Multiple sequence alignment - TraesCS3D01G540600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G540600 chr3D 100.000 3375 0 0 1 3375 611920440 611917066 0.000000e+00 6233.0
1 TraesCS3D01G540600 chr3D 99.213 254 1 1 1 253 4375089 4374836 1.100000e-124 457.0
2 TraesCS3D01G540600 chr3D 99.213 254 1 1 1 253 580140884 580141137 1.100000e-124 457.0
3 TraesCS3D01G540600 chr3D 99.213 254 1 1 1 253 608282145 608282398 1.100000e-124 457.0
4 TraesCS3D01G540600 chr3D 97.619 168 3 1 288 454 574907834 574907667 1.530000e-73 287.0
5 TraesCS3D01G540600 chr3D 78.534 191 35 4 1434 1621 13168553 13168366 1.640000e-23 121.0
6 TraesCS3D01G540600 chr3D 100.000 38 0 0 252 289 17202103 17202066 1.680000e-08 71.3
7 TraesCS3D01G540600 chr3D 100.000 38 0 0 252 289 18483725 18483688 1.680000e-08 71.3
8 TraesCS3D01G540600 chr3D 100.000 38 0 0 252 289 598491183 598491220 1.680000e-08 71.3
9 TraesCS3D01G540600 chr3B 94.846 2309 58 18 1125 3375 829542450 829540145 0.000000e+00 3548.0
10 TraesCS3D01G540600 chr3B 83.333 648 30 28 448 1039 829543182 829542557 8.290000e-146 527.0
11 TraesCS3D01G540600 chr3A 91.956 1815 86 31 767 2528 746634862 746633055 0.000000e+00 2488.0
12 TraesCS3D01G540600 chr3A 93.179 865 31 14 2525 3375 746632868 746632018 0.000000e+00 1245.0
13 TraesCS3D01G540600 chr3A 88.060 335 11 5 448 757 746635235 746634905 1.480000e-98 370.0
14 TraesCS3D01G540600 chrUn 99.213 254 1 1 1 253 98763330 98763583 1.100000e-124 457.0
15 TraesCS3D01G540600 chr7D 99.213 254 1 1 1 253 568410747 568410494 1.100000e-124 457.0
16 TraesCS3D01G540600 chr7D 97.605 167 3 1 288 453 494902960 494902794 5.510000e-73 285.0
17 TraesCS3D01G540600 chr7D 100.000 38 0 0 252 289 104563790 104563753 1.680000e-08 71.3
18 TraesCS3D01G540600 chr7D 100.000 38 0 0 252 289 406349245 406349208 1.680000e-08 71.3
19 TraesCS3D01G540600 chr6D 99.213 254 1 1 1 253 423196964 423197217 1.100000e-124 457.0
20 TraesCS3D01G540600 chr6D 97.605 167 4 0 288 454 43519112 43518946 1.530000e-73 287.0
21 TraesCS3D01G540600 chr6D 98.171 164 3 0 288 451 407111327 407111164 1.530000e-73 287.0
22 TraesCS3D01G540600 chr6D 100.000 38 0 0 252 289 461543741 461543778 1.680000e-08 71.3
23 TraesCS3D01G540600 chr1D 99.213 254 1 1 1 253 79147734 79147987 1.100000e-124 457.0
24 TraesCS3D01G540600 chr1D 99.213 254 1 1 1 253 107809674 107809421 1.100000e-124 457.0
25 TraesCS3D01G540600 chr1D 99.209 253 2 0 1 253 326529561 326529813 1.100000e-124 457.0
26 TraesCS3D01G540600 chr1D 98.780 164 1 1 288 451 421571074 421571236 1.180000e-74 291.0
27 TraesCS3D01G540600 chr1D 80.000 205 39 2 1422 1625 22437243 22437040 2.100000e-32 150.0
28 TraesCS3D01G540600 chr5D 98.773 163 2 0 288 450 286925037 286925199 1.180000e-74 291.0
29 TraesCS3D01G540600 chr5D 96.552 174 5 1 288 461 6352578 6352406 1.530000e-73 287.0
30 TraesCS3D01G540600 chr5D 98.171 164 3 0 288 451 558252029 558251866 1.530000e-73 287.0
31 TraesCS3D01G540600 chr5D 97.024 168 5 0 288 455 238932210 238932377 1.980000e-72 283.0
32 TraesCS3D01G540600 chr5D 97.222 36 1 0 1580 1615 130189318 130189353 1.010000e-05 62.1
33 TraesCS3D01G540600 chr1B 81.951 205 35 2 1422 1625 37799453 37799656 4.480000e-39 172.0
34 TraesCS3D01G540600 chr1B 100.000 38 0 0 252 289 640187488 640187451 1.680000e-08 71.3
35 TraesCS3D01G540600 chr4A 79.907 214 36 6 1411 1620 159294867 159294657 2.100000e-32 150.0
36 TraesCS3D01G540600 chr2D 79.897 194 39 0 1424 1617 48133243 48133436 3.510000e-30 143.0
37 TraesCS3D01G540600 chr2B 79.897 194 39 0 1424 1617 75847560 75847753 3.510000e-30 143.0
38 TraesCS3D01G540600 chr4D 79.070 215 37 7 1411 1620 315597308 315597519 1.260000e-29 141.0
39 TraesCS3D01G540600 chr4D 100.000 38 0 0 252 289 140416759 140416796 1.680000e-08 71.3
40 TraesCS3D01G540600 chr1A 79.024 205 41 2 1422 1625 23339861 23340064 4.540000e-29 139.0
41 TraesCS3D01G540600 chr1A 100.000 38 0 0 252 289 581739855 581739892 1.680000e-08 71.3
42 TraesCS3D01G540600 chr2A 80.447 179 35 0 1442 1620 51008477 51008299 1.630000e-28 137.0
43 TraesCS3D01G540600 chr4B 78.140 215 39 7 1411 1620 393406255 393406466 2.730000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G540600 chr3D 611917066 611920440 3374 True 6233.000000 6233 100.0000 1 3375 1 chr3D.!!$R6 3374
1 TraesCS3D01G540600 chr3B 829540145 829543182 3037 True 2037.500000 3548 89.0895 448 3375 2 chr3B.!!$R1 2927
2 TraesCS3D01G540600 chr3A 746632018 746635235 3217 True 1367.666667 2488 91.0650 448 3375 3 chr3A.!!$R1 2927

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
111 112 0.033504 TCCGAGCGCAACTTTCTCTT 59.966 50.0 11.47 0.00 0.00 2.85 F
120 121 0.037232 AACTTTCTCTTCGGGCCTCG 60.037 55.0 0.84 4.76 40.90 4.63 F
390 391 0.038166 GCATTGGTCCTGGTTCTGGA 59.962 55.0 0.00 0.00 0.00 3.86 F
394 395 0.105194 TGGTCCTGGTTCTGGACTGA 60.105 55.0 18.71 7.60 46.87 3.41 F
1081 1219 0.108377 CCGGATCCGTGTTCACATCA 60.108 55.0 31.22 0.00 37.81 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1060 1160 0.175760 ATGTGAACACGGATCCGGAG 59.824 55.000 35.87 28.64 44.69 4.63 R
1926 2116 0.833834 AGCAGCAGTAGTCCCACACT 60.834 55.000 0.00 0.00 39.41 3.55 R
1956 2146 2.836360 TCGTCGCCTATCCCCCAC 60.836 66.667 0.00 0.00 0.00 4.61 R
2318 2514 6.441924 TCCATCTGAATTCTCAAGGACTAGTT 59.558 38.462 7.05 0.00 0.00 2.24 R
3048 3456 0.389025 CCCAGCTTTTTGTCACCACC 59.611 55.000 0.00 0.00 0.00 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.743928 GAACCCCGCACTGAGCAG 60.744 66.667 0.00 0.00 46.13 4.24
21 22 2.979676 CCCGCACTGAGCAGCAAA 60.980 61.111 0.00 0.00 46.13 3.68
22 23 2.338015 CCCGCACTGAGCAGCAAAT 61.338 57.895 0.00 0.00 46.13 2.32
23 24 1.154093 CCGCACTGAGCAGCAAATG 60.154 57.895 0.00 0.00 46.13 2.32
36 37 1.701704 GCAAATGCTTCCTTTGTCCG 58.298 50.000 0.00 0.00 36.26 4.79
37 38 1.669795 GCAAATGCTTCCTTTGTCCGG 60.670 52.381 0.00 0.00 36.26 5.14
38 39 1.885887 CAAATGCTTCCTTTGTCCGGA 59.114 47.619 0.00 0.00 0.00 5.14
39 40 2.493278 CAAATGCTTCCTTTGTCCGGAT 59.507 45.455 7.81 0.00 0.00 4.18
40 41 1.755179 ATGCTTCCTTTGTCCGGATG 58.245 50.000 7.81 0.00 0.00 3.51
41 42 0.322456 TGCTTCCTTTGTCCGGATGG 60.322 55.000 7.81 8.45 0.00 3.51
42 43 1.032114 GCTTCCTTTGTCCGGATGGG 61.032 60.000 7.81 8.03 35.24 4.00
43 44 0.328258 CTTCCTTTGTCCGGATGGGT 59.672 55.000 7.81 0.00 37.00 4.51
44 45 0.774908 TTCCTTTGTCCGGATGGGTT 59.225 50.000 7.81 0.00 37.00 4.11
45 46 0.326927 TCCTTTGTCCGGATGGGTTC 59.673 55.000 7.81 0.00 37.00 3.62
46 47 0.037590 CCTTTGTCCGGATGGGTTCA 59.962 55.000 7.81 0.00 37.00 3.18
47 48 1.546773 CCTTTGTCCGGATGGGTTCAA 60.547 52.381 7.81 2.57 37.00 2.69
48 49 2.446435 CTTTGTCCGGATGGGTTCAAT 58.554 47.619 7.81 0.00 37.00 2.57
49 50 2.122783 TTGTCCGGATGGGTTCAATC 57.877 50.000 7.81 0.00 37.00 2.67
50 51 0.107897 TGTCCGGATGGGTTCAATCG 60.108 55.000 7.81 0.00 37.00 3.34
51 52 0.814010 GTCCGGATGGGTTCAATCGG 60.814 60.000 7.81 0.00 40.95 4.18
52 53 1.223487 CCGGATGGGTTCAATCGGT 59.777 57.895 0.00 0.00 37.57 4.69
53 54 0.393808 CCGGATGGGTTCAATCGGTT 60.394 55.000 0.00 0.00 37.57 4.44
54 55 0.732571 CGGATGGGTTCAATCGGTTG 59.267 55.000 0.70 0.70 36.65 3.77
55 56 1.102978 GGATGGGTTCAATCGGTTGG 58.897 55.000 8.88 0.00 35.99 3.77
56 57 0.455815 GATGGGTTCAATCGGTTGGC 59.544 55.000 8.88 1.97 35.99 4.52
57 58 0.970427 ATGGGTTCAATCGGTTGGCC 60.970 55.000 8.88 11.08 35.99 5.36
78 79 4.228097 GCGCGCGATTGCTGTGAT 62.228 61.111 37.18 0.00 39.65 3.06
79 80 2.053638 CGCGCGATTGCTGTGATC 60.054 61.111 28.94 0.00 39.65 2.92
80 81 2.520039 CGCGCGATTGCTGTGATCT 61.520 57.895 28.94 0.00 39.65 2.75
81 82 1.275066 GCGCGATTGCTGTGATCTC 59.725 57.895 12.10 0.00 39.65 2.75
82 83 1.423721 GCGCGATTGCTGTGATCTCA 61.424 55.000 12.10 0.00 39.65 3.27
83 84 1.001624 CGCGATTGCTGTGATCTCAA 58.998 50.000 0.00 0.00 39.65 3.02
84 85 1.394572 CGCGATTGCTGTGATCTCAAA 59.605 47.619 0.00 0.00 39.65 2.69
85 86 2.778659 GCGATTGCTGTGATCTCAAAC 58.221 47.619 0.00 0.00 38.39 2.93
86 87 2.476854 GCGATTGCTGTGATCTCAAACC 60.477 50.000 0.00 0.00 38.39 3.27
87 88 3.005554 CGATTGCTGTGATCTCAAACCT 58.994 45.455 0.00 0.00 0.00 3.50
88 89 3.438087 CGATTGCTGTGATCTCAAACCTT 59.562 43.478 0.00 0.00 0.00 3.50
89 90 4.083110 CGATTGCTGTGATCTCAAACCTTT 60.083 41.667 0.00 0.00 0.00 3.11
90 91 4.836125 TTGCTGTGATCTCAAACCTTTC 57.164 40.909 0.00 0.00 0.00 2.62
91 92 3.819368 TGCTGTGATCTCAAACCTTTCA 58.181 40.909 0.00 0.00 0.00 2.69
92 93 4.401022 TGCTGTGATCTCAAACCTTTCAT 58.599 39.130 0.00 0.00 0.00 2.57
93 94 4.456911 TGCTGTGATCTCAAACCTTTCATC 59.543 41.667 0.00 0.00 0.00 2.92
94 95 4.142513 GCTGTGATCTCAAACCTTTCATCC 60.143 45.833 0.00 0.00 0.00 3.51
95 96 4.002982 TGTGATCTCAAACCTTTCATCCG 58.997 43.478 0.00 0.00 0.00 4.18
96 97 4.253685 GTGATCTCAAACCTTTCATCCGA 58.746 43.478 0.00 0.00 0.00 4.55
97 98 4.331168 GTGATCTCAAACCTTTCATCCGAG 59.669 45.833 0.00 0.00 0.00 4.63
98 99 2.699954 TCTCAAACCTTTCATCCGAGC 58.300 47.619 0.00 0.00 0.00 5.03
99 100 1.394917 CTCAAACCTTTCATCCGAGCG 59.605 52.381 0.00 0.00 0.00 5.03
100 101 0.179189 CAAACCTTTCATCCGAGCGC 60.179 55.000 0.00 0.00 0.00 5.92
101 102 0.605319 AAACCTTTCATCCGAGCGCA 60.605 50.000 11.47 0.00 0.00 6.09
102 103 0.605319 AACCTTTCATCCGAGCGCAA 60.605 50.000 11.47 0.00 0.00 4.85
103 104 1.298859 ACCTTTCATCCGAGCGCAAC 61.299 55.000 11.47 1.68 0.00 4.17
104 105 1.021390 CCTTTCATCCGAGCGCAACT 61.021 55.000 11.47 0.00 0.00 3.16
105 106 0.798776 CTTTCATCCGAGCGCAACTT 59.201 50.000 11.47 0.00 0.00 2.66
106 107 1.197721 CTTTCATCCGAGCGCAACTTT 59.802 47.619 11.47 0.00 0.00 2.66
107 108 0.796312 TTCATCCGAGCGCAACTTTC 59.204 50.000 11.47 0.00 0.00 2.62
108 109 0.037326 TCATCCGAGCGCAACTTTCT 60.037 50.000 11.47 0.00 0.00 2.52
109 110 0.371645 CATCCGAGCGCAACTTTCTC 59.628 55.000 11.47 0.00 0.00 2.87
110 111 0.247736 ATCCGAGCGCAACTTTCTCT 59.752 50.000 11.47 0.00 0.00 3.10
111 112 0.033504 TCCGAGCGCAACTTTCTCTT 59.966 50.000 11.47 0.00 0.00 2.85
112 113 0.440371 CCGAGCGCAACTTTCTCTTC 59.560 55.000 11.47 0.00 0.00 2.87
113 114 0.092014 CGAGCGCAACTTTCTCTTCG 59.908 55.000 11.47 1.38 0.00 3.79
114 115 0.440371 GAGCGCAACTTTCTCTTCGG 59.560 55.000 11.47 0.00 0.00 4.30
115 116 0.951040 AGCGCAACTTTCTCTTCGGG 60.951 55.000 11.47 0.00 0.00 5.14
116 117 1.497722 CGCAACTTTCTCTTCGGGC 59.502 57.895 0.00 0.00 0.00 6.13
117 118 1.876664 GCAACTTTCTCTTCGGGCC 59.123 57.895 0.00 0.00 0.00 5.80
118 119 0.606673 GCAACTTTCTCTTCGGGCCT 60.607 55.000 0.84 0.00 0.00 5.19
119 120 1.443802 CAACTTTCTCTTCGGGCCTC 58.556 55.000 0.84 0.00 0.00 4.70
120 121 0.037232 AACTTTCTCTTCGGGCCTCG 60.037 55.000 0.84 4.76 40.90 4.63
121 122 1.186267 ACTTTCTCTTCGGGCCTCGT 61.186 55.000 0.84 0.00 40.32 4.18
122 123 0.458716 CTTTCTCTTCGGGCCTCGTC 60.459 60.000 0.84 0.00 40.32 4.20
123 124 0.898789 TTTCTCTTCGGGCCTCGTCT 60.899 55.000 0.84 0.00 40.32 4.18
124 125 1.313812 TTCTCTTCGGGCCTCGTCTC 61.314 60.000 0.84 0.00 40.32 3.36
125 126 1.751162 CTCTTCGGGCCTCGTCTCT 60.751 63.158 0.84 0.00 40.32 3.10
126 127 1.304217 TCTTCGGGCCTCGTCTCTT 60.304 57.895 0.84 0.00 40.32 2.85
127 128 0.898789 TCTTCGGGCCTCGTCTCTTT 60.899 55.000 0.84 0.00 40.32 2.52
128 129 0.815734 CTTCGGGCCTCGTCTCTTTA 59.184 55.000 0.84 0.00 40.32 1.85
129 130 0.529378 TTCGGGCCTCGTCTCTTTAC 59.471 55.000 0.84 0.00 40.32 2.01
130 131 1.141234 CGGGCCTCGTCTCTTTACC 59.859 63.158 0.84 0.00 0.00 2.85
131 132 1.141234 GGGCCTCGTCTCTTTACCG 59.859 63.158 0.84 0.00 0.00 4.02
132 133 1.318158 GGGCCTCGTCTCTTTACCGA 61.318 60.000 0.84 0.00 0.00 4.69
133 134 0.529378 GGCCTCGTCTCTTTACCGAA 59.471 55.000 0.00 0.00 0.00 4.30
134 135 1.469423 GGCCTCGTCTCTTTACCGAAG 60.469 57.143 0.00 0.00 36.67 3.79
135 136 1.201880 GCCTCGTCTCTTTACCGAAGT 59.798 52.381 0.00 0.00 36.70 3.01
136 137 2.352519 GCCTCGTCTCTTTACCGAAGTT 60.353 50.000 0.00 0.00 36.70 2.66
137 138 3.243336 CCTCGTCTCTTTACCGAAGTTG 58.757 50.000 0.00 0.00 36.70 3.16
138 139 3.305199 CCTCGTCTCTTTACCGAAGTTGT 60.305 47.826 0.00 0.00 36.70 3.32
139 140 3.635331 TCGTCTCTTTACCGAAGTTGTG 58.365 45.455 0.00 0.00 36.70 3.33
140 141 2.155155 CGTCTCTTTACCGAAGTTGTGC 59.845 50.000 0.00 0.00 36.70 4.57
141 142 3.391049 GTCTCTTTACCGAAGTTGTGCT 58.609 45.455 0.00 0.00 36.70 4.40
142 143 3.429207 GTCTCTTTACCGAAGTTGTGCTC 59.571 47.826 0.00 0.00 36.70 4.26
143 144 2.400399 TCTTTACCGAAGTTGTGCTCG 58.600 47.619 0.00 0.00 36.70 5.03
144 145 2.034939 TCTTTACCGAAGTTGTGCTCGA 59.965 45.455 0.00 0.00 36.70 4.04
145 146 2.736144 TTACCGAAGTTGTGCTCGAT 57.264 45.000 0.00 0.00 0.00 3.59
146 147 2.273370 TACCGAAGTTGTGCTCGATC 57.727 50.000 0.00 0.00 0.00 3.69
147 148 0.389948 ACCGAAGTTGTGCTCGATCC 60.390 55.000 0.00 0.00 0.00 3.36
148 149 1.413767 CCGAAGTTGTGCTCGATCCG 61.414 60.000 0.00 0.00 0.00 4.18
149 150 1.413767 CGAAGTTGTGCTCGATCCGG 61.414 60.000 0.00 0.00 0.00 5.14
150 151 0.108804 GAAGTTGTGCTCGATCCGGA 60.109 55.000 6.61 6.61 0.00 5.14
151 152 0.108615 AAGTTGTGCTCGATCCGGAG 60.109 55.000 11.34 0.00 37.11 4.63
213 214 8.984891 ATGTGTACATACCAAAACAATGAATG 57.015 30.769 0.00 0.00 34.26 2.67
214 215 6.865726 TGTGTACATACCAAAACAATGAATGC 59.134 34.615 0.00 0.00 0.00 3.56
215 216 6.865726 GTGTACATACCAAAACAATGAATGCA 59.134 34.615 0.00 0.00 0.00 3.96
216 217 7.545265 GTGTACATACCAAAACAATGAATGCAT 59.455 33.333 0.00 0.00 35.92 3.96
217 218 7.758980 TGTACATACCAAAACAATGAATGCATC 59.241 33.333 0.00 0.00 32.35 3.91
218 219 6.699366 ACATACCAAAACAATGAATGCATCA 58.301 32.000 0.00 0.00 43.67 3.07
219 220 7.160049 ACATACCAAAACAATGAATGCATCAA 58.840 30.769 0.00 0.00 42.54 2.57
220 221 7.825270 ACATACCAAAACAATGAATGCATCAAT 59.175 29.630 0.00 0.00 42.54 2.57
221 222 8.670135 CATACCAAAACAATGAATGCATCAATT 58.330 29.630 0.00 0.00 42.54 2.32
222 223 9.887629 ATACCAAAACAATGAATGCATCAATTA 57.112 25.926 0.00 0.00 42.54 1.40
223 224 8.259049 ACCAAAACAATGAATGCATCAATTAG 57.741 30.769 0.00 1.79 42.54 1.73
224 225 7.148373 ACCAAAACAATGAATGCATCAATTAGC 60.148 33.333 0.00 0.00 42.54 3.09
225 226 7.065324 CCAAAACAATGAATGCATCAATTAGCT 59.935 33.333 0.00 0.00 42.54 3.32
226 227 9.089601 CAAAACAATGAATGCATCAATTAGCTA 57.910 29.630 0.00 0.00 42.54 3.32
227 228 8.867112 AAACAATGAATGCATCAATTAGCTAG 57.133 30.769 0.00 0.00 42.54 3.42
228 229 7.578310 ACAATGAATGCATCAATTAGCTAGT 57.422 32.000 0.00 0.00 42.54 2.57
229 230 7.646314 ACAATGAATGCATCAATTAGCTAGTC 58.354 34.615 0.00 0.00 42.54 2.59
230 231 7.283807 ACAATGAATGCATCAATTAGCTAGTCA 59.716 33.333 0.00 0.00 42.54 3.41
231 232 6.856135 TGAATGCATCAATTAGCTAGTCAG 57.144 37.500 0.00 0.00 34.30 3.51
232 233 5.237996 TGAATGCATCAATTAGCTAGTCAGC 59.762 40.000 0.00 0.00 40.90 4.26
233 234 7.131915 TGAATGCATCAATTAGCTAGTCAGCA 61.132 38.462 0.00 9.14 42.17 4.41
234 235 9.061234 TGAATGCATCAATTAGCTAGTCAGCAC 62.061 40.741 0.00 1.49 42.17 4.40
255 256 6.863275 GCACAGGCTTAACTAATATTTTGGT 58.137 36.000 0.00 0.00 36.96 3.67
256 257 6.972901 GCACAGGCTTAACTAATATTTTGGTC 59.027 38.462 0.00 0.00 36.96 4.02
257 258 7.480810 CACAGGCTTAACTAATATTTTGGTCC 58.519 38.462 0.00 0.00 0.00 4.46
258 259 7.339466 CACAGGCTTAACTAATATTTTGGTCCT 59.661 37.037 0.00 0.00 0.00 3.85
259 260 7.339466 ACAGGCTTAACTAATATTTTGGTCCTG 59.661 37.037 12.72 12.72 38.99 3.86
260 261 6.833933 AGGCTTAACTAATATTTTGGTCCTGG 59.166 38.462 0.00 0.00 0.00 4.45
261 262 6.605995 GGCTTAACTAATATTTTGGTCCTGGT 59.394 38.462 0.00 0.00 0.00 4.00
262 263 7.123697 GGCTTAACTAATATTTTGGTCCTGGTT 59.876 37.037 0.00 0.00 0.00 3.67
263 264 8.188799 GCTTAACTAATATTTTGGTCCTGGTTC 58.811 37.037 0.00 0.00 0.00 3.62
264 265 6.753107 AACTAATATTTTGGTCCTGGTTCG 57.247 37.500 0.00 0.00 0.00 3.95
265 266 5.812286 ACTAATATTTTGGTCCTGGTTCGT 58.188 37.500 0.00 0.00 0.00 3.85
266 267 5.878669 ACTAATATTTTGGTCCTGGTTCGTC 59.121 40.000 0.00 0.00 0.00 4.20
267 268 2.951229 ATTTTGGTCCTGGTTCGTCT 57.049 45.000 0.00 0.00 0.00 4.18
268 269 1.961793 TTTTGGTCCTGGTTCGTCTG 58.038 50.000 0.00 0.00 0.00 3.51
269 270 0.107831 TTTGGTCCTGGTTCGTCTGG 59.892 55.000 0.00 0.00 0.00 3.86
270 271 2.047179 GGTCCTGGTTCGTCTGGC 60.047 66.667 0.00 0.00 0.00 4.85
271 272 2.047179 GTCCTGGTTCGTCTGGCC 60.047 66.667 0.00 0.00 0.00 5.36
272 273 3.319198 TCCTGGTTCGTCTGGCCC 61.319 66.667 0.00 0.00 0.00 5.80
273 274 4.410400 CCTGGTTCGTCTGGCCCC 62.410 72.222 0.00 0.00 0.00 5.80
274 275 3.322466 CTGGTTCGTCTGGCCCCT 61.322 66.667 0.00 0.00 0.00 4.79
275 276 2.852075 TGGTTCGTCTGGCCCCTT 60.852 61.111 0.00 0.00 0.00 3.95
276 277 2.411765 CTGGTTCGTCTGGCCCCTTT 62.412 60.000 0.00 0.00 0.00 3.11
277 278 1.971695 GGTTCGTCTGGCCCCTTTG 60.972 63.158 0.00 0.00 0.00 2.77
278 279 1.971695 GTTCGTCTGGCCCCTTTGG 60.972 63.158 0.00 0.00 37.09 3.28
279 280 2.457323 TTCGTCTGGCCCCTTTGGT 61.457 57.895 0.00 0.00 36.04 3.67
280 281 2.359975 CGTCTGGCCCCTTTGGTC 60.360 66.667 0.00 0.00 40.11 4.02
281 282 2.035783 GTCTGGCCCCTTTGGTCC 59.964 66.667 0.00 0.00 38.27 4.46
282 283 3.264845 TCTGGCCCCTTTGGTCCC 61.265 66.667 0.00 0.00 38.27 4.46
283 284 4.740822 CTGGCCCCTTTGGTCCCG 62.741 72.222 0.00 0.00 38.27 5.14
286 287 4.295199 GCCCCTTTGGTCCCGGTT 62.295 66.667 0.00 0.00 36.04 4.44
287 288 2.282887 CCCCTTTGGTCCCGGTTG 60.283 66.667 0.00 0.00 0.00 3.77
288 289 2.282887 CCCTTTGGTCCCGGTTGG 60.283 66.667 0.00 0.00 0.00 3.77
289 290 2.836187 CCCTTTGGTCCCGGTTGGA 61.836 63.158 0.00 0.00 42.41 3.53
296 297 2.840576 TCCCGGTTGGACCAAAGG 59.159 61.111 18.49 18.49 38.47 3.11
297 298 2.282887 CCCGGTTGGACCAAAGGG 60.283 66.667 25.97 25.97 38.47 3.95
298 299 2.282887 CCGGTTGGACCAAAGGGG 60.283 66.667 17.93 11.94 38.47 4.79
299 300 2.989253 CGGTTGGACCAAAGGGGC 60.989 66.667 8.94 0.00 43.93 5.80
305 306 2.359975 GACCAAAGGGGCCAGACG 60.360 66.667 4.39 0.00 42.05 4.18
306 307 2.852075 ACCAAAGGGGCCAGACGA 60.852 61.111 4.39 0.00 42.05 4.20
307 308 2.406002 GACCAAAGGGGCCAGACGAA 62.406 60.000 4.39 0.00 42.05 3.85
308 309 1.971695 CCAAAGGGGCCAGACGAAC 60.972 63.158 4.39 0.00 0.00 3.95
309 310 1.971695 CAAAGGGGCCAGACGAACC 60.972 63.158 4.39 0.00 0.00 3.62
310 311 3.546714 AAAGGGGCCAGACGAACCG 62.547 63.158 4.39 0.00 0.00 4.44
314 315 4.754667 GGCCAGACGAACCGGGAC 62.755 72.222 6.32 0.00 0.00 4.46
315 316 4.754667 GCCAGACGAACCGGGACC 62.755 72.222 6.32 0.00 0.00 4.46
316 317 3.307906 CCAGACGAACCGGGACCA 61.308 66.667 6.32 0.00 0.00 4.02
317 318 2.738480 CAGACGAACCGGGACCAA 59.262 61.111 6.32 0.00 0.00 3.67
318 319 1.295423 CAGACGAACCGGGACCAAT 59.705 57.895 6.32 0.00 0.00 3.16
319 320 1.019278 CAGACGAACCGGGACCAATG 61.019 60.000 6.32 0.00 0.00 2.82
320 321 2.359478 ACGAACCGGGACCAATGC 60.359 61.111 6.32 0.00 0.00 3.56
321 322 3.131478 CGAACCGGGACCAATGCC 61.131 66.667 6.32 0.00 0.00 4.40
322 323 2.754254 GAACCGGGACCAATGCCC 60.754 66.667 6.32 0.00 42.41 5.36
323 324 4.376170 AACCGGGACCAATGCCCC 62.376 66.667 6.32 0.00 42.92 5.80
328 329 4.041762 GGACCAATGCCCCCACGA 62.042 66.667 0.00 0.00 0.00 4.35
329 330 2.438434 GACCAATGCCCCCACGAG 60.438 66.667 0.00 0.00 0.00 4.18
330 331 3.995506 GACCAATGCCCCCACGAGG 62.996 68.421 0.00 0.00 0.00 4.63
357 358 4.410400 CCCCTGGCCTCACGAACC 62.410 72.222 3.32 0.00 0.00 3.62
358 359 4.760047 CCCTGGCCTCACGAACCG 62.760 72.222 3.32 0.00 0.00 4.44
359 360 4.760047 CCTGGCCTCACGAACCGG 62.760 72.222 3.32 0.00 0.00 5.28
360 361 4.760047 CTGGCCTCACGAACCGGG 62.760 72.222 6.32 0.00 0.00 5.73
362 363 4.754667 GGCCTCACGAACCGGGAC 62.755 72.222 6.32 0.00 32.99 4.46
363 364 4.754667 GCCTCACGAACCGGGACC 62.755 72.222 6.32 0.00 32.99 4.46
364 365 3.307906 CCTCACGAACCGGGACCA 61.308 66.667 6.32 0.00 32.99 4.02
365 366 2.261671 CTCACGAACCGGGACCAG 59.738 66.667 6.32 0.00 32.99 4.00
366 367 2.522436 TCACGAACCGGGACCAGT 60.522 61.111 6.32 0.00 32.99 4.00
367 368 2.357034 CACGAACCGGGACCAGTG 60.357 66.667 6.32 4.87 28.17 3.66
368 369 4.309950 ACGAACCGGGACCAGTGC 62.310 66.667 6.32 0.00 0.00 4.40
370 371 4.717313 GAACCGGGACCAGTGCCC 62.717 72.222 6.32 0.00 42.41 5.36
375 376 4.740822 GGGACCAGTGCCCGCATT 62.741 66.667 0.00 0.00 35.50 3.56
376 377 3.443045 GGACCAGTGCCCGCATTG 61.443 66.667 5.28 5.28 34.11 2.82
379 380 3.443045 CCAGTGCCCGCATTGGTC 61.443 66.667 19.93 0.00 45.22 4.02
380 381 3.443045 CAGTGCCCGCATTGGTCC 61.443 66.667 4.39 0.00 35.15 4.46
381 382 3.650950 AGTGCCCGCATTGGTCCT 61.651 61.111 0.00 0.00 35.15 3.85
382 383 3.443045 GTGCCCGCATTGGTCCTG 61.443 66.667 0.00 0.00 35.15 3.86
383 384 4.738998 TGCCCGCATTGGTCCTGG 62.739 66.667 0.00 0.00 35.15 4.45
384 385 4.740822 GCCCGCATTGGTCCTGGT 62.741 66.667 0.00 0.00 35.15 4.00
385 386 2.035626 CCCGCATTGGTCCTGGTT 59.964 61.111 0.00 0.00 35.15 3.67
386 387 2.046285 CCCGCATTGGTCCTGGTTC 61.046 63.158 0.00 0.00 35.15 3.62
387 388 1.002134 CCGCATTGGTCCTGGTTCT 60.002 57.895 0.00 0.00 0.00 3.01
388 389 1.308069 CCGCATTGGTCCTGGTTCTG 61.308 60.000 0.00 0.00 0.00 3.02
389 390 1.308069 CGCATTGGTCCTGGTTCTGG 61.308 60.000 0.00 0.00 0.00 3.86
390 391 0.038166 GCATTGGTCCTGGTTCTGGA 59.962 55.000 0.00 0.00 0.00 3.86
391 392 1.826385 CATTGGTCCTGGTTCTGGAC 58.174 55.000 13.37 13.37 46.94 4.02
392 393 1.352352 CATTGGTCCTGGTTCTGGACT 59.648 52.381 18.71 2.44 46.87 3.85
393 394 0.764890 TTGGTCCTGGTTCTGGACTG 59.235 55.000 18.71 0.00 46.87 3.51
394 395 0.105194 TGGTCCTGGTTCTGGACTGA 60.105 55.000 18.71 7.60 46.87 3.41
395 396 1.056660 GGTCCTGGTTCTGGACTGAA 58.943 55.000 18.71 0.00 46.87 3.02
396 397 1.270893 GGTCCTGGTTCTGGACTGAAC 60.271 57.143 18.71 12.04 46.87 3.18
400 401 4.695560 GTTCTGGACTGAACCGGG 57.304 61.111 6.32 0.00 40.10 5.73
401 402 2.055299 GTTCTGGACTGAACCGGGA 58.945 57.895 6.32 0.00 40.10 5.14
402 403 0.320508 GTTCTGGACTGAACCGGGAC 60.321 60.000 6.32 0.00 40.10 4.46
403 404 0.471211 TTCTGGACTGAACCGGGACT 60.471 55.000 6.32 0.00 36.97 3.85
404 405 0.406750 TCTGGACTGAACCGGGACTA 59.593 55.000 6.32 0.00 36.97 2.59
405 406 1.203087 TCTGGACTGAACCGGGACTAA 60.203 52.381 6.32 0.00 36.97 2.24
406 407 1.831736 CTGGACTGAACCGGGACTAAT 59.168 52.381 6.32 0.00 33.06 1.73
407 408 1.553248 TGGACTGAACCGGGACTAATG 59.447 52.381 6.32 0.00 0.00 1.90
408 409 1.134491 GGACTGAACCGGGACTAATGG 60.134 57.143 6.32 0.00 0.00 3.16
409 410 0.909623 ACTGAACCGGGACTAATGGG 59.090 55.000 6.32 0.00 0.00 4.00
410 411 0.463833 CTGAACCGGGACTAATGGGC 60.464 60.000 6.32 0.00 0.00 5.36
411 412 0.912487 TGAACCGGGACTAATGGGCT 60.912 55.000 6.32 0.00 0.00 5.19
412 413 0.463833 GAACCGGGACTAATGGGCTG 60.464 60.000 6.32 0.00 0.00 4.85
413 414 0.912487 AACCGGGACTAATGGGCTGA 60.912 55.000 6.32 0.00 0.00 4.26
414 415 1.146263 CCGGGACTAATGGGCTGAC 59.854 63.158 0.00 0.00 0.00 3.51
415 416 1.146263 CGGGACTAATGGGCTGACC 59.854 63.158 0.00 0.00 40.81 4.02
425 426 3.134127 GGCTGACCCGGCATGAAC 61.134 66.667 0.00 0.00 37.51 3.18
426 427 3.134127 GCTGACCCGGCATGAACC 61.134 66.667 0.00 0.00 35.55 3.62
427 428 2.350895 CTGACCCGGCATGAACCA 59.649 61.111 0.00 0.00 0.00 3.67
428 429 1.303236 CTGACCCGGCATGAACCAA 60.303 57.895 0.00 0.00 0.00 3.67
429 430 0.893270 CTGACCCGGCATGAACCAAA 60.893 55.000 0.00 0.00 0.00 3.28
430 431 0.893270 TGACCCGGCATGAACCAAAG 60.893 55.000 0.00 0.00 0.00 2.77
431 432 2.212900 GACCCGGCATGAACCAAAGC 62.213 60.000 0.00 0.00 0.00 3.51
432 433 2.573340 CCGGCATGAACCAAAGCC 59.427 61.111 0.00 0.00 43.61 4.35
433 434 2.573340 CGGCATGAACCAAAGCCC 59.427 61.111 0.00 0.00 44.18 5.19
434 435 1.978617 CGGCATGAACCAAAGCCCT 60.979 57.895 0.00 0.00 44.18 5.19
435 436 1.893062 GGCATGAACCAAAGCCCTC 59.107 57.895 0.00 0.00 41.25 4.30
436 437 0.613012 GGCATGAACCAAAGCCCTCT 60.613 55.000 0.00 0.00 41.25 3.69
437 438 1.260544 GCATGAACCAAAGCCCTCTT 58.739 50.000 0.00 0.00 0.00 2.85
438 439 1.620323 GCATGAACCAAAGCCCTCTTT 59.380 47.619 0.00 0.00 42.92 2.52
439 440 2.037641 GCATGAACCAAAGCCCTCTTTT 59.962 45.455 0.00 0.00 40.35 2.27
440 441 3.862264 GCATGAACCAAAGCCCTCTTTTC 60.862 47.826 0.00 0.00 40.35 2.29
441 442 3.312736 TGAACCAAAGCCCTCTTTTCT 57.687 42.857 0.00 0.00 40.35 2.52
442 443 4.447138 TGAACCAAAGCCCTCTTTTCTA 57.553 40.909 0.00 0.00 40.35 2.10
443 444 4.142038 TGAACCAAAGCCCTCTTTTCTAC 58.858 43.478 0.00 0.00 40.35 2.59
444 445 4.141251 TGAACCAAAGCCCTCTTTTCTACT 60.141 41.667 0.00 0.00 40.35 2.57
445 446 5.072600 TGAACCAAAGCCCTCTTTTCTACTA 59.927 40.000 0.00 0.00 40.35 1.82
446 447 5.167303 ACCAAAGCCCTCTTTTCTACTAG 57.833 43.478 0.00 0.00 40.35 2.57
498 507 5.817816 CCAAAACTCTTCAACTACAGTGTCT 59.182 40.000 0.00 0.00 0.00 3.41
540 558 1.213537 GTGCATGTGGTGATGGTGC 59.786 57.895 0.00 0.00 36.39 5.01
598 634 5.466728 CACTCGATGTTTCTTGGAAAAGAGA 59.533 40.000 15.53 6.13 0.00 3.10
599 635 5.698545 ACTCGATGTTTCTTGGAAAAGAGAG 59.301 40.000 15.53 13.27 0.00 3.20
653 689 6.290592 CGGATCGACGAAACGAATATATGATG 60.291 42.308 16.45 0.00 45.16 3.07
655 691 5.765176 TCGACGAAACGAATATATGATGGT 58.235 37.500 0.00 0.00 39.34 3.55
697 733 2.025605 AGAGGCAATCATCAGCAAGGAA 60.026 45.455 0.00 0.00 0.00 3.36
715 751 2.213499 GAAGACATATGCGACCCCTTG 58.787 52.381 1.58 0.00 0.00 3.61
716 752 0.469917 AGACATATGCGACCCCTTGG 59.530 55.000 1.58 0.00 37.80 3.61
761 797 4.564782 CCATCATCCATGGCACTATAGT 57.435 45.455 6.96 0.00 46.18 2.12
763 799 6.053632 CCATCATCCATGGCACTATAGTTA 57.946 41.667 6.96 0.00 46.18 2.24
764 800 6.475504 CCATCATCCATGGCACTATAGTTAA 58.524 40.000 6.96 0.00 46.18 2.01
832 914 3.239587 GCTTATCGCTATCTTCCTCCC 57.760 52.381 0.00 0.00 35.14 4.30
1036 1136 0.393537 GTGGCTCTTGATCCCACCAG 60.394 60.000 6.79 0.00 42.44 4.00
1060 1160 0.798776 CGCACCACCAACATCTTCTC 59.201 55.000 0.00 0.00 0.00 2.87
1065 1165 1.406069 CCACCAACATCTTCTCTCCGG 60.406 57.143 0.00 0.00 0.00 5.14
1081 1219 0.108377 CCGGATCCGTGTTCACATCA 60.108 55.000 31.22 0.00 37.81 3.07
1082 1220 1.674519 CCGGATCCGTGTTCACATCAA 60.675 52.381 31.22 0.00 37.81 2.57
1083 1221 1.660607 CGGATCCGTGTTCACATCAAG 59.339 52.381 26.35 0.00 34.35 3.02
1084 1222 2.673893 CGGATCCGTGTTCACATCAAGA 60.674 50.000 26.35 0.00 34.35 3.02
1085 1223 3.334691 GGATCCGTGTTCACATCAAGAA 58.665 45.455 0.00 0.00 0.00 2.52
1086 1224 3.372206 GGATCCGTGTTCACATCAAGAAG 59.628 47.826 0.00 0.00 0.00 2.85
1087 1225 3.744238 TCCGTGTTCACATCAAGAAGA 57.256 42.857 3.87 0.00 0.00 2.87
1088 1226 4.271696 TCCGTGTTCACATCAAGAAGAT 57.728 40.909 3.87 0.00 37.48 2.40
1089 1227 5.400066 TCCGTGTTCACATCAAGAAGATA 57.600 39.130 3.87 0.00 34.43 1.98
1090 1228 5.789521 TCCGTGTTCACATCAAGAAGATAA 58.210 37.500 3.87 0.00 34.43 1.75
1095 1233 7.467623 GTGTTCACATCAAGAAGATAACATCC 58.532 38.462 0.00 0.00 35.98 3.51
1103 1241 9.286170 CATCAAGAAGATAACATCCATGAAGAT 57.714 33.333 0.00 0.00 34.43 2.40
1111 1249 4.498894 ACATCCATGAAGATGAAGCAGA 57.501 40.909 16.12 0.00 45.43 4.26
1113 1251 2.897436 TCCATGAAGATGAAGCAGACG 58.103 47.619 0.00 0.00 0.00 4.18
1114 1252 2.497273 TCCATGAAGATGAAGCAGACGA 59.503 45.455 0.00 0.00 0.00 4.20
1115 1253 3.055891 TCCATGAAGATGAAGCAGACGAA 60.056 43.478 0.00 0.00 0.00 3.85
1116 1254 3.309138 CCATGAAGATGAAGCAGACGAAG 59.691 47.826 0.00 0.00 0.00 3.79
1120 1258 4.021981 TGAAGATGAAGCAGACGAAGAAGA 60.022 41.667 0.00 0.00 0.00 2.87
1122 1260 2.051879 TGAAGCAGACGAAGAAGACG 57.948 50.000 0.00 0.00 0.00 4.18
1123 1261 1.337071 TGAAGCAGACGAAGAAGACGT 59.663 47.619 0.00 0.00 46.58 4.34
1164 1305 1.973812 GGAGGAAGCAGTTGCACCC 60.974 63.158 6.90 6.77 45.16 4.61
1341 1505 2.104967 CATGCATGTCTGGGACCAAAT 58.895 47.619 18.91 0.00 0.00 2.32
1342 1506 3.289836 CATGCATGTCTGGGACCAAATA 58.710 45.455 18.91 0.00 0.00 1.40
1344 1508 3.088532 TGCATGTCTGGGACCAAATAAC 58.911 45.455 0.00 0.00 0.00 1.89
1485 1654 3.000819 TACCTGCACCCGGACCTG 61.001 66.667 0.73 0.00 0.00 4.00
1651 1820 4.228567 TCCACAAGGACACGCGCA 62.229 61.111 5.73 0.00 39.61 6.09
1686 1873 2.660064 GGCCTCCACGTCCATGTCT 61.660 63.158 0.00 0.00 0.00 3.41
1824 2014 3.760035 CTGCTCTACACCGCCGGT 61.760 66.667 1.02 1.02 35.62 5.28
1956 2146 2.510012 TGCTGCTCGGATTCGCTG 60.510 61.111 0.00 0.00 36.13 5.18
1998 2188 3.511934 AGGTCGAGTACAAGAAGATGCTT 59.488 43.478 0.00 0.00 0.00 3.91
2382 2581 7.865706 AAAGATTTGACCACCATGAGTATAC 57.134 36.000 0.00 0.00 0.00 1.47
2448 2651 8.795513 ACAGACACAATATGTTCATTCATTCAA 58.204 29.630 0.00 0.00 43.56 2.69
2764 3161 2.456577 TCATCTGATCGTTCCTGTCCA 58.543 47.619 0.00 0.00 0.00 4.02
2924 3331 1.001815 GCAGTACTCCTCGCTGAGATC 60.002 57.143 7.86 0.00 36.22 2.75
3048 3456 5.665916 AAGGGAGCATGGAGTTAAAAATG 57.334 39.130 0.00 0.00 0.00 2.32
3065 3473 3.457610 AATGGTGGTGACAAAAAGCTG 57.542 42.857 0.00 0.00 46.06 4.24
3092 3500 0.108186 TGTGTGATAAGGAGCCAGCG 60.108 55.000 0.00 0.00 0.00 5.18
3292 3701 4.214310 TCATCTTCCCACTTTTTCTGCAA 58.786 39.130 0.00 0.00 0.00 4.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.743928 CTGCTCAGTGCGGGGTTC 60.744 66.667 0.00 0.00 46.63 3.62
6 7 4.452753 CATTTGCTGCTCAGTGCG 57.547 55.556 0.00 0.00 46.63 5.34
17 18 1.669795 CCGGACAAAGGAAGCATTTGC 60.670 52.381 0.00 0.00 40.54 3.68
18 19 1.885887 TCCGGACAAAGGAAGCATTTG 59.114 47.619 0.00 3.36 42.17 2.32
19 20 2.286365 TCCGGACAAAGGAAGCATTT 57.714 45.000 0.00 0.00 34.33 2.32
20 21 2.094675 CATCCGGACAAAGGAAGCATT 58.905 47.619 6.12 0.00 41.69 3.56
21 22 1.683011 CCATCCGGACAAAGGAAGCAT 60.683 52.381 6.12 0.00 41.69 3.79
22 23 0.322456 CCATCCGGACAAAGGAAGCA 60.322 55.000 6.12 0.00 41.69 3.91
23 24 1.032114 CCCATCCGGACAAAGGAAGC 61.032 60.000 6.12 0.00 41.69 3.86
24 25 0.328258 ACCCATCCGGACAAAGGAAG 59.672 55.000 6.12 0.00 41.69 3.46
25 26 0.774908 AACCCATCCGGACAAAGGAA 59.225 50.000 6.12 0.00 41.69 3.36
26 27 0.326927 GAACCCATCCGGACAAAGGA 59.673 55.000 6.12 0.00 42.69 3.36
27 28 0.037590 TGAACCCATCCGGACAAAGG 59.962 55.000 6.12 7.92 34.64 3.11
28 29 1.904287 TTGAACCCATCCGGACAAAG 58.096 50.000 6.12 0.00 32.06 2.77
29 30 2.442413 GATTGAACCCATCCGGACAAA 58.558 47.619 6.12 0.00 36.01 2.83
30 31 1.677518 CGATTGAACCCATCCGGACAA 60.678 52.381 6.12 5.73 36.50 3.18
31 32 0.107897 CGATTGAACCCATCCGGACA 60.108 55.000 6.12 0.00 34.64 4.02
32 33 0.814010 CCGATTGAACCCATCCGGAC 60.814 60.000 6.12 0.00 38.83 4.79
33 34 1.268992 ACCGATTGAACCCATCCGGA 61.269 55.000 6.61 6.61 38.83 5.14
34 35 0.393808 AACCGATTGAACCCATCCGG 60.394 55.000 0.00 0.00 40.81 5.14
35 36 0.732571 CAACCGATTGAACCCATCCG 59.267 55.000 0.00 0.00 38.15 4.18
36 37 1.102978 CCAACCGATTGAACCCATCC 58.897 55.000 0.00 0.00 38.15 3.51
37 38 0.455815 GCCAACCGATTGAACCCATC 59.544 55.000 0.00 0.00 38.15 3.51
38 39 0.970427 GGCCAACCGATTGAACCCAT 60.970 55.000 0.00 0.00 38.15 4.00
39 40 1.605165 GGCCAACCGATTGAACCCA 60.605 57.895 0.00 0.00 38.15 4.51
40 41 3.284336 GGCCAACCGATTGAACCC 58.716 61.111 0.00 0.00 38.15 4.11
61 62 4.228097 ATCACAGCAATCGCGCGC 62.228 61.111 27.95 23.91 45.49 6.86
62 63 2.053638 GATCACAGCAATCGCGCG 60.054 61.111 26.76 26.76 45.49 6.86
63 64 1.275066 GAGATCACAGCAATCGCGC 59.725 57.895 0.00 0.00 45.49 6.86
64 65 1.001624 TTGAGATCACAGCAATCGCG 58.998 50.000 0.00 0.00 45.49 5.87
65 66 2.476854 GGTTTGAGATCACAGCAATCGC 60.477 50.000 0.00 0.00 38.99 4.58
66 67 3.005554 AGGTTTGAGATCACAGCAATCG 58.994 45.455 0.00 0.00 0.00 3.34
67 68 5.048504 TGAAAGGTTTGAGATCACAGCAATC 60.049 40.000 0.00 0.40 0.00 2.67
68 69 4.828939 TGAAAGGTTTGAGATCACAGCAAT 59.171 37.500 0.00 0.00 0.00 3.56
69 70 4.206375 TGAAAGGTTTGAGATCACAGCAA 58.794 39.130 0.00 0.00 0.00 3.91
70 71 3.819368 TGAAAGGTTTGAGATCACAGCA 58.181 40.909 0.00 0.00 0.00 4.41
71 72 4.142513 GGATGAAAGGTTTGAGATCACAGC 60.143 45.833 0.00 0.00 0.00 4.40
72 73 4.093998 CGGATGAAAGGTTTGAGATCACAG 59.906 45.833 0.00 0.00 0.00 3.66
73 74 4.002982 CGGATGAAAGGTTTGAGATCACA 58.997 43.478 0.00 0.00 0.00 3.58
74 75 4.253685 TCGGATGAAAGGTTTGAGATCAC 58.746 43.478 0.00 0.00 0.00 3.06
75 76 4.507710 CTCGGATGAAAGGTTTGAGATCA 58.492 43.478 0.00 0.00 0.00 2.92
76 77 3.311048 GCTCGGATGAAAGGTTTGAGATC 59.689 47.826 0.00 0.00 0.00 2.75
77 78 3.274288 GCTCGGATGAAAGGTTTGAGAT 58.726 45.455 0.00 0.00 0.00 2.75
78 79 2.699954 GCTCGGATGAAAGGTTTGAGA 58.300 47.619 0.00 0.00 0.00 3.27
79 80 1.394917 CGCTCGGATGAAAGGTTTGAG 59.605 52.381 0.00 0.00 0.00 3.02
80 81 1.438651 CGCTCGGATGAAAGGTTTGA 58.561 50.000 0.00 0.00 0.00 2.69
81 82 0.179189 GCGCTCGGATGAAAGGTTTG 60.179 55.000 0.00 0.00 0.00 2.93
82 83 0.605319 TGCGCTCGGATGAAAGGTTT 60.605 50.000 9.73 0.00 0.00 3.27
83 84 0.605319 TTGCGCTCGGATGAAAGGTT 60.605 50.000 9.73 0.00 0.00 3.50
84 85 1.003839 TTGCGCTCGGATGAAAGGT 60.004 52.632 9.73 0.00 0.00 3.50
85 86 1.021390 AGTTGCGCTCGGATGAAAGG 61.021 55.000 9.73 0.00 0.00 3.11
86 87 0.798776 AAGTTGCGCTCGGATGAAAG 59.201 50.000 9.73 0.00 0.00 2.62
87 88 1.196808 GAAAGTTGCGCTCGGATGAAA 59.803 47.619 9.73 0.00 0.00 2.69
88 89 0.796312 GAAAGTTGCGCTCGGATGAA 59.204 50.000 9.73 0.00 0.00 2.57
89 90 0.037326 AGAAAGTTGCGCTCGGATGA 60.037 50.000 9.73 0.00 0.00 2.92
90 91 0.371645 GAGAAAGTTGCGCTCGGATG 59.628 55.000 9.73 0.00 0.00 3.51
91 92 0.247736 AGAGAAAGTTGCGCTCGGAT 59.752 50.000 9.73 0.00 33.98 4.18
92 93 0.033504 AAGAGAAAGTTGCGCTCGGA 59.966 50.000 9.73 0.00 33.98 4.55
93 94 0.440371 GAAGAGAAAGTTGCGCTCGG 59.560 55.000 9.73 0.00 33.98 4.63
94 95 0.092014 CGAAGAGAAAGTTGCGCTCG 59.908 55.000 9.73 0.74 33.98 5.03
95 96 0.440371 CCGAAGAGAAAGTTGCGCTC 59.560 55.000 9.73 1.40 0.00 5.03
96 97 0.951040 CCCGAAGAGAAAGTTGCGCT 60.951 55.000 9.73 0.00 0.00 5.92
97 98 1.497722 CCCGAAGAGAAAGTTGCGC 59.502 57.895 0.00 0.00 0.00 6.09
98 99 1.497722 GCCCGAAGAGAAAGTTGCG 59.502 57.895 0.00 0.00 0.00 4.85
99 100 0.606673 AGGCCCGAAGAGAAAGTTGC 60.607 55.000 0.00 0.00 0.00 4.17
100 101 1.443802 GAGGCCCGAAGAGAAAGTTG 58.556 55.000 0.00 0.00 0.00 3.16
101 102 0.037232 CGAGGCCCGAAGAGAAAGTT 60.037 55.000 0.00 0.00 41.76 2.66
102 103 1.186267 ACGAGGCCCGAAGAGAAAGT 61.186 55.000 18.74 0.00 41.76 2.66
103 104 0.458716 GACGAGGCCCGAAGAGAAAG 60.459 60.000 18.74 0.00 41.76 2.62
104 105 0.898789 AGACGAGGCCCGAAGAGAAA 60.899 55.000 18.74 0.00 41.76 2.52
105 106 1.304217 AGACGAGGCCCGAAGAGAA 60.304 57.895 18.74 0.00 41.76 2.87
106 107 1.749638 GAGACGAGGCCCGAAGAGA 60.750 63.158 18.74 0.00 41.76 3.10
107 108 1.316706 AAGAGACGAGGCCCGAAGAG 61.317 60.000 18.74 0.00 41.76 2.85
108 109 0.898789 AAAGAGACGAGGCCCGAAGA 60.899 55.000 18.74 0.00 41.76 2.87
109 110 0.815734 TAAAGAGACGAGGCCCGAAG 59.184 55.000 18.74 1.91 41.76 3.79
110 111 0.529378 GTAAAGAGACGAGGCCCGAA 59.471 55.000 18.74 0.00 41.76 4.30
111 112 1.318158 GGTAAAGAGACGAGGCCCGA 61.318 60.000 18.74 0.00 41.76 5.14
112 113 1.141234 GGTAAAGAGACGAGGCCCG 59.859 63.158 11.48 11.48 45.44 6.13
113 114 1.141234 CGGTAAAGAGACGAGGCCC 59.859 63.158 0.00 0.00 0.00 5.80
114 115 0.529378 TTCGGTAAAGAGACGAGGCC 59.471 55.000 0.00 0.00 37.95 5.19
115 116 1.201880 ACTTCGGTAAAGAGACGAGGC 59.798 52.381 0.00 0.00 37.24 4.70
116 117 3.243336 CAACTTCGGTAAAGAGACGAGG 58.757 50.000 0.00 0.00 38.44 4.63
117 118 3.669122 CACAACTTCGGTAAAGAGACGAG 59.331 47.826 0.00 0.00 38.44 4.18
118 119 3.635331 CACAACTTCGGTAAAGAGACGA 58.365 45.455 0.00 0.00 38.44 4.20
119 120 2.155155 GCACAACTTCGGTAAAGAGACG 59.845 50.000 0.00 0.00 38.44 4.18
120 121 3.391049 AGCACAACTTCGGTAAAGAGAC 58.609 45.455 0.00 0.00 38.44 3.36
121 122 3.650139 GAGCACAACTTCGGTAAAGAGA 58.350 45.455 0.00 0.00 38.44 3.10
122 123 2.408704 CGAGCACAACTTCGGTAAAGAG 59.591 50.000 0.00 0.00 38.44 2.85
123 124 2.034939 TCGAGCACAACTTCGGTAAAGA 59.965 45.455 0.00 0.00 38.44 2.52
124 125 2.400399 TCGAGCACAACTTCGGTAAAG 58.600 47.619 0.00 0.00 41.08 1.85
125 126 2.512485 TCGAGCACAACTTCGGTAAA 57.488 45.000 0.00 0.00 0.00 2.01
126 127 2.602878 GATCGAGCACAACTTCGGTAA 58.397 47.619 0.00 0.00 0.00 2.85
127 128 1.135199 GGATCGAGCACAACTTCGGTA 60.135 52.381 1.84 0.00 0.00 4.02
128 129 0.389948 GGATCGAGCACAACTTCGGT 60.390 55.000 1.84 0.00 0.00 4.69
129 130 1.413767 CGGATCGAGCACAACTTCGG 61.414 60.000 1.84 0.00 0.00 4.30
130 131 1.413767 CCGGATCGAGCACAACTTCG 61.414 60.000 1.84 0.00 0.00 3.79
131 132 0.108804 TCCGGATCGAGCACAACTTC 60.109 55.000 0.00 0.00 0.00 3.01
132 133 0.108615 CTCCGGATCGAGCACAACTT 60.109 55.000 3.57 0.00 0.00 2.66
133 134 1.513158 CTCCGGATCGAGCACAACT 59.487 57.895 3.57 0.00 0.00 3.16
134 135 1.519455 CCTCCGGATCGAGCACAAC 60.519 63.158 3.57 0.00 0.00 3.32
135 136 1.680989 TCCTCCGGATCGAGCACAA 60.681 57.895 3.57 0.00 0.00 3.33
136 137 2.044352 TCCTCCGGATCGAGCACA 60.044 61.111 3.57 0.00 0.00 4.57
137 138 0.818445 TAGTCCTCCGGATCGAGCAC 60.818 60.000 3.57 0.00 32.73 4.40
138 139 0.535328 CTAGTCCTCCGGATCGAGCA 60.535 60.000 3.57 0.00 32.73 4.26
139 140 0.250381 TCTAGTCCTCCGGATCGAGC 60.250 60.000 3.57 0.00 32.73 5.03
140 141 2.257691 TTCTAGTCCTCCGGATCGAG 57.742 55.000 3.57 4.97 32.73 4.04
141 142 2.723322 TTTCTAGTCCTCCGGATCGA 57.277 50.000 3.57 0.00 32.73 3.59
142 143 3.795623 TTTTTCTAGTCCTCCGGATCG 57.204 47.619 3.57 0.00 32.73 3.69
188 189 7.545265 GCATTCATTGTTTTGGTATGTACACAT 59.455 33.333 0.00 0.00 40.22 3.21
189 190 6.865726 GCATTCATTGTTTTGGTATGTACACA 59.134 34.615 0.00 0.00 0.00 3.72
190 191 6.865726 TGCATTCATTGTTTTGGTATGTACAC 59.134 34.615 0.00 0.00 0.00 2.90
191 192 6.986250 TGCATTCATTGTTTTGGTATGTACA 58.014 32.000 0.00 0.00 0.00 2.90
192 193 7.758980 TGATGCATTCATTGTTTTGGTATGTAC 59.241 33.333 0.00 0.00 31.96 2.90
193 194 7.834803 TGATGCATTCATTGTTTTGGTATGTA 58.165 30.769 0.00 0.00 31.96 2.29
194 195 6.699366 TGATGCATTCATTGTTTTGGTATGT 58.301 32.000 0.00 0.00 31.96 2.29
195 196 7.598189 TTGATGCATTCATTGTTTTGGTATG 57.402 32.000 0.00 0.00 33.34 2.39
196 197 8.795842 AATTGATGCATTCATTGTTTTGGTAT 57.204 26.923 0.00 0.00 33.34 2.73
197 198 9.368674 CTAATTGATGCATTCATTGTTTTGGTA 57.631 29.630 0.00 0.00 33.34 3.25
198 199 7.148373 GCTAATTGATGCATTCATTGTTTTGGT 60.148 33.333 0.00 0.00 33.34 3.67
199 200 7.065324 AGCTAATTGATGCATTCATTGTTTTGG 59.935 33.333 0.00 0.00 33.34 3.28
200 201 7.970384 AGCTAATTGATGCATTCATTGTTTTG 58.030 30.769 0.00 0.00 33.34 2.44
201 202 9.309516 CTAGCTAATTGATGCATTCATTGTTTT 57.690 29.630 0.00 0.00 33.34 2.43
202 203 8.472413 ACTAGCTAATTGATGCATTCATTGTTT 58.528 29.630 0.00 0.00 33.34 2.83
203 204 8.004087 ACTAGCTAATTGATGCATTCATTGTT 57.996 30.769 0.00 0.21 33.34 2.83
204 205 7.283807 TGACTAGCTAATTGATGCATTCATTGT 59.716 33.333 0.00 0.00 33.34 2.71
205 206 7.645402 TGACTAGCTAATTGATGCATTCATTG 58.355 34.615 0.00 0.00 33.34 2.82
206 207 7.521748 GCTGACTAGCTAATTGATGCATTCATT 60.522 37.037 0.00 5.11 46.57 2.57
207 208 6.072618 GCTGACTAGCTAATTGATGCATTCAT 60.073 38.462 0.00 0.00 46.57 2.57
208 209 5.237996 GCTGACTAGCTAATTGATGCATTCA 59.762 40.000 0.00 0.00 46.57 2.57
209 210 5.687828 GCTGACTAGCTAATTGATGCATTC 58.312 41.667 0.00 0.00 46.57 2.67
210 211 5.686159 GCTGACTAGCTAATTGATGCATT 57.314 39.130 0.00 0.00 46.57 3.56
231 232 6.863275 ACCAAAATATTAGTTAAGCCTGTGC 58.137 36.000 0.00 0.00 37.95 4.57
232 233 7.339466 AGGACCAAAATATTAGTTAAGCCTGTG 59.661 37.037 0.00 0.00 0.00 3.66
233 234 7.339466 CAGGACCAAAATATTAGTTAAGCCTGT 59.661 37.037 0.00 0.00 33.75 4.00
234 235 7.201821 CCAGGACCAAAATATTAGTTAAGCCTG 60.202 40.741 0.00 0.00 37.11 4.85
235 236 6.833933 CCAGGACCAAAATATTAGTTAAGCCT 59.166 38.462 0.00 0.00 0.00 4.58
236 237 6.605995 ACCAGGACCAAAATATTAGTTAAGCC 59.394 38.462 0.00 0.00 0.00 4.35
237 238 7.640597 ACCAGGACCAAAATATTAGTTAAGC 57.359 36.000 0.00 0.00 0.00 3.09
238 239 8.395633 CGAACCAGGACCAAAATATTAGTTAAG 58.604 37.037 0.00 0.00 0.00 1.85
239 240 7.884354 ACGAACCAGGACCAAAATATTAGTTAA 59.116 33.333 0.00 0.00 0.00 2.01
240 241 7.396418 ACGAACCAGGACCAAAATATTAGTTA 58.604 34.615 0.00 0.00 0.00 2.24
241 242 6.243148 ACGAACCAGGACCAAAATATTAGTT 58.757 36.000 0.00 0.00 0.00 2.24
242 243 5.812286 ACGAACCAGGACCAAAATATTAGT 58.188 37.500 0.00 0.00 0.00 2.24
243 244 6.037172 CAGACGAACCAGGACCAAAATATTAG 59.963 42.308 0.00 0.00 0.00 1.73
244 245 5.878116 CAGACGAACCAGGACCAAAATATTA 59.122 40.000 0.00 0.00 0.00 0.98
245 246 4.700213 CAGACGAACCAGGACCAAAATATT 59.300 41.667 0.00 0.00 0.00 1.28
246 247 4.261801 CAGACGAACCAGGACCAAAATAT 58.738 43.478 0.00 0.00 0.00 1.28
247 248 3.558321 CCAGACGAACCAGGACCAAAATA 60.558 47.826 0.00 0.00 0.00 1.40
248 249 2.504367 CAGACGAACCAGGACCAAAAT 58.496 47.619 0.00 0.00 0.00 1.82
249 250 1.476110 CCAGACGAACCAGGACCAAAA 60.476 52.381 0.00 0.00 0.00 2.44
250 251 0.107831 CCAGACGAACCAGGACCAAA 59.892 55.000 0.00 0.00 0.00 3.28
251 252 1.752198 CCAGACGAACCAGGACCAA 59.248 57.895 0.00 0.00 0.00 3.67
252 253 2.879233 GCCAGACGAACCAGGACCA 61.879 63.158 0.00 0.00 0.00 4.02
253 254 2.047179 GCCAGACGAACCAGGACC 60.047 66.667 0.00 0.00 0.00 4.46
254 255 2.047179 GGCCAGACGAACCAGGAC 60.047 66.667 0.00 0.00 0.00 3.85
255 256 3.319198 GGGCCAGACGAACCAGGA 61.319 66.667 4.39 0.00 0.00 3.86
256 257 4.410400 GGGGCCAGACGAACCAGG 62.410 72.222 4.39 0.00 0.00 4.45
257 258 2.411765 AAAGGGGCCAGACGAACCAG 62.412 60.000 4.39 0.00 0.00 4.00
258 259 2.457323 AAAGGGGCCAGACGAACCA 61.457 57.895 4.39 0.00 0.00 3.67
259 260 1.971695 CAAAGGGGCCAGACGAACC 60.972 63.158 4.39 0.00 0.00 3.62
260 261 1.971695 CCAAAGGGGCCAGACGAAC 60.972 63.158 4.39 0.00 0.00 3.95
261 262 2.406002 GACCAAAGGGGCCAGACGAA 62.406 60.000 4.39 0.00 42.05 3.85
262 263 2.852075 ACCAAAGGGGCCAGACGA 60.852 61.111 4.39 0.00 42.05 4.20
263 264 2.359975 GACCAAAGGGGCCAGACG 60.360 66.667 4.39 0.00 42.05 4.18
269 270 4.295199 AACCGGGACCAAAGGGGC 62.295 66.667 6.32 0.00 43.93 5.80
270 271 2.282887 CAACCGGGACCAAAGGGG 60.283 66.667 6.32 0.00 44.81 4.79
271 272 2.282887 CCAACCGGGACCAAAGGG 60.283 66.667 6.32 0.00 40.01 3.95
272 273 2.840576 TCCAACCGGGACCAAAGG 59.159 61.111 6.32 0.00 42.15 3.11
279 280 2.836187 CCCTTTGGTCCAACCGGGA 61.836 63.158 24.92 3.00 42.58 5.14
280 281 2.282887 CCCTTTGGTCCAACCGGG 60.283 66.667 19.12 19.12 42.58 5.73
281 282 2.282887 CCCCTTTGGTCCAACCGG 60.283 66.667 2.98 7.92 42.58 5.28
282 283 2.989253 GCCCCTTTGGTCCAACCG 60.989 66.667 2.98 0.00 42.58 4.44
283 284 2.603473 GGCCCCTTTGGTCCAACC 60.603 66.667 2.98 0.00 39.22 3.77
284 285 1.908299 CTGGCCCCTTTGGTCCAAC 60.908 63.158 2.98 0.00 38.27 3.77
285 286 2.088096 TCTGGCCCCTTTGGTCCAA 61.088 57.895 0.00 0.00 38.27 3.53
286 287 2.451493 TCTGGCCCCTTTGGTCCA 60.451 61.111 0.00 0.00 38.27 4.02
287 288 2.035783 GTCTGGCCCCTTTGGTCC 59.964 66.667 0.00 0.00 38.27 4.46
288 289 2.359975 CGTCTGGCCCCTTTGGTC 60.360 66.667 0.00 0.00 40.11 4.02
289 290 2.457323 TTCGTCTGGCCCCTTTGGT 61.457 57.895 0.00 0.00 36.04 3.67
290 291 1.971695 GTTCGTCTGGCCCCTTTGG 60.972 63.158 0.00 0.00 37.09 3.28
291 292 1.971695 GGTTCGTCTGGCCCCTTTG 60.972 63.158 0.00 0.00 0.00 2.77
292 293 2.434774 GGTTCGTCTGGCCCCTTT 59.565 61.111 0.00 0.00 0.00 3.11
293 294 4.016706 CGGTTCGTCTGGCCCCTT 62.017 66.667 0.00 0.00 0.00 3.95
297 298 4.754667 GTCCCGGTTCGTCTGGCC 62.755 72.222 0.00 0.00 41.11 5.36
298 299 4.754667 GGTCCCGGTTCGTCTGGC 62.755 72.222 0.00 0.00 41.11 4.85
299 300 2.180159 ATTGGTCCCGGTTCGTCTGG 62.180 60.000 0.00 2.18 42.06 3.86
300 301 1.019278 CATTGGTCCCGGTTCGTCTG 61.019 60.000 0.00 0.00 0.00 3.51
301 302 1.295423 CATTGGTCCCGGTTCGTCT 59.705 57.895 0.00 0.00 0.00 4.18
302 303 2.396157 GCATTGGTCCCGGTTCGTC 61.396 63.158 0.00 0.00 0.00 4.20
303 304 2.359478 GCATTGGTCCCGGTTCGT 60.359 61.111 0.00 0.00 0.00 3.85
304 305 3.131478 GGCATTGGTCCCGGTTCG 61.131 66.667 0.00 0.00 0.00 3.95
305 306 2.754254 GGGCATTGGTCCCGGTTC 60.754 66.667 0.00 0.00 33.43 3.62
311 312 3.995506 CTCGTGGGGGCATTGGTCC 62.996 68.421 0.00 0.00 38.40 4.46
312 313 2.438434 CTCGTGGGGGCATTGGTC 60.438 66.667 0.00 0.00 0.00 4.02
313 314 4.047125 CCTCGTGGGGGCATTGGT 62.047 66.667 0.00 0.00 0.00 3.67
340 341 4.410400 GGTTCGTGAGGCCAGGGG 62.410 72.222 5.01 0.00 0.00 4.79
341 342 4.760047 CGGTTCGTGAGGCCAGGG 62.760 72.222 5.01 0.00 0.00 4.45
342 343 4.760047 CCGGTTCGTGAGGCCAGG 62.760 72.222 5.01 0.00 0.00 4.45
343 344 4.760047 CCCGGTTCGTGAGGCCAG 62.760 72.222 5.01 0.00 0.00 4.85
345 346 4.754667 GTCCCGGTTCGTGAGGCC 62.755 72.222 0.00 0.00 0.00 5.19
346 347 4.754667 GGTCCCGGTTCGTGAGGC 62.755 72.222 0.00 0.00 0.00 4.70
347 348 3.296709 CTGGTCCCGGTTCGTGAGG 62.297 68.421 0.00 0.00 0.00 3.86
348 349 2.261671 CTGGTCCCGGTTCGTGAG 59.738 66.667 0.00 0.00 0.00 3.51
349 350 2.522436 ACTGGTCCCGGTTCGTGA 60.522 61.111 0.00 0.00 30.14 4.35
350 351 2.357034 CACTGGTCCCGGTTCGTG 60.357 66.667 0.00 0.00 32.44 4.35
351 352 4.309950 GCACTGGTCCCGGTTCGT 62.310 66.667 0.00 0.00 32.44 3.85
353 354 4.717313 GGGCACTGGTCCCGGTTC 62.717 72.222 0.00 0.00 33.43 3.62
358 359 4.740822 AATGCGGGCACTGGTCCC 62.741 66.667 0.00 0.00 40.43 4.46
359 360 3.443045 CAATGCGGGCACTGGTCC 61.443 66.667 0.00 0.00 34.57 4.46
360 361 3.443045 CCAATGCGGGCACTGGTC 61.443 66.667 12.70 0.00 38.39 4.02
367 368 4.740822 ACCAGGACCAATGCGGGC 62.741 66.667 0.00 0.00 45.59 6.13
368 369 2.035626 AACCAGGACCAATGCGGG 59.964 61.111 0.00 0.00 40.22 6.13
369 370 1.002134 AGAACCAGGACCAATGCGG 60.002 57.895 0.00 0.00 42.50 5.69
370 371 1.308069 CCAGAACCAGGACCAATGCG 61.308 60.000 0.00 0.00 0.00 4.73
371 372 0.038166 TCCAGAACCAGGACCAATGC 59.962 55.000 0.00 0.00 0.00 3.56
383 384 0.320508 GTCCCGGTTCAGTCCAGAAC 60.321 60.000 0.00 0.00 45.50 3.01
384 385 0.471211 AGTCCCGGTTCAGTCCAGAA 60.471 55.000 0.00 0.00 0.00 3.02
385 386 0.406750 TAGTCCCGGTTCAGTCCAGA 59.593 55.000 0.00 0.00 0.00 3.86
386 387 1.263356 TTAGTCCCGGTTCAGTCCAG 58.737 55.000 0.00 0.00 0.00 3.86
387 388 1.553248 CATTAGTCCCGGTTCAGTCCA 59.447 52.381 0.00 0.00 0.00 4.02
388 389 1.134491 CCATTAGTCCCGGTTCAGTCC 60.134 57.143 0.00 0.00 0.00 3.85
389 390 1.134491 CCCATTAGTCCCGGTTCAGTC 60.134 57.143 0.00 0.00 0.00 3.51
390 391 0.909623 CCCATTAGTCCCGGTTCAGT 59.090 55.000 0.00 0.00 0.00 3.41
391 392 0.463833 GCCCATTAGTCCCGGTTCAG 60.464 60.000 0.00 0.00 0.00 3.02
392 393 0.912487 AGCCCATTAGTCCCGGTTCA 60.912 55.000 0.00 0.00 0.00 3.18
393 394 0.463833 CAGCCCATTAGTCCCGGTTC 60.464 60.000 0.00 0.00 0.00 3.62
394 395 0.912487 TCAGCCCATTAGTCCCGGTT 60.912 55.000 0.00 0.00 0.00 4.44
395 396 1.306654 TCAGCCCATTAGTCCCGGT 60.307 57.895 0.00 0.00 0.00 5.28
396 397 1.146263 GTCAGCCCATTAGTCCCGG 59.854 63.158 0.00 0.00 0.00 5.73
397 398 1.146263 GGTCAGCCCATTAGTCCCG 59.854 63.158 0.00 0.00 0.00 5.14
408 409 3.134127 GTTCATGCCGGGTCAGCC 61.134 66.667 2.18 0.00 0.00 4.85
409 410 3.134127 GGTTCATGCCGGGTCAGC 61.134 66.667 2.18 0.00 0.00 4.26
410 411 0.893270 TTTGGTTCATGCCGGGTCAG 60.893 55.000 2.18 0.00 0.00 3.51
411 412 0.893270 CTTTGGTTCATGCCGGGTCA 60.893 55.000 2.18 0.00 0.00 4.02
412 413 1.883021 CTTTGGTTCATGCCGGGTC 59.117 57.895 2.18 0.00 0.00 4.46
413 414 2.275380 GCTTTGGTTCATGCCGGGT 61.275 57.895 2.18 0.00 0.00 5.28
414 415 2.573340 GCTTTGGTTCATGCCGGG 59.427 61.111 2.18 0.00 0.00 5.73
415 416 2.573340 GGCTTTGGTTCATGCCGG 59.427 61.111 0.00 0.00 35.79 6.13
416 417 1.937546 GAGGGCTTTGGTTCATGCCG 61.938 60.000 0.00 0.00 45.75 5.69
417 418 0.613012 AGAGGGCTTTGGTTCATGCC 60.613 55.000 0.00 0.00 44.22 4.40
418 419 1.260544 AAGAGGGCTTTGGTTCATGC 58.739 50.000 0.00 0.00 0.00 4.06
419 420 3.575687 AGAAAAGAGGGCTTTGGTTCATG 59.424 43.478 0.00 0.00 43.32 3.07
420 421 3.849527 AGAAAAGAGGGCTTTGGTTCAT 58.150 40.909 0.00 0.00 43.32 2.57
421 422 3.312736 AGAAAAGAGGGCTTTGGTTCA 57.687 42.857 0.00 0.00 43.32 3.18
422 423 4.399219 AGTAGAAAAGAGGGCTTTGGTTC 58.601 43.478 0.00 0.00 43.32 3.62
423 424 4.455070 AGTAGAAAAGAGGGCTTTGGTT 57.545 40.909 0.00 0.00 43.32 3.67
424 425 4.597940 ACTAGTAGAAAAGAGGGCTTTGGT 59.402 41.667 3.59 0.00 43.32 3.67
425 426 4.938226 CACTAGTAGAAAAGAGGGCTTTGG 59.062 45.833 3.59 0.00 43.32 3.28
426 427 5.794894 TCACTAGTAGAAAAGAGGGCTTTG 58.205 41.667 3.59 0.00 43.32 2.77
427 428 6.628644 ATCACTAGTAGAAAAGAGGGCTTT 57.371 37.500 3.59 0.00 45.95 3.51
428 429 6.898521 ACTATCACTAGTAGAAAAGAGGGCTT 59.101 38.462 3.59 0.00 36.40 4.35
429 430 6.322712 CACTATCACTAGTAGAAAAGAGGGCT 59.677 42.308 3.59 0.00 35.99 5.19
430 431 6.321690 TCACTATCACTAGTAGAAAAGAGGGC 59.678 42.308 3.59 0.00 35.99 5.19
431 432 7.013846 CCTCACTATCACTAGTAGAAAAGAGGG 59.986 44.444 16.74 8.94 37.20 4.30
432 433 7.558444 ACCTCACTATCACTAGTAGAAAAGAGG 59.442 40.741 20.32 20.32 41.74 3.69
433 434 8.514330 ACCTCACTATCACTAGTAGAAAAGAG 57.486 38.462 3.59 0.01 35.99 2.85
434 435 9.393512 GTACCTCACTATCACTAGTAGAAAAGA 57.606 37.037 3.59 0.00 35.99 2.52
435 436 8.336806 CGTACCTCACTATCACTAGTAGAAAAG 58.663 40.741 3.59 1.63 35.99 2.27
436 437 7.201679 GCGTACCTCACTATCACTAGTAGAAAA 60.202 40.741 3.59 0.00 35.99 2.29
437 438 6.259608 GCGTACCTCACTATCACTAGTAGAAA 59.740 42.308 3.59 0.00 35.99 2.52
438 439 5.757320 GCGTACCTCACTATCACTAGTAGAA 59.243 44.000 3.59 0.00 35.99 2.10
439 440 5.295950 GCGTACCTCACTATCACTAGTAGA 58.704 45.833 3.59 0.00 35.99 2.59
440 441 4.150274 CGCGTACCTCACTATCACTAGTAG 59.850 50.000 0.00 0.00 35.99 2.57
441 442 4.053983 CGCGTACCTCACTATCACTAGTA 58.946 47.826 0.00 0.00 35.99 1.82
442 443 2.871022 CGCGTACCTCACTATCACTAGT 59.129 50.000 0.00 0.00 38.79 2.57
443 444 2.871022 ACGCGTACCTCACTATCACTAG 59.129 50.000 11.67 0.00 0.00 2.57
444 445 2.610833 CACGCGTACCTCACTATCACTA 59.389 50.000 13.44 0.00 0.00 2.74
445 446 1.400846 CACGCGTACCTCACTATCACT 59.599 52.381 13.44 0.00 0.00 3.41
446 447 1.533338 CCACGCGTACCTCACTATCAC 60.533 57.143 13.44 0.00 0.00 3.06
598 634 1.211456 CTGGCCCTCCATTTCTCTCT 58.789 55.000 0.00 0.00 42.51 3.10
599 635 0.465278 GCTGGCCCTCCATTTCTCTC 60.465 60.000 0.00 0.00 42.51 3.20
621 657 2.757155 TTTCGTCGATCCGTGCTGCA 62.757 55.000 0.00 0.00 0.00 4.41
622 658 2.092291 TTTCGTCGATCCGTGCTGC 61.092 57.895 0.00 0.00 0.00 5.25
653 689 5.699097 TTTTACCAAGTACAGCATCAACC 57.301 39.130 0.00 0.00 0.00 3.77
655 691 6.206634 CCTCTTTTTACCAAGTACAGCATCAA 59.793 38.462 0.00 0.00 0.00 2.57
697 733 0.469917 CCAAGGGGTCGCATATGTCT 59.530 55.000 4.29 0.00 0.00 3.41
715 751 7.288621 GGATCCATCCATCCATATTATTTTCCC 59.711 40.741 6.95 0.00 46.38 3.97
716 752 8.242729 GGATCCATCCATCCATATTATTTTCC 57.757 38.462 6.95 0.00 46.38 3.13
757 793 7.198390 GCTGATGTCAATGCACAATTAACTAT 58.802 34.615 0.00 0.00 0.00 2.12
759 795 5.404946 GCTGATGTCAATGCACAATTAACT 58.595 37.500 0.00 0.00 0.00 2.24
760 796 4.563976 GGCTGATGTCAATGCACAATTAAC 59.436 41.667 0.00 0.00 0.00 2.01
761 797 4.463539 AGGCTGATGTCAATGCACAATTAA 59.536 37.500 0.00 0.00 0.00 1.40
763 799 2.829720 AGGCTGATGTCAATGCACAATT 59.170 40.909 0.00 0.00 0.00 2.32
764 800 2.426024 GAGGCTGATGTCAATGCACAAT 59.574 45.455 0.00 0.00 0.00 2.71
832 914 3.857157 TTCCTTTCGATTGGGGATAGG 57.143 47.619 4.67 0.00 34.92 2.57
881 967 1.377072 CCATGGGCACACGTCATGA 60.377 57.895 13.96 0.00 40.28 3.07
928 1014 3.622826 TCTTATAGGCGGGCGGGC 61.623 66.667 10.77 10.77 42.69 6.13
930 1016 2.049433 CGTCTTATAGGCGGGCGG 60.049 66.667 0.00 0.00 40.10 6.13
1060 1160 0.175760 ATGTGAACACGGATCCGGAG 59.824 55.000 35.87 28.64 44.69 4.63
1065 1165 4.245660 TCTTCTTGATGTGAACACGGATC 58.754 43.478 0.57 0.46 0.00 3.36
1081 1219 9.339850 CTTCATCTTCATGGATGTTATCTTCTT 57.660 33.333 10.57 0.00 42.45 2.52
1082 1220 7.444792 GCTTCATCTTCATGGATGTTATCTTCT 59.555 37.037 10.57 0.00 42.45 2.85
1083 1221 7.228108 TGCTTCATCTTCATGGATGTTATCTTC 59.772 37.037 10.57 0.00 42.45 2.87
1084 1222 7.058525 TGCTTCATCTTCATGGATGTTATCTT 58.941 34.615 10.57 0.00 42.45 2.40
1085 1223 6.598503 TGCTTCATCTTCATGGATGTTATCT 58.401 36.000 10.57 0.00 42.45 1.98
1086 1224 6.709397 TCTGCTTCATCTTCATGGATGTTATC 59.291 38.462 10.57 0.00 42.45 1.75
1087 1225 6.485984 GTCTGCTTCATCTTCATGGATGTTAT 59.514 38.462 10.57 0.00 42.45 1.89
1088 1226 5.819379 GTCTGCTTCATCTTCATGGATGTTA 59.181 40.000 10.57 2.39 42.45 2.41
1089 1227 4.639310 GTCTGCTTCATCTTCATGGATGTT 59.361 41.667 10.57 0.00 42.45 2.71
1090 1228 4.197750 GTCTGCTTCATCTTCATGGATGT 58.802 43.478 10.57 0.00 42.45 3.06
1095 1233 4.179298 TCTTCGTCTGCTTCATCTTCATG 58.821 43.478 0.00 0.00 0.00 3.07
1103 1241 1.337071 ACGTCTTCTTCGTCTGCTTCA 59.663 47.619 0.00 0.00 36.85 3.02
1111 1249 2.126965 CGCCGACGTCTTCTTCGT 60.127 61.111 14.70 0.00 44.27 3.85
1113 1251 3.179939 GGCGCCGACGTCTTCTTC 61.180 66.667 12.58 0.00 41.84 2.87
1140 1281 0.879765 CAACTGCTTCCTCCTGCTTG 59.120 55.000 0.00 0.00 0.00 4.01
1144 1285 1.239968 GGTGCAACTGCTTCCTCCTG 61.240 60.000 0.00 0.00 42.66 3.86
1700 1887 3.941657 GAGGAGCTGGACGTGGTGC 62.942 68.421 0.00 0.00 0.00 5.01
1893 2083 1.300931 CGGCACTATCATGGACGGG 60.301 63.158 0.00 0.00 0.00 5.28
1899 2089 3.349006 GGCGGCGGCACTATCATG 61.349 66.667 29.41 0.00 42.47 3.07
1926 2116 0.833834 AGCAGCAGTAGTCCCACACT 60.834 55.000 0.00 0.00 39.41 3.55
1956 2146 2.836360 TCGTCGCCTATCCCCCAC 60.836 66.667 0.00 0.00 0.00 4.61
2318 2514 6.441924 TCCATCTGAATTCTCAAGGACTAGTT 59.558 38.462 7.05 0.00 0.00 2.24
2448 2651 3.185246 CCTACTTCGGCATCAACATCT 57.815 47.619 0.00 0.00 0.00 2.90
2764 3161 5.463154 AGATGGCTAGAGAAAGTAGGACAT 58.537 41.667 0.00 0.00 0.00 3.06
2924 3331 2.202797 CTGGCGATCCCTGTCACG 60.203 66.667 0.00 0.00 0.00 4.35
3048 3456 0.389025 CCCAGCTTTTTGTCACCACC 59.611 55.000 0.00 0.00 0.00 4.61
3065 3473 1.349688 TCCTTATCACACACACCACCC 59.650 52.381 0.00 0.00 0.00 4.61
3092 3500 1.284297 GCAAACAAGTTGATGCCGCC 61.284 55.000 20.45 1.92 39.87 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.