Multiple sequence alignment - TraesCS3D01G541400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G541400 chr3D 100.000 3330 0 0 1 3330 612762465 612765794 0.000000e+00 6150.0
1 TraesCS3D01G541400 chr3D 84.448 553 70 8 1603 2142 548214434 548213885 6.330000e-147 531.0
2 TraesCS3D01G541400 chr3D 76.500 600 97 29 881 1466 615098074 615097505 1.510000e-73 287.0
3 TraesCS3D01G541400 chr2B 92.588 1673 117 7 1624 3293 225357227 225355559 0.000000e+00 2396.0
4 TraesCS3D01G541400 chr2B 87.500 128 16 0 1 128 8912790 8912663 7.440000e-32 148.0
5 TraesCS3D01G541400 chr7D 91.744 1393 102 5 1777 3167 106746978 106748359 0.000000e+00 1923.0
6 TraesCS3D01G541400 chr7D 94.531 128 7 0 1 128 422467762 422467889 7.290000e-47 198.0
7 TraesCS3D01G541400 chr7D 96.117 103 3 1 278 379 293840032 293839930 2.050000e-37 167.0
8 TraesCS3D01G541400 chr7D 82.667 150 13 8 437 585 89896374 89896511 1.620000e-23 121.0
9 TraesCS3D01G541400 chr7D 80.667 150 16 8 437 585 42051660 42051797 1.630000e-18 104.0
10 TraesCS3D01G541400 chr7D 97.436 39 1 0 3292 3330 587925386 587925348 2.140000e-07 67.6
11 TraesCS3D01G541400 chr7D 97.368 38 1 0 3293 3330 5303553 5303516 7.710000e-07 65.8
12 TraesCS3D01G541400 chr6B 90.620 1258 88 16 1601 2856 18674379 18675608 0.000000e+00 1642.0
13 TraesCS3D01G541400 chr6B 83.217 143 14 5 442 584 286580986 286580854 4.510000e-24 122.0
14 TraesCS3D01G541400 chr6B 96.970 33 1 0 3298 3330 28743239 28743271 4.640000e-04 56.5
15 TraesCS3D01G541400 chr3A 90.605 1256 84 12 1603 2856 157989015 157990238 0.000000e+00 1635.0
16 TraesCS3D01G541400 chr3A 93.333 345 22 1 2949 3293 157990234 157990577 2.960000e-140 508.0
17 TraesCS3D01G541400 chr3A 91.860 86 7 0 1383 1468 710263501 710263586 1.620000e-23 121.0
18 TraesCS3D01G541400 chr4A 90.127 1256 90 13 1603 2856 17268327 17269550 0.000000e+00 1602.0
19 TraesCS3D01G541400 chr4A 93.623 345 21 1 2949 3293 513315473 513315816 6.370000e-142 514.0
20 TraesCS3D01G541400 chr4A 94.253 87 5 0 1 87 246890913 246890999 2.080000e-27 134.0
21 TraesCS3D01G541400 chr7A 89.897 1257 92 17 1603 2856 643995211 643996435 0.000000e+00 1585.0
22 TraesCS3D01G541400 chr7A 82.836 134 13 7 454 587 643857008 643857131 9.770000e-21 111.0
23 TraesCS3D01G541400 chr7A 85.556 90 7 6 1 87 422568190 422568104 4.580000e-14 89.8
24 TraesCS3D01G541400 chr3B 93.932 857 50 2 736 1592 826261829 826260975 0.000000e+00 1293.0
25 TraesCS3D01G541400 chr3B 92.147 815 58 6 2044 2856 755564901 755565711 0.000000e+00 1146.0
26 TraesCS3D01G541400 chr3B 81.054 797 116 22 812 1585 764053290 764052506 1.320000e-168 603.0
27 TraesCS3D01G541400 chr3B 92.788 416 28 2 1603 2017 755564488 755564902 4.750000e-168 601.0
28 TraesCS3D01G541400 chr3B 91.827 416 30 4 1603 2017 61097962 61097550 8.010000e-161 577.0
29 TraesCS3D01G541400 chr3B 82.594 586 88 11 890 1466 764049551 764048971 3.830000e-139 505.0
30 TraesCS3D01G541400 chr3B 79.473 531 81 19 1093 1603 764685616 764686138 5.290000e-93 351.0
31 TraesCS3D01G541400 chr3B 89.024 246 24 3 931 1175 764685372 764685615 5.400000e-78 302.0
32 TraesCS3D01G541400 chr3B 91.304 184 10 2 590 773 826262088 826261911 2.570000e-61 246.0
33 TraesCS3D01G541400 chr3B 91.089 101 9 0 1 101 517207779 517207679 1.610000e-28 137.0
34 TraesCS3D01G541400 chr4D 92.515 815 55 5 2044 2856 446987994 446988804 0.000000e+00 1162.0
35 TraesCS3D01G541400 chr4D 92.381 420 26 4 1603 2017 446987577 446987995 7.950000e-166 593.0
36 TraesCS3D01G541400 chr4D 93.043 345 22 2 2949 3292 446988800 446989143 1.380000e-138 503.0
37 TraesCS3D01G541400 chr2A 92.393 815 56 6 2044 2856 654734905 654734095 0.000000e+00 1157.0
38 TraesCS3D01G541400 chr2A 92.162 421 31 2 1598 2017 654735323 654734904 7.950000e-166 593.0
39 TraesCS3D01G541400 chr2A 79.268 410 47 28 1 379 37890011 37889609 5.510000e-63 252.0
40 TraesCS3D01G541400 chr2A 77.778 405 50 29 1 379 427562613 427563003 2.600000e-51 213.0
41 TraesCS3D01G541400 chr2A 88.750 80 5 4 437 515 768324890 768324966 9.840000e-16 95.3
42 TraesCS3D01G541400 chr5B 92.034 703 54 2 1599 2301 532174180 532174880 0.000000e+00 987.0
43 TraesCS3D01G541400 chr5B 89.670 697 55 9 2601 3291 68899889 68899204 0.000000e+00 872.0
44 TraesCS3D01G541400 chr5B 93.276 580 37 1 1603 2182 386025588 386025011 0.000000e+00 854.0
45 TraesCS3D01G541400 chr5D 89.474 703 59 10 2595 3291 61715551 61716244 0.000000e+00 874.0
46 TraesCS3D01G541400 chr5D 81.159 414 40 24 1 379 357633553 357633963 6.980000e-77 298.0
47 TraesCS3D01G541400 chr5D 79.470 151 17 9 437 585 276580310 276580448 9.840000e-16 95.3
48 TraesCS3D01G541400 chr5A 90.139 649 53 8 2649 3291 51690685 51691328 0.000000e+00 833.0
49 TraesCS3D01G541400 chr5A 92.754 345 24 1 2949 3293 653892500 653892157 6.420000e-137 497.0
50 TraesCS3D01G541400 chr6D 91.961 311 24 1 49 358 236975557 236975247 5.100000e-118 435.0
51 TraesCS3D01G541400 chr6D 77.143 385 67 16 1 370 467548529 467548151 1.570000e-48 204.0
52 TraesCS3D01G541400 chr4B 86.350 337 34 9 44 379 525423798 525423473 1.140000e-94 357.0
53 TraesCS3D01G541400 chr4B 79.800 401 41 18 1 376 308543625 308543240 4.260000e-64 255.0
54 TraesCS3D01G541400 chr4B 83.553 152 12 8 437 586 406345961 406346101 2.700000e-26 130.0
55 TraesCS3D01G541400 chr4B 82.667 150 13 8 437 585 672446515 672446652 1.620000e-23 121.0
56 TraesCS3D01G541400 chr1A 80.049 411 42 25 1 379 522364742 522365144 5.480000e-68 268.0
57 TraesCS3D01G541400 chr1A 92.188 128 10 0 1 128 347054278 347054405 7.340000e-42 182.0
58 TraesCS3D01G541400 chr1B 79.345 397 47 24 1 367 229637128 229637519 2.570000e-61 246.0
59 TraesCS3D01G541400 chr1B 76.699 412 57 28 1 379 82613206 82613611 3.390000e-45 193.0
60 TraesCS3D01G541400 chr1B 85.629 167 21 3 222 386 286295419 286295584 4.420000e-39 172.0
61 TraesCS3D01G541400 chr6A 84.000 150 12 7 437 585 571651575 571651713 2.080000e-27 134.0
62 TraesCS3D01G541400 chr2D 84.000 150 12 7 437 586 293572391 293572528 2.080000e-27 134.0
63 TraesCS3D01G541400 chr1D 97.368 38 1 0 3293 3330 364507510 364507547 7.710000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G541400 chr3D 612762465 612765794 3329 False 6150.000000 6150 100.000000 1 3330 1 chr3D.!!$F1 3329
1 TraesCS3D01G541400 chr3D 548213885 548214434 549 True 531.000000 531 84.448000 1603 2142 1 chr3D.!!$R1 539
2 TraesCS3D01G541400 chr3D 615097505 615098074 569 True 287.000000 287 76.500000 881 1466 1 chr3D.!!$R2 585
3 TraesCS3D01G541400 chr2B 225355559 225357227 1668 True 2396.000000 2396 92.588000 1624 3293 1 chr2B.!!$R2 1669
4 TraesCS3D01G541400 chr7D 106746978 106748359 1381 False 1923.000000 1923 91.744000 1777 3167 1 chr7D.!!$F3 1390
5 TraesCS3D01G541400 chr6B 18674379 18675608 1229 False 1642.000000 1642 90.620000 1601 2856 1 chr6B.!!$F1 1255
6 TraesCS3D01G541400 chr3A 157989015 157990577 1562 False 1071.500000 1635 91.969000 1603 3293 2 chr3A.!!$F2 1690
7 TraesCS3D01G541400 chr4A 17268327 17269550 1223 False 1602.000000 1602 90.127000 1603 2856 1 chr4A.!!$F1 1253
8 TraesCS3D01G541400 chr7A 643995211 643996435 1224 False 1585.000000 1585 89.897000 1603 2856 1 chr7A.!!$F2 1253
9 TraesCS3D01G541400 chr3B 755564488 755565711 1223 False 873.500000 1146 92.467500 1603 2856 2 chr3B.!!$F1 1253
10 TraesCS3D01G541400 chr3B 826260975 826262088 1113 True 769.500000 1293 92.618000 590 1592 2 chr3B.!!$R4 1002
11 TraesCS3D01G541400 chr3B 764048971 764053290 4319 True 554.000000 603 81.824000 812 1585 2 chr3B.!!$R3 773
12 TraesCS3D01G541400 chr3B 764685372 764686138 766 False 326.500000 351 84.248500 931 1603 2 chr3B.!!$F2 672
13 TraesCS3D01G541400 chr4D 446987577 446989143 1566 False 752.666667 1162 92.646333 1603 3292 3 chr4D.!!$F1 1689
14 TraesCS3D01G541400 chr2A 654734095 654735323 1228 True 875.000000 1157 92.277500 1598 2856 2 chr2A.!!$R2 1258
15 TraesCS3D01G541400 chr5B 532174180 532174880 700 False 987.000000 987 92.034000 1599 2301 1 chr5B.!!$F1 702
16 TraesCS3D01G541400 chr5B 68899204 68899889 685 True 872.000000 872 89.670000 2601 3291 1 chr5B.!!$R1 690
17 TraesCS3D01G541400 chr5B 386025011 386025588 577 True 854.000000 854 93.276000 1603 2182 1 chr5B.!!$R2 579
18 TraesCS3D01G541400 chr5D 61715551 61716244 693 False 874.000000 874 89.474000 2595 3291 1 chr5D.!!$F1 696
19 TraesCS3D01G541400 chr5A 51690685 51691328 643 False 833.000000 833 90.139000 2649 3291 1 chr5A.!!$F1 642

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
518 519 0.032952 GTGTGCGTGTCTAAGGGTGA 59.967 55.0 0.00 0.0 0.00 4.02 F
559 560 0.102300 TGCGCGTATATGTGAGCACT 59.898 50.0 8.43 0.0 0.00 4.40 F
1596 1821 0.033208 ATCATGGCAACCGTCCCAAT 60.033 50.0 0.00 0.0 34.25 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1580 1805 0.541764 AACATTGGGACGGTTGCCAT 60.542 50.0 0.00 0.0 43.96 4.40 R
2209 3759 0.888619 TGTCTCTCGCTGTAAGGTGG 59.111 55.0 0.00 0.0 0.00 4.61 R
3281 5994 0.303493 CCCGCGTCCGTATTTTCATG 59.697 55.0 4.92 0.0 0.00 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 1.515020 CAAGAGCTGGAGACGGAGG 59.485 63.158 0.00 0.00 39.98 4.30
69 70 1.684049 AAGAGCTGGAGACGGAGGG 60.684 63.158 0.00 0.00 39.98 4.30
70 71 3.151022 GAGCTGGAGACGGAGGGG 61.151 72.222 0.00 0.00 39.98 4.79
71 72 3.663815 GAGCTGGAGACGGAGGGGA 62.664 68.421 0.00 0.00 39.98 4.81
72 73 3.151022 GCTGGAGACGGAGGGGAG 61.151 72.222 0.00 0.00 39.98 4.30
73 74 2.443016 CTGGAGACGGAGGGGAGG 60.443 72.222 0.00 0.00 39.98 4.30
74 75 4.779733 TGGAGACGGAGGGGAGGC 62.780 72.222 0.00 0.00 0.00 4.70
82 83 3.934962 GAGGGGAGGCGGCTGATC 61.935 72.222 19.63 1.17 0.00 2.92
108 109 3.318191 CAGGAGCTGGGGAAGGAG 58.682 66.667 0.00 0.00 0.00 3.69
109 110 2.041928 AGGAGCTGGGGAAGGAGG 59.958 66.667 0.00 0.00 0.00 4.30
110 111 3.093172 GGAGCTGGGGAAGGAGGG 61.093 72.222 0.00 0.00 0.00 4.30
111 112 2.041265 GAGCTGGGGAAGGAGGGA 59.959 66.667 0.00 0.00 0.00 4.20
112 113 1.616628 GAGCTGGGGAAGGAGGGAA 60.617 63.158 0.00 0.00 0.00 3.97
113 114 1.617839 AGCTGGGGAAGGAGGGAAG 60.618 63.158 0.00 0.00 0.00 3.46
114 115 2.684499 GCTGGGGAAGGAGGGAAGG 61.684 68.421 0.00 0.00 0.00 3.46
115 116 2.614013 TGGGGAAGGAGGGAAGGC 60.614 66.667 0.00 0.00 0.00 4.35
116 117 3.798511 GGGGAAGGAGGGAAGGCG 61.799 72.222 0.00 0.00 0.00 5.52
117 118 3.798511 GGGAAGGAGGGAAGGCGG 61.799 72.222 0.00 0.00 0.00 6.13
118 119 4.491409 GGAAGGAGGGAAGGCGGC 62.491 72.222 0.00 0.00 0.00 6.53
119 120 4.840005 GAAGGAGGGAAGGCGGCG 62.840 72.222 0.51 0.51 0.00 6.46
123 124 4.610714 GAGGGAAGGCGGCGGATC 62.611 72.222 9.78 3.49 0.00 3.36
134 135 2.735100 GCGGATCCGGCGAAGATC 60.735 66.667 33.98 13.09 39.57 2.75
135 136 2.429236 CGGATCCGGCGAAGATCG 60.429 66.667 26.95 6.09 40.93 3.69
136 137 2.049063 GGATCCGGCGAAGATCGG 60.049 66.667 9.30 0.00 44.61 4.18
145 146 3.900892 GAAGATCGGCGGCGAGGA 61.901 66.667 36.74 17.19 0.00 3.71
146 147 3.832720 GAAGATCGGCGGCGAGGAG 62.833 68.421 36.74 7.40 0.00 3.69
197 198 2.931921 TCGGGATCGAGGGGATGA 59.068 61.111 0.00 0.00 40.88 2.92
198 199 1.228583 TCGGGATCGAGGGGATGAG 60.229 63.158 0.00 0.00 40.88 2.90
199 200 2.279069 CGGGATCGAGGGGATGAGG 61.279 68.421 0.00 0.00 39.00 3.86
200 201 1.152226 GGGATCGAGGGGATGAGGT 60.152 63.158 0.00 0.00 34.82 3.85
201 202 1.476007 GGGATCGAGGGGATGAGGTG 61.476 65.000 0.00 0.00 34.82 4.00
202 203 1.476007 GGATCGAGGGGATGAGGTGG 61.476 65.000 0.00 0.00 34.82 4.61
203 204 0.470080 GATCGAGGGGATGAGGTGGA 60.470 60.000 0.00 0.00 34.82 4.02
204 205 0.192064 ATCGAGGGGATGAGGTGGAT 59.808 55.000 0.00 0.00 32.92 3.41
205 206 0.470080 TCGAGGGGATGAGGTGGATC 60.470 60.000 0.00 0.00 0.00 3.36
206 207 1.476007 CGAGGGGATGAGGTGGATCC 61.476 65.000 4.20 4.20 39.04 3.36
214 215 4.364318 AGGTGGATCCTGTCGAGG 57.636 61.111 14.23 0.00 46.19 4.63
228 229 3.752704 GAGGAGTCTCGGATCGGG 58.247 66.667 0.00 0.00 0.00 5.14
229 230 1.152922 GAGGAGTCTCGGATCGGGT 60.153 63.158 0.00 0.00 0.00 5.28
230 231 1.448922 GAGGAGTCTCGGATCGGGTG 61.449 65.000 0.00 0.00 0.00 4.61
231 232 2.413765 GAGTCTCGGATCGGGTGC 59.586 66.667 0.00 0.00 0.00 5.01
232 233 3.471244 GAGTCTCGGATCGGGTGCG 62.471 68.421 0.00 0.00 43.73 5.34
239 240 2.815308 GATCGGGTGCGATCCTGT 59.185 61.111 0.00 0.00 38.92 4.00
240 241 1.300233 GATCGGGTGCGATCCTGTC 60.300 63.158 0.00 0.69 38.92 3.51
249 250 3.532155 GATCCTGTCGAGGCGCCT 61.532 66.667 33.48 33.48 39.57 5.52
250 251 3.492311 GATCCTGTCGAGGCGCCTC 62.492 68.421 40.89 40.89 39.57 4.70
264 265 4.499116 CCTCGGGATCCCCTGGGT 62.499 72.222 25.73 0.00 42.67 4.51
265 266 2.844839 CTCGGGATCCCCTGGGTC 60.845 72.222 25.73 3.14 42.67 4.46
266 267 4.853142 TCGGGATCCCCTGGGTCG 62.853 72.222 25.73 11.49 42.67 4.79
281 282 3.281240 TCGGGCCGACTGTAGTTC 58.719 61.111 27.46 0.00 0.00 3.01
282 283 1.604308 TCGGGCCGACTGTAGTTCA 60.604 57.895 27.46 0.00 0.00 3.18
284 285 1.592400 CGGGCCGACTGTAGTTCAGA 61.592 60.000 24.41 0.00 46.27 3.27
285 286 0.606604 GGGCCGACTGTAGTTCAGAA 59.393 55.000 3.49 0.00 46.27 3.02
286 287 1.404315 GGGCCGACTGTAGTTCAGAAG 60.404 57.143 3.49 0.00 46.27 2.85
287 288 1.272769 GGCCGACTGTAGTTCAGAAGT 59.727 52.381 3.49 0.00 46.27 3.01
288 289 2.288886 GGCCGACTGTAGTTCAGAAGTT 60.289 50.000 3.49 0.00 46.27 2.66
289 290 2.987821 GCCGACTGTAGTTCAGAAGTTC 59.012 50.000 3.49 0.00 46.27 3.01
290 291 3.552273 GCCGACTGTAGTTCAGAAGTTCA 60.552 47.826 5.50 0.00 46.27 3.18
291 292 4.230657 CCGACTGTAGTTCAGAAGTTCAG 58.769 47.826 18.49 18.49 46.27 3.02
292 293 4.230657 CGACTGTAGTTCAGAAGTTCAGG 58.769 47.826 22.12 7.62 46.27 3.86
293 294 4.023107 CGACTGTAGTTCAGAAGTTCAGGA 60.023 45.833 22.12 0.00 46.27 3.86
294 295 5.461032 ACTGTAGTTCAGAAGTTCAGGAG 57.539 43.478 22.12 5.56 46.27 3.69
295 296 4.282195 ACTGTAGTTCAGAAGTTCAGGAGG 59.718 45.833 22.12 5.28 46.27 4.30
296 297 3.578716 TGTAGTTCAGAAGTTCAGGAGGG 59.421 47.826 5.50 0.00 0.00 4.30
297 298 1.349357 AGTTCAGAAGTTCAGGAGGGC 59.651 52.381 5.50 0.00 0.00 5.19
298 299 0.693049 TTCAGAAGTTCAGGAGGGCC 59.307 55.000 5.50 0.00 0.00 5.80
299 300 1.201429 TCAGAAGTTCAGGAGGGCCC 61.201 60.000 16.46 16.46 33.31 5.80
329 330 4.414337 CCTTATAGGGGCTGCTATGATC 57.586 50.000 0.00 0.00 0.00 2.92
330 331 3.135530 CCTTATAGGGGCTGCTATGATCC 59.864 52.174 0.00 0.00 0.00 3.36
331 332 2.349167 ATAGGGGCTGCTATGATCCA 57.651 50.000 0.00 0.00 0.00 3.41
332 333 2.116869 TAGGGGCTGCTATGATCCAA 57.883 50.000 0.00 0.00 0.00 3.53
333 334 1.225373 AGGGGCTGCTATGATCCAAA 58.775 50.000 0.00 0.00 0.00 3.28
334 335 1.785208 AGGGGCTGCTATGATCCAAAT 59.215 47.619 0.00 0.00 0.00 2.32
335 336 2.988859 AGGGGCTGCTATGATCCAAATA 59.011 45.455 0.00 0.00 0.00 1.40
336 337 3.398967 AGGGGCTGCTATGATCCAAATAA 59.601 43.478 0.00 0.00 0.00 1.40
337 338 3.507622 GGGGCTGCTATGATCCAAATAAC 59.492 47.826 0.00 0.00 0.00 1.89
338 339 4.401925 GGGCTGCTATGATCCAAATAACT 58.598 43.478 0.00 0.00 0.00 2.24
339 340 5.514834 GGGGCTGCTATGATCCAAATAACTA 60.515 44.000 0.00 0.00 0.00 2.24
340 341 6.183347 GGGCTGCTATGATCCAAATAACTAT 58.817 40.000 0.00 0.00 0.00 2.12
341 342 6.660949 GGGCTGCTATGATCCAAATAACTATT 59.339 38.462 0.00 0.00 0.00 1.73
342 343 7.148171 GGGCTGCTATGATCCAAATAACTATTC 60.148 40.741 0.00 0.00 0.00 1.75
343 344 7.609532 GGCTGCTATGATCCAAATAACTATTCT 59.390 37.037 0.00 0.00 0.00 2.40
344 345 9.658799 GCTGCTATGATCCAAATAACTATTCTA 57.341 33.333 0.00 0.00 0.00 2.10
366 367 8.497910 TCTAATCCTGGAATTAGAATAGTGCT 57.502 34.615 18.24 0.00 42.47 4.40
367 368 8.370940 TCTAATCCTGGAATTAGAATAGTGCTG 58.629 37.037 18.24 0.65 42.47 4.41
368 369 5.957771 TCCTGGAATTAGAATAGTGCTGT 57.042 39.130 0.00 0.00 0.00 4.40
369 370 5.918608 TCCTGGAATTAGAATAGTGCTGTC 58.081 41.667 0.00 0.00 0.00 3.51
370 371 5.059833 CCTGGAATTAGAATAGTGCTGTCC 58.940 45.833 0.00 0.00 0.00 4.02
371 372 5.163258 CCTGGAATTAGAATAGTGCTGTCCT 60.163 44.000 0.00 0.00 0.00 3.85
372 373 6.042093 CCTGGAATTAGAATAGTGCTGTCCTA 59.958 42.308 0.00 0.00 0.00 2.94
373 374 7.256475 CCTGGAATTAGAATAGTGCTGTCCTAT 60.256 40.741 0.00 0.00 0.00 2.57
374 375 8.721133 TGGAATTAGAATAGTGCTGTCCTATA 57.279 34.615 0.00 0.00 0.00 1.31
375 376 9.326489 TGGAATTAGAATAGTGCTGTCCTATAT 57.674 33.333 0.00 0.00 0.00 0.86
384 385 9.755122 AATAGTGCTGTCCTATATATAGACACA 57.245 33.333 19.51 18.13 32.05 3.72
385 386 7.455641 AGTGCTGTCCTATATATAGACACAC 57.544 40.000 19.51 22.64 32.52 3.82
386 387 7.004691 AGTGCTGTCCTATATATAGACACACA 58.995 38.462 27.30 21.67 33.27 3.72
387 388 7.040340 AGTGCTGTCCTATATATAGACACACAC 60.040 40.741 27.30 25.91 33.27 3.82
388 389 6.775629 TGCTGTCCTATATATAGACACACACA 59.224 38.462 19.51 15.34 32.05 3.72
389 390 7.085116 GCTGTCCTATATATAGACACACACAC 58.915 42.308 19.51 7.19 32.05 3.82
390 391 7.255486 GCTGTCCTATATATAGACACACACACA 60.255 40.741 19.51 8.56 32.05 3.72
391 392 7.937649 TGTCCTATATATAGACACACACACAC 58.062 38.462 19.51 3.22 32.05 3.82
392 393 7.558444 TGTCCTATATATAGACACACACACACA 59.442 37.037 19.51 5.22 32.05 3.72
393 394 8.577296 GTCCTATATATAGACACACACACACAT 58.423 37.037 19.51 0.00 32.05 3.21
394 395 9.143155 TCCTATATATAGACACACACACACATT 57.857 33.333 19.51 0.00 32.05 2.71
395 396 9.411801 CCTATATATAGACACACACACACATTC 57.588 37.037 19.51 0.00 32.05 2.67
396 397 7.930513 ATATATAGACACACACACACATTCG 57.069 36.000 0.00 0.00 0.00 3.34
397 398 2.309528 AGACACACACACACATTCGT 57.690 45.000 0.00 0.00 0.00 3.85
398 399 2.201732 AGACACACACACACATTCGTC 58.798 47.619 0.00 0.00 0.00 4.20
399 400 1.930503 GACACACACACACATTCGTCA 59.069 47.619 0.00 0.00 0.00 4.35
400 401 2.350192 GACACACACACACATTCGTCAA 59.650 45.455 0.00 0.00 0.00 3.18
401 402 2.095213 ACACACACACACATTCGTCAAC 59.905 45.455 0.00 0.00 0.00 3.18
402 403 2.095053 CACACACACACATTCGTCAACA 59.905 45.455 0.00 0.00 0.00 3.33
403 404 2.351418 ACACACACACATTCGTCAACAG 59.649 45.455 0.00 0.00 0.00 3.16
404 405 2.351418 CACACACACATTCGTCAACAGT 59.649 45.455 0.00 0.00 0.00 3.55
405 406 3.553917 CACACACACATTCGTCAACAGTA 59.446 43.478 0.00 0.00 0.00 2.74
406 407 3.554324 ACACACACATTCGTCAACAGTAC 59.446 43.478 0.00 0.00 0.00 2.73
407 408 3.553917 CACACACATTCGTCAACAGTACA 59.446 43.478 0.00 0.00 0.00 2.90
408 409 4.033472 CACACACATTCGTCAACAGTACAA 59.967 41.667 0.00 0.00 0.00 2.41
409 410 4.632251 ACACACATTCGTCAACAGTACAAA 59.368 37.500 0.00 0.00 0.00 2.83
410 411 5.295787 ACACACATTCGTCAACAGTACAAAT 59.704 36.000 0.00 0.00 0.00 2.32
411 412 6.480651 ACACACATTCGTCAACAGTACAAATA 59.519 34.615 0.00 0.00 0.00 1.40
412 413 6.790350 CACACATTCGTCAACAGTACAAATAC 59.210 38.462 0.00 0.00 0.00 1.89
413 414 6.480651 ACACATTCGTCAACAGTACAAATACA 59.519 34.615 0.00 0.00 33.30 2.29
414 415 7.011576 ACACATTCGTCAACAGTACAAATACAA 59.988 33.333 0.00 0.00 33.30 2.41
415 416 7.530525 CACATTCGTCAACAGTACAAATACAAG 59.469 37.037 0.00 0.00 33.30 3.16
416 417 6.533819 TTCGTCAACAGTACAAATACAAGG 57.466 37.500 0.00 0.00 33.30 3.61
417 418 5.603596 TCGTCAACAGTACAAATACAAGGT 58.396 37.500 0.00 0.00 33.30 3.50
418 419 6.747125 TCGTCAACAGTACAAATACAAGGTA 58.253 36.000 0.00 0.00 33.30 3.08
419 420 6.642131 TCGTCAACAGTACAAATACAAGGTAC 59.358 38.462 0.00 0.00 38.08 3.34
420 421 6.421501 CGTCAACAGTACAAATACAAGGTACA 59.578 38.462 0.00 0.00 39.78 2.90
421 422 7.117236 CGTCAACAGTACAAATACAAGGTACAT 59.883 37.037 0.00 0.00 39.78 2.29
422 423 9.426837 GTCAACAGTACAAATACAAGGTACATA 57.573 33.333 0.00 0.00 39.78 2.29
423 424 9.426837 TCAACAGTACAAATACAAGGTACATAC 57.573 33.333 0.00 0.00 39.78 2.39
424 425 9.431887 CAACAGTACAAATACAAGGTACATACT 57.568 33.333 0.00 0.00 39.78 2.12
453 454 9.811995 ATACAAAAGCTACGTAATATTGTCTGA 57.188 29.630 14.91 4.04 32.39 3.27
454 455 8.186178 ACAAAAGCTACGTAATATTGTCTGAG 57.814 34.615 0.00 0.00 0.00 3.35
455 456 8.033038 ACAAAAGCTACGTAATATTGTCTGAGA 58.967 33.333 0.00 0.00 0.00 3.27
456 457 9.035607 CAAAAGCTACGTAATATTGTCTGAGAT 57.964 33.333 0.00 0.00 0.00 2.75
457 458 8.581057 AAAGCTACGTAATATTGTCTGAGATG 57.419 34.615 0.00 0.00 0.00 2.90
458 459 7.511959 AGCTACGTAATATTGTCTGAGATGA 57.488 36.000 0.00 0.00 0.00 2.92
459 460 8.116651 AGCTACGTAATATTGTCTGAGATGAT 57.883 34.615 0.00 0.00 0.00 2.45
460 461 9.232473 AGCTACGTAATATTGTCTGAGATGATA 57.768 33.333 0.00 0.00 0.00 2.15
463 464 8.694975 ACGTAATATTGTCTGAGATGATATGC 57.305 34.615 0.00 0.00 0.00 3.14
464 465 7.761704 ACGTAATATTGTCTGAGATGATATGCC 59.238 37.037 0.00 0.00 0.00 4.40
465 466 7.043788 CGTAATATTGTCTGAGATGATATGCCG 60.044 40.741 0.00 0.00 0.00 5.69
466 467 3.391506 TTGTCTGAGATGATATGCCGG 57.608 47.619 0.00 0.00 0.00 6.13
467 468 1.001293 TGTCTGAGATGATATGCCGGC 59.999 52.381 22.73 22.73 0.00 6.13
468 469 1.274728 GTCTGAGATGATATGCCGGCT 59.725 52.381 29.70 15.76 0.00 5.52
469 470 1.547820 TCTGAGATGATATGCCGGCTC 59.452 52.381 29.70 17.89 0.00 4.70
470 471 1.274447 CTGAGATGATATGCCGGCTCA 59.726 52.381 29.70 23.34 0.00 4.26
471 472 1.274447 TGAGATGATATGCCGGCTCAG 59.726 52.381 29.70 0.00 0.00 3.35
472 473 0.036577 AGATGATATGCCGGCTCAGC 60.037 55.000 29.70 24.79 0.00 4.26
473 474 1.002868 ATGATATGCCGGCTCAGCC 60.003 57.895 29.70 5.22 46.75 4.85
482 483 2.124942 GGCTCAGCCTTTCGGAGG 60.125 66.667 9.09 1.83 46.69 4.30
491 492 2.691409 CCTTTCGGAGGTGCTCATAA 57.309 50.000 0.00 0.00 40.95 1.90
492 493 2.555199 CCTTTCGGAGGTGCTCATAAG 58.445 52.381 0.00 0.00 40.95 1.73
493 494 2.555199 CTTTCGGAGGTGCTCATAAGG 58.445 52.381 0.00 0.00 31.08 2.69
494 495 0.830648 TTCGGAGGTGCTCATAAGGG 59.169 55.000 0.00 0.00 31.08 3.95
495 496 0.325296 TCGGAGGTGCTCATAAGGGT 60.325 55.000 0.00 0.00 31.08 4.34
496 497 1.063492 TCGGAGGTGCTCATAAGGGTA 60.063 52.381 0.00 0.00 31.08 3.69
497 498 1.341531 CGGAGGTGCTCATAAGGGTAG 59.658 57.143 0.00 0.00 31.08 3.18
498 499 1.694696 GGAGGTGCTCATAAGGGTAGG 59.305 57.143 0.00 0.00 31.08 3.18
499 500 1.694696 GAGGTGCTCATAAGGGTAGGG 59.305 57.143 0.00 0.00 0.00 3.53
500 501 1.009675 AGGTGCTCATAAGGGTAGGGT 59.990 52.381 0.00 0.00 0.00 4.34
501 502 1.141053 GGTGCTCATAAGGGTAGGGTG 59.859 57.143 0.00 0.00 0.00 4.61
502 503 1.838077 GTGCTCATAAGGGTAGGGTGT 59.162 52.381 0.00 0.00 0.00 4.16
503 504 1.837439 TGCTCATAAGGGTAGGGTGTG 59.163 52.381 0.00 0.00 0.00 3.82
504 505 1.475213 GCTCATAAGGGTAGGGTGTGC 60.475 57.143 0.00 0.00 0.00 4.57
505 506 0.828022 TCATAAGGGTAGGGTGTGCG 59.172 55.000 0.00 0.00 0.00 5.34
506 507 0.539986 CATAAGGGTAGGGTGTGCGT 59.460 55.000 0.00 0.00 0.00 5.24
507 508 0.539986 ATAAGGGTAGGGTGTGCGTG 59.460 55.000 0.00 0.00 0.00 5.34
508 509 0.832983 TAAGGGTAGGGTGTGCGTGT 60.833 55.000 0.00 0.00 0.00 4.49
509 510 2.047560 GGGTAGGGTGTGCGTGTC 60.048 66.667 0.00 0.00 0.00 3.67
510 511 2.580601 GGGTAGGGTGTGCGTGTCT 61.581 63.158 0.00 0.00 0.00 3.41
511 512 1.252904 GGGTAGGGTGTGCGTGTCTA 61.253 60.000 0.00 0.00 0.00 2.59
512 513 0.604578 GGTAGGGTGTGCGTGTCTAA 59.395 55.000 0.00 0.00 0.00 2.10
513 514 1.403780 GGTAGGGTGTGCGTGTCTAAG 60.404 57.143 0.00 0.00 0.00 2.18
514 515 0.892755 TAGGGTGTGCGTGTCTAAGG 59.107 55.000 0.00 0.00 0.00 2.69
515 516 1.375523 GGGTGTGCGTGTCTAAGGG 60.376 63.158 0.00 0.00 0.00 3.95
516 517 1.370064 GGTGTGCGTGTCTAAGGGT 59.630 57.895 0.00 0.00 0.00 4.34
517 518 0.949105 GGTGTGCGTGTCTAAGGGTG 60.949 60.000 0.00 0.00 0.00 4.61
518 519 0.032952 GTGTGCGTGTCTAAGGGTGA 59.967 55.000 0.00 0.00 0.00 4.02
519 520 0.317160 TGTGCGTGTCTAAGGGTGAG 59.683 55.000 0.00 0.00 0.00 3.51
520 521 0.317479 GTGCGTGTCTAAGGGTGAGT 59.683 55.000 0.00 0.00 0.00 3.41
521 522 0.601558 TGCGTGTCTAAGGGTGAGTC 59.398 55.000 0.00 0.00 0.00 3.36
522 523 0.456312 GCGTGTCTAAGGGTGAGTCG 60.456 60.000 0.00 0.00 0.00 4.18
523 524 0.456312 CGTGTCTAAGGGTGAGTCGC 60.456 60.000 0.00 0.00 0.00 5.19
524 525 0.108756 GTGTCTAAGGGTGAGTCGCC 60.109 60.000 14.75 14.75 0.00 5.54
532 533 1.988406 GGTGAGTCGCCCTAAGGGT 60.988 63.158 12.00 0.00 46.51 4.34
541 542 2.622064 GCCCTAAGGGTGAGTGTATG 57.378 55.000 0.00 0.00 46.51 2.39
542 543 1.475213 GCCCTAAGGGTGAGTGTATGC 60.475 57.143 0.00 0.00 46.51 3.14
543 544 1.202533 CCCTAAGGGTGAGTGTATGCG 60.203 57.143 0.00 0.00 38.25 4.73
544 545 1.571919 CTAAGGGTGAGTGTATGCGC 58.428 55.000 0.00 0.00 0.00 6.09
545 546 0.179121 TAAGGGTGAGTGTATGCGCG 60.179 55.000 0.00 0.00 0.00 6.86
546 547 2.125673 GGGTGAGTGTATGCGCGT 60.126 61.111 8.43 7.55 0.00 6.01
547 548 1.140161 GGGTGAGTGTATGCGCGTA 59.860 57.895 8.43 4.92 0.00 4.42
548 549 0.249322 GGGTGAGTGTATGCGCGTAT 60.249 55.000 15.52 15.52 0.00 3.06
549 550 1.001048 GGGTGAGTGTATGCGCGTATA 60.001 52.381 13.13 13.13 0.00 1.47
550 551 2.352421 GGGTGAGTGTATGCGCGTATAT 60.352 50.000 19.79 4.31 0.00 0.86
551 552 2.661675 GGTGAGTGTATGCGCGTATATG 59.338 50.000 19.79 0.00 0.00 1.78
552 553 3.305964 GTGAGTGTATGCGCGTATATGT 58.694 45.455 19.79 7.78 0.00 2.29
553 554 3.119628 GTGAGTGTATGCGCGTATATGTG 59.880 47.826 19.79 0.88 0.00 3.21
554 555 3.003897 TGAGTGTATGCGCGTATATGTGA 59.996 43.478 19.79 0.00 0.00 3.58
555 556 3.565516 AGTGTATGCGCGTATATGTGAG 58.434 45.455 19.79 0.00 0.00 3.51
556 557 2.090658 GTGTATGCGCGTATATGTGAGC 59.909 50.000 19.79 6.73 0.00 4.26
557 558 2.287909 TGTATGCGCGTATATGTGAGCA 60.288 45.455 19.79 9.22 39.02 4.26
558 559 1.139989 ATGCGCGTATATGTGAGCAC 58.860 50.000 8.29 0.00 37.44 4.40
559 560 0.102300 TGCGCGTATATGTGAGCACT 59.898 50.000 8.43 0.00 0.00 4.40
560 561 1.209128 GCGCGTATATGTGAGCACTT 58.791 50.000 8.43 0.00 0.00 3.16
561 562 1.071239 GCGCGTATATGTGAGCACTTG 60.071 52.381 8.43 0.00 0.00 3.16
562 563 2.193447 CGCGTATATGTGAGCACTTGT 58.807 47.619 0.00 0.00 0.00 3.16
563 564 2.034591 CGCGTATATGTGAGCACTTGTG 60.035 50.000 0.00 0.00 0.00 3.33
564 565 2.930040 GCGTATATGTGAGCACTTGTGT 59.070 45.455 1.99 0.00 0.00 3.72
565 566 3.000322 GCGTATATGTGAGCACTTGTGTC 60.000 47.826 1.99 0.64 0.00 3.67
566 567 4.424626 CGTATATGTGAGCACTTGTGTCT 58.575 43.478 1.99 0.67 0.00 3.41
567 568 4.266265 CGTATATGTGAGCACTTGTGTCTG 59.734 45.833 1.99 0.00 0.00 3.51
568 569 2.627515 ATGTGAGCACTTGTGTCTGT 57.372 45.000 1.99 0.00 0.00 3.41
569 570 3.751479 ATGTGAGCACTTGTGTCTGTA 57.249 42.857 1.99 0.00 0.00 2.74
570 571 2.821546 TGTGAGCACTTGTGTCTGTAC 58.178 47.619 1.99 0.00 0.00 2.90
571 572 2.430694 TGTGAGCACTTGTGTCTGTACT 59.569 45.455 1.99 0.00 0.00 2.73
572 573 2.797156 GTGAGCACTTGTGTCTGTACTG 59.203 50.000 2.61 0.00 0.00 2.74
573 574 2.693074 TGAGCACTTGTGTCTGTACTGA 59.307 45.455 0.00 0.00 0.00 3.41
574 575 3.321968 TGAGCACTTGTGTCTGTACTGAT 59.678 43.478 5.69 0.00 0.00 2.90
575 576 3.657634 AGCACTTGTGTCTGTACTGATG 58.342 45.455 5.69 0.63 0.00 3.07
576 577 3.070159 AGCACTTGTGTCTGTACTGATGT 59.930 43.478 5.69 0.00 0.00 3.06
577 578 3.809832 GCACTTGTGTCTGTACTGATGTT 59.190 43.478 5.69 0.00 0.00 2.71
578 579 4.988540 GCACTTGTGTCTGTACTGATGTTA 59.011 41.667 5.69 0.00 0.00 2.41
579 580 5.465390 GCACTTGTGTCTGTACTGATGTTAA 59.535 40.000 5.69 0.07 0.00 2.01
580 581 6.018262 GCACTTGTGTCTGTACTGATGTTAAA 60.018 38.462 5.69 0.00 0.00 1.52
581 582 7.466725 GCACTTGTGTCTGTACTGATGTTAAAA 60.467 37.037 5.69 0.00 0.00 1.52
582 583 8.394877 CACTTGTGTCTGTACTGATGTTAAAAA 58.605 33.333 5.69 0.00 0.00 1.94
608 609 9.561069 AAACAGATATGAGATTATTGTACCCAC 57.439 33.333 0.00 0.00 0.00 4.61
611 612 9.730705 CAGATATGAGATTATTGTACCCACATT 57.269 33.333 0.00 0.00 33.76 2.71
620 621 9.662947 GATTATTGTACCCACATTATACCCTAC 57.337 37.037 0.00 0.00 33.76 3.18
622 623 4.233729 TGTACCCACATTATACCCTACCC 58.766 47.826 0.00 0.00 0.00 3.69
623 624 3.441505 ACCCACATTATACCCTACCCA 57.558 47.619 0.00 0.00 0.00 4.51
765 884 8.635765 AATAGCATTAAATGGATACCATCGTT 57.364 30.769 3.69 0.00 44.40 3.85
1003 1124 3.009473 AGAAGTTTGAGCCTGCCTTATGA 59.991 43.478 0.00 0.00 0.00 2.15
1044 1165 0.605589 GCCTTACGGTGCTTGTCCTT 60.606 55.000 0.00 0.00 0.00 3.36
1091 1212 4.868172 AGAAATCAATCTCCATGTCCCA 57.132 40.909 0.00 0.00 0.00 4.37
1167 1375 4.989168 GTGTGGATTTCTCTTACTGACGTT 59.011 41.667 0.00 0.00 0.00 3.99
1332 1543 7.400599 TTCATAGTCTCCTGTTTATGTACGT 57.599 36.000 0.00 0.00 0.00 3.57
1342 1553 6.588756 TCCTGTTTATGTACGTTCTGTGATTC 59.411 38.462 0.00 0.00 0.00 2.52
1359 1570 7.440255 TCTGTGATTCGTGACTATATCGAGTTA 59.560 37.037 0.00 0.00 35.13 2.24
1381 1592 5.334724 AGACTTTTCCATCATGCCAAATC 57.665 39.130 0.00 0.00 0.00 2.17
1399 1610 6.183360 GCCAAATCATGAAAAATGATGTCCAC 60.183 38.462 0.00 0.00 38.62 4.02
1512 1737 7.279313 GGAGTTTCATAACCATATACAACACGT 59.721 37.037 0.00 0.00 34.71 4.49
1553 1778 1.203025 AGGTAGTCCTTGTCGTGGAGT 60.203 52.381 0.00 0.00 42.12 3.85
1580 1805 1.078918 CAGAGGCAAGGACGCATCA 60.079 57.895 0.19 0.00 44.92 3.07
1593 1818 2.774799 GCATCATGGCAACCGTCCC 61.775 63.158 0.00 0.00 0.00 4.46
1594 1819 1.378382 CATCATGGCAACCGTCCCA 60.378 57.895 0.00 0.00 35.21 4.37
1595 1820 0.964860 CATCATGGCAACCGTCCCAA 60.965 55.000 0.00 0.00 34.25 4.12
1596 1821 0.033208 ATCATGGCAACCGTCCCAAT 60.033 50.000 0.00 0.00 34.25 3.16
1684 2328 2.048444 AGATCAAACCGCATGATGCT 57.952 45.000 16.17 0.00 42.25 3.79
1695 2450 3.136763 CGCATGATGCTTCAGTAGGAAT 58.863 45.455 16.17 0.00 42.25 3.01
1741 2497 6.205784 GTCAACAACCGATTTTCTGATTCAA 58.794 36.000 0.00 0.00 0.00 2.69
1789 3125 7.099764 AGAGTAACATCATCGAGTTCAACAAT 58.900 34.615 0.00 0.00 0.00 2.71
1818 3154 5.712917 TGAGATTGTAAAAATTAACCCGCCT 59.287 36.000 0.00 0.00 0.00 5.52
1856 3192 8.456471 CAACATCAAGTTCAATGTAGTCATGAT 58.544 33.333 0.00 0.00 38.74 2.45
1944 3303 4.349503 ACAGCGGCAATGGAGGCA 62.350 61.111 1.45 0.00 0.00 4.75
1948 3307 1.103398 AGCGGCAATGGAGGCAATAC 61.103 55.000 1.45 0.00 0.00 1.89
1997 3541 1.856265 GCTTGGTTCAACTGCCTCCG 61.856 60.000 0.00 0.00 0.00 4.63
2035 3579 9.520204 CCATATGAATTTGGTGTGAATAGTTTC 57.480 33.333 3.65 0.00 0.00 2.78
2080 3625 9.777297 AATGGTTTTGTATAGAAAATGCACTTT 57.223 25.926 10.62 0.00 0.00 2.66
2145 3695 3.861840 CTTCTAATCTTGAAGGCGGTCA 58.138 45.455 0.00 0.00 37.75 4.02
2209 3759 2.184167 CGGTCGAGCTCTCCTCCTC 61.184 68.421 12.85 0.00 37.27 3.71
2211 3761 1.077357 GTCGAGCTCTCCTCCTCCA 60.077 63.158 12.85 0.00 37.27 3.86
2216 3766 1.011595 AGCTCTCCTCCTCCACCTTA 58.988 55.000 0.00 0.00 0.00 2.69
2378 4061 2.452505 GCCCTGGCATTTGTTAACCTA 58.547 47.619 2.58 0.00 41.49 3.08
2459 4148 0.936764 CAGCGATACCAGCAGCTACG 60.937 60.000 0.00 0.00 37.94 3.51
2470 4159 3.425359 CCAGCAGCTACGAATTTCAACAG 60.425 47.826 0.00 0.00 0.00 3.16
2516 4206 5.359009 AGAGGTCACAGATATGGCAATTTTG 59.641 40.000 0.00 0.00 0.00 2.44
2563 4261 8.828688 AGAACACAAGAGGTTTACAGTTATAC 57.171 34.615 0.00 0.00 0.00 1.47
2683 4381 7.814642 AGAAGAGAAATTGCATAGTGTCTTTG 58.185 34.615 0.00 0.00 0.00 2.77
2692 4390 9.630098 AATTGCATAGTGTCTTTGTTTCTTATG 57.370 29.630 0.00 0.00 0.00 1.90
2726 4424 9.208022 TCTAATTGACAGTTCAGTGATTGTTAG 57.792 33.333 10.95 9.07 31.71 2.34
2780 4479 7.973048 ACCAAGTCATAACCTTCTAGTATCA 57.027 36.000 0.00 0.00 0.00 2.15
2910 4613 1.177256 AACGGTACAGGCTCGACACT 61.177 55.000 0.00 0.00 0.00 3.55
2960 4663 4.894114 TGGTAGTTTGGCTCCTAGAGATAC 59.106 45.833 0.00 0.00 0.00 2.24
3023 4727 6.793349 AGCACAATTTCATGATAAGAGAAGC 58.207 36.000 0.00 0.00 0.00 3.86
3075 4780 6.848562 AAATTGAGTATACCTTCCCCTGAT 57.151 37.500 0.00 0.00 0.00 2.90
3077 4782 4.552883 TGAGTATACCTTCCCCTGATCA 57.447 45.455 0.00 0.00 0.00 2.92
3296 6009 7.186128 TCAATGAAATCATGAAAATACGGACG 58.814 34.615 0.00 0.00 36.56 4.79
3297 6010 4.904116 TGAAATCATGAAAATACGGACGC 58.096 39.130 0.00 0.00 0.00 5.19
3298 6011 3.585748 AATCATGAAAATACGGACGCG 57.414 42.857 3.53 3.53 0.00 6.01
3299 6012 1.282817 TCATGAAAATACGGACGCGG 58.717 50.000 12.47 0.00 0.00 6.46
3300 6013 0.303493 CATGAAAATACGGACGCGGG 59.697 55.000 12.47 1.02 0.00 6.13
3301 6014 0.812412 ATGAAAATACGGACGCGGGG 60.812 55.000 12.47 0.58 0.00 5.73
3302 6015 1.448365 GAAAATACGGACGCGGGGT 60.448 57.895 12.47 7.69 0.00 4.95
3304 6017 0.606130 AAAATACGGACGCGGGGTTT 60.606 50.000 12.47 2.82 0.00 3.27
3305 6018 0.606130 AAATACGGACGCGGGGTTTT 60.606 50.000 12.47 3.72 0.00 2.43
3306 6019 1.300266 AATACGGACGCGGGGTTTTG 61.300 55.000 12.47 0.00 0.00 2.44
3310 6023 3.733960 GACGCGGGGTTTTGGCTC 61.734 66.667 12.47 0.00 0.00 4.70
3313 6026 2.353573 GCGGGGTTTTGGCTCCTA 59.646 61.111 0.00 0.00 0.00 2.94
3314 6027 1.749258 GCGGGGTTTTGGCTCCTAG 60.749 63.158 0.00 0.00 0.00 3.02
3315 6028 1.077716 CGGGGTTTTGGCTCCTAGG 60.078 63.158 0.82 0.82 0.00 3.02
3316 6029 1.848886 CGGGGTTTTGGCTCCTAGGT 61.849 60.000 9.08 0.00 0.00 3.08
3317 6030 0.323451 GGGGTTTTGGCTCCTAGGTG 60.323 60.000 9.08 7.68 0.00 4.00
3318 6031 0.404426 GGGTTTTGGCTCCTAGGTGT 59.596 55.000 9.08 0.00 0.00 4.16
3323 6036 5.063880 GGTTTTGGCTCCTAGGTGTATATG 58.936 45.833 9.08 0.00 0.00 1.78
3325 6038 2.970987 TGGCTCCTAGGTGTATATGCA 58.029 47.619 9.08 0.00 0.00 3.96
3326 6039 2.632996 TGGCTCCTAGGTGTATATGCAC 59.367 50.000 14.90 14.90 38.56 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 1.515020 CCTCCGTCTCCAGCTCTTG 59.485 63.158 0.00 0.00 0.00 3.02
51 52 1.684049 CCCTCCGTCTCCAGCTCTT 60.684 63.158 0.00 0.00 0.00 2.85
52 53 2.043450 CCCTCCGTCTCCAGCTCT 60.043 66.667 0.00 0.00 0.00 4.09
53 54 3.151022 CCCCTCCGTCTCCAGCTC 61.151 72.222 0.00 0.00 0.00 4.09
54 55 3.670629 CTCCCCTCCGTCTCCAGCT 62.671 68.421 0.00 0.00 0.00 4.24
55 56 3.151022 CTCCCCTCCGTCTCCAGC 61.151 72.222 0.00 0.00 0.00 4.85
56 57 2.443016 CCTCCCCTCCGTCTCCAG 60.443 72.222 0.00 0.00 0.00 3.86
57 58 4.779733 GCCTCCCCTCCGTCTCCA 62.780 72.222 0.00 0.00 0.00 3.86
65 66 3.934962 GATCAGCCGCCTCCCCTC 61.935 72.222 0.00 0.00 0.00 4.30
91 92 2.373707 CCTCCTTCCCCAGCTCCTG 61.374 68.421 0.00 0.00 0.00 3.86
92 93 2.041928 CCTCCTTCCCCAGCTCCT 59.958 66.667 0.00 0.00 0.00 3.69
93 94 3.093172 CCCTCCTTCCCCAGCTCC 61.093 72.222 0.00 0.00 0.00 4.70
94 95 1.616628 TTCCCTCCTTCCCCAGCTC 60.617 63.158 0.00 0.00 0.00 4.09
95 96 1.617839 CTTCCCTCCTTCCCCAGCT 60.618 63.158 0.00 0.00 0.00 4.24
96 97 2.684499 CCTTCCCTCCTTCCCCAGC 61.684 68.421 0.00 0.00 0.00 4.85
97 98 2.684499 GCCTTCCCTCCTTCCCCAG 61.684 68.421 0.00 0.00 0.00 4.45
98 99 2.614013 GCCTTCCCTCCTTCCCCA 60.614 66.667 0.00 0.00 0.00 4.96
99 100 3.798511 CGCCTTCCCTCCTTCCCC 61.799 72.222 0.00 0.00 0.00 4.81
100 101 3.798511 CCGCCTTCCCTCCTTCCC 61.799 72.222 0.00 0.00 0.00 3.97
101 102 4.491409 GCCGCCTTCCCTCCTTCC 62.491 72.222 0.00 0.00 0.00 3.46
102 103 4.840005 CGCCGCCTTCCCTCCTTC 62.840 72.222 0.00 0.00 0.00 3.46
106 107 4.610714 GATCCGCCGCCTTCCCTC 62.611 72.222 0.00 0.00 0.00 4.30
116 117 4.301027 ATCTTCGCCGGATCCGCC 62.301 66.667 29.12 17.95 38.24 6.13
117 118 2.735100 GATCTTCGCCGGATCCGC 60.735 66.667 29.12 21.54 38.24 5.54
118 119 2.429236 CGATCTTCGCCGGATCCG 60.429 66.667 27.65 27.65 37.02 4.18
128 129 3.832720 CTCCTCGCCGCCGATCTTC 62.833 68.421 0.00 0.00 43.47 2.87
129 130 3.905678 CTCCTCGCCGCCGATCTT 61.906 66.667 0.00 0.00 43.47 2.40
180 181 1.228583 CTCATCCCCTCGATCCCGA 60.229 63.158 0.00 0.00 43.35 5.14
181 182 2.279069 CCTCATCCCCTCGATCCCG 61.279 68.421 0.00 0.00 37.07 5.14
182 183 1.152226 ACCTCATCCCCTCGATCCC 60.152 63.158 0.00 0.00 0.00 3.85
183 184 1.476007 CCACCTCATCCCCTCGATCC 61.476 65.000 0.00 0.00 0.00 3.36
184 185 0.470080 TCCACCTCATCCCCTCGATC 60.470 60.000 0.00 0.00 0.00 3.69
185 186 0.192064 ATCCACCTCATCCCCTCGAT 59.808 55.000 0.00 0.00 0.00 3.59
186 187 0.470080 GATCCACCTCATCCCCTCGA 60.470 60.000 0.00 0.00 0.00 4.04
187 188 1.476007 GGATCCACCTCATCCCCTCG 61.476 65.000 6.95 0.00 34.68 4.63
188 189 2.457759 GGATCCACCTCATCCCCTC 58.542 63.158 6.95 0.00 34.68 4.30
189 190 4.758982 GGATCCACCTCATCCCCT 57.241 61.111 6.95 0.00 34.68 4.79
198 199 4.356979 TCCTCGACAGGATCCACC 57.643 61.111 15.82 1.04 44.75 4.61
211 212 1.152922 ACCCGATCCGAGACTCCTC 60.153 63.158 0.00 0.00 36.08 3.71
212 213 1.454111 CACCCGATCCGAGACTCCT 60.454 63.158 0.00 0.00 0.00 3.69
213 214 3.121019 CACCCGATCCGAGACTCC 58.879 66.667 0.00 0.00 0.00 3.85
214 215 2.413765 GCACCCGATCCGAGACTC 59.586 66.667 0.00 0.00 0.00 3.36
215 216 3.518998 CGCACCCGATCCGAGACT 61.519 66.667 0.00 0.00 36.29 3.24
216 217 3.515286 TCGCACCCGATCCGAGAC 61.515 66.667 0.00 0.00 38.82 3.36
224 225 3.822192 CGACAGGATCGCACCCGA 61.822 66.667 0.00 0.00 45.52 5.14
232 233 3.492311 GAGGCGCCTCGACAGGATC 62.492 68.421 38.78 15.77 43.65 3.36
233 234 3.532155 GAGGCGCCTCGACAGGAT 61.532 66.667 38.78 10.15 43.65 3.24
264 265 1.592400 CTGAACTACAGTCGGCCCGA 61.592 60.000 0.00 0.00 41.30 5.14
265 266 1.153823 CTGAACTACAGTCGGCCCG 60.154 63.158 0.00 0.00 41.30 6.13
266 267 0.606604 TTCTGAACTACAGTCGGCCC 59.393 55.000 0.00 0.00 45.86 5.80
267 268 1.272769 ACTTCTGAACTACAGTCGGCC 59.727 52.381 0.00 0.00 45.86 6.13
268 269 2.726832 ACTTCTGAACTACAGTCGGC 57.273 50.000 0.00 0.00 45.86 5.54
269 270 4.230657 CTGAACTTCTGAACTACAGTCGG 58.769 47.826 0.00 0.00 45.86 4.79
270 271 4.023107 TCCTGAACTTCTGAACTACAGTCG 60.023 45.833 0.00 0.00 45.86 4.18
271 272 5.455056 TCCTGAACTTCTGAACTACAGTC 57.545 43.478 0.00 0.00 45.86 3.51
272 273 4.282195 CCTCCTGAACTTCTGAACTACAGT 59.718 45.833 0.00 0.00 45.86 3.55
273 274 4.322349 CCCTCCTGAACTTCTGAACTACAG 60.322 50.000 0.00 0.00 46.97 2.74
274 275 3.578716 CCCTCCTGAACTTCTGAACTACA 59.421 47.826 0.00 0.00 0.00 2.74
275 276 3.617775 GCCCTCCTGAACTTCTGAACTAC 60.618 52.174 0.00 0.00 0.00 2.73
276 277 2.567615 GCCCTCCTGAACTTCTGAACTA 59.432 50.000 0.00 0.00 0.00 2.24
277 278 1.349357 GCCCTCCTGAACTTCTGAACT 59.651 52.381 0.00 0.00 0.00 3.01
278 279 1.611936 GGCCCTCCTGAACTTCTGAAC 60.612 57.143 0.00 0.00 0.00 3.18
279 280 0.693049 GGCCCTCCTGAACTTCTGAA 59.307 55.000 0.00 0.00 0.00 3.02
280 281 1.201429 GGGCCCTCCTGAACTTCTGA 61.201 60.000 17.04 0.00 0.00 3.27
281 282 1.204113 AGGGCCCTCCTGAACTTCTG 61.204 60.000 22.28 0.00 46.07 3.02
282 283 1.162085 AGGGCCCTCCTGAACTTCT 59.838 57.895 22.28 0.00 46.07 2.85
283 284 3.827752 AGGGCCCTCCTGAACTTC 58.172 61.111 22.28 0.00 46.07 3.01
297 298 0.478507 CCTATAAGGGCCCAACAGGG 59.521 60.000 27.56 16.39 46.03 4.45
308 309 3.135530 GGATCATAGCAGCCCCTATAAGG 59.864 52.174 0.00 0.00 34.30 2.69
309 310 3.776969 TGGATCATAGCAGCCCCTATAAG 59.223 47.826 0.00 0.00 0.00 1.73
310 311 3.802132 TGGATCATAGCAGCCCCTATAA 58.198 45.455 0.00 0.00 0.00 0.98
311 312 3.490060 TGGATCATAGCAGCCCCTATA 57.510 47.619 0.00 0.00 0.00 1.31
312 313 2.349167 TGGATCATAGCAGCCCCTAT 57.651 50.000 0.00 0.00 0.00 2.57
313 314 2.116869 TTGGATCATAGCAGCCCCTA 57.883 50.000 0.00 0.00 0.00 3.53
314 315 1.225373 TTTGGATCATAGCAGCCCCT 58.775 50.000 0.00 0.00 0.00 4.79
315 316 2.299326 ATTTGGATCATAGCAGCCCC 57.701 50.000 0.00 0.00 0.00 5.80
316 317 4.401925 AGTTATTTGGATCATAGCAGCCC 58.598 43.478 0.00 0.00 0.00 5.19
317 318 7.609532 AGAATAGTTATTTGGATCATAGCAGCC 59.390 37.037 0.00 0.00 0.00 4.85
318 319 8.558973 AGAATAGTTATTTGGATCATAGCAGC 57.441 34.615 0.00 0.00 0.00 5.25
341 342 8.370940 CAGCACTATTCTAATTCCAGGATTAGA 58.629 37.037 13.39 13.39 43.38 2.10
342 343 8.153550 ACAGCACTATTCTAATTCCAGGATTAG 58.846 37.037 10.35 10.35 39.75 1.73
343 344 8.034313 ACAGCACTATTCTAATTCCAGGATTA 57.966 34.615 0.00 0.00 0.00 1.75
344 345 6.904626 ACAGCACTATTCTAATTCCAGGATT 58.095 36.000 0.00 0.00 0.00 3.01
345 346 6.465035 GGACAGCACTATTCTAATTCCAGGAT 60.465 42.308 0.00 0.00 0.00 3.24
346 347 5.163301 GGACAGCACTATTCTAATTCCAGGA 60.163 44.000 0.00 0.00 0.00 3.86
347 348 5.059833 GGACAGCACTATTCTAATTCCAGG 58.940 45.833 0.00 0.00 0.00 4.45
348 349 5.923204 AGGACAGCACTATTCTAATTCCAG 58.077 41.667 0.00 0.00 0.00 3.86
349 350 5.957771 AGGACAGCACTATTCTAATTCCA 57.042 39.130 0.00 0.00 0.00 3.53
358 359 9.755122 TGTGTCTATATATAGGACAGCACTATT 57.245 33.333 17.81 0.00 33.46 1.73
359 360 9.179909 GTGTGTCTATATATAGGACAGCACTAT 57.820 37.037 24.13 0.00 35.46 2.12
360 361 8.161425 TGTGTGTCTATATATAGGACAGCACTA 58.839 37.037 26.69 20.33 32.87 2.74
361 362 7.004691 TGTGTGTCTATATATAGGACAGCACT 58.995 38.462 26.69 4.94 32.87 4.40
362 363 7.085116 GTGTGTGTCTATATATAGGACAGCAC 58.915 42.308 24.32 24.32 32.67 4.40
363 364 6.775629 TGTGTGTGTCTATATATAGGACAGCA 59.224 38.462 17.81 16.69 0.00 4.41
364 365 7.085116 GTGTGTGTGTCTATATATAGGACAGC 58.915 42.308 17.81 15.04 0.00 4.40
365 366 8.076781 GTGTGTGTGTGTCTATATATAGGACAG 58.923 40.741 17.81 0.00 0.00 3.51
366 367 7.558444 TGTGTGTGTGTGTCTATATATAGGACA 59.442 37.037 17.81 16.72 0.00 4.02
367 368 7.937649 TGTGTGTGTGTGTCTATATATAGGAC 58.062 38.462 17.81 14.79 0.00 3.85
368 369 8.706322 ATGTGTGTGTGTGTCTATATATAGGA 57.294 34.615 17.81 4.51 0.00 2.94
369 370 9.411801 GAATGTGTGTGTGTGTCTATATATAGG 57.588 37.037 17.81 2.24 0.00 2.57
370 371 9.118236 CGAATGTGTGTGTGTGTCTATATATAG 57.882 37.037 12.84 12.84 0.00 1.31
371 372 8.626526 ACGAATGTGTGTGTGTGTCTATATATA 58.373 33.333 0.00 0.00 0.00 0.86
372 373 7.489160 ACGAATGTGTGTGTGTGTCTATATAT 58.511 34.615 0.00 0.00 0.00 0.86
373 374 6.859017 ACGAATGTGTGTGTGTGTCTATATA 58.141 36.000 0.00 0.00 0.00 0.86
374 375 5.720202 ACGAATGTGTGTGTGTGTCTATAT 58.280 37.500 0.00 0.00 0.00 0.86
375 376 5.128992 ACGAATGTGTGTGTGTGTCTATA 57.871 39.130 0.00 0.00 0.00 1.31
376 377 3.987868 GACGAATGTGTGTGTGTGTCTAT 59.012 43.478 0.00 0.00 0.00 1.98
377 378 3.181485 TGACGAATGTGTGTGTGTGTCTA 60.181 43.478 0.00 0.00 0.00 2.59
378 379 2.201732 GACGAATGTGTGTGTGTGTCT 58.798 47.619 0.00 0.00 0.00 3.41
379 380 1.930503 TGACGAATGTGTGTGTGTGTC 59.069 47.619 0.00 0.00 0.00 3.67
380 381 2.017138 TGACGAATGTGTGTGTGTGT 57.983 45.000 0.00 0.00 0.00 3.72
381 382 2.095053 TGTTGACGAATGTGTGTGTGTG 59.905 45.455 0.00 0.00 0.00 3.82
382 383 2.351418 CTGTTGACGAATGTGTGTGTGT 59.649 45.455 0.00 0.00 0.00 3.72
383 384 2.351418 ACTGTTGACGAATGTGTGTGTG 59.649 45.455 0.00 0.00 0.00 3.82
384 385 2.627945 ACTGTTGACGAATGTGTGTGT 58.372 42.857 0.00 0.00 0.00 3.72
385 386 3.553917 TGTACTGTTGACGAATGTGTGTG 59.446 43.478 0.00 0.00 0.00 3.82
386 387 3.787785 TGTACTGTTGACGAATGTGTGT 58.212 40.909 0.00 0.00 0.00 3.72
387 388 4.787381 TTGTACTGTTGACGAATGTGTG 57.213 40.909 0.00 0.00 0.00 3.82
388 389 6.480651 TGTATTTGTACTGTTGACGAATGTGT 59.519 34.615 6.48 0.00 33.74 3.72
389 390 6.883129 TGTATTTGTACTGTTGACGAATGTG 58.117 36.000 6.48 0.00 33.74 3.21
390 391 7.307751 CCTTGTATTTGTACTGTTGACGAATGT 60.308 37.037 6.48 0.00 33.74 2.71
391 392 7.015289 CCTTGTATTTGTACTGTTGACGAATG 58.985 38.462 6.48 0.00 33.74 2.67
392 393 6.708949 ACCTTGTATTTGTACTGTTGACGAAT 59.291 34.615 0.00 2.63 35.51 3.34
393 394 6.050432 ACCTTGTATTTGTACTGTTGACGAA 58.950 36.000 0.00 0.00 0.00 3.85
394 395 5.603596 ACCTTGTATTTGTACTGTTGACGA 58.396 37.500 0.00 0.00 0.00 4.20
395 396 5.917541 ACCTTGTATTTGTACTGTTGACG 57.082 39.130 0.00 0.00 0.00 4.35
396 397 7.718272 TGTACCTTGTATTTGTACTGTTGAC 57.282 36.000 0.00 0.00 36.63 3.18
397 398 9.426837 GTATGTACCTTGTATTTGTACTGTTGA 57.573 33.333 0.00 0.00 36.63 3.18
398 399 9.431887 AGTATGTACCTTGTATTTGTACTGTTG 57.568 33.333 0.00 0.00 36.63 3.33
427 428 9.811995 TCAGACAATATTACGTAGCTTTTGTAT 57.188 29.630 12.56 9.05 0.00 2.29
428 429 9.297586 CTCAGACAATATTACGTAGCTTTTGTA 57.702 33.333 12.56 0.00 0.00 2.41
429 430 8.033038 TCTCAGACAATATTACGTAGCTTTTGT 58.967 33.333 12.49 12.49 0.00 2.83
430 431 8.407457 TCTCAGACAATATTACGTAGCTTTTG 57.593 34.615 0.00 2.68 0.00 2.44
431 432 9.035607 CATCTCAGACAATATTACGTAGCTTTT 57.964 33.333 0.00 0.00 0.00 2.27
432 433 8.414003 TCATCTCAGACAATATTACGTAGCTTT 58.586 33.333 0.00 0.00 0.00 3.51
433 434 7.941919 TCATCTCAGACAATATTACGTAGCTT 58.058 34.615 0.00 0.00 0.00 3.74
434 435 7.511959 TCATCTCAGACAATATTACGTAGCT 57.488 36.000 0.00 0.00 0.00 3.32
437 438 9.788960 GCATATCATCTCAGACAATATTACGTA 57.211 33.333 0.00 0.00 0.00 3.57
438 439 7.761704 GGCATATCATCTCAGACAATATTACGT 59.238 37.037 0.00 0.00 0.00 3.57
439 440 7.043788 CGGCATATCATCTCAGACAATATTACG 60.044 40.741 0.00 0.00 0.00 3.18
440 441 7.223582 CCGGCATATCATCTCAGACAATATTAC 59.776 40.741 0.00 0.00 0.00 1.89
441 442 7.267857 CCGGCATATCATCTCAGACAATATTA 58.732 38.462 0.00 0.00 0.00 0.98
442 443 6.111382 CCGGCATATCATCTCAGACAATATT 58.889 40.000 0.00 0.00 0.00 1.28
443 444 5.668471 CCGGCATATCATCTCAGACAATAT 58.332 41.667 0.00 0.00 0.00 1.28
444 445 4.621510 GCCGGCATATCATCTCAGACAATA 60.622 45.833 24.80 0.00 0.00 1.90
445 446 3.867600 GCCGGCATATCATCTCAGACAAT 60.868 47.826 24.80 0.00 0.00 2.71
446 447 2.548707 GCCGGCATATCATCTCAGACAA 60.549 50.000 24.80 0.00 0.00 3.18
447 448 1.001293 GCCGGCATATCATCTCAGACA 59.999 52.381 24.80 0.00 0.00 3.41
448 449 1.274728 AGCCGGCATATCATCTCAGAC 59.725 52.381 31.54 0.00 0.00 3.51
449 450 1.547820 GAGCCGGCATATCATCTCAGA 59.452 52.381 31.54 0.00 0.00 3.27
450 451 1.274447 TGAGCCGGCATATCATCTCAG 59.726 52.381 31.54 0.00 0.00 3.35
451 452 1.274447 CTGAGCCGGCATATCATCTCA 59.726 52.381 31.54 19.35 0.00 3.27
452 453 2.006056 GCTGAGCCGGCATATCATCTC 61.006 57.143 31.54 15.36 35.55 2.75
453 454 0.036577 GCTGAGCCGGCATATCATCT 60.037 55.000 31.54 4.27 35.55 2.90
454 455 1.023513 GGCTGAGCCGGCATATCATC 61.024 60.000 31.54 18.63 39.62 2.92
455 456 1.002868 GGCTGAGCCGGCATATCAT 60.003 57.895 31.54 6.18 39.62 2.45
456 457 2.427320 GGCTGAGCCGGCATATCA 59.573 61.111 31.54 22.44 39.62 2.15
473 474 2.555199 CCTTATGAGCACCTCCGAAAG 58.445 52.381 0.00 0.00 0.00 2.62
474 475 1.209504 CCCTTATGAGCACCTCCGAAA 59.790 52.381 0.00 0.00 0.00 3.46
475 476 0.830648 CCCTTATGAGCACCTCCGAA 59.169 55.000 0.00 0.00 0.00 4.30
476 477 0.325296 ACCCTTATGAGCACCTCCGA 60.325 55.000 0.00 0.00 0.00 4.55
477 478 1.341531 CTACCCTTATGAGCACCTCCG 59.658 57.143 0.00 0.00 0.00 4.63
478 479 1.694696 CCTACCCTTATGAGCACCTCC 59.305 57.143 0.00 0.00 0.00 4.30
479 480 1.694696 CCCTACCCTTATGAGCACCTC 59.305 57.143 0.00 0.00 0.00 3.85
480 481 1.009675 ACCCTACCCTTATGAGCACCT 59.990 52.381 0.00 0.00 0.00 4.00
481 482 1.141053 CACCCTACCCTTATGAGCACC 59.859 57.143 0.00 0.00 0.00 5.01
482 483 1.838077 ACACCCTACCCTTATGAGCAC 59.162 52.381 0.00 0.00 0.00 4.40
483 484 1.837439 CACACCCTACCCTTATGAGCA 59.163 52.381 0.00 0.00 0.00 4.26
484 485 1.475213 GCACACCCTACCCTTATGAGC 60.475 57.143 0.00 0.00 0.00 4.26
485 486 1.202533 CGCACACCCTACCCTTATGAG 60.203 57.143 0.00 0.00 0.00 2.90
486 487 0.828022 CGCACACCCTACCCTTATGA 59.172 55.000 0.00 0.00 0.00 2.15
487 488 0.539986 ACGCACACCCTACCCTTATG 59.460 55.000 0.00 0.00 0.00 1.90
488 489 0.539986 CACGCACACCCTACCCTTAT 59.460 55.000 0.00 0.00 0.00 1.73
489 490 0.832983 ACACGCACACCCTACCCTTA 60.833 55.000 0.00 0.00 0.00 2.69
490 491 2.108278 GACACGCACACCCTACCCTT 62.108 60.000 0.00 0.00 0.00 3.95
491 492 2.525877 ACACGCACACCCTACCCT 60.526 61.111 0.00 0.00 0.00 4.34
492 493 1.252904 TAGACACGCACACCCTACCC 61.253 60.000 0.00 0.00 0.00 3.69
493 494 0.604578 TTAGACACGCACACCCTACC 59.395 55.000 0.00 0.00 0.00 3.18
494 495 1.403780 CCTTAGACACGCACACCCTAC 60.404 57.143 0.00 0.00 0.00 3.18
495 496 0.892755 CCTTAGACACGCACACCCTA 59.107 55.000 0.00 0.00 0.00 3.53
496 497 1.671742 CCTTAGACACGCACACCCT 59.328 57.895 0.00 0.00 0.00 4.34
497 498 1.375523 CCCTTAGACACGCACACCC 60.376 63.158 0.00 0.00 0.00 4.61
498 499 0.949105 CACCCTTAGACACGCACACC 60.949 60.000 0.00 0.00 0.00 4.16
499 500 0.032952 TCACCCTTAGACACGCACAC 59.967 55.000 0.00 0.00 0.00 3.82
500 501 0.317160 CTCACCCTTAGACACGCACA 59.683 55.000 0.00 0.00 0.00 4.57
501 502 0.317479 ACTCACCCTTAGACACGCAC 59.683 55.000 0.00 0.00 0.00 5.34
502 503 0.601558 GACTCACCCTTAGACACGCA 59.398 55.000 0.00 0.00 0.00 5.24
503 504 0.456312 CGACTCACCCTTAGACACGC 60.456 60.000 0.00 0.00 0.00 5.34
504 505 0.456312 GCGACTCACCCTTAGACACG 60.456 60.000 0.00 0.00 0.00 4.49
505 506 0.108756 GGCGACTCACCCTTAGACAC 60.109 60.000 0.00 0.00 0.00 3.67
506 507 1.255667 GGGCGACTCACCCTTAGACA 61.256 60.000 0.00 0.00 44.68 3.41
507 508 1.516423 GGGCGACTCACCCTTAGAC 59.484 63.158 0.00 0.00 44.68 2.59
508 509 4.029472 GGGCGACTCACCCTTAGA 57.971 61.111 0.00 0.00 44.68 2.10
514 515 2.901042 CCCTTAGGGCGACTCACC 59.099 66.667 3.52 0.00 35.35 4.02
524 525 1.806623 GCGCATACACTCACCCTTAGG 60.807 57.143 0.30 0.00 40.04 2.69
525 526 1.571919 GCGCATACACTCACCCTTAG 58.428 55.000 0.30 0.00 0.00 2.18
526 527 0.179121 CGCGCATACACTCACCCTTA 60.179 55.000 8.75 0.00 0.00 2.69
527 528 1.447838 CGCGCATACACTCACCCTT 60.448 57.895 8.75 0.00 0.00 3.95
528 529 1.317431 TACGCGCATACACTCACCCT 61.317 55.000 5.73 0.00 0.00 4.34
529 530 0.249322 ATACGCGCATACACTCACCC 60.249 55.000 5.73 0.00 0.00 4.61
530 531 2.410785 TATACGCGCATACACTCACC 57.589 50.000 5.73 0.00 0.00 4.02
531 532 3.119628 CACATATACGCGCATACACTCAC 59.880 47.826 5.73 0.00 0.00 3.51
532 533 3.003897 TCACATATACGCGCATACACTCA 59.996 43.478 5.73 0.00 0.00 3.41
533 534 3.561503 TCACATATACGCGCATACACTC 58.438 45.455 5.73 0.00 0.00 3.51
534 535 3.565516 CTCACATATACGCGCATACACT 58.434 45.455 5.73 0.00 0.00 3.55
535 536 2.090658 GCTCACATATACGCGCATACAC 59.909 50.000 5.73 0.00 0.00 2.90
536 537 2.287909 TGCTCACATATACGCGCATACA 60.288 45.455 5.73 0.00 0.00 2.29
537 538 2.090658 GTGCTCACATATACGCGCATAC 59.909 50.000 5.73 0.00 33.41 2.39
538 539 2.030274 AGTGCTCACATATACGCGCATA 60.030 45.455 5.73 2.88 35.49 3.14
539 540 1.139989 GTGCTCACATATACGCGCAT 58.860 50.000 5.73 0.00 33.41 4.73
540 541 0.102300 AGTGCTCACATATACGCGCA 59.898 50.000 5.73 0.00 35.49 6.09
541 542 1.071239 CAAGTGCTCACATATACGCGC 60.071 52.381 5.73 0.00 0.00 6.86
542 543 2.034591 CACAAGTGCTCACATATACGCG 60.035 50.000 3.53 3.53 0.00 6.01
543 544 2.930040 ACACAAGTGCTCACATATACGC 59.070 45.455 0.00 0.00 0.00 4.42
544 545 4.266265 CAGACACAAGTGCTCACATATACG 59.734 45.833 0.00 0.00 0.00 3.06
545 546 5.171476 ACAGACACAAGTGCTCACATATAC 58.829 41.667 0.00 0.00 0.00 1.47
546 547 5.405935 ACAGACACAAGTGCTCACATATA 57.594 39.130 0.00 0.00 0.00 0.86
547 548 4.277515 ACAGACACAAGTGCTCACATAT 57.722 40.909 0.00 0.00 0.00 1.78
548 549 3.751479 ACAGACACAAGTGCTCACATA 57.249 42.857 0.00 0.00 0.00 2.29
549 550 2.627515 ACAGACACAAGTGCTCACAT 57.372 45.000 0.00 0.00 0.00 3.21
550 551 2.430694 AGTACAGACACAAGTGCTCACA 59.569 45.455 0.00 0.00 0.00 3.58
551 552 2.797156 CAGTACAGACACAAGTGCTCAC 59.203 50.000 0.00 0.00 0.00 3.51
552 553 2.693074 TCAGTACAGACACAAGTGCTCA 59.307 45.455 0.00 0.00 0.00 4.26
553 554 3.371102 TCAGTACAGACACAAGTGCTC 57.629 47.619 0.00 0.00 0.00 4.26
554 555 3.070159 ACATCAGTACAGACACAAGTGCT 59.930 43.478 0.00 0.00 0.00 4.40
555 556 3.393800 ACATCAGTACAGACACAAGTGC 58.606 45.455 0.00 0.00 0.00 4.40
556 557 7.477144 TTTAACATCAGTACAGACACAAGTG 57.523 36.000 0.00 0.00 0.00 3.16
557 558 8.500753 TTTTTAACATCAGTACAGACACAAGT 57.499 30.769 0.00 0.00 0.00 3.16
582 583 9.561069 GTGGGTACAATAATCTCATATCTGTTT 57.439 33.333 0.00 0.00 0.00 2.83
583 584 8.713971 TGTGGGTACAATAATCTCATATCTGTT 58.286 33.333 0.00 0.00 32.88 3.16
584 585 8.262601 TGTGGGTACAATAATCTCATATCTGT 57.737 34.615 0.00 0.00 32.88 3.41
585 586 9.730705 AATGTGGGTACAATAATCTCATATCTG 57.269 33.333 0.00 0.00 40.84 2.90
601 602 4.233729 TGGGTAGGGTATAATGTGGGTAC 58.766 47.826 0.00 0.00 0.00 3.34
606 607 4.079253 GGCAATGGGTAGGGTATAATGTG 58.921 47.826 0.00 0.00 0.00 3.21
608 609 4.380843 TGGCAATGGGTAGGGTATAATG 57.619 45.455 0.00 0.00 0.00 1.90
611 612 2.916934 GGATGGCAATGGGTAGGGTATA 59.083 50.000 0.00 0.00 0.00 1.47
620 621 2.674420 AGAATCAAGGATGGCAATGGG 58.326 47.619 0.00 0.00 0.00 4.00
622 623 5.726397 TCAAAAGAATCAAGGATGGCAATG 58.274 37.500 0.00 0.00 0.00 2.82
623 624 6.363167 TTCAAAAGAATCAAGGATGGCAAT 57.637 33.333 0.00 0.00 0.00 3.56
695 696 7.450074 ACGATGGTATCCTTTTAATGCTATGA 58.550 34.615 0.00 0.00 0.00 2.15
699 700 5.063880 GGACGATGGTATCCTTTTAATGCT 58.936 41.667 0.00 0.00 31.75 3.79
700 701 4.819630 TGGACGATGGTATCCTTTTAATGC 59.180 41.667 0.00 0.00 35.86 3.56
701 702 6.765989 TCTTGGACGATGGTATCCTTTTAATG 59.234 38.462 0.00 0.00 35.86 1.90
702 703 6.895782 TCTTGGACGATGGTATCCTTTTAAT 58.104 36.000 0.00 0.00 35.86 1.40
703 704 6.302535 TCTTGGACGATGGTATCCTTTTAA 57.697 37.500 0.00 0.00 35.86 1.52
797 916 8.959705 ATCTAATATCTACGACGATGGTATCA 57.040 34.615 0.00 0.00 0.00 2.15
897 1017 8.135382 AGCTAGAGAACATTTAGTCTTGGTTA 57.865 34.615 0.00 0.00 0.00 2.85
903 1023 9.810545 GATTTGTAGCTAGAGAACATTTAGTCT 57.189 33.333 0.00 0.00 0.00 3.24
956 1076 0.462225 TCGTTTCTGTTTGGGCGTCA 60.462 50.000 0.00 0.00 0.00 4.35
1003 1124 4.148079 CAAAGAAGAAGAGCTTTCCCCTT 58.852 43.478 0.00 0.00 36.83 3.95
1044 1165 4.037327 CGAGCATGAGTTGAATCTCCTAGA 59.963 45.833 0.00 0.00 33.93 2.43
1091 1212 8.742125 TTGGAGGGATAAGAGACACATATATT 57.258 34.615 0.00 0.00 0.00 1.28
1167 1375 2.021723 GCACCCTGTGGACAAGAACAA 61.022 52.381 0.00 0.00 33.64 2.83
1332 1543 6.260271 ACTCGATATAGTCACGAATCACAGAA 59.740 38.462 0.00 0.00 35.70 3.02
1342 1553 7.587028 GGAAAAGTCTAACTCGATATAGTCACG 59.413 40.741 0.00 0.00 0.00 4.35
1359 1570 4.773674 TGATTTGGCATGATGGAAAAGTCT 59.226 37.500 0.00 0.00 0.00 3.24
1399 1610 9.970395 ATGCATGTCACCATAATGTTTTATTAG 57.030 29.630 0.00 0.00 0.00 1.73
1580 1805 0.541764 AACATTGGGACGGTTGCCAT 60.542 50.000 0.00 0.00 43.96 4.40
1593 1818 5.255596 CGTTGCCGATCTAGTTAAACATTG 58.744 41.667 0.00 0.00 35.63 2.82
1594 1819 4.201783 GCGTTGCCGATCTAGTTAAACATT 60.202 41.667 0.00 0.00 35.63 2.71
1595 1820 3.308866 GCGTTGCCGATCTAGTTAAACAT 59.691 43.478 0.00 0.00 35.63 2.71
1596 1821 2.669434 GCGTTGCCGATCTAGTTAAACA 59.331 45.455 0.00 0.00 35.63 2.83
1684 2328 6.530120 TGTGCTAAACTTGATTCCTACTGAA 58.470 36.000 0.00 0.00 37.38 3.02
1695 2450 6.037281 TGACGTTTTACATGTGCTAAACTTGA 59.963 34.615 20.78 10.60 37.38 3.02
1741 2497 7.470192 TCTTCTGGAATGTTTATTCTTTCCCT 58.530 34.615 8.24 0.00 41.92 4.20
1818 3154 2.741759 TGATGTTGCGCTACTTCTGA 57.258 45.000 28.14 13.83 0.00 3.27
1873 3209 8.367943 TCGTAAAACTAAACTTAATGTGAGCA 57.632 30.769 0.00 0.00 0.00 4.26
1997 3541 7.013655 ACCAAATTCATATGGAATAGCACTCAC 59.986 37.037 2.13 0.00 45.46 3.51
2080 3625 8.958119 ATACATACGCTTTAGAAGGAAATCAA 57.042 30.769 0.00 0.00 0.00 2.57
2145 3695 1.910580 ATCCATCCGTTGGCGAAGGT 61.911 55.000 6.60 0.00 46.01 3.50
2209 3759 0.888619 TGTCTCTCGCTGTAAGGTGG 59.111 55.000 0.00 0.00 0.00 4.61
2211 3761 2.164624 GTCATGTCTCTCGCTGTAAGGT 59.835 50.000 0.00 0.00 0.00 3.50
2216 3766 1.671261 GCAAGTCATGTCTCTCGCTGT 60.671 52.381 0.00 0.00 0.00 4.40
2294 3977 5.074115 AGTAGCTGGTGACTCCACTATATC 58.926 45.833 0.00 0.00 41.93 1.63
2339 4022 3.119352 GGGCCTTCAGTTTAATGCAGAAG 60.119 47.826 0.84 0.00 36.38 2.85
2459 4148 4.853924 TCTTGCTTCCCTGTTGAAATTC 57.146 40.909 0.00 0.00 0.00 2.17
2470 4159 6.349300 TCTTATGTGTAGATTCTTGCTTCCC 58.651 40.000 0.00 0.00 0.00 3.97
2516 4206 8.801913 GTTCTATTACAAATGAAGCAATTGAGC 58.198 33.333 10.34 0.00 29.90 4.26
2563 4261 2.082231 CATCAGAACTGGCCAGAGTTG 58.918 52.381 39.19 28.42 36.27 3.16
2668 4366 8.165239 ACATAAGAAACAAAGACACTATGCAA 57.835 30.769 0.00 0.00 0.00 4.08
2910 4613 0.673333 CTGGATGGCACGCTGTGTTA 60.673 55.000 9.76 1.55 35.75 2.41
2993 4696 8.975410 TCTTATCATGAAATTGTGCTTTCAAG 57.025 30.769 0.00 0.07 45.45 3.02
3075 4780 7.420214 GGACTAATTTTAGGGAGATGGATGTGA 60.420 40.741 2.63 0.00 35.08 3.58
3077 4782 6.183361 GGGACTAATTTTAGGGAGATGGATGT 60.183 42.308 2.63 0.00 35.08 3.06
3121 4874 6.013725 TCCTATTTTGAGCAGGAAAGAGTACA 60.014 38.462 0.00 0.00 35.52 2.90
3181 5303 7.044249 CCTTTATCACAAATCGACAGTACGTAG 60.044 40.741 0.00 0.00 34.70 3.51
3281 5994 0.303493 CCCGCGTCCGTATTTTCATG 59.697 55.000 4.92 0.00 0.00 3.07
3293 6006 3.733960 GAGCCAAAACCCCGCGTC 61.734 66.667 4.92 0.00 0.00 5.19
3295 6008 3.615509 TAGGAGCCAAAACCCCGCG 62.616 63.158 0.00 0.00 0.00 6.46
3296 6009 1.749258 CTAGGAGCCAAAACCCCGC 60.749 63.158 0.00 0.00 0.00 6.13
3297 6010 1.077716 CCTAGGAGCCAAAACCCCG 60.078 63.158 1.05 0.00 0.00 5.73
3298 6011 0.323451 CACCTAGGAGCCAAAACCCC 60.323 60.000 17.98 0.00 0.00 4.95
3299 6012 0.404426 ACACCTAGGAGCCAAAACCC 59.596 55.000 17.98 0.00 0.00 4.11
3300 6013 3.646736 ATACACCTAGGAGCCAAAACC 57.353 47.619 17.98 0.00 0.00 3.27
3301 6014 4.515567 GCATATACACCTAGGAGCCAAAAC 59.484 45.833 17.98 0.00 0.00 2.43
3302 6015 4.165180 TGCATATACACCTAGGAGCCAAAA 59.835 41.667 17.98 0.00 0.00 2.44
3304 6017 3.071023 GTGCATATACACCTAGGAGCCAA 59.929 47.826 17.98 0.00 34.35 4.52
3305 6018 2.632996 GTGCATATACACCTAGGAGCCA 59.367 50.000 17.98 0.00 34.35 4.75
3306 6019 3.320673 GTGCATATACACCTAGGAGCC 57.679 52.381 17.98 0.00 34.35 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.