Multiple sequence alignment - TraesCS3D01G541200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G541200 chr3D 100.000 6695 0 0 789 7483 612318351 612311657 0.000000e+00 12364.0
1 TraesCS3D01G541200 chr3D 100.000 459 0 0 1 459 612319139 612318681 0.000000e+00 848.0
2 TraesCS3D01G541200 chr3D 84.483 116 10 3 1365 1472 21942279 21942164 2.860000e-19 108.0
3 TraesCS3D01G541200 chr3D 82.906 117 19 1 2121 2237 45494518 45494403 3.690000e-18 104.0
4 TraesCS3D01G541200 chr3B 93.292 3563 152 45 1245 4759 826621170 826624693 0.000000e+00 5175.0
5 TraesCS3D01G541200 chr3B 91.220 3599 179 59 3940 7477 826649005 826652527 0.000000e+00 4769.0
6 TraesCS3D01G541200 chr3B 92.126 3010 126 46 1001 3941 826645944 826648911 0.000000e+00 4143.0
7 TraesCS3D01G541200 chr3B 95.471 1126 35 9 3638 4759 826595538 826596651 0.000000e+00 1783.0
8 TraesCS3D01G541200 chr3B 95.293 1126 37 9 3638 4759 826455127 826456240 0.000000e+00 1772.0
9 TraesCS3D01G541200 chr3B 88.826 1423 86 38 805 2188 826614859 826616247 0.000000e+00 1679.0
10 TraesCS3D01G541200 chr3B 82.353 119 11 8 1363 1472 798016908 798016791 2.220000e-15 95.3
11 TraesCS3D01G541200 chr3B 92.188 64 5 0 1252 1315 798016987 798016924 2.880000e-14 91.6
12 TraesCS3D01G541200 chr6A 85.398 3527 300 97 1753 5172 592434884 592438302 0.000000e+00 3461.0
13 TraesCS3D01G541200 chr6A 89.722 467 37 10 5236 5695 592438625 592439087 3.010000e-163 586.0
14 TraesCS3D01G541200 chr6A 91.440 257 15 2 5265 5521 101615285 101615534 5.560000e-91 346.0
15 TraesCS3D01G541200 chr6A 91.051 257 16 2 5265 5521 460949716 460949965 2.590000e-89 340.0
16 TraesCS3D01G541200 chr6A 89.062 256 23 3 6237 6488 592440050 592440304 5.640000e-81 313.0
17 TraesCS3D01G541200 chr6A 90.643 171 5 1 5933 6092 590629691 590629521 4.550000e-52 217.0
18 TraesCS3D01G541200 chr6A 75.701 535 75 35 5678 6175 592439103 592439619 4.550000e-52 217.0
19 TraesCS3D01G541200 chr6A 90.058 171 6 1 5933 6092 245618839 245619009 2.120000e-50 211.0
20 TraesCS3D01G541200 chr6A 90.058 171 6 1 5933 6092 372222724 372222554 2.120000e-50 211.0
21 TraesCS3D01G541200 chr6A 90.058 171 6 1 5933 6092 377584545 377584715 2.120000e-50 211.0
22 TraesCS3D01G541200 chr6A 92.857 140 10 0 5599 5738 132972940 132973079 3.540000e-48 204.0
23 TraesCS3D01G541200 chr6A 77.008 361 36 20 6411 6726 592455567 592455925 6.010000e-36 163.0
24 TraesCS3D01G541200 chr6B 87.380 3011 250 58 2310 5243 672363261 672366218 0.000000e+00 3336.0
25 TraesCS3D01G541200 chr6B 89.201 463 43 3 5236 5695 672366442 672366900 8.420000e-159 571.0
26 TraesCS3D01G541200 chr6B 77.199 1114 134 59 5714 6733 672367080 672368167 2.380000e-149 540.0
27 TraesCS3D01G541200 chr6B 79.599 549 62 31 1715 2246 672362714 672363229 1.550000e-91 348.0
28 TraesCS3D01G541200 chr6B 83.713 307 24 10 113 417 720410879 720411161 4.450000e-67 267.0
29 TraesCS3D01G541200 chr6B 80.000 310 40 12 6320 6608 672406856 672407164 7.610000e-50 209.0
30 TraesCS3D01G541200 chr3A 92.375 2177 79 27 3346 5491 747006587 747004467 0.000000e+00 3020.0
31 TraesCS3D01G541200 chr3A 92.731 1582 72 14 5551 7106 747004226 747002662 0.000000e+00 2244.0
32 TraesCS3D01G541200 chr3A 90.570 1633 100 28 1566 3164 747008280 747006668 0.000000e+00 2113.0
33 TraesCS3D01G541200 chr3A 94.944 534 20 7 884 1414 747008872 747008343 0.000000e+00 830.0
34 TraesCS3D01G541200 chr3A 90.643 171 5 1 5933 6092 710876234 710876064 4.550000e-52 217.0
35 TraesCS3D01G541200 chr3A 88.281 128 14 1 3 130 541704251 541704125 1.300000e-32 152.0
36 TraesCS3D01G541200 chr3A 88.281 128 13 2 3 130 695948309 695948184 1.300000e-32 152.0
37 TraesCS3D01G541200 chr3A 94.253 87 5 0 3205 3291 747006672 747006586 4.710000e-27 134.0
38 TraesCS3D01G541200 chr6D 90.467 1584 119 19 3608 5172 445764259 445765829 0.000000e+00 2060.0
39 TraesCS3D01G541200 chr6D 83.194 1315 112 59 1753 2990 445762345 445763627 0.000000e+00 1103.0
40 TraesCS3D01G541200 chr6D 79.608 868 107 43 5678 6494 445766762 445767610 6.560000e-155 558.0
41 TraesCS3D01G541200 chr6D 84.314 408 33 15 1009 1414 414472098 414471720 3.300000e-98 370.0
42 TraesCS3D01G541200 chr6D 78.413 542 65 29 6274 6766 445775670 445776208 9.430000e-79 305.0
43 TraesCS3D01G541200 chr6D 83.099 284 28 11 1004 1286 448377366 448377630 2.700000e-59 241.0
44 TraesCS3D01G541200 chrUn 95.293 1126 37 9 3638 4759 330628068 330629181 0.000000e+00 1772.0
45 TraesCS3D01G541200 chrUn 94.551 679 25 7 3641 4315 459410941 459410271 0.000000e+00 1038.0
46 TraesCS3D01G541200 chrUn 97.597 541 9 2 4219 4759 423366980 423367516 0.000000e+00 924.0
47 TraesCS3D01G541200 chr7D 91.222 581 46 5 1724 2302 85357259 85357836 0.000000e+00 785.0
48 TraesCS3D01G541200 chr7D 86.890 328 37 3 106 433 419813550 419813229 5.520000e-96 363.0
49 TraesCS3D01G541200 chr7D 83.099 284 28 12 1004 1286 481608176 481607912 2.700000e-59 241.0
50 TraesCS3D01G541200 chr7D 90.598 117 11 0 1 117 104919864 104919748 1.010000e-33 156.0
51 TraesCS3D01G541200 chr2A 89.639 415 30 5 3 417 17471862 17472263 4.000000e-142 516.0
52 TraesCS3D01G541200 chr2A 87.500 88 10 1 2150 2237 758293424 758293338 4.780000e-17 100.0
53 TraesCS3D01G541200 chr1A 88.383 439 35 9 1 430 557550231 557550662 1.440000e-141 514.0
54 TraesCS3D01G541200 chr1A 87.560 418 45 3 1 417 310923351 310923762 1.890000e-130 477.0
55 TraesCS3D01G541200 chr1A 90.643 171 5 1 5933 6092 490752 490922 4.550000e-52 217.0
56 TraesCS3D01G541200 chr1A 90.058 171 6 1 5933 6092 90653420 90653250 2.120000e-50 211.0
57 TraesCS3D01G541200 chr1A 89.474 171 7 1 5933 6092 507203838 507203668 9.840000e-49 206.0
58 TraesCS3D01G541200 chr7A 90.814 381 18 3 5599 5979 72961759 72961396 1.880000e-135 494.0
59 TraesCS3D01G541200 chr5A 91.440 257 14 3 5265 5521 554435931 554435683 5.560000e-91 346.0
60 TraesCS3D01G541200 chr5A 90.661 257 17 2 5265 5521 20365011 20364762 1.200000e-87 335.0
61 TraesCS3D01G541200 chr5A 90.661 257 16 3 5265 5521 554380534 554380286 1.200000e-87 335.0
62 TraesCS3D01G541200 chr5A 90.643 171 5 1 5933 6092 114309966 114309796 4.550000e-52 217.0
63 TraesCS3D01G541200 chr5A 93.571 140 9 0 5599 5738 554380288 554380149 7.610000e-50 209.0
64 TraesCS3D01G541200 chr5A 93.571 140 9 0 5599 5738 554435685 554435546 7.610000e-50 209.0
65 TraesCS3D01G541200 chr5A 89.474 171 7 1 5933 6092 421156126 421156296 9.840000e-49 206.0
66 TraesCS3D01G541200 chr5A 88.889 171 8 1 5933 6092 421117930 421118100 4.580000e-47 200.0
67 TraesCS3D01G541200 chr5A 84.483 116 10 6 1365 1472 503649231 503649346 2.860000e-19 108.0
68 TraesCS3D01G541200 chr5A 95.082 61 3 0 1252 1312 503649148 503649208 6.180000e-16 97.1
69 TraesCS3D01G541200 chr4A 90.698 258 16 3 5265 5521 197480816 197480566 3.340000e-88 337.0
70 TraesCS3D01G541200 chr4A 94.231 104 6 0 5599 5702 197480568 197480465 7.770000e-35 159.0
71 TraesCS3D01G541200 chr5D 92.377 223 11 1 1 223 319731034 319730818 5.640000e-81 313.0
72 TraesCS3D01G541200 chr4D 84.639 319 40 4 113 430 80826143 80826453 7.290000e-80 309.0
73 TraesCS3D01G541200 chr1D 90.179 112 11 0 1 112 457142100 457141989 6.050000e-31 147.0
74 TraesCS3D01G541200 chr4B 88.793 116 12 1 1 116 520415374 520415488 2.810000e-29 141.0
75 TraesCS3D01G541200 chr5B 86.325 117 16 0 2324 2440 261255682 261255566 2.190000e-25 128.0
76 TraesCS3D01G541200 chr5B 92.188 64 5 0 1252 1315 616121197 616121134 2.880000e-14 91.6
77 TraesCS3D01G541200 chr5B 92.188 64 5 0 1252 1315 631326342 631326279 2.880000e-14 91.6
78 TraesCS3D01G541200 chr5B 80.672 119 13 7 1363 1472 616121118 616121001 4.810000e-12 84.2
79 TraesCS3D01G541200 chr5B 84.043 94 7 5 1387 1472 631326239 631326146 4.810000e-12 84.2
80 TraesCS3D01G541200 chr7B 82.906 117 19 1 2121 2237 164155052 164155167 3.690000e-18 104.0
81 TraesCS3D01G541200 chr7B 95.082 61 3 0 1252 1312 481551383 481551323 6.180000e-16 97.1
82 TraesCS3D01G541200 chr7B 81.513 119 12 8 1363 1472 48226912 48226795 1.030000e-13 89.8
83 TraesCS3D01G541200 chr1B 81.513 119 12 8 1363 1472 677151421 677151538 1.030000e-13 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G541200 chr3D 612311657 612319139 7482 True 6606.000000 12364 100.00000 1 7483 2 chr3D.!!$R3 7482
1 TraesCS3D01G541200 chr3B 826621170 826624693 3523 False 5175.000000 5175 93.29200 1245 4759 1 chr3B.!!$F4 3514
2 TraesCS3D01G541200 chr3B 826645944 826652527 6583 False 4456.000000 4769 91.67300 1001 7477 2 chr3B.!!$F5 6476
3 TraesCS3D01G541200 chr3B 826595538 826596651 1113 False 1783.000000 1783 95.47100 3638 4759 1 chr3B.!!$F2 1121
4 TraesCS3D01G541200 chr3B 826455127 826456240 1113 False 1772.000000 1772 95.29300 3638 4759 1 chr3B.!!$F1 1121
5 TraesCS3D01G541200 chr3B 826614859 826616247 1388 False 1679.000000 1679 88.82600 805 2188 1 chr3B.!!$F3 1383
6 TraesCS3D01G541200 chr6A 592434884 592440304 5420 False 1144.250000 3461 84.97075 1753 6488 4 chr6A.!!$F7 4735
7 TraesCS3D01G541200 chr6B 672362714 672368167 5453 False 1198.750000 3336 83.34475 1715 6733 4 chr6B.!!$F3 5018
8 TraesCS3D01G541200 chr3A 747002662 747008872 6210 True 1668.200000 3020 92.97460 884 7106 5 chr3A.!!$R4 6222
9 TraesCS3D01G541200 chr6D 445762345 445767610 5265 False 1240.333333 2060 84.42300 1753 6494 3 chr6D.!!$F3 4741
10 TraesCS3D01G541200 chr6D 445775670 445776208 538 False 305.000000 305 78.41300 6274 6766 1 chr6D.!!$F1 492
11 TraesCS3D01G541200 chrUn 330628068 330629181 1113 False 1772.000000 1772 95.29300 3638 4759 1 chrUn.!!$F1 1121
12 TraesCS3D01G541200 chrUn 459410271 459410941 670 True 1038.000000 1038 94.55100 3641 4315 1 chrUn.!!$R1 674
13 TraesCS3D01G541200 chrUn 423366980 423367516 536 False 924.000000 924 97.59700 4219 4759 1 chrUn.!!$F2 540
14 TraesCS3D01G541200 chr7D 85357259 85357836 577 False 785.000000 785 91.22200 1724 2302 1 chr7D.!!$F1 578

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
185 186 0.036010 GCCTGAAGCTGAAGGTAGCA 60.036 55.000 14.73 0.0 46.07 3.49 F
237 238 0.038159 CGGGATGAGCCGAATAGGAC 60.038 60.000 0.00 0.0 45.00 3.85 F
1436 1488 0.179000 CCAGCACGCCCTCTTAATCT 59.821 55.000 0.00 0.0 0.00 2.40 F
2461 2594 0.242017 GGTGCTTCCACTGTTGCATC 59.758 55.000 0.00 0.0 41.75 3.91 F
2918 3104 3.823281 TCACAAGGTTTGTCCGACTTA 57.177 42.857 0.00 0.0 43.23 2.24 F
4403 4831 2.271800 GTCTTACGGCACAGATGGAAG 58.728 52.381 0.00 0.0 0.00 3.46 F
5172 5624 1.067142 CAGGCGCTCCACAACTTACTA 60.067 52.381 7.64 0.0 33.74 1.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1720 1790 0.034896 AAACACCTACACCTCCAGCG 59.965 55.000 0.00 0.00 0.00 5.18 R
1978 2061 1.661341 CAGCTAACCTGTGCTCATCC 58.339 55.000 0.00 0.00 37.44 3.51 R
3376 3674 1.308998 ACACTAGCAACCACAAGTGC 58.691 50.000 1.43 0.00 42.44 4.40 R
3962 4386 3.742433 ATCCATCTCCTTAGACTTGCG 57.258 47.619 0.00 0.00 33.57 4.85 R
4668 5104 0.535335 GGCCCTAGACATCGTTGACA 59.465 55.000 0.00 0.00 0.00 3.58 R
5513 6430 0.247460 GGGTCCAGGTACGTACAACC 59.753 60.000 26.02 23.19 37.27 3.77 R
7150 8734 1.379146 GTCCCAACCTTCTCCCCAC 59.621 63.158 0.00 0.00 0.00 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.758327 ACGCACTAGATCCGGGCA 60.758 61.111 0.00 0.00 0.00 5.36
18 19 2.028190 CGCACTAGATCCGGGCAG 59.972 66.667 0.00 0.00 0.00 4.85
19 20 2.490148 CGCACTAGATCCGGGCAGA 61.490 63.158 0.00 0.00 0.00 4.26
20 21 1.365633 GCACTAGATCCGGGCAGAG 59.634 63.158 0.00 0.00 0.00 3.35
21 22 1.109920 GCACTAGATCCGGGCAGAGA 61.110 60.000 0.00 0.00 0.00 3.10
22 23 1.626686 CACTAGATCCGGGCAGAGAT 58.373 55.000 0.00 0.00 0.00 2.75
23 24 1.543802 CACTAGATCCGGGCAGAGATC 59.456 57.143 0.00 0.00 39.38 2.75
24 25 1.181786 CTAGATCCGGGCAGAGATCC 58.818 60.000 0.00 0.00 39.83 3.36
25 26 0.251832 TAGATCCGGGCAGAGATCCC 60.252 60.000 0.00 0.00 39.83 3.85
26 27 1.535202 GATCCGGGCAGAGATCCCT 60.535 63.158 0.00 0.00 41.69 4.20
27 28 1.825281 GATCCGGGCAGAGATCCCTG 61.825 65.000 0.00 0.00 41.69 4.45
28 29 3.554342 CCGGGCAGAGATCCCTGG 61.554 72.222 6.35 2.82 41.69 4.45
29 30 2.444706 CGGGCAGAGATCCCTGGA 60.445 66.667 6.35 0.00 41.69 3.86
30 31 1.840650 CGGGCAGAGATCCCTGGAT 60.841 63.158 6.35 0.00 41.69 3.41
37 38 3.641454 GATCCCTGGATCCGCCCC 61.641 72.222 14.16 0.00 43.71 5.80
75 76 4.143333 CCACCGACCCGCCACTAG 62.143 72.222 0.00 0.00 0.00 2.57
76 77 4.814294 CACCGACCCGCCACTAGC 62.814 72.222 0.00 0.00 38.52 3.42
79 80 3.849951 CGACCCGCCACTAGCCAT 61.850 66.667 0.00 0.00 38.78 4.40
80 81 2.109181 GACCCGCCACTAGCCATC 59.891 66.667 0.00 0.00 38.78 3.51
81 82 3.462199 GACCCGCCACTAGCCATCC 62.462 68.421 0.00 0.00 38.78 3.51
82 83 3.479203 CCCGCCACTAGCCATCCA 61.479 66.667 0.00 0.00 38.78 3.41
83 84 2.203070 CCGCCACTAGCCATCCAC 60.203 66.667 0.00 0.00 38.78 4.02
84 85 2.203070 CGCCACTAGCCATCCACC 60.203 66.667 0.00 0.00 38.78 4.61
85 86 2.203070 GCCACTAGCCATCCACCG 60.203 66.667 0.00 0.00 34.35 4.94
86 87 2.203070 CCACTAGCCATCCACCGC 60.203 66.667 0.00 0.00 0.00 5.68
87 88 2.203070 CACTAGCCATCCACCGCC 60.203 66.667 0.00 0.00 0.00 6.13
88 89 3.849951 ACTAGCCATCCACCGCCG 61.850 66.667 0.00 0.00 0.00 6.46
89 90 4.609018 CTAGCCATCCACCGCCGG 62.609 72.222 0.00 0.00 0.00 6.13
132 133 3.751246 CCGCCTGCACCACCATTG 61.751 66.667 0.00 0.00 0.00 2.82
133 134 2.985282 CGCCTGCACCACCATTGT 60.985 61.111 0.00 0.00 0.00 2.71
134 135 2.652530 GCCTGCACCACCATTGTG 59.347 61.111 0.00 0.00 42.39 3.33
139 140 3.368822 CACCACCATTGTGCCCAG 58.631 61.111 0.00 0.00 41.35 4.45
140 141 2.601367 ACCACCATTGTGCCCAGC 60.601 61.111 0.00 0.00 41.35 4.85
141 142 3.751246 CCACCATTGTGCCCAGCG 61.751 66.667 0.00 0.00 41.35 5.18
142 143 3.751246 CACCATTGTGCCCAGCGG 61.751 66.667 0.00 0.00 35.31 5.52
174 175 3.414700 CGTCACCACGCCTGAAGC 61.415 66.667 0.00 0.00 39.69 3.86
175 176 2.031163 GTCACCACGCCTGAAGCT 59.969 61.111 0.00 0.00 40.39 3.74
176 177 2.031012 TCACCACGCCTGAAGCTG 59.969 61.111 0.00 0.00 40.39 4.24
177 178 2.031012 CACCACGCCTGAAGCTGA 59.969 61.111 0.00 0.00 40.39 4.26
178 179 1.597854 CACCACGCCTGAAGCTGAA 60.598 57.895 0.00 0.00 40.39 3.02
179 180 1.302033 ACCACGCCTGAAGCTGAAG 60.302 57.895 0.00 0.00 40.39 3.02
180 181 2.037136 CCACGCCTGAAGCTGAAGG 61.037 63.158 10.08 10.08 40.39 3.46
181 182 1.302033 CACGCCTGAAGCTGAAGGT 60.302 57.895 14.73 0.00 40.39 3.50
182 183 0.037326 CACGCCTGAAGCTGAAGGTA 60.037 55.000 14.73 0.00 40.39 3.08
183 184 0.247736 ACGCCTGAAGCTGAAGGTAG 59.752 55.000 14.73 11.83 40.39 3.18
184 185 1.086634 CGCCTGAAGCTGAAGGTAGC 61.087 60.000 14.73 0.00 44.01 3.58
185 186 0.036010 GCCTGAAGCTGAAGGTAGCA 60.036 55.000 14.73 0.00 46.07 3.49
186 187 2.011046 GCCTGAAGCTGAAGGTAGCAG 61.011 57.143 14.73 0.00 46.07 4.24
191 192 4.504132 CTGAAGGTAGCAGCGACC 57.496 61.111 16.64 16.64 37.22 4.79
192 193 1.517257 CTGAAGGTAGCAGCGACCG 60.517 63.158 18.10 1.21 42.21 4.79
193 194 1.934220 CTGAAGGTAGCAGCGACCGA 61.934 60.000 18.10 6.50 42.21 4.69
194 195 1.214589 GAAGGTAGCAGCGACCGAA 59.785 57.895 18.10 0.00 42.21 4.30
195 196 0.179108 GAAGGTAGCAGCGACCGAAT 60.179 55.000 18.10 9.35 42.21 3.34
196 197 0.179108 AAGGTAGCAGCGACCGAATC 60.179 55.000 18.10 0.00 42.21 2.52
197 198 1.591863 GGTAGCAGCGACCGAATCC 60.592 63.158 9.17 0.00 0.00 3.01
198 199 1.591863 GTAGCAGCGACCGAATCCC 60.592 63.158 0.00 0.00 0.00 3.85
199 200 3.133767 TAGCAGCGACCGAATCCCG 62.134 63.158 0.00 0.00 38.18 5.14
200 201 4.508128 GCAGCGACCGAATCCCGA 62.508 66.667 0.00 0.00 41.76 5.14
201 202 2.582498 CAGCGACCGAATCCCGAC 60.582 66.667 0.00 0.00 41.76 4.79
202 203 3.834799 AGCGACCGAATCCCGACC 61.835 66.667 0.00 0.00 41.76 4.79
205 206 4.886121 GACCGAATCCCGACCGGC 62.886 72.222 0.00 0.00 46.54 6.13
208 209 4.891727 CGAATCCCGACCGGCCAG 62.892 72.222 0.00 0.00 41.76 4.85
209 210 3.467226 GAATCCCGACCGGCCAGA 61.467 66.667 0.00 0.00 0.00 3.86
210 211 2.768344 AATCCCGACCGGCCAGAT 60.768 61.111 0.00 0.00 0.00 2.90
211 212 2.325393 GAATCCCGACCGGCCAGATT 62.325 60.000 0.00 5.24 0.00 2.40
212 213 2.325393 AATCCCGACCGGCCAGATTC 62.325 60.000 0.00 0.00 0.00 2.52
213 214 3.781307 CCCGACCGGCCAGATTCA 61.781 66.667 0.00 0.00 0.00 2.57
214 215 2.202932 CCGACCGGCCAGATTCAG 60.203 66.667 0.00 0.00 0.00 3.02
215 216 2.721167 CCGACCGGCCAGATTCAGA 61.721 63.158 0.00 0.00 0.00 3.27
216 217 1.443407 CGACCGGCCAGATTCAGAT 59.557 57.895 0.00 0.00 0.00 2.90
217 218 0.598680 CGACCGGCCAGATTCAGATC 60.599 60.000 0.00 0.00 0.00 2.75
218 219 0.250081 GACCGGCCAGATTCAGATCC 60.250 60.000 0.00 0.00 32.44 3.36
219 220 1.301244 CCGGCCAGATTCAGATCCG 60.301 63.158 2.24 0.00 36.90 4.18
220 221 1.301244 CGGCCAGATTCAGATCCGG 60.301 63.158 2.24 0.00 33.66 5.14
221 222 1.072159 GGCCAGATTCAGATCCGGG 59.928 63.158 0.00 0.00 31.56 5.73
222 223 1.410850 GGCCAGATTCAGATCCGGGA 61.411 60.000 0.00 0.00 31.56 5.14
223 224 0.689623 GCCAGATTCAGATCCGGGAT 59.310 55.000 9.85 9.85 31.56 3.85
224 225 1.610102 GCCAGATTCAGATCCGGGATG 60.610 57.143 15.70 2.30 31.56 3.51
225 226 1.973515 CCAGATTCAGATCCGGGATGA 59.026 52.381 15.70 5.11 31.93 2.92
226 227 2.028294 CCAGATTCAGATCCGGGATGAG 60.028 54.545 15.70 6.61 31.93 2.90
227 228 1.622811 AGATTCAGATCCGGGATGAGC 59.377 52.381 15.70 0.00 32.44 4.26
228 229 0.689623 ATTCAGATCCGGGATGAGCC 59.310 55.000 15.70 0.00 0.00 4.70
229 230 1.748329 TTCAGATCCGGGATGAGCCG 61.748 60.000 15.70 0.00 37.63 5.52
230 231 2.198703 AGATCCGGGATGAGCCGA 59.801 61.111 15.70 0.00 37.63 5.54
231 232 1.457643 AGATCCGGGATGAGCCGAA 60.458 57.895 15.70 0.00 37.63 4.30
232 233 0.833834 AGATCCGGGATGAGCCGAAT 60.834 55.000 15.70 0.00 37.63 3.34
233 234 0.895530 GATCCGGGATGAGCCGAATA 59.104 55.000 15.70 0.00 37.63 1.75
234 235 0.898320 ATCCGGGATGAGCCGAATAG 59.102 55.000 9.17 0.00 37.63 1.73
235 236 1.185618 TCCGGGATGAGCCGAATAGG 61.186 60.000 0.00 0.00 44.97 2.57
236 237 1.185618 CCGGGATGAGCCGAATAGGA 61.186 60.000 0.00 0.00 45.00 2.94
237 238 0.038159 CGGGATGAGCCGAATAGGAC 60.038 60.000 0.00 0.00 45.00 3.85
238 239 0.038159 GGGATGAGCCGAATAGGACG 60.038 60.000 0.00 0.00 45.00 4.79
245 246 3.428797 CGAATAGGACGGAGCCGA 58.571 61.111 16.83 0.00 42.83 5.54
246 247 1.283181 CGAATAGGACGGAGCCGAG 59.717 63.158 16.83 0.00 42.83 4.63
247 248 1.164662 CGAATAGGACGGAGCCGAGA 61.165 60.000 16.83 0.00 42.83 4.04
248 249 0.311477 GAATAGGACGGAGCCGAGAC 59.689 60.000 16.83 5.14 42.83 3.36
249 250 1.108132 AATAGGACGGAGCCGAGACC 61.108 60.000 16.83 14.57 42.83 3.85
250 251 2.980105 ATAGGACGGAGCCGAGACCC 62.980 65.000 16.83 10.44 42.83 4.46
278 279 4.393155 CTGCCACAGGTAGCGCCA 62.393 66.667 2.29 0.00 40.61 5.69
279 280 4.697756 TGCCACAGGTAGCGCCAC 62.698 66.667 2.29 0.00 40.61 5.01
284 285 4.814294 CAGGTAGCGCCACCGGAC 62.814 72.222 19.43 0.61 43.84 4.79
332 333 3.499737 CGAGCAGCCGCCGAAAAT 61.500 61.111 0.00 0.00 39.83 1.82
333 334 2.877691 GAGCAGCCGCCGAAAATT 59.122 55.556 0.00 0.00 39.83 1.82
334 335 1.226407 GAGCAGCCGCCGAAAATTC 60.226 57.895 0.00 0.00 39.83 2.17
345 346 2.077155 CGAAAATTCGCTGATCCACG 57.923 50.000 2.27 0.00 44.26 4.94
346 347 1.815132 GAAAATTCGCTGATCCACGC 58.185 50.000 0.00 0.00 0.00 5.34
347 348 0.451783 AAAATTCGCTGATCCACGCC 59.548 50.000 0.00 0.00 0.00 5.68
348 349 0.676466 AAATTCGCTGATCCACGCCA 60.676 50.000 0.00 0.00 0.00 5.69
349 350 1.369091 AATTCGCTGATCCACGCCAC 61.369 55.000 0.00 0.00 0.00 5.01
350 351 3.950794 TTCGCTGATCCACGCCACC 62.951 63.158 0.00 0.00 0.00 4.61
351 352 4.758251 CGCTGATCCACGCCACCA 62.758 66.667 0.00 0.00 0.00 4.17
352 353 2.359850 GCTGATCCACGCCACCAA 60.360 61.111 0.00 0.00 0.00 3.67
353 354 2.401766 GCTGATCCACGCCACCAAG 61.402 63.158 0.00 0.00 0.00 3.61
354 355 2.359850 TGATCCACGCCACCAAGC 60.360 61.111 0.00 0.00 0.00 4.01
355 356 2.045926 GATCCACGCCACCAAGCT 60.046 61.111 0.00 0.00 0.00 3.74
356 357 1.675641 GATCCACGCCACCAAGCTT 60.676 57.895 0.00 0.00 0.00 3.74
357 358 1.648467 GATCCACGCCACCAAGCTTC 61.648 60.000 0.00 0.00 0.00 3.86
358 359 2.410322 ATCCACGCCACCAAGCTTCA 62.410 55.000 0.00 0.00 0.00 3.02
359 360 2.192861 CCACGCCACCAAGCTTCAA 61.193 57.895 0.00 0.00 0.00 2.69
360 361 1.008538 CACGCCACCAAGCTTCAAC 60.009 57.895 0.00 0.00 0.00 3.18
361 362 2.193536 ACGCCACCAAGCTTCAACC 61.194 57.895 0.00 0.00 0.00 3.77
362 363 2.644992 GCCACCAAGCTTCAACCG 59.355 61.111 0.00 0.00 0.00 4.44
363 364 1.896660 GCCACCAAGCTTCAACCGA 60.897 57.895 0.00 0.00 0.00 4.69
364 365 1.949257 CCACCAAGCTTCAACCGAC 59.051 57.895 0.00 0.00 0.00 4.79
365 366 1.569493 CACCAAGCTTCAACCGACG 59.431 57.895 0.00 0.00 0.00 5.12
366 367 0.878523 CACCAAGCTTCAACCGACGA 60.879 55.000 0.00 0.00 0.00 4.20
367 368 0.179067 ACCAAGCTTCAACCGACGAA 60.179 50.000 0.00 0.00 0.00 3.85
368 369 0.512952 CCAAGCTTCAACCGACGAAG 59.487 55.000 0.00 0.00 42.31 3.79
369 370 1.497991 CAAGCTTCAACCGACGAAGA 58.502 50.000 0.00 0.00 42.05 2.87
370 371 1.457303 CAAGCTTCAACCGACGAAGAG 59.543 52.381 0.00 0.00 42.05 2.85
371 372 0.667792 AGCTTCAACCGACGAAGAGC 60.668 55.000 11.21 0.00 42.05 4.09
372 373 1.945776 GCTTCAACCGACGAAGAGCG 61.946 60.000 11.21 0.00 42.05 5.03
373 374 1.945776 CTTCAACCGACGAAGAGCGC 61.946 60.000 0.00 0.00 46.04 5.92
374 375 3.479269 CAACCGACGAAGAGCGCC 61.479 66.667 2.29 0.00 46.04 6.53
375 376 3.986006 AACCGACGAAGAGCGCCA 61.986 61.111 2.29 0.00 46.04 5.69
376 377 4.719369 ACCGACGAAGAGCGCCAC 62.719 66.667 2.29 0.00 46.04 5.01
390 391 2.109799 CCACGCCATGGCTAGGAG 59.890 66.667 33.07 19.95 43.24 3.69
391 392 2.434843 CCACGCCATGGCTAGGAGA 61.435 63.158 33.07 0.00 43.24 3.71
392 393 1.068753 CACGCCATGGCTAGGAGAG 59.931 63.158 33.07 18.49 39.32 3.20
393 394 2.136878 ACGCCATGGCTAGGAGAGG 61.137 63.158 33.07 17.76 39.32 3.69
394 395 2.876945 CGCCATGGCTAGGAGAGGG 61.877 68.421 33.07 11.50 39.32 4.30
395 396 2.524204 GCCATGGCTAGGAGAGGGG 61.524 68.421 29.98 0.00 38.26 4.79
396 397 1.845205 CCATGGCTAGGAGAGGGGG 60.845 68.421 0.00 0.00 0.00 5.40
418 419 3.827898 CGCCGAGGAGAGACCCAC 61.828 72.222 0.00 0.00 40.05 4.61
419 420 3.462678 GCCGAGGAGAGACCCACC 61.463 72.222 0.00 0.00 40.05 4.61
420 421 2.760385 CCGAGGAGAGACCCACCC 60.760 72.222 0.00 0.00 40.05 4.61
421 422 3.141488 CGAGGAGAGACCCACCCG 61.141 72.222 0.00 0.00 40.05 5.28
422 423 2.760385 GAGGAGAGACCCACCCGG 60.760 72.222 0.00 0.00 40.05 5.73
425 426 3.775654 GAGAGACCCACCCGGCAG 61.776 72.222 0.00 0.00 33.26 4.85
456 457 3.532155 CGGCGAGGAGGAGGGAAG 61.532 72.222 0.00 0.00 0.00 3.46
457 458 3.157949 GGCGAGGAGGAGGGAAGG 61.158 72.222 0.00 0.00 0.00 3.46
458 459 3.157949 GCGAGGAGGAGGGAAGGG 61.158 72.222 0.00 0.00 0.00 3.95
819 820 3.885297 CCCACACACAAAAGATGAACTCT 59.115 43.478 0.00 0.00 34.96 3.24
831 832 9.403110 CAAAAGATGAACTCTACAATTGGAAAG 57.597 33.333 10.83 0.00 32.41 2.62
841 842 7.088589 TCTACAATTGGAAAGCAAATCTAGC 57.911 36.000 10.83 0.00 0.00 3.42
853 854 4.408270 AGCAAATCTAGCCAAGAGAGATGA 59.592 41.667 0.00 0.00 37.74 2.92
896 908 1.805945 GCTCGTACCAAGCGGTCAG 60.806 63.158 0.00 0.00 44.71 3.51
952 975 3.078837 GTGATAGATCGACCTCCTCCTC 58.921 54.545 0.00 0.00 0.00 3.71
953 976 2.040545 TGATAGATCGACCTCCTCCTCC 59.959 54.545 0.00 0.00 0.00 4.30
954 977 1.822425 TAGATCGACCTCCTCCTCCT 58.178 55.000 0.00 0.00 0.00 3.69
955 978 0.476771 AGATCGACCTCCTCCTCCTC 59.523 60.000 0.00 0.00 0.00 3.71
956 979 0.538746 GATCGACCTCCTCCTCCTCC 60.539 65.000 0.00 0.00 0.00 4.30
957 980 1.289982 ATCGACCTCCTCCTCCTCCA 61.290 60.000 0.00 0.00 0.00 3.86
1421 1473 4.436998 CGACGAGGTCACCCCAGC 62.437 72.222 0.00 0.00 34.66 4.85
1422 1474 3.311110 GACGAGGTCACCCCAGCA 61.311 66.667 0.00 0.00 34.66 4.41
1423 1475 3.591254 GACGAGGTCACCCCAGCAC 62.591 68.421 0.00 0.00 34.66 4.40
1424 1476 4.742201 CGAGGTCACCCCAGCACG 62.742 72.222 0.00 0.00 34.66 5.34
1432 1484 3.399181 CCCCAGCACGCCCTCTTA 61.399 66.667 0.00 0.00 0.00 2.10
1433 1485 2.668632 CCCAGCACGCCCTCTTAA 59.331 61.111 0.00 0.00 0.00 1.85
1434 1486 1.224592 CCCAGCACGCCCTCTTAAT 59.775 57.895 0.00 0.00 0.00 1.40
1435 1487 0.815615 CCCAGCACGCCCTCTTAATC 60.816 60.000 0.00 0.00 0.00 1.75
1436 1488 0.179000 CCAGCACGCCCTCTTAATCT 59.821 55.000 0.00 0.00 0.00 2.40
1437 1489 1.407437 CCAGCACGCCCTCTTAATCTT 60.407 52.381 0.00 0.00 0.00 2.40
1438 1490 2.158957 CCAGCACGCCCTCTTAATCTTA 60.159 50.000 0.00 0.00 0.00 2.10
1439 1491 2.866762 CAGCACGCCCTCTTAATCTTAC 59.133 50.000 0.00 0.00 0.00 2.34
1440 1492 2.500098 AGCACGCCCTCTTAATCTTACA 59.500 45.455 0.00 0.00 0.00 2.41
1443 1495 3.865745 CACGCCCTCTTAATCTTACACTG 59.134 47.826 0.00 0.00 0.00 3.66
1451 1503 2.751166 AATCTTACACTGCACGCTCT 57.249 45.000 0.00 0.00 0.00 4.09
1472 1524 4.333649 TCTGTGTTCTTGTTTCTTGAGCTG 59.666 41.667 0.00 0.00 0.00 4.24
1525 1595 6.281848 TCATTTAGTAATTTCGATGCCGAC 57.718 37.500 0.00 0.00 45.50 4.79
1541 1611 2.806244 GCCGACCGCTGACATTATTATT 59.194 45.455 0.00 0.00 0.00 1.40
1551 1621 8.774586 CCGCTGACATTATTATTAAGTAGCTTT 58.225 33.333 0.00 0.00 0.00 3.51
1622 1692 7.444299 TGTACGGATCTAAAAACTACCAAACT 58.556 34.615 0.00 0.00 0.00 2.66
1634 1704 7.435068 AAACTACCAAACTTGCAGTACATAG 57.565 36.000 0.00 0.00 0.00 2.23
1656 1726 9.848172 CATAGTTTCCAAAATTTTCGTTTTCTG 57.152 29.630 0.00 0.00 0.00 3.02
1703 1773 3.797451 TTCAAGTCAAGTTTGCATGCA 57.203 38.095 18.46 18.46 0.00 3.96
1751 1826 1.935933 AGGTGTTTGTGTCGTCTCAC 58.064 50.000 0.00 0.00 38.63 3.51
1869 1945 6.927381 GCAAGCCGATATACTCTAGGTAAAAA 59.073 38.462 0.00 0.00 33.74 1.94
1918 2000 5.012239 AGAGTTTATCAGGAATTGCTGCAA 58.988 37.500 21.14 18.43 0.00 4.08
1978 2061 6.049955 TCTTGTTCAACTTCTAGGTATGGG 57.950 41.667 0.00 0.00 0.00 4.00
2062 2146 1.750778 AGGTATGCAATCCGCTTTTGG 59.249 47.619 0.00 0.00 43.06 3.28
2064 2148 2.479560 GGTATGCAATCCGCTTTTGGTC 60.480 50.000 0.00 0.00 43.06 4.02
2080 2164 6.035327 GCTTTTGGTCATTGCAATGATTAGTC 59.965 38.462 37.23 25.77 46.17 2.59
2248 2345 1.438651 TACTTCAGGACAATGCACGC 58.561 50.000 0.00 0.00 0.00 5.34
2297 2411 0.966179 GGCATTTCACCGGAAAACCT 59.034 50.000 9.46 0.00 45.52 3.50
2298 2412 1.343142 GGCATTTCACCGGAAAACCTT 59.657 47.619 9.46 0.00 45.52 3.50
2299 2413 2.224185 GGCATTTCACCGGAAAACCTTT 60.224 45.455 9.46 0.00 45.52 3.11
2300 2414 3.462982 GCATTTCACCGGAAAACCTTTT 58.537 40.909 9.46 0.00 45.52 2.27
2301 2415 3.874543 GCATTTCACCGGAAAACCTTTTT 59.125 39.130 9.46 0.00 45.52 1.94
2461 2594 0.242017 GGTGCTTCCACTGTTGCATC 59.758 55.000 0.00 0.00 41.75 3.91
2707 2877 4.382577 GCTTGTTTCCTTTTCCTTTCCACA 60.383 41.667 0.00 0.00 0.00 4.17
2918 3104 3.823281 TCACAAGGTTTGTCCGACTTA 57.177 42.857 0.00 0.00 43.23 2.24
2943 3129 8.608185 ACATTTTCATACTAACCCCATTTGAT 57.392 30.769 0.00 0.00 0.00 2.57
3105 3378 4.072839 TCGTCAGTCTGTCAGTCAGTTAT 58.927 43.478 0.00 0.00 43.97 1.89
3164 3445 6.451393 TCTGAGAACTTCTGTAGAAAGCTTC 58.549 40.000 0.00 0.00 33.07 3.86
3321 3618 9.469807 CTCCTTCTAGTGCTACTATTTGTTATG 57.530 37.037 0.00 0.00 29.08 1.90
3372 3670 6.756542 GGCACCAAACTTTATCCATATCAAAC 59.243 38.462 0.00 0.00 0.00 2.93
3376 3674 9.874205 ACCAAACTTTATCCATATCAAACATTG 57.126 29.630 0.00 0.00 0.00 2.82
3414 3712 8.893727 GCTAGTGTTTGGAGACATTTAACATAT 58.106 33.333 0.00 0.00 39.85 1.78
3462 3762 5.466728 TGTTTGTCTTTGTGAGAGCTACATC 59.533 40.000 0.00 0.00 34.31 3.06
3547 3855 3.837213 AATCAAACTGTGCTGGAATCG 57.163 42.857 0.00 0.00 0.00 3.34
3686 4004 9.725019 ATTGTCAGTCAATCAGTTATGTCTTTA 57.275 29.630 0.00 0.00 42.35 1.85
4165 4593 6.676990 AGGTAATCATCACATGCTATCTGA 57.323 37.500 0.00 0.00 0.00 3.27
4189 4617 4.751767 ATGAAAAACCTTGACCTGCAAA 57.248 36.364 0.00 0.00 35.74 3.68
4403 4831 2.271800 GTCTTACGGCACAGATGGAAG 58.728 52.381 0.00 0.00 0.00 3.46
4668 5104 6.650120 TGGAACTGAGACAACTACTCTTTTT 58.350 36.000 0.00 0.00 35.66 1.94
4950 5386 2.562298 CTGAGTTTGCCTTGCCCATAAA 59.438 45.455 0.00 0.00 0.00 1.40
5172 5624 1.067142 CAGGCGCTCCACAACTTACTA 60.067 52.381 7.64 0.00 33.74 1.82
5179 5631 4.321452 CGCTCCACAACTTACTACCTTGTA 60.321 45.833 0.00 0.00 0.00 2.41
5183 5635 7.174426 GCTCCACAACTTACTACCTTGTATTTT 59.826 37.037 0.00 0.00 0.00 1.82
5184 5636 9.715121 CTCCACAACTTACTACCTTGTATTTTA 57.285 33.333 0.00 0.00 0.00 1.52
5302 6018 5.871524 TCTTAGTGTATTTTGCTGCTCTGAG 59.128 40.000 0.00 0.00 0.00 3.35
5349 6069 7.282332 TGCCATTAGGATCTAGATATCATCG 57.718 40.000 4.89 0.00 36.89 3.84
5351 6071 6.015519 GCCATTAGGATCTAGATATCATCGCT 60.016 42.308 4.89 2.61 36.89 4.93
5432 6152 4.660168 ACAGATTTGATCAAGCTCCACTT 58.340 39.130 8.41 0.00 40.05 3.16
5524 6441 8.519492 TTTAGTTTGACTATGGTTGTACGTAC 57.481 34.615 18.90 18.90 29.64 3.67
5576 6493 4.040095 TGGCCATTTGATGACATGTTCAAA 59.960 37.500 21.86 21.86 43.70 2.69
5626 6545 9.941664 CCTTTTATTCTAGTTGCTACATGATTG 57.058 33.333 0.00 0.00 0.00 2.67
5633 6552 9.502091 TTCTAGTTGCTACATGATTGTAAAACT 57.498 29.630 0.00 13.76 42.36 2.66
5707 6790 5.154222 GCAAGCAAAGCTATTTAACGAAGT 58.846 37.500 0.00 0.00 40.55 3.01
5711 6794 7.668525 AGCAAAGCTATTTAACGAAGTACTT 57.331 32.000 8.13 8.13 36.93 2.24
5837 6929 7.756722 AGCATGCTGTTCTATTTTATGTTGAAC 59.243 33.333 21.98 0.00 37.92 3.18
5842 6934 8.462016 GCTGTTCTATTTTATGTTGAACTGGAT 58.538 33.333 0.00 0.00 38.17 3.41
5843 6935 9.778993 CTGTTCTATTTTATGTTGAACTGGATG 57.221 33.333 0.00 0.00 38.17 3.51
5844 6936 9.513906 TGTTCTATTTTATGTTGAACTGGATGA 57.486 29.630 0.00 0.00 38.17 2.92
5847 6939 9.739276 TCTATTTTATGTTGAACTGGATGAACT 57.261 29.630 0.00 0.00 0.00 3.01
5848 6940 9.778993 CTATTTTATGTTGAACTGGATGAACTG 57.221 33.333 0.00 0.00 0.00 3.16
5849 6941 6.573664 TTTATGTTGAACTGGATGAACTGG 57.426 37.500 0.00 0.00 0.00 4.00
5850 6942 3.855255 TGTTGAACTGGATGAACTGGA 57.145 42.857 0.00 0.00 0.00 3.86
5858 6950 4.137543 ACTGGATGAACTGGAAACACTTC 58.862 43.478 0.00 0.00 34.78 3.01
5901 7000 4.030216 TCAGTAGTACCATCCATTCTGCA 58.970 43.478 0.00 0.00 0.00 4.41
5902 7001 4.655649 TCAGTAGTACCATCCATTCTGCAT 59.344 41.667 0.00 0.00 0.00 3.96
5903 7002 5.130975 TCAGTAGTACCATCCATTCTGCATT 59.869 40.000 0.00 0.00 0.00 3.56
5905 7004 6.017605 CAGTAGTACCATCCATTCTGCATTTC 60.018 42.308 0.00 0.00 0.00 2.17
5907 7006 4.885907 AGTACCATCCATTCTGCATTTCTG 59.114 41.667 0.00 0.00 0.00 3.02
5922 7021 3.660501 TTTCTGCTCACATAGACACGT 57.339 42.857 0.00 0.00 0.00 4.49
5929 7028 3.430374 GCTCACATAGACACGTACCCATT 60.430 47.826 0.00 0.00 0.00 3.16
5997 7096 0.740737 GCTGCAGTTGTGGTTCTGTT 59.259 50.000 16.64 0.00 34.57 3.16
6011 7110 4.761739 TGGTTCTGTTTCATTGATGTCCTC 59.238 41.667 0.00 0.00 0.00 3.71
6012 7111 4.761739 GGTTCTGTTTCATTGATGTCCTCA 59.238 41.667 0.00 0.00 0.00 3.86
6050 7175 6.939730 TCAAGTGTGATGCTATTTCCTGTTTA 59.060 34.615 0.00 0.00 0.00 2.01
6581 8117 0.038166 TTGGTCTTCCCTGTGCATCC 59.962 55.000 0.00 0.00 0.00 3.51
6661 8214 5.651139 CCCATGGAATCCAGATTACATCATC 59.349 44.000 15.22 0.00 46.56 2.92
6680 8251 9.347240 ACATCATCTATATGGGTTTCTTTTCTG 57.653 33.333 0.00 0.00 33.61 3.02
6782 8361 4.440880 CTTTCTGCCTGAGATAAGTCTGG 58.559 47.826 0.00 0.00 38.32 3.86
6992 8576 3.320879 CTCCATCACCGCCTGCAGT 62.321 63.158 13.81 0.00 0.00 4.40
7106 8690 2.496070 GGTATCTATGGCGATGGCTGTA 59.504 50.000 0.00 0.00 39.81 2.74
7107 8691 3.056107 GGTATCTATGGCGATGGCTGTAA 60.056 47.826 0.00 0.00 39.81 2.41
7108 8692 2.526304 TCTATGGCGATGGCTGTAAC 57.474 50.000 0.00 0.00 39.81 2.50
7109 8693 1.139989 CTATGGCGATGGCTGTAACG 58.860 55.000 0.00 0.00 39.81 3.18
7110 8694 0.249699 TATGGCGATGGCTGTAACGG 60.250 55.000 0.00 0.00 39.81 4.44
7111 8695 2.125269 GGCGATGGCTGTAACGGT 60.125 61.111 0.00 0.00 39.81 4.83
7112 8696 2.461110 GGCGATGGCTGTAACGGTG 61.461 63.158 0.00 0.00 39.81 4.94
7113 8697 2.461110 GCGATGGCTGTAACGGTGG 61.461 63.158 0.00 0.00 35.83 4.61
7114 8698 1.079405 CGATGGCTGTAACGGTGGT 60.079 57.895 0.00 0.00 0.00 4.16
7115 8699 1.358725 CGATGGCTGTAACGGTGGTG 61.359 60.000 0.00 0.00 0.00 4.17
7116 8700 1.644786 GATGGCTGTAACGGTGGTGC 61.645 60.000 0.00 0.00 0.00 5.01
7117 8701 3.053896 GGCTGTAACGGTGGTGCC 61.054 66.667 0.00 0.00 0.00 5.01
7135 8719 4.785453 GGCCTCGAGCAAGGTGGG 62.785 72.222 6.99 0.00 46.50 4.61
7163 8747 2.539081 GGCTGGTGGGGAGAAGGTT 61.539 63.158 0.00 0.00 0.00 3.50
7168 8752 1.379146 GTGGGGAGAAGGTTGGGAC 59.621 63.158 0.00 0.00 0.00 4.46
7193 8777 4.749310 CCCGAGTCGCTGCTGCTT 62.749 66.667 14.03 0.00 36.97 3.91
7252 8836 2.818714 CTGCCGGAGCTGCTCAAG 60.819 66.667 28.95 21.31 40.80 3.02
7253 8837 4.399395 TGCCGGAGCTGCTCAAGG 62.399 66.667 28.95 28.45 40.80 3.61
7256 8840 3.123620 CGGAGCTGCTCAAGGTGC 61.124 66.667 28.95 11.09 41.01 5.01
7260 8844 3.745803 GCTGCTCAAGGTGCTGCC 61.746 66.667 9.91 0.00 45.39 4.85
7272 8856 4.704833 GCTGCCGGAGCTGGTCAA 62.705 66.667 5.05 0.00 45.21 3.18
7284 8868 4.821589 GGTCAAGCTCCTCGGCCG 62.822 72.222 22.12 22.12 0.00 6.13
7287 8871 4.069232 CAAGCTCCTCGGCCGTGA 62.069 66.667 27.84 21.84 0.00 4.35
7407 8991 1.305297 ACCTCCTCCACGATCTGCA 60.305 57.895 0.00 0.00 0.00 4.41
7408 8992 0.689080 ACCTCCTCCACGATCTGCAT 60.689 55.000 0.00 0.00 0.00 3.96
7409 8993 0.249784 CCTCCTCCACGATCTGCATG 60.250 60.000 0.00 0.00 0.00 4.06
7410 8994 0.249784 CTCCTCCACGATCTGCATGG 60.250 60.000 0.00 0.00 34.58 3.66
7468 9055 2.166007 CGGCGACAAAAAGATTAAGCG 58.834 47.619 0.00 0.00 0.00 4.68
7477 9064 4.342352 AAAAGATTAAGCGAAAGGAGCG 57.658 40.909 0.00 0.00 40.04 5.03
7478 9065 1.941325 AGATTAAGCGAAAGGAGCGG 58.059 50.000 0.00 0.00 40.04 5.52
7479 9066 1.207329 AGATTAAGCGAAAGGAGCGGT 59.793 47.619 0.00 0.00 41.69 5.68
7480 9067 2.429610 AGATTAAGCGAAAGGAGCGGTA 59.570 45.455 0.00 0.00 38.67 4.02
7481 9068 2.747396 TTAAGCGAAAGGAGCGGTAA 57.253 45.000 0.00 0.00 38.67 2.85
7482 9069 2.973694 TAAGCGAAAGGAGCGGTAAT 57.026 45.000 0.00 0.00 38.67 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 1.109920 TCTCTGCCCGGATCTAGTGC 61.110 60.000 0.73 0.00 0.00 4.40
3 4 1.543802 GATCTCTGCCCGGATCTAGTG 59.456 57.143 0.73 0.00 36.41 2.74
4 5 1.549037 GGATCTCTGCCCGGATCTAGT 60.549 57.143 0.73 0.00 38.56 2.57
5 6 1.181786 GGATCTCTGCCCGGATCTAG 58.818 60.000 0.73 0.00 38.56 2.43
6 7 0.251832 GGGATCTCTGCCCGGATCTA 60.252 60.000 0.73 0.00 38.56 1.98
7 8 1.535202 GGGATCTCTGCCCGGATCT 60.535 63.158 0.73 0.00 38.56 2.75
8 9 3.064416 GGGATCTCTGCCCGGATC 58.936 66.667 0.73 0.00 35.50 3.36
13 14 2.065483 GATCCAGGGATCTCTGCCC 58.935 63.158 17.80 4.32 45.42 5.36
58 59 4.143333 CTAGTGGCGGGTCGGTGG 62.143 72.222 0.00 0.00 0.00 4.61
59 60 4.814294 GCTAGTGGCGGGTCGGTG 62.814 72.222 0.00 0.00 0.00 4.94
62 63 3.792053 GATGGCTAGTGGCGGGTCG 62.792 68.421 0.00 0.00 42.94 4.79
63 64 2.109181 GATGGCTAGTGGCGGGTC 59.891 66.667 0.00 0.00 42.94 4.46
64 65 3.480133 GGATGGCTAGTGGCGGGT 61.480 66.667 0.00 0.00 42.94 5.28
65 66 3.479203 TGGATGGCTAGTGGCGGG 61.479 66.667 0.00 0.00 42.94 6.13
66 67 2.203070 GTGGATGGCTAGTGGCGG 60.203 66.667 0.00 0.00 42.94 6.13
67 68 2.203070 GGTGGATGGCTAGTGGCG 60.203 66.667 0.00 0.00 42.94 5.69
68 69 2.203070 CGGTGGATGGCTAGTGGC 60.203 66.667 0.00 0.00 40.90 5.01
69 70 2.203070 GCGGTGGATGGCTAGTGG 60.203 66.667 0.00 0.00 0.00 4.00
70 71 2.203070 GGCGGTGGATGGCTAGTG 60.203 66.667 0.00 0.00 0.00 2.74
71 72 3.849951 CGGCGGTGGATGGCTAGT 61.850 66.667 0.00 0.00 0.00 2.57
72 73 4.609018 CCGGCGGTGGATGGCTAG 62.609 72.222 19.97 0.00 0.00 3.42
115 116 3.751246 CAATGGTGGTGCAGGCGG 61.751 66.667 0.00 0.00 0.00 6.13
116 117 2.985282 ACAATGGTGGTGCAGGCG 60.985 61.111 0.00 0.00 0.00 5.52
117 118 2.652530 CACAATGGTGGTGCAGGC 59.347 61.111 0.00 0.00 41.45 4.85
122 123 2.934570 GCTGGGCACAATGGTGGTG 61.935 63.158 1.53 0.00 45.38 4.17
123 124 2.601367 GCTGGGCACAATGGTGGT 60.601 61.111 1.53 0.00 45.38 4.16
124 125 3.751246 CGCTGGGCACAATGGTGG 61.751 66.667 1.53 0.00 45.38 4.61
166 167 0.036010 TGCTACCTTCAGCTTCAGGC 60.036 55.000 7.75 0.00 42.30 4.85
167 168 2.021355 CTGCTACCTTCAGCTTCAGG 57.979 55.000 6.42 6.42 42.30 3.86
174 175 1.517257 CGGTCGCTGCTACCTTCAG 60.517 63.158 19.51 2.15 34.66 3.02
175 176 1.529152 TTCGGTCGCTGCTACCTTCA 61.529 55.000 19.51 2.66 34.66 3.02
176 177 0.179108 ATTCGGTCGCTGCTACCTTC 60.179 55.000 19.51 0.00 34.66 3.46
177 178 0.179108 GATTCGGTCGCTGCTACCTT 60.179 55.000 19.51 6.00 34.66 3.50
178 179 1.437986 GATTCGGTCGCTGCTACCT 59.562 57.895 19.51 2.74 34.66 3.08
179 180 1.591863 GGATTCGGTCGCTGCTACC 60.592 63.158 12.96 12.96 0.00 3.18
180 181 1.591863 GGGATTCGGTCGCTGCTAC 60.592 63.158 0.00 0.00 36.87 3.58
181 182 2.812499 GGGATTCGGTCGCTGCTA 59.188 61.111 0.00 0.00 36.87 3.49
182 183 4.514577 CGGGATTCGGTCGCTGCT 62.515 66.667 0.00 0.00 37.62 4.24
183 184 4.508128 TCGGGATTCGGTCGCTGC 62.508 66.667 0.00 0.00 39.77 5.25
184 185 2.582498 GTCGGGATTCGGTCGCTG 60.582 66.667 4.78 0.32 39.77 5.18
185 186 3.834799 GGTCGGGATTCGGTCGCT 61.835 66.667 4.78 0.00 39.77 4.93
187 188 4.564116 CCGGTCGGGATTCGGTCG 62.564 72.222 0.74 0.00 39.04 4.79
188 189 4.886121 GCCGGTCGGGATTCGGTC 62.886 72.222 11.60 4.67 44.97 4.79
191 192 4.891727 CTGGCCGGTCGGGATTCG 62.892 72.222 7.11 0.00 38.47 3.34
192 193 2.325393 AATCTGGCCGGTCGGGATTC 62.325 60.000 16.52 0.00 38.47 2.52
193 194 2.325393 GAATCTGGCCGGTCGGGATT 62.325 60.000 21.57 21.57 38.47 3.01
194 195 2.768344 AATCTGGCCGGTCGGGAT 60.768 61.111 16.52 11.80 38.47 3.85
195 196 3.467226 GAATCTGGCCGGTCGGGA 61.467 66.667 16.52 9.71 38.47 5.14
196 197 3.740128 CTGAATCTGGCCGGTCGGG 62.740 68.421 16.52 3.41 39.58 5.14
197 198 2.032860 ATCTGAATCTGGCCGGTCGG 62.033 60.000 9.17 9.17 38.57 4.79
198 199 0.598680 GATCTGAATCTGGCCGGTCG 60.599 60.000 12.43 0.00 0.00 4.79
199 200 0.250081 GGATCTGAATCTGGCCGGTC 60.250 60.000 12.43 0.00 32.12 4.79
200 201 1.832912 GGATCTGAATCTGGCCGGT 59.167 57.895 12.43 0.00 32.12 5.28
201 202 1.301244 CGGATCTGAATCTGGCCGG 60.301 63.158 4.71 4.71 35.03 6.13
202 203 4.350620 CGGATCTGAATCTGGCCG 57.649 61.111 0.00 7.59 35.03 6.13
206 207 2.612471 GCTCATCCCGGATCTGAATCTG 60.612 54.545 0.73 0.00 37.92 2.90
207 208 1.622811 GCTCATCCCGGATCTGAATCT 59.377 52.381 0.73 0.00 32.12 2.40
208 209 1.338579 GGCTCATCCCGGATCTGAATC 60.339 57.143 0.73 0.00 0.00 2.52
209 210 0.689623 GGCTCATCCCGGATCTGAAT 59.310 55.000 0.73 0.00 0.00 2.57
210 211 1.748329 CGGCTCATCCCGGATCTGAA 61.748 60.000 0.73 0.00 44.46 3.02
211 212 2.203082 CGGCTCATCCCGGATCTGA 61.203 63.158 0.73 1.21 44.46 3.27
212 213 2.341543 CGGCTCATCCCGGATCTG 59.658 66.667 0.73 0.00 44.46 2.90
213 214 0.833834 ATTCGGCTCATCCCGGATCT 60.834 55.000 0.73 0.00 42.94 2.75
214 215 0.895530 TATTCGGCTCATCCCGGATC 59.104 55.000 0.73 0.00 42.94 3.36
219 220 0.038159 CGTCCTATTCGGCTCATCCC 60.038 60.000 0.00 0.00 0.00 3.85
220 221 0.038159 CCGTCCTATTCGGCTCATCC 60.038 60.000 0.00 0.00 41.48 3.51
221 222 0.959553 TCCGTCCTATTCGGCTCATC 59.040 55.000 0.00 0.00 46.49 2.92
222 223 0.962489 CTCCGTCCTATTCGGCTCAT 59.038 55.000 0.00 0.00 46.49 2.90
223 224 1.735376 GCTCCGTCCTATTCGGCTCA 61.735 60.000 0.00 0.00 46.49 4.26
224 225 1.007154 GCTCCGTCCTATTCGGCTC 60.007 63.158 0.00 0.00 46.49 4.70
225 226 2.499827 GGCTCCGTCCTATTCGGCT 61.500 63.158 0.00 0.00 46.49 5.52
226 227 2.029221 GGCTCCGTCCTATTCGGC 59.971 66.667 0.00 0.00 46.49 5.54
228 229 1.164662 TCTCGGCTCCGTCCTATTCG 61.165 60.000 8.28 0.00 40.74 3.34
229 230 0.311477 GTCTCGGCTCCGTCCTATTC 59.689 60.000 8.28 0.00 40.74 1.75
230 231 1.108132 GGTCTCGGCTCCGTCCTATT 61.108 60.000 8.28 0.00 40.74 1.73
231 232 1.528776 GGTCTCGGCTCCGTCCTAT 60.529 63.158 8.28 0.00 40.74 2.57
232 233 2.124403 GGTCTCGGCTCCGTCCTA 60.124 66.667 8.28 0.00 40.74 2.94
267 268 4.814294 GTCCGGTGGCGCTACCTG 62.814 72.222 35.74 30.55 38.62 4.00
315 316 2.903079 GAATTTTCGGCGGCTGCTCG 62.903 60.000 18.85 18.75 42.25 5.03
316 317 1.226407 GAATTTTCGGCGGCTGCTC 60.226 57.895 18.85 6.71 42.25 4.26
317 318 2.877691 GAATTTTCGGCGGCTGCT 59.122 55.556 18.85 0.00 42.25 4.24
318 319 2.576847 CGAATTTTCGGCGGCTGC 60.577 61.111 9.72 9.72 46.30 5.25
327 328 1.531883 GGCGTGGATCAGCGAATTTTC 60.532 52.381 11.51 0.00 0.00 2.29
328 329 0.451783 GGCGTGGATCAGCGAATTTT 59.548 50.000 11.51 0.00 0.00 1.82
329 330 0.676466 TGGCGTGGATCAGCGAATTT 60.676 50.000 11.51 0.00 0.00 1.82
330 331 1.078497 TGGCGTGGATCAGCGAATT 60.078 52.632 11.51 0.00 0.00 2.17
331 332 1.815421 GTGGCGTGGATCAGCGAAT 60.815 57.895 11.51 0.00 0.00 3.34
332 333 2.434185 GTGGCGTGGATCAGCGAA 60.434 61.111 11.51 0.00 0.00 4.70
333 334 4.451150 GGTGGCGTGGATCAGCGA 62.451 66.667 11.51 0.66 0.00 4.93
334 335 4.758251 TGGTGGCGTGGATCAGCG 62.758 66.667 0.00 0.00 34.49 5.18
335 336 2.359850 TTGGTGGCGTGGATCAGC 60.360 61.111 0.00 0.00 0.00 4.26
336 337 2.401766 GCTTGGTGGCGTGGATCAG 61.402 63.158 0.00 0.00 0.00 2.90
337 338 2.359850 GCTTGGTGGCGTGGATCA 60.360 61.111 0.00 0.00 0.00 2.92
338 339 1.648467 GAAGCTTGGTGGCGTGGATC 61.648 60.000 2.10 0.00 37.29 3.36
339 340 1.675641 GAAGCTTGGTGGCGTGGAT 60.676 57.895 2.10 0.00 37.29 3.41
340 341 2.281484 GAAGCTTGGTGGCGTGGA 60.281 61.111 2.10 0.00 37.29 4.02
341 342 2.192861 TTGAAGCTTGGTGGCGTGG 61.193 57.895 2.10 0.00 37.29 4.94
342 343 1.008538 GTTGAAGCTTGGTGGCGTG 60.009 57.895 2.10 0.00 37.29 5.34
343 344 2.193536 GGTTGAAGCTTGGTGGCGT 61.194 57.895 2.10 0.00 37.29 5.68
344 345 2.644992 GGTTGAAGCTTGGTGGCG 59.355 61.111 2.10 0.00 37.29 5.69
345 346 1.896660 TCGGTTGAAGCTTGGTGGC 60.897 57.895 2.10 0.00 0.00 5.01
346 347 1.841663 CGTCGGTTGAAGCTTGGTGG 61.842 60.000 2.10 0.00 0.00 4.61
347 348 0.878523 TCGTCGGTTGAAGCTTGGTG 60.879 55.000 2.10 0.00 0.00 4.17
348 349 0.179067 TTCGTCGGTTGAAGCTTGGT 60.179 50.000 2.10 0.00 0.00 3.67
349 350 0.512952 CTTCGTCGGTTGAAGCTTGG 59.487 55.000 2.10 0.00 36.72 3.61
350 351 1.457303 CTCTTCGTCGGTTGAAGCTTG 59.543 52.381 2.10 0.00 42.02 4.01
351 352 1.784525 CTCTTCGTCGGTTGAAGCTT 58.215 50.000 0.00 0.00 42.02 3.74
352 353 0.667792 GCTCTTCGTCGGTTGAAGCT 60.668 55.000 7.16 0.00 42.02 3.74
353 354 1.782181 GCTCTTCGTCGGTTGAAGC 59.218 57.895 7.16 0.00 42.02 3.86
354 355 1.945776 GCGCTCTTCGTCGGTTGAAG 61.946 60.000 0.00 6.04 43.31 3.02
355 356 2.019951 GCGCTCTTCGTCGGTTGAA 61.020 57.895 0.00 0.00 41.07 2.69
356 357 2.430244 GCGCTCTTCGTCGGTTGA 60.430 61.111 0.00 0.00 41.07 3.18
357 358 3.479269 GGCGCTCTTCGTCGGTTG 61.479 66.667 7.64 0.00 41.07 3.77
377 378 2.524204 CCCCTCTCCTAGCCATGGC 61.524 68.421 30.12 30.12 42.33 4.40
378 379 1.845205 CCCCCTCTCCTAGCCATGG 60.845 68.421 7.63 7.63 0.00 3.66
379 380 3.897856 CCCCCTCTCCTAGCCATG 58.102 66.667 0.00 0.00 0.00 3.66
401 402 3.827898 GTGGGTCTCTCCTCGGCG 61.828 72.222 0.00 0.00 36.25 6.46
402 403 3.462678 GGTGGGTCTCTCCTCGGC 61.463 72.222 0.00 0.00 36.25 5.54
403 404 2.760385 GGGTGGGTCTCTCCTCGG 60.760 72.222 0.00 0.00 36.25 4.63
404 405 3.141488 CGGGTGGGTCTCTCCTCG 61.141 72.222 0.00 0.00 36.25 4.63
405 406 2.760385 CCGGGTGGGTCTCTCCTC 60.760 72.222 0.00 0.00 36.25 3.71
408 409 3.775654 CTGCCGGGTGGGTCTCTC 61.776 72.222 2.18 0.00 38.44 3.20
439 440 3.532155 CTTCCCTCCTCCTCGCCG 61.532 72.222 0.00 0.00 0.00 6.46
440 441 3.157949 CCTTCCCTCCTCCTCGCC 61.158 72.222 0.00 0.00 0.00 5.54
441 442 3.157949 CCCTTCCCTCCTCCTCGC 61.158 72.222 0.00 0.00 0.00 5.03
789 790 3.765894 TTGTGTGTGGGTCCTGCGG 62.766 63.158 0.00 0.00 0.00 5.69
790 791 1.380403 TTTTGTGTGTGGGTCCTGCG 61.380 55.000 0.00 0.00 0.00 5.18
791 792 0.385390 CTTTTGTGTGTGGGTCCTGC 59.615 55.000 0.00 0.00 0.00 4.85
792 793 2.051334 TCTTTTGTGTGTGGGTCCTG 57.949 50.000 0.00 0.00 0.00 3.86
793 794 2.174639 TCATCTTTTGTGTGTGGGTCCT 59.825 45.455 0.00 0.00 0.00 3.85
794 795 2.582052 TCATCTTTTGTGTGTGGGTCC 58.418 47.619 0.00 0.00 0.00 4.46
795 796 3.632145 AGTTCATCTTTTGTGTGTGGGTC 59.368 43.478 0.00 0.00 0.00 4.46
796 797 3.631250 AGTTCATCTTTTGTGTGTGGGT 58.369 40.909 0.00 0.00 0.00 4.51
797 798 3.885297 AGAGTTCATCTTTTGTGTGTGGG 59.115 43.478 0.00 0.00 32.99 4.61
798 799 5.527214 TGTAGAGTTCATCTTTTGTGTGTGG 59.473 40.000 0.00 0.00 39.64 4.17
799 800 6.603237 TGTAGAGTTCATCTTTTGTGTGTG 57.397 37.500 0.00 0.00 39.64 3.82
800 801 7.807977 ATTGTAGAGTTCATCTTTTGTGTGT 57.192 32.000 0.00 0.00 39.64 3.72
801 802 7.592533 CCAATTGTAGAGTTCATCTTTTGTGTG 59.407 37.037 4.43 0.00 39.64 3.82
802 803 7.502226 TCCAATTGTAGAGTTCATCTTTTGTGT 59.498 33.333 4.43 0.00 39.64 3.72
803 804 7.874940 TCCAATTGTAGAGTTCATCTTTTGTG 58.125 34.615 4.43 0.00 39.64 3.33
819 820 5.714333 TGGCTAGATTTGCTTTCCAATTGTA 59.286 36.000 4.43 0.00 32.49 2.41
831 832 4.701765 TCATCTCTCTTGGCTAGATTTGC 58.298 43.478 0.00 0.00 30.92 3.68
841 842 6.814506 AATTGTTGAGTTCATCTCTCTTGG 57.185 37.500 0.00 0.00 43.13 3.61
867 876 4.801891 CTTGGTACGAGCTTACTGTGTTA 58.198 43.478 0.00 0.00 0.00 2.41
871 880 1.402456 CGCTTGGTACGAGCTTACTGT 60.402 52.381 15.24 0.00 37.99 3.55
974 997 0.335361 GGAGGGAGTGGGACTAGTGA 59.665 60.000 0.00 0.00 0.00 3.41
1066 1103 3.766691 GAAGTCCGCGGGCAGGTA 61.767 66.667 34.17 4.86 0.00 3.08
1116 1159 2.125229 TCGTCCTCGTCCTCCTCG 60.125 66.667 0.00 0.00 38.33 4.63
1421 1473 3.865745 CAGTGTAAGATTAAGAGGGCGTG 59.134 47.826 0.00 0.00 0.00 5.34
1422 1474 3.679083 GCAGTGTAAGATTAAGAGGGCGT 60.679 47.826 0.00 0.00 0.00 5.68
1423 1475 2.866762 GCAGTGTAAGATTAAGAGGGCG 59.133 50.000 0.00 0.00 0.00 6.13
1424 1476 3.623510 GTGCAGTGTAAGATTAAGAGGGC 59.376 47.826 0.00 0.00 0.00 5.19
1425 1477 3.865745 CGTGCAGTGTAAGATTAAGAGGG 59.134 47.826 0.00 0.00 0.00 4.30
1426 1478 3.307242 GCGTGCAGTGTAAGATTAAGAGG 59.693 47.826 0.00 0.00 0.00 3.69
1427 1479 4.177026 AGCGTGCAGTGTAAGATTAAGAG 58.823 43.478 0.00 0.00 0.00 2.85
1428 1480 4.082190 AGAGCGTGCAGTGTAAGATTAAGA 60.082 41.667 0.00 0.00 0.00 2.10
1429 1481 4.032217 CAGAGCGTGCAGTGTAAGATTAAG 59.968 45.833 0.00 0.00 0.00 1.85
1430 1482 3.926527 CAGAGCGTGCAGTGTAAGATTAA 59.073 43.478 0.00 0.00 0.00 1.40
1431 1483 3.056821 ACAGAGCGTGCAGTGTAAGATTA 60.057 43.478 0.00 0.00 0.00 1.75
1432 1484 2.289072 ACAGAGCGTGCAGTGTAAGATT 60.289 45.455 0.00 0.00 0.00 2.40
1433 1485 1.273606 ACAGAGCGTGCAGTGTAAGAT 59.726 47.619 0.00 0.00 0.00 2.40
1434 1486 0.673985 ACAGAGCGTGCAGTGTAAGA 59.326 50.000 0.00 0.00 0.00 2.10
1435 1487 0.786581 CACAGAGCGTGCAGTGTAAG 59.213 55.000 0.00 0.00 39.19 2.34
1436 1488 2.899153 CACAGAGCGTGCAGTGTAA 58.101 52.632 0.00 0.00 39.19 2.41
1437 1489 4.653555 CACAGAGCGTGCAGTGTA 57.346 55.556 0.00 0.00 39.19 2.90
1451 1503 3.181497 GCAGCTCAAGAAACAAGAACACA 60.181 43.478 0.00 0.00 0.00 3.72
1472 1524 3.795688 TGAGGGGAGAATAATCCATGC 57.204 47.619 0.00 0.00 41.52 4.06
1525 1595 7.891183 AGCTACTTAATAATAATGTCAGCGG 57.109 36.000 0.00 0.00 0.00 5.52
1551 1621 7.781324 TGGATATGTATCATCACTGAAGCTA 57.219 36.000 0.00 0.00 34.37 3.32
1564 1634 9.610705 ATTTATGAGTGAGCATGGATATGTATC 57.389 33.333 0.00 0.00 36.65 2.24
1622 1692 9.255304 GAAAATTTTGGAAACTATGTACTGCAA 57.745 29.630 8.47 0.00 0.00 4.08
1634 1704 6.771076 AGCAGAAAACGAAAATTTTGGAAAC 58.229 32.000 18.40 7.64 31.90 2.78
1720 1790 0.034896 AAACACCTACACCTCCAGCG 59.965 55.000 0.00 0.00 0.00 5.18
1918 2000 8.739972 GTGATGTTATGGTTTTACCTGAGAAAT 58.260 33.333 0.00 0.00 39.58 2.17
1978 2061 1.661341 CAGCTAACCTGTGCTCATCC 58.339 55.000 0.00 0.00 37.44 3.51
2062 2146 6.690194 AAGGAGACTAATCATTGCAATGAC 57.310 37.500 37.50 25.91 44.19 3.06
2064 2148 7.420800 GGTTAAGGAGACTAATCATTGCAATG 58.579 38.462 29.75 29.75 42.68 2.82
2080 2164 3.431415 CCCAAAGGAAAGGGTTAAGGAG 58.569 50.000 0.00 0.00 40.34 3.69
2306 2420 9.502091 ACAGTGTAAAATCAGCTTAGAATACAA 57.498 29.630 0.00 0.00 0.00 2.41
2461 2594 9.480053 ACAAGAAATTCAAATGTGTTAAGATGG 57.520 29.630 0.00 0.00 0.00 3.51
2501 2635 9.264719 CAGTGCAAGACTGTATAATGATTATGA 57.735 33.333 7.91 0.00 46.30 2.15
2524 2658 6.115446 TGTGTTTTCAGACAGAGAAATCAGT 58.885 36.000 0.00 0.00 36.14 3.41
2707 2877 8.506083 AGTCCAAAATGTATTAAGATGGGATCT 58.494 33.333 0.00 0.00 42.61 2.75
2918 3104 8.608185 ATCAAATGGGGTTAGTATGAAAATGT 57.392 30.769 0.00 0.00 0.00 2.71
3077 3350 4.519350 TGACTGACAGACTGACGATAAAGT 59.481 41.667 10.08 2.04 0.00 2.66
3078 3351 5.048153 TGACTGACAGACTGACGATAAAG 57.952 43.478 10.08 0.00 0.00 1.85
3105 3378 5.949354 CCCACTTTGGATATGGTAAAAGACA 59.051 40.000 0.00 0.00 40.96 3.41
3164 3445 5.469479 GTGATACCAAAGAACACAAATGGG 58.531 41.667 0.00 0.00 35.44 4.00
3321 3618 2.440980 GGATGCCAGAAGCCCACC 60.441 66.667 0.00 0.00 42.71 4.61
3372 3670 2.294233 ACTAGCAACCACAAGTGCAATG 59.706 45.455 0.00 0.00 0.00 2.82
3376 3674 1.308998 ACACTAGCAACCACAAGTGC 58.691 50.000 1.43 0.00 42.44 4.40
3462 3762 6.037098 TGGACAAACCTGAAATTAACAAACG 58.963 36.000 0.00 0.00 39.86 3.60
3547 3855 7.081349 TGTGTTACATTTTAGCACATAAGCAC 58.919 34.615 0.00 0.00 34.53 4.40
3588 3906 6.543831 GTGGCATCTAAAATGTATTGAGGAGT 59.456 38.462 0.00 0.00 0.00 3.85
3589 3907 6.769822 AGTGGCATCTAAAATGTATTGAGGAG 59.230 38.462 0.00 0.00 0.00 3.69
3590 3908 6.662755 AGTGGCATCTAAAATGTATTGAGGA 58.337 36.000 0.00 0.00 0.00 3.71
3591 3909 6.949352 AGTGGCATCTAAAATGTATTGAGG 57.051 37.500 0.00 0.00 0.00 3.86
3592 3910 7.912250 GTCAAGTGGCATCTAAAATGTATTGAG 59.088 37.037 0.00 0.00 0.00 3.02
3593 3911 7.148086 GGTCAAGTGGCATCTAAAATGTATTGA 60.148 37.037 0.00 0.00 0.00 2.57
3594 3912 6.974622 GGTCAAGTGGCATCTAAAATGTATTG 59.025 38.462 0.00 0.00 0.00 1.90
3595 3913 6.891908 AGGTCAAGTGGCATCTAAAATGTATT 59.108 34.615 0.00 0.00 0.00 1.89
3596 3914 6.426587 AGGTCAAGTGGCATCTAAAATGTAT 58.573 36.000 0.00 0.00 0.00 2.29
3597 3915 5.815581 AGGTCAAGTGGCATCTAAAATGTA 58.184 37.500 0.00 0.00 0.00 2.29
3962 4386 3.742433 ATCCATCTCCTTAGACTTGCG 57.258 47.619 0.00 0.00 33.57 4.85
4002 4427 6.053632 TCAGAAATAAGAATGCAGAGGACA 57.946 37.500 0.00 0.00 0.00 4.02
4016 4444 8.027524 ACCAAGATCATAGCTCTCAGAAATAA 57.972 34.615 0.00 0.00 0.00 1.40
4165 4593 5.096443 TGCAGGTCAAGGTTTTTCATTTT 57.904 34.783 0.00 0.00 0.00 1.82
4403 4831 7.308782 ACACTGCATATAAACTTCTACAAGC 57.691 36.000 0.00 0.00 32.09 4.01
4668 5104 0.535335 GGCCCTAGACATCGTTGACA 59.465 55.000 0.00 0.00 0.00 3.58
4950 5386 3.575687 CCTCTTCTGTTGCTTGGGATTTT 59.424 43.478 0.00 0.00 0.00 1.82
5006 5455 8.762645 TCTCTCAAAGATGGTTCACTAATACAT 58.237 33.333 0.00 0.00 0.00 2.29
5021 5470 6.206243 CACACATCAGGTTTTCTCTCAAAGAT 59.794 38.462 0.00 0.00 32.82 2.40
5184 5636 9.287373 ACAGCAACAATCCAATCAAAAATTAAT 57.713 25.926 0.00 0.00 0.00 1.40
5185 5637 8.674263 ACAGCAACAATCCAATCAAAAATTAA 57.326 26.923 0.00 0.00 0.00 1.40
5186 5638 8.557864 CAACAGCAACAATCCAATCAAAAATTA 58.442 29.630 0.00 0.00 0.00 1.40
5206 5663 2.396590 TAACTCGGGGAATCAACAGC 57.603 50.000 0.00 0.00 0.00 4.40
5302 6018 7.415653 GGCATATTATTAGTGGCTAATTGGCTC 60.416 40.741 13.90 7.47 37.72 4.70
5332 6052 7.473735 TTTGAAGCGATGATATCTAGATCCT 57.526 36.000 8.95 0.00 0.00 3.24
5349 6069 7.481275 TGTTTCCAGAAAAATGATTTGAAGC 57.519 32.000 0.00 0.00 31.33 3.86
5351 6071 8.891720 CCTTTGTTTCCAGAAAAATGATTTGAA 58.108 29.630 0.00 0.00 31.33 2.69
5363 6083 7.947890 AGTTTATACATCCCTTTGTTTCCAGAA 59.052 33.333 0.00 0.00 0.00 3.02
5513 6430 0.247460 GGGTCCAGGTACGTACAACC 59.753 60.000 26.02 23.19 37.27 3.77
5545 6462 6.357579 TGTCATCAAATGGCCATAACTTTT 57.642 33.333 21.15 7.10 32.84 2.27
5576 6493 7.558444 AGGTAATAGTTTCATCTCTCTCGAAGT 59.442 37.037 0.00 0.00 0.00 3.01
5630 6549 7.067372 TGTGAATGAGAAAAATCTGTGTGAGTT 59.933 33.333 0.00 0.00 34.11 3.01
5633 6552 6.940831 TGTGAATGAGAAAAATCTGTGTGA 57.059 33.333 0.00 0.00 0.00 3.58
5707 6790 4.079253 GCCCTCATGGTTTCAGAAAAGTA 58.921 43.478 0.00 0.00 36.04 2.24
5711 6794 2.673775 TGCCCTCATGGTTTCAGAAA 57.326 45.000 0.00 0.00 36.04 2.52
5813 6905 9.069078 CAGTTCAACATAAAATAGAACAGCATG 57.931 33.333 0.00 0.00 40.63 4.06
5837 6929 4.756084 GAAGTGTTTCCAGTTCATCCAG 57.244 45.455 5.60 0.00 46.13 3.86
5843 6935 6.253512 GTGTTTGAATGAAGTGTTTCCAGTTC 59.746 38.462 3.83 3.83 46.75 3.01
5844 6936 6.099341 GTGTTTGAATGAAGTGTTTCCAGTT 58.901 36.000 0.00 0.00 36.93 3.16
5845 6937 5.394115 GGTGTTTGAATGAAGTGTTTCCAGT 60.394 40.000 0.00 0.00 32.09 4.00
5846 6938 5.043248 GGTGTTTGAATGAAGTGTTTCCAG 58.957 41.667 0.00 0.00 32.09 3.86
5847 6939 4.709397 AGGTGTTTGAATGAAGTGTTTCCA 59.291 37.500 0.00 0.00 32.09 3.53
5848 6940 5.262588 AGGTGTTTGAATGAAGTGTTTCC 57.737 39.130 0.00 0.00 32.09 3.13
5849 6941 8.592155 GTTTTAGGTGTTTGAATGAAGTGTTTC 58.408 33.333 0.00 0.00 0.00 2.78
5850 6942 7.547722 GGTTTTAGGTGTTTGAATGAAGTGTTT 59.452 33.333 0.00 0.00 0.00 2.83
5858 6950 7.209475 ACTGAATGGTTTTAGGTGTTTGAATG 58.791 34.615 0.00 0.00 0.00 2.67
5901 7000 4.193826 ACGTGTCTATGTGAGCAGAAAT 57.806 40.909 0.00 0.00 0.00 2.17
5902 7001 3.660501 ACGTGTCTATGTGAGCAGAAA 57.339 42.857 0.00 0.00 0.00 2.52
5903 7002 3.119602 GGTACGTGTCTATGTGAGCAGAA 60.120 47.826 0.00 0.00 0.00 3.02
5905 7004 2.479730 GGGTACGTGTCTATGTGAGCAG 60.480 54.545 0.00 0.00 0.00 4.24
5907 7006 1.475280 TGGGTACGTGTCTATGTGAGC 59.525 52.381 0.00 0.00 0.00 4.26
5909 7008 3.118920 CCAATGGGTACGTGTCTATGTGA 60.119 47.826 0.00 0.00 0.00 3.58
5915 7014 1.580059 ATCCCAATGGGTACGTGTCT 58.420 50.000 19.28 0.00 44.74 3.41
5916 7015 3.070446 TCATATCCCAATGGGTACGTGTC 59.930 47.826 19.28 0.00 44.74 3.67
5918 7017 3.664107 CTCATATCCCAATGGGTACGTG 58.336 50.000 19.28 12.83 44.74 4.49
5922 7021 2.040278 GCAGCTCATATCCCAATGGGTA 59.960 50.000 19.28 10.41 44.74 3.69
6011 7110 7.272084 GCATCACACTTGAGCTAGTAAAATTTG 59.728 37.037 0.00 0.00 34.35 2.32
6012 7111 7.175641 AGCATCACACTTGAGCTAGTAAAATTT 59.824 33.333 0.00 0.00 35.63 1.82
6218 7714 8.319057 AGTAAGATCCATCAGGTTATTACACA 57.681 34.615 10.80 0.00 40.93 3.72
6390 7897 3.607078 CGACGGAAGAGGCAAAAGAAAAG 60.607 47.826 0.00 0.00 0.00 2.27
6567 8102 1.450312 GACGGGATGCACAGGGAAG 60.450 63.158 0.00 0.00 0.00 3.46
6661 8214 9.454859 AGAAGAACAGAAAAGAAACCCATATAG 57.545 33.333 0.00 0.00 0.00 1.31
6679 8250 9.065798 TGAATTGATTGAACATACAGAAGAACA 57.934 29.630 0.00 0.00 0.00 3.18
6680 8251 9.552114 CTGAATTGATTGAACATACAGAAGAAC 57.448 33.333 0.00 0.00 0.00 3.01
6733 8312 4.095036 GGTGCCAGCTACTATGAAAAGTTC 59.905 45.833 0.00 0.00 0.00 3.01
6782 8361 8.851416 CGACGATACTAGGAATTCATGTATTTC 58.149 37.037 7.93 10.61 0.00 2.17
6980 8564 2.816958 CAGCTACTGCAGGCGGTG 60.817 66.667 19.93 18.79 42.74 4.94
7047 8631 3.417224 CGACGACGACAGGACCGA 61.417 66.667 0.00 0.00 42.66 4.69
7086 8670 2.751166 ACAGCCATCGCCATAGATAC 57.249 50.000 0.00 0.00 34.57 2.24
7118 8702 4.785453 CCCACCTTGCTCGAGGCC 62.785 72.222 15.58 0.00 40.65 5.19
7119 8703 4.785453 CCCCACCTTGCTCGAGGC 62.785 72.222 15.58 7.24 40.65 4.70
7120 8704 4.101448 CCCCCACCTTGCTCGAGG 62.101 72.222 15.58 0.00 42.75 4.63
7148 8732 2.160171 CCCAACCTTCTCCCCACCA 61.160 63.158 0.00 0.00 0.00 4.17
7150 8734 1.379146 GTCCCAACCTTCTCCCCAC 59.621 63.158 0.00 0.00 0.00 4.61
7151 8735 2.221299 CGTCCCAACCTTCTCCCCA 61.221 63.158 0.00 0.00 0.00 4.96
7243 8827 3.745803 GGCAGCACCTTGAGCAGC 61.746 66.667 0.00 0.00 42.85 5.25
7246 8830 4.704833 TCCGGCAGCACCTTGAGC 62.705 66.667 0.00 0.00 35.61 4.26
7247 8831 2.435586 CTCCGGCAGCACCTTGAG 60.436 66.667 0.00 0.00 35.61 3.02
7256 8840 2.435586 CTTGACCAGCTCCGGCAG 60.436 66.667 0.00 0.00 41.70 4.85
7271 8855 3.764466 CTCACGGCCGAGGAGCTT 61.764 66.667 35.90 3.57 0.00 3.74
7310 8894 2.202851 AAGGAGCAGAGCATCGCG 60.203 61.111 0.00 0.00 42.67 5.87
7389 8973 0.689080 ATGCAGATCGTGGAGGAGGT 60.689 55.000 0.00 0.00 0.00 3.85
7427 9014 3.200593 CGTGGCATGCAGAGCTCC 61.201 66.667 21.36 0.00 0.00 4.70
7449 9036 3.465122 TCGCTTAATCTTTTTGTCGCC 57.535 42.857 0.00 0.00 0.00 5.54
7455 9042 4.379499 CCGCTCCTTTCGCTTAATCTTTTT 60.379 41.667 0.00 0.00 0.00 1.94
7456 9043 3.127030 CCGCTCCTTTCGCTTAATCTTTT 59.873 43.478 0.00 0.00 0.00 2.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.