833 0.00 0.00 0.00 2.85
539 540 3.690460 GTGAAGAAGGGATGTCATGGTT 58.310 45.455 0.00 0.00 0.00 3.67
540 541 2.355108 CGTGAAGAAGGGATGTCATGGT 60.355 50.000 0.00 0.00 0.00 3.55
541 542 2.283298 CGTGAAGAAGGGATGTCATGG 58.717 52.381 0.00 0.00 0.00 3.66
542 543 2.674852 CACGTGAAGAAGGGATGTCATG 59.325 50.000 10.90 0.00 33.98 3.07
543 544 2.355108 CCACGTGAAGAAGGGATGTCAT 60.355 50.000 19.30 0.00 0.00 3.06
544 545 1.001974 CCACGTGAAGAAGGGATGTCA 59.998 52.381 19.30 0.00 0.00 3.58
545 546 1.275291 TCCACGTGAAGAAGGGATGTC 59.725 52.381 19.30 0.00 0.00 3.06
546 547 1.276421 CTCCACGTGAAGAAGGGATGT 59.724 52.381 19.30 0.00 0.00 3.06
547 548 1.550524 TCTCCACGTGAAGAAGGGATG 59.449 52.381 19.30 0.00 0.00 3.51
548 549 1.938585 TCTCCACGTGAAGAAGGGAT 58.061 50.000 19.30 0.00 0.00 3.85
549 550 1.618837 CTTCTCCACGTGAAGAAGGGA 59.381 52.381 30.59 11.55 42.37 4.20
550 551 1.618837 TCTTCTCCACGTGAAGAAGGG 59.381 52.381 34.93 18.48 44.51 3.95
554 555 2.417339 CGTTCTTCTCCACGTGAAGA 57.583 50.000 19.30 9.38 45.41 2.87
560 561 1.374252 CCCCACGTTCTTCTCCACG 60.374 63.158 0.00 0.00 42.29 4.94
635 639 6.402550 CCAACTGTATCTGCACTTTATCACAC 60.403 42.308 0.00 0.00 0.00 3.82
636 640 5.643348 CCAACTGTATCTGCACTTTATCACA 59.357 40.000 0.00 0.00 0.00 3.58
719 735 3.689161 AGCGCAACTATTATTTCTGCACA 59.311 39.130 11.47 0.00 33.19 4.57
734 750 3.159984 CTTCACGAGGAGCGCAAC 58.840 61.111 11.47 0.54 46.04 4.17
890 906 3.204158 TGCCCCTGCATAAAGGAGAATAA 59.796 43.478 0.00 0.00 44.23 1.40
891 907 2.782925 TGCCCCTGCATAAAGGAGAATA 59.217 45.455 0.00 0.00 44.23 1.75
905 921 8.540388 AGTATTTATATACACAGTATGCCCCTG 58.460 37.037 6.17 0.00 39.30 4.45
986 1002 4.263905 ACAGGGCCATTTCTATTGACAGAA 60.264 41.667 6.18 0.00 32.71 3.02
1019 1035 2.054799 GGGTAATGGCTATGAGGGTGA 58.945 52.381 0.00 0.00 0.00 4.02
1060 1076 2.143122 GAATTTGGCATCGGCGATAGA 58.857 47.619 23.53 6.32 42.47 1.98
1063 1079 1.267806 GATGAATTTGGCATCGGCGAT 59.732 47.619 18.14 18.14 42.47 4.58
1102 1118 0.108615 CAGTCGGGATGGTCACTCAC 60.109 60.000 0.00 0.00 0.00 3.51
1104 1120 1.153549 GCAGTCGGGATGGTCACTC 60.154 63.158 0.00 0.00 0.00 3.51
1123 1139 2.729479 CGGAGCTGAGCACCTCCAT 61.729 63.158 18.49 0.00 46.37 3.41
1192 1208 2.936928 CAGCAGTGCAGATGTCCAA 58.063 52.632 19.20 0.00 0.00 3.53
1234 1250 1.194781 TTGGCCTTCTCTTCCTCGCT 61.195 55.000 3.32 0.00 0.00 4.93
1349 1365 2.193536 GCGTGGTTGCCAAAGTCCT 61.194 57.895 0.00 0.00 34.18 3.85
1529 1545 5.979288 AGTCCCCTATATGTCGTATTGTC 57.021 43.478 0.00 0.00 0.00 3.18
1534 1550 7.179966 ACATGATTAGTCCCCTATATGTCGTA 58.820 38.462 0.00 0.00 0.00 3.43
1588 1604 7.569240 TCCACACACATGTATGTTTCCATATA 58.431 34.615 7.12 0.00 39.39 0.86
1732 1748 7.358770 AGTATATGATAGCATTGGCCTCTAG 57.641 40.000 3.32 0.00 42.56 2.43
1734 1750 5.130145 GGAGTATATGATAGCATTGGCCTCT 59.870 44.000 3.32 0.00 42.56 3.69
1757 1773 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
1761 1777 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
1790 1806 9.719355 TGCTTTGTATAGAGTCACTTATTGAAA 57.281 29.630 0.00 0.00 35.39 2.69
1791 1807 9.719355 TTGCTTTGTATAGAGTCACTTATTGAA 57.281 29.630 0.00 0.00 35.39 2.69
1792 1808 9.719355 TTTGCTTTGTATAGAGTCACTTATTGA 57.281 29.630 0.00 0.00 0.00 2.57
1797 1813 8.621532 TCATTTTGCTTTGTATAGAGTCACTT 57.378 30.769 0.00 0.00 0.00 3.16
1798 1814 7.880195 ACTCATTTTGCTTTGTATAGAGTCACT 59.120 33.333 0.00 0.00 0.00 3.41
1799 1815 7.959651 CACTCATTTTGCTTTGTATAGAGTCAC 59.040 37.037 0.00 0.00 32.03 3.67
1800 1816 7.877612 TCACTCATTTTGCTTTGTATAGAGTCA 59.122 33.333 0.00 0.00 32.03 3.41
1801 1817 8.256611 TCACTCATTTTGCTTTGTATAGAGTC 57.743 34.615 0.00 0.00 32.03 3.36
1802 1818 8.621532 TTCACTCATTTTGCTTTGTATAGAGT 57.378 30.769 0.00 0.00 34.45 3.24
1803 1819 9.713740 GATTCACTCATTTTGCTTTGTATAGAG 57.286 33.333 0.00 0.00 0.00 2.43
1804 1820 9.453572 AGATTCACTCATTTTGCTTTGTATAGA 57.546 29.630 0.00 0.00 0.00 1.98
1807 1823 9.013229 TGTAGATTCACTCATTTTGCTTTGTAT 57.987 29.630 0.00 0.00 0.00 2.29
1808 1824 8.389779 TGTAGATTCACTCATTTTGCTTTGTA 57.610 30.769 0.00 0.00 0.00 2.41
1809 1825 7.275888 TGTAGATTCACTCATTTTGCTTTGT 57.724 32.000 0.00 0.00 0.00 2.83
1810 1826 8.752766 ATTGTAGATTCACTCATTTTGCTTTG 57.247 30.769 0.00 0.00 0.00 2.77
1811 1827 8.800332 AGATTGTAGATTCACTCATTTTGCTTT 58.200 29.630 0.00 0.00 0.00 3.51
1812 1828 8.345724 AGATTGTAGATTCACTCATTTTGCTT 57.654 30.769 0.00 0.00 0.00 3.91
1813 1829 7.934855 AGATTGTAGATTCACTCATTTTGCT 57.065 32.000 0.00 0.00 0.00 3.91
1844 1860 9.533831 ACTGTCACATATGGATGTATATAGACA 57.466 33.333 7.80 2.07 44.82 3.41
1846 1862 9.190317 GGACTGTCACATATGGATGTATATAGA 57.810 37.037 10.38 0.00 44.82 1.98
1847 1863 8.971073 TGGACTGTCACATATGGATGTATATAG 58.029 37.037 10.38 0.00 44.82 1.31
1848 1864 8.893563 TGGACTGTCACATATGGATGTATATA 57.106 34.615 10.38 0.00 44.82 0.86
1849 1865 7.797121 TGGACTGTCACATATGGATGTATAT 57.203 36.000 10.38 0.00 44.82 0.86
1850 1866 7.797121 ATGGACTGTCACATATGGATGTATA 57.203 36.000 10.38 0.42 44.82 1.47
1851 1867 6.692849 ATGGACTGTCACATATGGATGTAT 57.307 37.500 10.38 0.00 44.82 2.29
1852 1868 6.499106 AATGGACTGTCACATATGGATGTA 57.501 37.500 10.38 0.00 44.82 2.29
1854 1870 7.806409 TTAAATGGACTGTCACATATGGATG 57.194 36.000 10.38 0.00 39.16 3.51
1855 1871 8.821686 TTTTAAATGGACTGTCACATATGGAT 57.178 30.769 10.38 0.00 0.00 3.41
1856 1872 8.821686 ATTTTAAATGGACTGTCACATATGGA 57.178 30.769 10.38 0.00 0.00 3.41
1857 1873 8.906867 AGATTTTAAATGGACTGTCACATATGG 58.093 33.333 10.38 0.00 0.00 2.74
1858 1874 9.941664 GAGATTTTAAATGGACTGTCACATATG 57.058 33.333 10.38 0.00 0.00 1.78
1859 1875 9.911788 AGAGATTTTAAATGGACTGTCACATAT 57.088 29.630 10.38 1.67 0.00 1.78
1861 1877 9.739276 TTAGAGATTTTAAATGGACTGTCACAT 57.261 29.630 10.38 7.89 0.00 3.21
1862 1878 9.567776 TTTAGAGATTTTAAATGGACTGTCACA 57.432 29.630 10.38 5.83 0.00 3.58
1902 1918 8.429641 TCTGTATTTTGTACTCTTTCTGTTCCT 58.570 33.333 0.00 0.00 0.00 3.36
1908 1924 7.736893 AGTGGTCTGTATTTTGTACTCTTTCT 58.263 34.615 0.00 0.00 0.00 2.52
1911 1927 8.191534 ACTAGTGGTCTGTATTTTGTACTCTT 57.808 34.615 0.00 0.00 0.00 2.85
1912 1928 7.778185 ACTAGTGGTCTGTATTTTGTACTCT 57.222 36.000 0.00 0.00 0.00 3.24
2053 2070 1.952621 TTGGGAAGGAGGGAGTACTG 58.047 55.000 0.00 0.00 0.00 2.74
2071 2088 1.080569 CTTGCGCGCCCAAGATTTT 60.081 52.632 30.77 0.00 43.79 1.82
2097 2114 3.557898 CGCCTTAGATTATGGGAGTGCAT 60.558 47.826 0.00 0.00 0.00 3.96
2101 2118 2.047061 TGCGCCTTAGATTATGGGAGT 58.953 47.619 4.18 0.00 0.00 3.85
2122 2139 3.868077 CGAGTAGGAGAGAAAAAGGCATG 59.132 47.826 0.00 0.00 0.00 4.06
2192 2209 0.689623 CAAGAGGTCCAGCCAGAGTT 59.310 55.000 0.00 0.00 40.61 3.01
2235 2252 4.508551 TCCTTACCTGACCTATCGTACA 57.491 45.455 0.00 0.00 0.00 2.90
2240 2257 5.753921 CGTTTTGATCCTTACCTGACCTATC 59.246 44.000 0.00 0.00 0.00 2.08
2261 2278 0.515564 AGCACGAAAATTAGCGCGTT 59.484 45.000 8.43 3.54 34.37 4.84
2287 2320 2.737783 CGTTTGGTTCATAGGCGTGTTA 59.262 45.455 0.00 0.00 0.00 2.41
2298 2331 1.332375 GTACTTGCAGCGTTTGGTTCA 59.668 47.619 0.00 0.00 0.00 3.18
2310 2343 2.037121 TGCAGAGTGCTAAGTACTTGCA 59.963 45.455 18.56 20.20 45.31 4.08
2347 2380 0.405585 AGTGGGTTAGTGCATGGCTT 59.594 50.000 0.00 0.00 0.00 4.35
2409 2442 3.565214 TGGTGGACATGGCCGTGT 61.565 61.111 30.75 30.75 34.39 4.49
2420 2453 3.990959 TGCATGTATACAAGTGGTGGA 57.009 42.857 10.14 1.42 0.00 4.02
2434 2467 1.176527 GCCTGTGGTTACATGCATGT 58.823 50.000 33.20 33.20 44.66 3.21
2435 2468 0.099259 CGCCTGTGGTTACATGCATG 59.901 55.000 25.09 25.09 45.28 4.06
2436 2469 1.031571 CCGCCTGTGGTTACATGCAT 61.032 55.000 0.00 0.00 45.28 3.96
2437 2470 1.673993 CCGCCTGTGGTTACATGCA 60.674 57.895 8.09 0.00 45.28 3.96
2438 2471 1.369091 CTCCGCCTGTGGTTACATGC 61.369 60.000 0.00 0.00 42.70 4.06
2439 2472 0.249120 TCTCCGCCTGTGGTTACATG 59.751 55.000 0.00 0.00 35.97 3.21
2440 2473 0.981183 TTCTCCGCCTGTGGTTACAT 59.019 50.000 0.00 0.00 35.97 2.29
2441 2474 0.034337 GTTCTCCGCCTGTGGTTACA 59.966 55.000 0.00 0.00 35.08 2.41
2442 2475 0.672711 GGTTCTCCGCCTGTGGTTAC 60.673 60.000 0.00 0.00 0.00 2.50
2443 2476 1.675219 GGTTCTCCGCCTGTGGTTA 59.325 57.895 0.00 0.00 0.00 2.85
2444 2477 2.430367 GGTTCTCCGCCTGTGGTT 59.570 61.111 0.00 0.00 0.00 3.67
2445 2478 3.637273 GGGTTCTCCGCCTGTGGT 61.637 66.667 0.00 0.00 33.83 4.16
2461 2494 2.910994 CCTACCTCGCCCTACCGG 60.911 72.222 0.00 0.00 0.00 5.28
2462 2495 2.910994 CCCTACCTCGCCCTACCG 60.911 72.222 0.00 0.00 0.00 4.02
2463 2496 3.232483 GCCCTACCTCGCCCTACC 61.232 72.222 0.00 0.00 0.00 3.18
2464 2497 3.603671 CGCCCTACCTCGCCCTAC 61.604 72.222 0.00 0.00 0.00 3.18
2479 2512 1.032114 AATCAAGGTAGGGCAAGCGC 61.032 55.000 0.00 0.00 37.44 5.92
2480 2513 1.401905 GAAATCAAGGTAGGGCAAGCG 59.598 52.381 0.00 0.00 0.00 4.68
2481 2514 2.685388 GAGAAATCAAGGTAGGGCAAGC 59.315 50.000 0.00 0.00 0.00 4.01
2482 2515 2.939103 CGAGAAATCAAGGTAGGGCAAG 59.061 50.000 0.00 0.00 0.00 4.01
2483 2516 2.355716 CCGAGAAATCAAGGTAGGGCAA 60.356 50.000 0.00 0.00 0.00 4.52
2484 2517 1.209504 CCGAGAAATCAAGGTAGGGCA 59.790 52.381 0.00 0.00 0.00 5.36
2485 2518 1.954927 CCGAGAAATCAAGGTAGGGC 58.045 55.000 0.00 0.00 0.00 5.19
2486 2519 1.486726 AGCCGAGAAATCAAGGTAGGG 59.513 52.381 0.00 0.00 0.00 3.53
2487 2520 2.990066 AGCCGAGAAATCAAGGTAGG 57.010 50.000 0.00 0.00 0.00 3.18
2488 2521 4.657436 ACTAGCCGAGAAATCAAGGTAG 57.343 45.455 0.00 0.00 0.00 3.18
2489 2522 6.726490 ATAACTAGCCGAGAAATCAAGGTA 57.274 37.500 0.00 0.00 0.00 3.08
2490 2523 3.983044 AACTAGCCGAGAAATCAAGGT 57.017 42.857 0.00 0.00 0.00 3.50
2491 2524 5.629849 CGTATAACTAGCCGAGAAATCAAGG 59.370 44.000 0.00 0.00 0.00 3.61
2492 2525 6.207213 ACGTATAACTAGCCGAGAAATCAAG 58.793 40.000 0.00 0.00 0.00 3.02
2493 2526 6.140303 ACGTATAACTAGCCGAGAAATCAA 57.860 37.500 0.00 0.00 0.00 2.57
2494 2527 5.762825 ACGTATAACTAGCCGAGAAATCA 57.237 39.130 0.00 0.00 0.00 2.57
2495 2528 8.446273 TGTATACGTATAACTAGCCGAGAAATC 58.554 37.037 16.65 0.13 0.00 2.17
2496 2529 8.327941 TGTATACGTATAACTAGCCGAGAAAT 57.672 34.615 16.65 0.00 0.00 2.17
2497 2530 7.728847 TGTATACGTATAACTAGCCGAGAAA 57.271 36.000 16.65 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.