Multiple sequence alignment - TraesCS3D01G540200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G540200 chr3D 100.000 3232 0 0 1 3232 611672431 611675662 0.000000e+00 5969.0
1 TraesCS3D01G540200 chr3D 91.515 165 14 0 2526 2690 91102759 91102923 9.020000e-56 228.0
2 TraesCS3D01G540200 chr3D 90.909 165 15 0 2526 2690 467218696 467218860 4.200000e-54 222.0
3 TraesCS3D01G540200 chr3D 90.909 165 15 0 2526 2690 518229192 518229356 4.200000e-54 222.0
4 TraesCS3D01G540200 chr3B 91.950 2298 136 26 106 2379 829390854 829393126 0.000000e+00 3173.0
5 TraesCS3D01G540200 chr3B 89.414 444 32 4 2794 3232 829394012 829394445 2.190000e-151 545.0
6 TraesCS3D01G540200 chr3B 93.548 62 4 0 2346 2407 829393128 829393189 3.430000e-15 93.5
7 TraesCS3D01G540200 chr3B 88.571 70 8 0 477 546 52195345 52195276 5.750000e-13 86.1
8 TraesCS3D01G540200 chr3B 88.889 63 4 2 565 626 11068076 11068016 1.240000e-09 75.0
9 TraesCS3D01G540200 chr3A 91.718 2258 132 26 270 2505 746461588 746463812 0.000000e+00 3083.0
10 TraesCS3D01G540200 chr7A 92.624 705 48 4 1553 2254 487480407 487481110 0.000000e+00 1011.0
11 TraesCS3D01G540200 chr7A 89.538 411 43 0 1009 1419 487479246 487479656 3.700000e-144 521.0
12 TraesCS3D01G540200 chr7B 93.255 682 46 0 1553 2234 454182546 454183227 0.000000e+00 1005.0
13 TraesCS3D01G540200 chr7B 85.009 587 61 16 856 1419 454181456 454182038 3.620000e-159 571.0
14 TraesCS3D01G540200 chr7B 91.463 164 14 0 2526 2689 588256289 588256126 3.240000e-55 226.0
15 TraesCS3D01G540200 chr7B 91.463 164 14 0 2526 2689 588281071 588280908 3.240000e-55 226.0
16 TraesCS3D01G540200 chr7D 92.375 682 52 0 1553 2234 437203701 437204382 0.000000e+00 972.0
17 TraesCS3D01G540200 chr7D 84.760 584 65 13 856 1419 437202606 437203185 6.050000e-157 564.0
18 TraesCS3D01G540200 chr7D 91.515 165 14 0 2526 2690 415908575 415908411 9.020000e-56 228.0
19 TraesCS3D01G540200 chr7D 94.872 39 2 0 588 626 635663668 635663630 9.680000e-06 62.1
20 TraesCS3D01G540200 chr7D 86.275 51 5 2 2746 2795 439761415 439761464 2.000000e-03 54.7
21 TraesCS3D01G540200 chr6D 89.031 702 72 3 1557 2257 3345786 3345089 0.000000e+00 865.0
22 TraesCS3D01G540200 chr6D 79.285 671 92 23 756 1415 3347418 3346784 2.980000e-115 425.0
23 TraesCS3D01G540200 chr6D 82.684 462 52 11 1774 2234 3352523 3352089 5.060000e-103 385.0
24 TraesCS3D01G540200 chr6D 86.957 69 7 2 464 531 289354445 289354378 3.460000e-10 76.8
25 TraesCS3D01G540200 chr6B 89.016 701 74 1 1557 2257 6629203 6628506 0.000000e+00 865.0
26 TraesCS3D01G540200 chr6B 78.988 652 94 20 770 1415 6630725 6630111 3.880000e-109 405.0
27 TraesCS3D01G540200 chr6B 81.522 92 15 2 463 553 248063811 248063901 1.240000e-09 75.0
28 TraesCS3D01G540200 chr6A 87.749 702 81 3 1557 2257 2178697 2178000 0.000000e+00 815.0
29 TraesCS3D01G540200 chr6A 80.000 660 89 21 764 1415 2180896 2180272 6.360000e-122 448.0
30 TraesCS3D01G540200 chr1D 85.886 333 35 9 1115 1439 460527044 460527372 8.580000e-91 344.0
31 TraesCS3D01G540200 chr1D 91.515 165 14 0 2526 2690 345944239 345944075 9.020000e-56 228.0
32 TraesCS3D01G540200 chr1D 90.789 76 7 0 471 546 462713287 462713212 5.700000e-18 102.0
33 TraesCS3D01G540200 chr1D 88.889 81 9 0 471 551 428611419 428611499 2.050000e-17 100.0
34 TraesCS3D01G540200 chr4D 91.515 165 14 0 2526 2690 407092862 407093026 9.020000e-56 228.0
35 TraesCS3D01G540200 chr4D 91.515 165 14 0 2526 2690 446013747 446013911 9.020000e-56 228.0
36 TraesCS3D01G540200 chr2D 88.312 77 9 0 469 545 7912643 7912567 3.430000e-15 93.5
37 TraesCS3D01G540200 chr2B 93.651 63 3 1 471 533 207058686 207058625 3.430000e-15 93.5
38 TraesCS3D01G540200 chr5B 88.889 54 4 1 573 626 21530312 21530363 7.480000e-07 65.8
39 TraesCS3D01G540200 chr5B 87.719 57 4 3 572 626 635380617 635380672 2.690000e-06 63.9
40 TraesCS3D01G540200 chr5B 85.484 62 4 3 571 629 522620646 522620587 3.480000e-05 60.2
41 TraesCS3D01G540200 chr5B 96.774 31 1 0 2739 2769 309805366 309805396 6.000000e-03 52.8
42 TraesCS3D01G540200 chr4A 84.615 65 8 2 564 626 516689739 516689675 2.690000e-06 63.9
43 TraesCS3D01G540200 chr4A 87.273 55 4 2 573 626 688496614 688496562 3.480000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G540200 chr3D 611672431 611675662 3231 False 5969.0 5969 100.000000 1 3232 1 chr3D.!!$F4 3231
1 TraesCS3D01G540200 chr3B 829390854 829394445 3591 False 1270.5 3173 91.637333 106 3232 3 chr3B.!!$F1 3126
2 TraesCS3D01G540200 chr3A 746461588 746463812 2224 False 3083.0 3083 91.718000 270 2505 1 chr3A.!!$F1 2235
3 TraesCS3D01G540200 chr7A 487479246 487481110 1864 False 766.0 1011 91.081000 1009 2254 2 chr7A.!!$F1 1245
4 TraesCS3D01G540200 chr7B 454181456 454183227 1771 False 788.0 1005 89.132000 856 2234 2 chr7B.!!$F1 1378
5 TraesCS3D01G540200 chr7D 437202606 437204382 1776 False 768.0 972 88.567500 856 2234 2 chr7D.!!$F2 1378
6 TraesCS3D01G540200 chr6D 3345089 3347418 2329 True 645.0 865 84.158000 756 2257 2 chr6D.!!$R3 1501
7 TraesCS3D01G540200 chr6B 6628506 6630725 2219 True 635.0 865 84.002000 770 2257 2 chr6B.!!$R1 1487
8 TraesCS3D01G540200 chr6A 2178000 2180896 2896 True 631.5 815 83.874500 764 2257 2 chr6A.!!$R1 1493

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
45 46 0.037326 GCGTGAGGTGGTGAGATCAA 60.037 55.0 0.0 0.0 0.0 2.57 F
458 468 0.040058 TTGGCCCATCTCATTGCTGT 59.960 50.0 0.0 0.0 0.0 4.40 F
460 470 0.394762 GGCCCATCTCATTGCTGTCA 60.395 55.0 0.0 0.0 0.0 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1719 3608 0.461961 CCCTCGAAGCCCTTGTAGAG 59.538 60.000 0.0 0.0 0.00 2.43 R
1916 3805 0.904649 ACTTCATGAGGATGGCGTCA 59.095 50.000 12.4 0.0 42.43 4.35 R
2238 4127 1.351017 AGATGGGTGGACGTTGTCATT 59.649 47.619 0.0 0.0 33.68 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.963428 CTAGTGGCAACTAACTCACCT 57.037 47.619 1.80 0.00 38.43 4.00
21 22 4.273148 CTAGTGGCAACTAACTCACCTT 57.727 45.455 1.80 0.00 38.43 3.50
22 23 2.851195 AGTGGCAACTAACTCACCTTG 58.149 47.619 0.00 0.00 33.79 3.61
23 24 1.880027 GTGGCAACTAACTCACCTTGG 59.120 52.381 0.00 0.00 37.61 3.61
24 25 1.493022 TGGCAACTAACTCACCTTGGT 59.507 47.619 0.00 0.00 37.61 3.67
25 26 2.706723 TGGCAACTAACTCACCTTGGTA 59.293 45.455 0.00 0.00 37.61 3.25
26 27 3.244422 TGGCAACTAACTCACCTTGGTAG 60.244 47.826 0.00 0.00 37.61 3.18
27 28 2.742589 GCAACTAACTCACCTTGGTAGC 59.257 50.000 0.00 0.00 0.00 3.58
28 29 2.993899 CAACTAACTCACCTTGGTAGCG 59.006 50.000 0.00 0.00 0.00 4.26
29 30 2.245582 ACTAACTCACCTTGGTAGCGT 58.754 47.619 0.00 0.00 0.00 5.07
30 31 2.029290 ACTAACTCACCTTGGTAGCGTG 60.029 50.000 0.00 0.00 0.00 5.34
31 32 1.045407 AACTCACCTTGGTAGCGTGA 58.955 50.000 0.00 1.98 33.45 4.35
32 33 0.603569 ACTCACCTTGGTAGCGTGAG 59.396 55.000 20.17 20.17 45.41 3.51
33 34 0.108615 CTCACCTTGGTAGCGTGAGG 60.109 60.000 16.25 11.98 41.28 3.86
34 35 0.830444 TCACCTTGGTAGCGTGAGGT 60.830 55.000 8.21 8.21 43.06 3.85
35 36 1.671742 ACCTTGGTAGCGTGAGGTG 59.328 57.895 12.05 0.00 44.53 4.00
36 37 1.079127 CCTTGGTAGCGTGAGGTGG 60.079 63.158 1.79 0.00 44.53 4.61
37 38 1.671742 CTTGGTAGCGTGAGGTGGT 59.328 57.895 0.00 0.00 44.53 4.16
38 39 0.670546 CTTGGTAGCGTGAGGTGGTG 60.671 60.000 0.00 0.00 44.53 4.17
39 40 1.116536 TTGGTAGCGTGAGGTGGTGA 61.117 55.000 0.00 0.00 44.53 4.02
40 41 1.215647 GGTAGCGTGAGGTGGTGAG 59.784 63.158 0.00 0.00 44.53 3.51
41 42 1.248785 GGTAGCGTGAGGTGGTGAGA 61.249 60.000 0.00 0.00 44.53 3.27
42 43 0.818296 GTAGCGTGAGGTGGTGAGAT 59.182 55.000 0.00 0.00 44.53 2.75
43 44 1.103803 TAGCGTGAGGTGGTGAGATC 58.896 55.000 0.00 0.00 44.53 2.75
44 45 0.900182 AGCGTGAGGTGGTGAGATCA 60.900 55.000 0.00 0.00 42.35 2.92
45 46 0.037326 GCGTGAGGTGGTGAGATCAA 60.037 55.000 0.00 0.00 0.00 2.57
46 47 1.608025 GCGTGAGGTGGTGAGATCAAA 60.608 52.381 0.00 0.00 0.00 2.69
47 48 2.936993 GCGTGAGGTGGTGAGATCAAAT 60.937 50.000 0.00 0.00 0.00 2.32
48 49 2.932614 CGTGAGGTGGTGAGATCAAATC 59.067 50.000 0.00 0.00 0.00 2.17
49 50 3.617288 CGTGAGGTGGTGAGATCAAATCA 60.617 47.826 0.00 0.00 0.00 2.57
50 51 4.521146 GTGAGGTGGTGAGATCAAATCAT 58.479 43.478 0.00 0.00 0.00 2.45
51 52 4.574013 GTGAGGTGGTGAGATCAAATCATC 59.426 45.833 0.00 0.00 0.00 2.92
52 53 3.801698 AGGTGGTGAGATCAAATCATCG 58.198 45.455 0.00 0.00 29.98 3.84
53 54 2.289002 GGTGGTGAGATCAAATCATCGC 59.711 50.000 0.00 0.00 37.53 4.58
54 55 2.033407 GTGGTGAGATCAAATCATCGCG 60.033 50.000 0.00 0.00 29.43 5.87
55 56 2.159114 TGGTGAGATCAAATCATCGCGA 60.159 45.455 13.09 13.09 29.98 5.87
56 57 2.474359 GGTGAGATCAAATCATCGCGAG 59.526 50.000 16.66 7.11 0.00 5.03
57 58 2.097007 GTGAGATCAAATCATCGCGAGC 60.097 50.000 16.66 0.00 0.00 5.03
58 59 2.223900 TGAGATCAAATCATCGCGAGCT 60.224 45.455 16.66 0.00 0.00 4.09
59 60 2.402305 AGATCAAATCATCGCGAGCTC 58.598 47.619 16.66 2.73 0.00 4.09
60 61 1.458827 GATCAAATCATCGCGAGCTCC 59.541 52.381 16.66 0.00 0.00 4.70
61 62 0.461548 TCAAATCATCGCGAGCTCCT 59.538 50.000 16.66 0.00 0.00 3.69
62 63 0.857935 CAAATCATCGCGAGCTCCTC 59.142 55.000 16.66 0.00 0.00 3.71
63 64 0.461548 AAATCATCGCGAGCTCCTCA 59.538 50.000 16.66 0.00 0.00 3.86
64 65 0.678395 AATCATCGCGAGCTCCTCAT 59.322 50.000 16.66 0.00 0.00 2.90
65 66 0.678395 ATCATCGCGAGCTCCTCATT 59.322 50.000 16.66 0.00 0.00 2.57
66 67 0.461548 TCATCGCGAGCTCCTCATTT 59.538 50.000 16.66 0.00 0.00 2.32
67 68 1.134699 TCATCGCGAGCTCCTCATTTT 60.135 47.619 16.66 0.00 0.00 1.82
68 69 1.260033 CATCGCGAGCTCCTCATTTTC 59.740 52.381 16.66 0.00 0.00 2.29
69 70 0.246360 TCGCGAGCTCCTCATTTTCA 59.754 50.000 3.71 0.00 0.00 2.69
70 71 0.649475 CGCGAGCTCCTCATTTTCAG 59.351 55.000 8.47 0.00 0.00 3.02
71 72 1.012841 GCGAGCTCCTCATTTTCAGG 58.987 55.000 8.47 0.00 0.00 3.86
72 73 1.406069 GCGAGCTCCTCATTTTCAGGA 60.406 52.381 8.47 0.00 37.75 3.86
73 74 2.744494 GCGAGCTCCTCATTTTCAGGAT 60.744 50.000 8.47 0.00 39.44 3.24
74 75 3.539604 CGAGCTCCTCATTTTCAGGATT 58.460 45.455 8.47 0.00 39.44 3.01
75 76 3.944015 CGAGCTCCTCATTTTCAGGATTT 59.056 43.478 8.47 0.00 39.44 2.17
76 77 4.397417 CGAGCTCCTCATTTTCAGGATTTT 59.603 41.667 8.47 0.00 39.44 1.82
77 78 5.105997 CGAGCTCCTCATTTTCAGGATTTTT 60.106 40.000 8.47 0.00 39.44 1.94
78 79 6.278172 AGCTCCTCATTTTCAGGATTTTTC 57.722 37.500 0.00 0.00 39.44 2.29
79 80 6.015282 AGCTCCTCATTTTCAGGATTTTTCT 58.985 36.000 0.00 0.00 39.44 2.52
80 81 6.496218 AGCTCCTCATTTTCAGGATTTTTCTT 59.504 34.615 0.00 0.00 39.44 2.52
81 82 7.671398 AGCTCCTCATTTTCAGGATTTTTCTTA 59.329 33.333 0.00 0.00 39.44 2.10
82 83 7.757173 GCTCCTCATTTTCAGGATTTTTCTTAC 59.243 37.037 0.00 0.00 39.44 2.34
83 84 8.704849 TCCTCATTTTCAGGATTTTTCTTACA 57.295 30.769 0.00 0.00 34.91 2.41
84 85 9.312904 TCCTCATTTTCAGGATTTTTCTTACAT 57.687 29.630 0.00 0.00 34.91 2.29
85 86 9.578439 CCTCATTTTCAGGATTTTTCTTACATC 57.422 33.333 0.00 0.00 31.91 3.06
86 87 9.282247 CTCATTTTCAGGATTTTTCTTACATCG 57.718 33.333 0.00 0.00 0.00 3.84
87 88 7.754924 TCATTTTCAGGATTTTTCTTACATCGC 59.245 33.333 0.00 0.00 0.00 4.58
88 89 4.857871 TCAGGATTTTTCTTACATCGCG 57.142 40.909 0.00 0.00 0.00 5.87
89 90 3.063452 TCAGGATTTTTCTTACATCGCGC 59.937 43.478 0.00 0.00 0.00 6.86
90 91 3.006940 AGGATTTTTCTTACATCGCGCA 58.993 40.909 8.75 0.00 0.00 6.09
91 92 3.627577 AGGATTTTTCTTACATCGCGCAT 59.372 39.130 8.75 0.00 0.00 4.73
92 93 4.096382 AGGATTTTTCTTACATCGCGCATT 59.904 37.500 8.75 0.00 0.00 3.56
93 94 5.295787 AGGATTTTTCTTACATCGCGCATTA 59.704 36.000 8.75 0.00 0.00 1.90
94 95 5.968848 GGATTTTTCTTACATCGCGCATTAA 59.031 36.000 8.75 0.00 0.00 1.40
95 96 6.470877 GGATTTTTCTTACATCGCGCATTAAA 59.529 34.615 8.75 0.00 0.00 1.52
96 97 7.008810 GGATTTTTCTTACATCGCGCATTAAAA 59.991 33.333 8.75 0.00 0.00 1.52
97 98 7.624706 TTTTTCTTACATCGCGCATTAAAAA 57.375 28.000 8.75 5.32 0.00 1.94
117 118 1.331214 AAAGTGGCTCCATGTTGGTG 58.669 50.000 0.00 0.00 39.03 4.17
121 122 2.036256 GCTCCATGTTGGTGGGCT 59.964 61.111 0.00 0.00 39.03 5.19
124 125 2.141011 CTCCATGTTGGTGGGCTGGA 62.141 60.000 0.00 0.00 39.03 3.86
135 136 1.452108 GGGCTGGACCAGTATGTGC 60.452 63.158 22.58 7.96 42.05 4.57
136 137 1.452108 GGCTGGACCAGTATGTGCC 60.452 63.158 22.58 13.50 38.86 5.01
141 142 1.521681 GACCAGTATGTGCCGAGCC 60.522 63.158 0.00 0.00 0.00 4.70
147 148 2.953488 TATGTGCCGAGCCTGTGCA 61.953 57.895 0.00 0.00 41.13 4.57
150 151 4.019312 TGCCGAGCCTGTGCATCA 62.019 61.111 0.00 0.00 41.13 3.07
152 153 3.190849 CCGAGCCTGTGCATCACG 61.191 66.667 0.00 0.00 41.13 4.35
191 192 1.904287 TCCCTGGACGGACAAAAATG 58.096 50.000 0.00 0.00 33.16 2.32
198 199 2.882137 GGACGGACAAAAATGTGGAGAA 59.118 45.455 0.00 0.00 0.00 2.87
203 204 5.105752 CGGACAAAAATGTGGAGAAACAAA 58.894 37.500 0.00 0.00 32.81 2.83
223 224 8.433421 AACAAATTAGTACCATCTTGTATCGG 57.567 34.615 0.00 0.00 0.00 4.18
224 225 7.788026 ACAAATTAGTACCATCTTGTATCGGA 58.212 34.615 0.00 0.00 0.00 4.55
228 236 8.658499 ATTAGTACCATCTTGTATCGGAAAAC 57.342 34.615 0.00 0.00 0.00 2.43
229 237 6.045072 AGTACCATCTTGTATCGGAAAACA 57.955 37.500 0.00 0.00 0.00 2.83
232 240 6.642707 ACCATCTTGTATCGGAAAACAAAA 57.357 33.333 9.62 0.00 35.32 2.44
322 332 1.460689 ACCTTGTTCTCCGGTCCCA 60.461 57.895 0.00 0.00 0.00 4.37
341 351 5.465724 GTCCCAGACGATATTTATTGTGTCC 59.534 44.000 0.00 0.00 30.59 4.02
350 360 9.530633 ACGATATTTATTGTGTCCTTCTCTAAC 57.469 33.333 0.00 0.00 0.00 2.34
351 361 8.979574 CGATATTTATTGTGTCCTTCTCTAACC 58.020 37.037 0.00 0.00 0.00 2.85
433 443 4.796038 AACTTGAGCCCATGAAATTGAG 57.204 40.909 0.00 0.00 0.00 3.02
456 466 1.760613 CATTTGGCCCATCTCATTGCT 59.239 47.619 0.00 0.00 0.00 3.91
457 467 1.187974 TTTGGCCCATCTCATTGCTG 58.812 50.000 0.00 0.00 0.00 4.41
458 468 0.040058 TTGGCCCATCTCATTGCTGT 59.960 50.000 0.00 0.00 0.00 4.40
460 470 0.394762 GGCCCATCTCATTGCTGTCA 60.395 55.000 0.00 0.00 0.00 3.58
461 471 1.466856 GCCCATCTCATTGCTGTCAA 58.533 50.000 0.00 0.00 36.51 3.18
482 495 6.795114 GTCAACGTCGTCAAAATGAATGTATT 59.205 34.615 0.00 0.00 0.00 1.89
488 501 8.166066 CGTCGTCAAAATGAATGTATTTAGACA 58.834 33.333 0.00 0.00 30.47 3.41
520 533 6.067862 GTACTAGATACATCCGTTTGAGCGG 61.068 48.000 0.00 0.00 42.14 5.52
571 584 7.989170 ACAAGATTATTCTGTCTGCACATATGA 59.011 33.333 10.38 0.00 30.72 2.15
641 655 7.604927 TGGAAGTACAAGTATTTACCACATGTC 59.395 37.037 0.00 0.00 0.00 3.06
677 691 9.622004 CACTTTATCTTATGCAATGATTCATCC 57.378 33.333 0.00 0.00 0.00 3.51
718 732 8.693625 GGATGTTATGTTTCTAGTACACCTACT 58.306 37.037 0.00 0.00 37.04 2.57
733 747 7.817962 AGTACACCTACTCACAACATTATGAAC 59.182 37.037 0.00 0.00 0.00 3.18
895 919 3.490348 CCAGAAAGCCCCATATAACCAG 58.510 50.000 0.00 0.00 0.00 4.00
964 1001 1.300388 ACACTCAACGCACGTACCC 60.300 57.895 0.00 0.00 0.00 3.69
992 1029 2.038007 TCCGGAGAGGCAGAAGCT 59.962 61.111 0.00 0.00 41.70 3.74
1119 1170 1.379309 GCTGGGACTCCTCGAGACT 60.379 63.158 15.71 0.00 33.32 3.24
1126 1177 2.639065 GACTCCTCGAGACTCTGATGT 58.361 52.381 15.71 2.65 33.32 3.06
1288 1339 3.881019 AAGGACGGCCGTCTCTCCA 62.881 63.158 46.25 0.00 44.04 3.86
1296 1347 3.843304 CGTCTCTCCAGGCGGTAT 58.157 61.111 0.00 0.00 44.47 2.73
1299 1350 1.043673 GTCTCTCCAGGCGGTATGGT 61.044 60.000 0.00 0.00 39.01 3.55
1302 1353 2.687200 TCCAGGCGGTATGGTGCT 60.687 61.111 0.00 0.00 39.01 4.40
1347 1398 4.099170 AACGAGGACGGCGTCTCG 62.099 66.667 36.35 36.35 41.75 4.04
1353 1404 2.483745 GACGGCGTCTCGATGTCA 59.516 61.111 31.15 0.00 34.44 3.58
1455 1517 2.584835 TTGCCCATTTGCTCAGTACT 57.415 45.000 0.00 0.00 0.00 2.73
1456 1518 2.113860 TGCCCATTTGCTCAGTACTC 57.886 50.000 0.00 0.00 0.00 2.59
1457 1519 1.630369 TGCCCATTTGCTCAGTACTCT 59.370 47.619 0.00 0.00 0.00 3.24
1459 1521 3.084786 GCCCATTTGCTCAGTACTCTTT 58.915 45.455 0.00 0.00 0.00 2.52
1460 1522 3.119708 GCCCATTTGCTCAGTACTCTTTG 60.120 47.826 0.00 0.00 0.00 2.77
1461 1523 4.074970 CCCATTTGCTCAGTACTCTTTGT 58.925 43.478 0.00 0.00 0.00 2.83
1462 1524 4.520492 CCCATTTGCTCAGTACTCTTTGTT 59.480 41.667 0.00 0.00 0.00 2.83
1463 1525 5.335191 CCCATTTGCTCAGTACTCTTTGTTC 60.335 44.000 0.00 0.00 0.00 3.18
1464 1526 5.239306 CCATTTGCTCAGTACTCTTTGTTCA 59.761 40.000 0.00 0.00 0.00 3.18
1465 1527 5.991328 TTTGCTCAGTACTCTTTGTTCAG 57.009 39.130 0.00 0.00 0.00 3.02
1466 1528 4.937201 TGCTCAGTACTCTTTGTTCAGA 57.063 40.909 0.00 0.00 0.00 3.27
1610 3499 0.896923 GCATCCCATTCAACAAGGCA 59.103 50.000 0.00 0.00 0.00 4.75
1719 3608 1.000955 TCACCAAGAAGCTCCTCGAAC 59.999 52.381 0.00 0.00 0.00 3.95
1916 3805 3.322466 CAGAAGGTGCCCTCGGGT 61.322 66.667 3.54 0.00 37.65 5.28
2204 4093 3.451178 AGACCACTTACATCTACGCCAAT 59.549 43.478 0.00 0.00 0.00 3.16
2237 4126 6.860539 CCATCGAGTTCACTAAGTAGATGATG 59.139 42.308 14.05 5.37 44.55 3.07
2238 4127 7.255277 CCATCGAGTTCACTAAGTAGATGATGA 60.255 40.741 14.05 0.00 44.55 2.92
2349 4248 4.336532 AATTCTAATGTTTGCGTCGTCC 57.663 40.909 0.00 0.00 0.00 4.79
2353 4252 2.611974 AATGTTTGCGTCGTCCATTC 57.388 45.000 0.00 0.00 0.00 2.67
2412 4346 8.851145 TGCTCTTAATGGTTGTGTGTATTAAAA 58.149 29.630 0.00 0.00 0.00 1.52
2419 4353 6.071984 TGGTTGTGTGTATTAAAATCCACCT 58.928 36.000 0.00 0.00 0.00 4.00
2512 4698 5.560722 TCTTAACAAGGATGTCAAGTGGA 57.439 39.130 0.00 0.00 39.40 4.02
2544 4730 9.423061 ACAATCAAGTAATTTTAACATGCTTCC 57.577 29.630 0.00 0.00 0.00 3.46
2545 4731 9.643693 CAATCAAGTAATTTTAACATGCTTCCT 57.356 29.630 0.00 0.00 0.00 3.36
2551 4737 9.923143 AGTAATTTTAACATGCTTCCTTTTACC 57.077 29.630 0.00 0.00 0.00 2.85
2554 4740 6.584185 TTTAACATGCTTCCTTTTACCTCC 57.416 37.500 0.00 0.00 0.00 4.30
2556 4742 3.956744 ACATGCTTCCTTTTACCTCCTC 58.043 45.455 0.00 0.00 0.00 3.71
2557 4743 3.589288 ACATGCTTCCTTTTACCTCCTCT 59.411 43.478 0.00 0.00 0.00 3.69
2558 4744 4.043435 ACATGCTTCCTTTTACCTCCTCTT 59.957 41.667 0.00 0.00 0.00 2.85
2563 4749 5.048643 GCTTCCTTTTACCTCCTCTTTTCAC 60.049 44.000 0.00 0.00 0.00 3.18
2564 4750 5.640158 TCCTTTTACCTCCTCTTTTCACA 57.360 39.130 0.00 0.00 0.00 3.58
2565 4751 5.374071 TCCTTTTACCTCCTCTTTTCACAC 58.626 41.667 0.00 0.00 0.00 3.82
2566 4752 4.213482 CCTTTTACCTCCTCTTTTCACACG 59.787 45.833 0.00 0.00 0.00 4.49
2567 4753 4.675976 TTTACCTCCTCTTTTCACACGA 57.324 40.909 0.00 0.00 0.00 4.35
2568 4754 2.821991 ACCTCCTCTTTTCACACGAG 57.178 50.000 0.00 0.00 0.00 4.18
2569 4755 2.317040 ACCTCCTCTTTTCACACGAGA 58.683 47.619 0.00 0.00 0.00 4.04
2570 4756 2.297597 ACCTCCTCTTTTCACACGAGAG 59.702 50.000 0.00 0.00 37.30 3.20
2576 4762 5.122512 CTCTTTTCACACGAGAGGTAAGA 57.877 43.478 0.00 0.00 34.63 2.10
2577 4763 5.524971 TCTTTTCACACGAGAGGTAAGAA 57.475 39.130 0.00 0.00 0.00 2.52
2578 4764 5.529791 TCTTTTCACACGAGAGGTAAGAAG 58.470 41.667 0.00 0.00 0.00 2.85
2579 4765 3.936372 TTCACACGAGAGGTAAGAAGG 57.064 47.619 0.00 0.00 0.00 3.46
2580 4766 2.872732 TCACACGAGAGGTAAGAAGGT 58.127 47.619 0.00 0.00 0.00 3.50
2581 4767 4.025040 TCACACGAGAGGTAAGAAGGTA 57.975 45.455 0.00 0.00 0.00 3.08
2583 4769 4.458295 TCACACGAGAGGTAAGAAGGTAAG 59.542 45.833 0.00 0.00 0.00 2.34
2586 4772 5.715753 ACACGAGAGGTAAGAAGGTAAGAAT 59.284 40.000 0.00 0.00 0.00 2.40
2589 4775 8.248945 CACGAGAGGTAAGAAGGTAAGAATTAA 58.751 37.037 0.00 0.00 28.70 1.40
2591 4777 9.819267 CGAGAGGTAAGAAGGTAAGAATTAATT 57.181 33.333 0.00 0.00 28.70 1.40
2619 4805 9.916397 GACCACTAGTTAATAAAATCAATGACG 57.084 33.333 0.00 0.00 0.00 4.35
2620 4806 8.395633 ACCACTAGTTAATAAAATCAATGACGC 58.604 33.333 0.00 0.00 0.00 5.19
2621 4807 8.394877 CCACTAGTTAATAAAATCAATGACGCA 58.605 33.333 0.00 0.00 0.00 5.24
2622 4808 9.425893 CACTAGTTAATAAAATCAATGACGCAG 57.574 33.333 0.00 0.00 0.00 5.18
2623 4809 9.378551 ACTAGTTAATAAAATCAATGACGCAGA 57.621 29.630 0.00 0.00 0.00 4.26
2626 4812 9.113838 AGTTAATAAAATCAATGACGCAGATCT 57.886 29.630 0.00 0.00 0.00 2.75
2633 4819 8.613060 AAATCAATGACGCAGATCTATTATGT 57.387 30.769 0.00 0.00 0.00 2.29
2634 4820 9.710900 AAATCAATGACGCAGATCTATTATGTA 57.289 29.630 0.00 0.00 0.00 2.29
2635 4821 8.694975 ATCAATGACGCAGATCTATTATGTAC 57.305 34.615 0.00 0.00 0.00 2.90
2636 4822 7.886338 TCAATGACGCAGATCTATTATGTACT 58.114 34.615 0.00 0.00 0.00 2.73
2637 4823 8.023706 TCAATGACGCAGATCTATTATGTACTC 58.976 37.037 0.00 0.00 0.00 2.59
2638 4824 7.695480 ATGACGCAGATCTATTATGTACTCT 57.305 36.000 0.00 0.00 0.00 3.24
2639 4825 7.511959 TGACGCAGATCTATTATGTACTCTT 57.488 36.000 0.00 0.00 0.00 2.85
2640 4826 8.617290 TGACGCAGATCTATTATGTACTCTTA 57.383 34.615 0.00 0.00 0.00 2.10
2641 4827 9.232473 TGACGCAGATCTATTATGTACTCTTAT 57.768 33.333 0.00 0.00 0.00 1.73
2642 4828 9.710979 GACGCAGATCTATTATGTACTCTTATC 57.289 37.037 0.00 0.00 0.00 1.75
2643 4829 9.456147 ACGCAGATCTATTATGTACTCTTATCT 57.544 33.333 0.00 0.00 0.00 1.98
2644 4830 9.929722 CGCAGATCTATTATGTACTCTTATCTC 57.070 37.037 0.00 0.00 0.00 2.75
2656 4842 9.814899 ATGTACTCTTATCTCTCATGTGAAAAG 57.185 33.333 0.00 4.01 0.00 2.27
2657 4843 8.253810 TGTACTCTTATCTCTCATGTGAAAAGG 58.746 37.037 0.00 1.93 0.00 3.11
2658 4844 6.648192 ACTCTTATCTCTCATGTGAAAAGGG 58.352 40.000 10.34 10.34 0.00 3.95
2659 4845 5.994250 TCTTATCTCTCATGTGAAAAGGGG 58.006 41.667 0.00 0.00 0.00 4.79
2660 4846 5.726308 TCTTATCTCTCATGTGAAAAGGGGA 59.274 40.000 0.00 0.00 0.00 4.81
2661 4847 3.988976 TCTCTCATGTGAAAAGGGGAG 57.011 47.619 0.00 0.00 0.00 4.30
2662 4848 2.573462 TCTCTCATGTGAAAAGGGGAGG 59.427 50.000 0.00 0.00 0.00 4.30
2663 4849 2.307098 CTCTCATGTGAAAAGGGGAGGT 59.693 50.000 0.00 0.00 0.00 3.85
2664 4850 3.519510 CTCTCATGTGAAAAGGGGAGGTA 59.480 47.826 0.00 0.00 0.00 3.08
2665 4851 3.913799 TCTCATGTGAAAAGGGGAGGTAA 59.086 43.478 0.00 0.00 0.00 2.85
2666 4852 4.019321 TCTCATGTGAAAAGGGGAGGTAAG 60.019 45.833 0.00 0.00 0.00 2.34
2667 4853 3.913799 TCATGTGAAAAGGGGAGGTAAGA 59.086 43.478 0.00 0.00 0.00 2.10
2668 4854 4.019321 TCATGTGAAAAGGGGAGGTAAGAG 60.019 45.833 0.00 0.00 0.00 2.85
2669 4855 2.642807 TGTGAAAAGGGGAGGTAAGAGG 59.357 50.000 0.00 0.00 0.00 3.69
2670 4856 2.026169 GTGAAAAGGGGAGGTAAGAGGG 60.026 54.545 0.00 0.00 0.00 4.30
2671 4857 2.157911 TGAAAAGGGGAGGTAAGAGGGA 60.158 50.000 0.00 0.00 0.00 4.20
2672 4858 1.968278 AAAGGGGAGGTAAGAGGGAC 58.032 55.000 0.00 0.00 0.00 4.46
2673 4859 0.044397 AAGGGGAGGTAAGAGGGACC 59.956 60.000 0.00 0.00 37.22 4.46
2674 4860 1.160289 AGGGGAGGTAAGAGGGACCA 61.160 60.000 0.00 0.00 39.65 4.02
2675 4861 0.029989 GGGGAGGTAAGAGGGACCAT 60.030 60.000 0.00 0.00 39.65 3.55
2676 4862 1.132500 GGGAGGTAAGAGGGACCATG 58.868 60.000 0.00 0.00 39.65 3.66
2677 4863 0.470341 GGAGGTAAGAGGGACCATGC 59.530 60.000 0.00 0.00 39.65 4.06
2678 4864 1.501582 GAGGTAAGAGGGACCATGCT 58.498 55.000 0.00 0.00 39.65 3.79
2679 4865 2.679082 GAGGTAAGAGGGACCATGCTA 58.321 52.381 0.00 0.00 39.65 3.49
2680 4866 3.039011 GAGGTAAGAGGGACCATGCTAA 58.961 50.000 0.00 0.00 39.65 3.09
2681 4867 3.454812 GAGGTAAGAGGGACCATGCTAAA 59.545 47.826 0.00 0.00 39.65 1.85
2682 4868 3.850173 AGGTAAGAGGGACCATGCTAAAA 59.150 43.478 0.00 0.00 39.65 1.52
2683 4869 4.478686 AGGTAAGAGGGACCATGCTAAAAT 59.521 41.667 0.00 0.00 39.65 1.82
2684 4870 5.044105 AGGTAAGAGGGACCATGCTAAAATT 60.044 40.000 0.00 0.00 39.65 1.82
2685 4871 5.656859 GGTAAGAGGGACCATGCTAAAATTT 59.343 40.000 0.00 0.00 36.91 1.82
2686 4872 5.665916 AAGAGGGACCATGCTAAAATTTG 57.334 39.130 0.00 0.00 0.00 2.32
2687 4873 3.448660 AGAGGGACCATGCTAAAATTTGC 59.551 43.478 0.00 0.00 0.00 3.68
2688 4874 2.501316 AGGGACCATGCTAAAATTTGCC 59.499 45.455 0.00 0.00 0.00 4.52
2689 4875 2.419990 GGGACCATGCTAAAATTTGCCC 60.420 50.000 0.00 0.00 0.00 5.36
2695 4881 5.127491 CCATGCTAAAATTTGCCCAATCAT 58.873 37.500 0.00 0.00 0.00 2.45
2708 4894 7.759489 TTGCCCAATCATATATAACAAGTCC 57.241 36.000 0.00 0.00 0.00 3.85
2713 4899 9.113838 CCCAATCATATATAACAAGTCCTATGC 57.886 37.037 0.00 0.00 0.00 3.14
2766 4954 7.761409 TCTAAATTTTCATCAACCAATCCTCG 58.239 34.615 0.00 0.00 0.00 4.63
2769 4957 2.028420 TCATCAACCAATCCTCGCAG 57.972 50.000 0.00 0.00 0.00 5.18
2775 4963 1.237285 ACCAATCCTCGCAGCAACAC 61.237 55.000 0.00 0.00 0.00 3.32
2777 4965 2.680913 AATCCTCGCAGCAACACGC 61.681 57.895 0.00 0.00 42.91 5.34
2786 4974 2.435234 GCAACACGCGGGGTATCA 60.435 61.111 15.46 0.00 0.00 2.15
2791 4979 3.250744 CAACACGCGGGGTATCATATAG 58.749 50.000 15.46 0.00 0.00 1.31
2798 5257 5.163581 ACGCGGGGTATCATATAGTTATGAC 60.164 44.000 12.47 0.00 45.29 3.06
2801 5260 6.534079 GCGGGGTATCATATAGTTATGACAAC 59.466 42.308 0.00 1.29 45.29 3.32
2827 5286 6.564709 TGACATGATTTCACTCCTTTCTTG 57.435 37.500 0.00 0.00 0.00 3.02
2835 5294 8.816894 TGATTTCACTCCTTTCTTGAGTATACT 58.183 33.333 4.68 4.68 41.02 2.12
2836 5295 9.660180 GATTTCACTCCTTTCTTGAGTATACTT 57.340 33.333 6.88 0.00 41.02 2.24
2873 5332 8.950210 AGGATACAATGAAGTGAAGTGTTATTG 58.050 33.333 0.00 0.00 41.41 1.90
2911 5375 5.712004 TGTCCATGAATGTGTTATTGCTTG 58.288 37.500 0.00 0.00 0.00 4.01
2971 5435 2.436109 GGAGGCACCCAAGCTTCA 59.564 61.111 0.00 0.00 41.86 3.02
3021 5485 6.702329 ACGAAAGAACTCCTACATTCAAGAT 58.298 36.000 0.00 0.00 0.00 2.40
3022 5486 7.837863 ACGAAAGAACTCCTACATTCAAGATA 58.162 34.615 0.00 0.00 0.00 1.98
3032 5496 3.786635 ACATTCAAGATAGAGCACCGAC 58.213 45.455 0.00 0.00 0.00 4.79
3033 5497 3.449018 ACATTCAAGATAGAGCACCGACT 59.551 43.478 0.00 0.00 0.00 4.18
3034 5498 4.081420 ACATTCAAGATAGAGCACCGACTT 60.081 41.667 0.00 0.00 0.00 3.01
3035 5499 5.127194 ACATTCAAGATAGAGCACCGACTTA 59.873 40.000 0.00 0.00 0.00 2.24
3036 5500 4.634184 TCAAGATAGAGCACCGACTTAC 57.366 45.455 0.00 0.00 0.00 2.34
3037 5501 3.380637 TCAAGATAGAGCACCGACTTACC 59.619 47.826 0.00 0.00 0.00 2.85
3038 5502 3.014304 AGATAGAGCACCGACTTACCA 57.986 47.619 0.00 0.00 0.00 3.25
3039 5503 3.567397 AGATAGAGCACCGACTTACCAT 58.433 45.455 0.00 0.00 0.00 3.55
3040 5504 3.961408 AGATAGAGCACCGACTTACCATT 59.039 43.478 0.00 0.00 0.00 3.16
3041 5505 2.674796 AGAGCACCGACTTACCATTC 57.325 50.000 0.00 0.00 0.00 2.67
3069 5533 8.689972 GGATTTCATTATCAGAAACACTGGATT 58.310 33.333 0.00 0.00 45.76 3.01
3111 5575 3.307906 CCACCAGACCGACCGGAA 61.308 66.667 16.07 0.00 38.96 4.30
3116 5580 1.324740 CCAGACCGACCGGAATACCA 61.325 60.000 16.07 0.00 38.96 3.25
3117 5581 0.179119 CAGACCGACCGGAATACCAC 60.179 60.000 16.07 0.00 38.96 4.16
3139 5603 4.202161 ACGTGAATCTGACCATCCATCTAC 60.202 45.833 0.00 0.00 0.00 2.59
3145 5609 3.116590 TCTGACCATCCATCTACAGGGAT 60.117 47.826 0.00 0.00 44.65 3.85
3154 5618 4.960469 TCCATCTACAGGGATAACGACTTT 59.040 41.667 0.00 0.00 0.00 2.66
3175 5639 8.429237 ACTTTTGTCCATCCAAATAAATGGTA 57.571 30.769 1.62 0.00 42.57 3.25
3212 5676 2.185004 AGTGGGTATGTCACAGTTGC 57.815 50.000 0.00 0.00 37.58 4.17
3225 5689 1.610522 ACAGTTGCGTAGAACCTACGT 59.389 47.619 22.30 0.00 42.35 3.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.880027 CCAAGGTGAGTTAGTTGCCAC 59.120 52.381 0.00 0.00 0.00 5.01
4 5 1.493022 ACCAAGGTGAGTTAGTTGCCA 59.507 47.619 0.00 0.00 0.00 4.92
6 7 2.742589 GCTACCAAGGTGAGTTAGTTGC 59.257 50.000 1.07 0.00 0.00 4.17
7 8 2.993899 CGCTACCAAGGTGAGTTAGTTG 59.006 50.000 1.07 0.00 0.00 3.16
8 9 2.631545 ACGCTACCAAGGTGAGTTAGTT 59.368 45.455 1.07 0.00 0.00 2.24
9 10 2.029290 CACGCTACCAAGGTGAGTTAGT 60.029 50.000 1.07 0.00 33.58 2.24
10 11 2.230508 TCACGCTACCAAGGTGAGTTAG 59.769 50.000 1.07 0.00 35.89 2.34
11 12 2.241160 TCACGCTACCAAGGTGAGTTA 58.759 47.619 1.07 0.00 35.89 2.24
12 13 1.045407 TCACGCTACCAAGGTGAGTT 58.955 50.000 1.07 0.00 35.89 3.01
13 14 2.741433 TCACGCTACCAAGGTGAGT 58.259 52.632 1.07 0.00 35.89 3.41
15 16 0.830444 ACCTCACGCTACCAAGGTGA 60.830 55.000 1.07 0.00 40.59 4.02
16 17 1.671742 ACCTCACGCTACCAAGGTG 59.328 57.895 1.07 0.00 40.59 4.00
17 18 1.671742 CACCTCACGCTACCAAGGT 59.328 57.895 0.00 0.00 42.87 3.50
18 19 1.079127 CCACCTCACGCTACCAAGG 60.079 63.158 0.00 0.00 34.94 3.61
19 20 0.670546 CACCACCTCACGCTACCAAG 60.671 60.000 0.00 0.00 0.00 3.61
20 21 1.116536 TCACCACCTCACGCTACCAA 61.117 55.000 0.00 0.00 0.00 3.67
21 22 1.532078 TCACCACCTCACGCTACCA 60.532 57.895 0.00 0.00 0.00 3.25
22 23 1.215647 CTCACCACCTCACGCTACC 59.784 63.158 0.00 0.00 0.00 3.18
23 24 0.818296 ATCTCACCACCTCACGCTAC 59.182 55.000 0.00 0.00 0.00 3.58
24 25 1.103803 GATCTCACCACCTCACGCTA 58.896 55.000 0.00 0.00 0.00 4.26
25 26 0.900182 TGATCTCACCACCTCACGCT 60.900 55.000 0.00 0.00 0.00 5.07
26 27 0.037326 TTGATCTCACCACCTCACGC 60.037 55.000 0.00 0.00 0.00 5.34
27 28 2.455674 TTTGATCTCACCACCTCACG 57.544 50.000 0.00 0.00 0.00 4.35
28 29 3.942829 TGATTTGATCTCACCACCTCAC 58.057 45.455 0.00 0.00 0.00 3.51
29 30 4.681512 CGATGATTTGATCTCACCACCTCA 60.682 45.833 0.00 0.00 0.00 3.86
30 31 3.806521 CGATGATTTGATCTCACCACCTC 59.193 47.826 0.00 0.00 0.00 3.85
31 32 3.801698 CGATGATTTGATCTCACCACCT 58.198 45.455 0.00 0.00 0.00 4.00
32 33 2.289002 GCGATGATTTGATCTCACCACC 59.711 50.000 0.00 0.00 0.00 4.61
33 34 2.033407 CGCGATGATTTGATCTCACCAC 60.033 50.000 0.00 0.00 0.00 4.16
34 35 2.159114 TCGCGATGATTTGATCTCACCA 60.159 45.455 3.71 0.00 0.00 4.17
35 36 2.473816 TCGCGATGATTTGATCTCACC 58.526 47.619 3.71 0.00 0.00 4.02
36 37 2.097007 GCTCGCGATGATTTGATCTCAC 60.097 50.000 10.36 0.00 0.00 3.51
37 38 2.130395 GCTCGCGATGATTTGATCTCA 58.870 47.619 10.36 0.00 0.00 3.27
38 39 2.402305 AGCTCGCGATGATTTGATCTC 58.598 47.619 10.36 0.00 0.00 2.75
39 40 2.402305 GAGCTCGCGATGATTTGATCT 58.598 47.619 10.36 0.00 0.00 2.75
40 41 1.458827 GGAGCTCGCGATGATTTGATC 59.541 52.381 10.36 4.67 0.00 2.92
41 42 1.069823 AGGAGCTCGCGATGATTTGAT 59.930 47.619 10.36 0.00 0.00 2.57
42 43 0.461548 AGGAGCTCGCGATGATTTGA 59.538 50.000 10.36 0.00 0.00 2.69
43 44 0.857935 GAGGAGCTCGCGATGATTTG 59.142 55.000 10.36 0.00 0.00 2.32
44 45 0.461548 TGAGGAGCTCGCGATGATTT 59.538 50.000 10.36 0.00 32.35 2.17
45 46 0.678395 ATGAGGAGCTCGCGATGATT 59.322 50.000 10.36 0.00 32.35 2.57
46 47 0.678395 AATGAGGAGCTCGCGATGAT 59.322 50.000 10.36 1.96 32.35 2.45
47 48 0.461548 AAATGAGGAGCTCGCGATGA 59.538 50.000 10.36 0.00 32.35 2.92
48 49 1.260033 GAAAATGAGGAGCTCGCGATG 59.740 52.381 10.36 5.11 32.35 3.84
49 50 1.134699 TGAAAATGAGGAGCTCGCGAT 60.135 47.619 10.36 0.00 32.35 4.58
50 51 0.246360 TGAAAATGAGGAGCTCGCGA 59.754 50.000 9.26 9.26 32.35 5.87
51 52 0.649475 CTGAAAATGAGGAGCTCGCG 59.351 55.000 7.83 0.00 32.35 5.87
52 53 1.012841 CCTGAAAATGAGGAGCTCGC 58.987 55.000 7.83 2.75 32.35 5.03
53 54 2.680312 TCCTGAAAATGAGGAGCTCG 57.320 50.000 7.83 0.00 34.49 5.03
54 55 5.911378 AAAATCCTGAAAATGAGGAGCTC 57.089 39.130 4.71 4.71 43.02 4.09
55 56 6.015282 AGAAAAATCCTGAAAATGAGGAGCT 58.985 36.000 0.00 0.00 43.02 4.09
56 57 6.278172 AGAAAAATCCTGAAAATGAGGAGC 57.722 37.500 0.00 0.00 43.02 4.70
57 58 8.796475 TGTAAGAAAAATCCTGAAAATGAGGAG 58.204 33.333 0.00 0.00 43.02 3.69
58 59 8.704849 TGTAAGAAAAATCCTGAAAATGAGGA 57.295 30.769 0.00 0.00 43.92 3.71
59 60 9.578439 GATGTAAGAAAAATCCTGAAAATGAGG 57.422 33.333 0.00 0.00 0.00 3.86
60 61 9.282247 CGATGTAAGAAAAATCCTGAAAATGAG 57.718 33.333 0.00 0.00 0.00 2.90
61 62 7.754924 GCGATGTAAGAAAAATCCTGAAAATGA 59.245 33.333 0.00 0.00 0.00 2.57
62 63 7.253420 CGCGATGTAAGAAAAATCCTGAAAATG 60.253 37.037 0.00 0.00 0.00 2.32
63 64 6.747280 CGCGATGTAAGAAAAATCCTGAAAAT 59.253 34.615 0.00 0.00 0.00 1.82
64 65 6.083630 CGCGATGTAAGAAAAATCCTGAAAA 58.916 36.000 0.00 0.00 0.00 2.29
65 66 5.627172 CGCGATGTAAGAAAAATCCTGAAA 58.373 37.500 0.00 0.00 0.00 2.69
66 67 4.436852 GCGCGATGTAAGAAAAATCCTGAA 60.437 41.667 12.10 0.00 0.00 3.02
67 68 3.063452 GCGCGATGTAAGAAAAATCCTGA 59.937 43.478 12.10 0.00 0.00 3.86
68 69 3.181511 TGCGCGATGTAAGAAAAATCCTG 60.182 43.478 12.10 0.00 0.00 3.86
69 70 3.006940 TGCGCGATGTAAGAAAAATCCT 58.993 40.909 12.10 0.00 0.00 3.24
70 71 3.398954 TGCGCGATGTAAGAAAAATCC 57.601 42.857 12.10 0.00 0.00 3.01
71 72 7.431215 TTTAATGCGCGATGTAAGAAAAATC 57.569 32.000 12.10 0.00 0.00 2.17
72 73 7.804614 TTTTAATGCGCGATGTAAGAAAAAT 57.195 28.000 12.10 0.00 0.00 1.82
73 74 7.624706 TTTTTAATGCGCGATGTAAGAAAAA 57.375 28.000 12.10 9.50 0.00 1.94
96 97 2.102925 CACCAACATGGAGCCACTTTTT 59.897 45.455 2.85 0.00 40.96 1.94
97 98 1.688197 CACCAACATGGAGCCACTTTT 59.312 47.619 2.85 0.00 40.96 2.27
98 99 1.331214 CACCAACATGGAGCCACTTT 58.669 50.000 2.85 0.00 40.96 2.66
99 100 0.540365 CCACCAACATGGAGCCACTT 60.540 55.000 2.85 0.00 43.02 3.16
100 101 1.075482 CCACCAACATGGAGCCACT 59.925 57.895 2.85 0.00 43.02 4.00
101 102 1.978617 CCCACCAACATGGAGCCAC 60.979 63.158 2.85 0.00 43.02 5.01
102 103 2.440147 CCCACCAACATGGAGCCA 59.560 61.111 2.85 0.00 43.02 4.75
103 104 3.070576 GCCCACCAACATGGAGCC 61.071 66.667 2.85 0.00 43.02 4.70
104 105 2.036256 AGCCCACCAACATGGAGC 59.964 61.111 2.85 3.37 43.02 4.70
105 106 1.679977 CCAGCCCACCAACATGGAG 60.680 63.158 2.85 0.00 43.02 3.86
106 107 2.159490 TCCAGCCCACCAACATGGA 61.159 57.895 2.85 0.00 43.02 3.41
107 108 1.978617 GTCCAGCCCACCAACATGG 60.979 63.158 0.00 0.00 45.02 3.66
108 109 1.978617 GGTCCAGCCCACCAACATG 60.979 63.158 0.00 0.00 33.63 3.21
109 110 2.430704 CTGGTCCAGCCCACCAACAT 62.431 60.000 5.79 0.00 43.56 2.71
110 111 3.099841 TGGTCCAGCCCACCAACA 61.100 61.111 0.00 0.00 41.17 3.33
111 112 1.774894 TACTGGTCCAGCCCACCAAC 61.775 60.000 19.40 0.00 43.56 3.77
117 118 1.452108 GCACATACTGGTCCAGCCC 60.452 63.158 19.40 0.00 34.37 5.19
121 122 1.897423 CTCGGCACATACTGGTCCA 59.103 57.895 0.00 0.00 0.00 4.02
124 125 1.990060 AGGCTCGGCACATACTGGT 60.990 57.895 0.00 0.00 0.00 4.00
135 136 2.913054 ATCGTGATGCACAGGCTCGG 62.913 60.000 0.00 0.00 41.91 4.63
136 137 1.485838 GATCGTGATGCACAGGCTCG 61.486 60.000 0.00 0.00 41.91 5.03
141 142 1.634753 CGCTGATCGTGATGCACAG 59.365 57.895 0.00 0.00 33.40 3.66
152 153 3.129638 GGACCTCCTATATGACGCTGATC 59.870 52.174 0.00 0.00 0.00 2.92
159 160 3.166679 GTCCAGGGACCTCCTATATGAC 58.833 54.545 7.24 0.00 46.12 3.06
191 192 7.923414 AGATGGTACTAATTTGTTTCTCCAC 57.077 36.000 0.00 0.00 0.00 4.02
198 199 8.262227 TCCGATACAAGATGGTACTAATTTGTT 58.738 33.333 14.01 5.76 31.84 2.83
203 204 8.262227 TGTTTTCCGATACAAGATGGTACTAAT 58.738 33.333 0.00 0.00 0.00 1.73
254 262 6.242508 GAAAGGTCTGCGTTTCTCTTATTT 57.757 37.500 5.78 0.00 42.73 1.40
322 332 8.012957 AGAGAAGGACACAATAAATATCGTCT 57.987 34.615 0.00 0.00 0.00 4.18
341 351 9.528018 GATCTTCATACTTTCTGGTTAGAGAAG 57.472 37.037 0.00 0.00 33.50 2.85
350 360 7.413438 CGAAGTTTGGATCTTCATACTTTCTGG 60.413 40.741 8.44 0.00 38.42 3.86
351 361 7.118390 ACGAAGTTTGGATCTTCATACTTTCTG 59.882 37.037 8.44 5.89 37.78 3.02
456 466 4.034626 ACATTCATTTTGACGACGTTGACA 59.965 37.500 10.51 6.86 0.00 3.58
457 467 4.523813 ACATTCATTTTGACGACGTTGAC 58.476 39.130 10.51 3.69 0.00 3.18
458 468 4.804608 ACATTCATTTTGACGACGTTGA 57.195 36.364 10.51 0.00 0.00 3.18
460 470 8.714179 TCTAAATACATTCATTTTGACGACGTT 58.286 29.630 0.13 0.00 28.90 3.99
461 471 8.166706 GTCTAAATACATTCATTTTGACGACGT 58.833 33.333 0.00 0.00 39.26 4.34
520 533 4.373156 ACCTCCATCCCATATTAGTTGC 57.627 45.455 0.00 0.00 0.00 4.17
641 655 6.037062 TGCATAAGATAAAGTGAACATGGACG 59.963 38.462 0.00 0.00 0.00 4.79
740 754 8.785946 GTTGTGGTTTATAAGTAGGTTTTGCTA 58.214 33.333 0.00 0.00 0.00 3.49
992 1029 3.565979 ATGGAGCCCATCTCTGCTA 57.434 52.632 1.21 0.00 40.74 3.49
1026 1077 0.805711 CGTACATGCACGCATCCTCA 60.806 55.000 5.37 0.00 34.78 3.86
1119 1170 4.147449 CCGCCGGCAGACATCAGA 62.147 66.667 28.98 0.00 0.00 3.27
1281 1332 1.043116 CACCATACCGCCTGGAGAGA 61.043 60.000 0.00 0.00 39.21 3.10
1288 1339 4.838152 CGCAGCACCATACCGCCT 62.838 66.667 0.00 0.00 0.00 5.52
1302 1353 4.610714 TACTTGCACACGGGCGCA 62.611 61.111 10.83 0.00 36.28 6.09
1455 1517 6.661377 AGATGCTACTACTCTCTGAACAAAGA 59.339 38.462 0.00 0.00 0.00 2.52
1456 1518 6.862209 AGATGCTACTACTCTCTGAACAAAG 58.138 40.000 0.00 0.00 0.00 2.77
1457 1519 6.127591 GGAGATGCTACTACTCTCTGAACAAA 60.128 42.308 0.00 0.00 36.49 2.83
1459 1521 4.884744 GGAGATGCTACTACTCTCTGAACA 59.115 45.833 0.00 0.00 36.49 3.18
1460 1522 4.277423 GGGAGATGCTACTACTCTCTGAAC 59.723 50.000 0.00 0.00 36.49 3.18
1461 1523 4.167113 AGGGAGATGCTACTACTCTCTGAA 59.833 45.833 0.00 0.00 39.60 3.02
1462 1524 3.719479 AGGGAGATGCTACTACTCTCTGA 59.281 47.826 0.00 0.00 39.60 3.27
1463 1525 4.098914 AGGGAGATGCTACTACTCTCTG 57.901 50.000 0.00 0.00 39.60 3.35
1464 1526 3.461831 ACAGGGAGATGCTACTACTCTCT 59.538 47.826 0.00 0.00 41.43 3.10
1465 1527 3.827722 ACAGGGAGATGCTACTACTCTC 58.172 50.000 0.00 0.00 35.69 3.20
1466 1528 3.957497 CAACAGGGAGATGCTACTACTCT 59.043 47.826 0.00 0.00 0.00 3.24
1610 3499 1.066918 GAACGCCGACATCCCGTAT 59.933 57.895 0.00 0.00 34.41 3.06
1719 3608 0.461961 CCCTCGAAGCCCTTGTAGAG 59.538 60.000 0.00 0.00 0.00 2.43
1916 3805 0.904649 ACTTCATGAGGATGGCGTCA 59.095 50.000 12.40 0.00 42.43 4.35
1970 3859 2.847327 AGCAGTTCTTGAGCAGCTTA 57.153 45.000 0.00 0.00 0.00 3.09
1972 3861 1.671261 CGTAGCAGTTCTTGAGCAGCT 60.671 52.381 0.00 0.00 36.20 4.24
2204 4093 1.451927 GAACTCGATGGCCCATGCA 60.452 57.895 0.00 0.00 40.13 3.96
2237 4126 1.737793 GATGGGTGGACGTTGTCATTC 59.262 52.381 0.00 0.00 33.68 2.67
2238 4127 1.351017 AGATGGGTGGACGTTGTCATT 59.649 47.619 0.00 0.00 33.68 2.57
2342 4241 3.062099 ACATTTCGAATGAATGGACGACG 59.938 43.478 11.84 0.00 34.59 5.12
2412 4346 6.767423 CCATTTTTCTTCAACAAAAGGTGGAT 59.233 34.615 0.00 0.00 34.95 3.41
2419 4353 7.227512 ACACACAACCATTTTTCTTCAACAAAA 59.772 29.630 0.00 0.00 0.00 2.44
2518 4704 9.423061 GGAAGCATGTTAAAATTACTTGATTGT 57.577 29.630 0.00 0.00 31.94 2.71
2526 4712 9.923143 AGGTAAAAGGAAGCATGTTAAAATTAC 57.077 29.630 0.00 0.00 0.00 1.89
2528 4714 8.094548 GGAGGTAAAAGGAAGCATGTTAAAATT 58.905 33.333 0.00 0.00 0.00 1.82
2532 4718 5.887754 AGGAGGTAAAAGGAAGCATGTTAA 58.112 37.500 0.00 0.00 0.00 2.01
2533 4719 5.250774 AGAGGAGGTAAAAGGAAGCATGTTA 59.749 40.000 0.00 0.00 0.00 2.41
2535 4721 3.589288 AGAGGAGGTAAAAGGAAGCATGT 59.411 43.478 0.00 0.00 0.00 3.21
2539 4725 5.048643 GTGAAAAGAGGAGGTAAAAGGAAGC 60.049 44.000 0.00 0.00 0.00 3.86
2541 4727 5.826208 GTGTGAAAAGAGGAGGTAAAAGGAA 59.174 40.000 0.00 0.00 0.00 3.36
2543 4729 4.213482 CGTGTGAAAAGAGGAGGTAAAAGG 59.787 45.833 0.00 0.00 0.00 3.11
2544 4730 5.054477 TCGTGTGAAAAGAGGAGGTAAAAG 58.946 41.667 0.00 0.00 0.00 2.27
2545 4731 5.026038 TCGTGTGAAAAGAGGAGGTAAAA 57.974 39.130 0.00 0.00 0.00 1.52
2546 4732 4.342951 TCTCGTGTGAAAAGAGGAGGTAAA 59.657 41.667 0.00 0.00 35.33 2.01
2547 4733 3.893200 TCTCGTGTGAAAAGAGGAGGTAA 59.107 43.478 0.00 0.00 35.33 2.85
2548 4734 3.493334 TCTCGTGTGAAAAGAGGAGGTA 58.507 45.455 0.00 0.00 35.33 3.08
2550 4736 2.953020 CTCTCGTGTGAAAAGAGGAGG 58.047 52.381 0.00 0.00 35.33 4.30
2554 4740 5.122512 TCTTACCTCTCGTGTGAAAAGAG 57.877 43.478 0.00 0.00 36.99 2.85
2556 4742 4.686554 CCTTCTTACCTCTCGTGTGAAAAG 59.313 45.833 0.00 0.00 0.00 2.27
2557 4743 4.100498 ACCTTCTTACCTCTCGTGTGAAAA 59.900 41.667 0.00 0.00 0.00 2.29
2558 4744 3.640029 ACCTTCTTACCTCTCGTGTGAAA 59.360 43.478 0.00 0.00 0.00 2.69
2563 4749 5.640189 TTCTTACCTTCTTACCTCTCGTG 57.360 43.478 0.00 0.00 0.00 4.35
2564 4750 6.854091 AATTCTTACCTTCTTACCTCTCGT 57.146 37.500 0.00 0.00 0.00 4.18
2565 4751 9.819267 AATTAATTCTTACCTTCTTACCTCTCG 57.181 33.333 0.00 0.00 0.00 4.04
2593 4779 9.916397 CGTCATTGATTTTATTAACTAGTGGTC 57.084 33.333 0.00 0.00 0.00 4.02
2596 4782 9.425893 CTGCGTCATTGATTTTATTAACTAGTG 57.574 33.333 0.00 0.00 0.00 2.74
2607 4793 9.060347 ACATAATAGATCTGCGTCATTGATTTT 57.940 29.630 5.18 0.00 0.00 1.82
2608 4794 8.613060 ACATAATAGATCTGCGTCATTGATTT 57.387 30.769 5.18 0.00 0.00 2.17
2609 4795 9.144747 GTACATAATAGATCTGCGTCATTGATT 57.855 33.333 5.18 0.00 0.00 2.57
2610 4796 8.526978 AGTACATAATAGATCTGCGTCATTGAT 58.473 33.333 5.18 0.00 0.00 2.57
2611 4797 7.886338 AGTACATAATAGATCTGCGTCATTGA 58.114 34.615 5.18 0.00 0.00 2.57
2612 4798 8.026026 AGAGTACATAATAGATCTGCGTCATTG 58.974 37.037 5.18 0.00 0.00 2.82
2613 4799 8.116651 AGAGTACATAATAGATCTGCGTCATT 57.883 34.615 5.18 0.00 0.00 2.57
2614 4800 7.695480 AGAGTACATAATAGATCTGCGTCAT 57.305 36.000 5.18 0.00 0.00 3.06
2615 4801 7.511959 AAGAGTACATAATAGATCTGCGTCA 57.488 36.000 5.18 0.00 0.00 4.35
2616 4802 9.710979 GATAAGAGTACATAATAGATCTGCGTC 57.289 37.037 5.18 0.00 0.00 5.19
2617 4803 9.456147 AGATAAGAGTACATAATAGATCTGCGT 57.544 33.333 5.18 0.00 0.00 5.24
2618 4804 9.929722 GAGATAAGAGTACATAATAGATCTGCG 57.070 37.037 5.18 0.00 0.00 5.18
2630 4816 9.814899 CTTTTCACATGAGAGATAAGAGTACAT 57.185 33.333 0.00 0.00 29.56 2.29
2631 4817 8.253810 CCTTTTCACATGAGAGATAAGAGTACA 58.746 37.037 0.00 0.00 29.56 2.90
2632 4818 7.708752 CCCTTTTCACATGAGAGATAAGAGTAC 59.291 40.741 0.00 0.00 29.56 2.73
2633 4819 7.147655 CCCCTTTTCACATGAGAGATAAGAGTA 60.148 40.741 0.00 0.00 29.56 2.59
2634 4820 6.352565 CCCCTTTTCACATGAGAGATAAGAGT 60.353 42.308 0.00 0.00 29.56 3.24
2635 4821 6.054295 CCCCTTTTCACATGAGAGATAAGAG 58.946 44.000 0.00 0.00 29.56 2.85
2636 4822 5.726308 TCCCCTTTTCACATGAGAGATAAGA 59.274 40.000 0.00 0.00 29.56 2.10
2637 4823 5.994250 TCCCCTTTTCACATGAGAGATAAG 58.006 41.667 0.00 5.43 0.00 1.73
2638 4824 5.104360 CCTCCCCTTTTCACATGAGAGATAA 60.104 44.000 0.00 0.00 0.00 1.75
2639 4825 4.410228 CCTCCCCTTTTCACATGAGAGATA 59.590 45.833 0.00 0.00 0.00 1.98
2640 4826 3.201708 CCTCCCCTTTTCACATGAGAGAT 59.798 47.826 0.00 0.00 0.00 2.75
2641 4827 2.573462 CCTCCCCTTTTCACATGAGAGA 59.427 50.000 0.00 0.00 0.00 3.10
2642 4828 2.307098 ACCTCCCCTTTTCACATGAGAG 59.693 50.000 0.00 0.00 0.00 3.20
2643 4829 2.348472 ACCTCCCCTTTTCACATGAGA 58.652 47.619 0.00 0.00 0.00 3.27
2644 4830 2.887151 ACCTCCCCTTTTCACATGAG 57.113 50.000 0.00 0.00 0.00 2.90
2645 4831 3.913799 TCTTACCTCCCCTTTTCACATGA 59.086 43.478 0.00 0.00 0.00 3.07
2646 4832 4.265073 CTCTTACCTCCCCTTTTCACATG 58.735 47.826 0.00 0.00 0.00 3.21
2647 4833 3.267031 CCTCTTACCTCCCCTTTTCACAT 59.733 47.826 0.00 0.00 0.00 3.21
2648 4834 2.642807 CCTCTTACCTCCCCTTTTCACA 59.357 50.000 0.00 0.00 0.00 3.58
2649 4835 2.026169 CCCTCTTACCTCCCCTTTTCAC 60.026 54.545 0.00 0.00 0.00 3.18
2650 4836 2.157911 TCCCTCTTACCTCCCCTTTTCA 60.158 50.000 0.00 0.00 0.00 2.69
2651 4837 2.239150 GTCCCTCTTACCTCCCCTTTTC 59.761 54.545 0.00 0.00 0.00 2.29
2652 4838 2.276391 GTCCCTCTTACCTCCCCTTTT 58.724 52.381 0.00 0.00 0.00 2.27
2653 4839 1.557426 GGTCCCTCTTACCTCCCCTTT 60.557 57.143 0.00 0.00 33.97 3.11
2654 4840 0.044397 GGTCCCTCTTACCTCCCCTT 59.956 60.000 0.00 0.00 33.97 3.95
2655 4841 1.160289 TGGTCCCTCTTACCTCCCCT 61.160 60.000 0.00 0.00 37.91 4.79
2656 4842 0.029989 ATGGTCCCTCTTACCTCCCC 60.030 60.000 0.00 0.00 37.91 4.81
2657 4843 1.132500 CATGGTCCCTCTTACCTCCC 58.868 60.000 0.00 0.00 37.91 4.30
2658 4844 0.470341 GCATGGTCCCTCTTACCTCC 59.530 60.000 0.00 0.00 37.91 4.30
2659 4845 1.501582 AGCATGGTCCCTCTTACCTC 58.498 55.000 0.00 0.00 37.91 3.85
2660 4846 2.868964 TAGCATGGTCCCTCTTACCT 57.131 50.000 0.00 0.00 37.91 3.08
2661 4847 3.926058 TTTAGCATGGTCCCTCTTACC 57.074 47.619 0.00 0.00 37.53 2.85
2662 4848 6.564328 CAAATTTTAGCATGGTCCCTCTTAC 58.436 40.000 0.00 0.00 0.00 2.34
2663 4849 5.127031 GCAAATTTTAGCATGGTCCCTCTTA 59.873 40.000 0.00 0.00 0.00 2.10
2664 4850 4.081476 GCAAATTTTAGCATGGTCCCTCTT 60.081 41.667 0.00 0.00 0.00 2.85
2665 4851 3.448660 GCAAATTTTAGCATGGTCCCTCT 59.551 43.478 0.00 0.00 0.00 3.69
2666 4852 3.430790 GGCAAATTTTAGCATGGTCCCTC 60.431 47.826 0.00 0.00 0.00 4.30
2667 4853 2.501316 GGCAAATTTTAGCATGGTCCCT 59.499 45.455 0.00 0.00 0.00 4.20
2668 4854 2.419990 GGGCAAATTTTAGCATGGTCCC 60.420 50.000 0.00 0.00 0.00 4.46
2669 4855 2.235898 TGGGCAAATTTTAGCATGGTCC 59.764 45.455 0.00 0.00 0.00 4.46
2670 4856 3.608316 TGGGCAAATTTTAGCATGGTC 57.392 42.857 0.00 0.00 0.00 4.02
2671 4857 4.019501 TGATTGGGCAAATTTTAGCATGGT 60.020 37.500 1.62 1.62 0.00 3.55
2672 4858 4.515361 TGATTGGGCAAATTTTAGCATGG 58.485 39.130 0.00 0.00 0.00 3.66
2673 4859 7.972832 ATATGATTGGGCAAATTTTAGCATG 57.027 32.000 3.25 0.00 0.00 4.06
2682 4868 8.806146 GGACTTGTTATATATGATTGGGCAAAT 58.194 33.333 0.00 0.00 0.00 2.32
2683 4869 8.004215 AGGACTTGTTATATATGATTGGGCAAA 58.996 33.333 0.00 0.00 0.00 3.68
2684 4870 7.526041 AGGACTTGTTATATATGATTGGGCAA 58.474 34.615 0.00 0.00 0.00 4.52
2685 4871 7.090319 AGGACTTGTTATATATGATTGGGCA 57.910 36.000 0.00 0.00 0.00 5.36
2686 4872 9.113838 CATAGGACTTGTTATATATGATTGGGC 57.886 37.037 0.00 0.00 0.00 5.36
2687 4873 9.113838 GCATAGGACTTGTTATATATGATTGGG 57.886 37.037 0.00 0.00 0.00 4.12
2688 4874 9.671279 TGCATAGGACTTGTTATATATGATTGG 57.329 33.333 0.00 0.00 0.00 3.16
2701 4887 9.218440 CCAAAATTTAAAATGCATAGGACTTGT 57.782 29.630 0.00 0.00 0.00 3.16
2702 4888 9.218440 ACCAAAATTTAAAATGCATAGGACTTG 57.782 29.630 0.00 0.00 0.00 3.16
2738 4924 9.880157 AGGATTGGTTGATGAAAATTTAGAATG 57.120 29.630 0.00 0.00 0.00 2.67
2740 4926 8.243426 CGAGGATTGGTTGATGAAAATTTAGAA 58.757 33.333 0.00 0.00 0.00 2.10
2741 4927 7.628366 GCGAGGATTGGTTGATGAAAATTTAGA 60.628 37.037 0.00 0.00 0.00 2.10
2742 4928 6.473455 GCGAGGATTGGTTGATGAAAATTTAG 59.527 38.462 0.00 0.00 0.00 1.85
2744 4930 5.170748 GCGAGGATTGGTTGATGAAAATTT 58.829 37.500 0.00 0.00 0.00 1.82
2745 4931 4.220382 TGCGAGGATTGGTTGATGAAAATT 59.780 37.500 0.00 0.00 0.00 1.82
2751 4939 0.379669 GCTGCGAGGATTGGTTGATG 59.620 55.000 0.00 0.00 0.00 3.07
2769 4957 0.531090 TATGATACCCCGCGTGTTGC 60.531 55.000 4.92 0.00 41.47 4.17
2775 4963 5.509716 TCATAACTATATGATACCCCGCG 57.490 43.478 0.00 0.00 42.30 6.46
2785 4973 9.410556 TCATGTCATCGTTGTCATAACTATATG 57.589 33.333 6.00 0.00 40.29 1.78
2791 4979 7.426456 GTGAAATCATGTCATCGTTGTCATAAC 59.574 37.037 6.00 0.00 31.62 1.89
2798 5257 4.633126 AGGAGTGAAATCATGTCATCGTTG 59.367 41.667 0.00 0.00 0.00 4.10
2801 5260 5.583854 AGAAAGGAGTGAAATCATGTCATCG 59.416 40.000 0.00 0.00 0.00 3.84
2845 5304 6.114187 ACACTTCACTTCATTGTATCCTCA 57.886 37.500 0.00 0.00 0.00 3.86
2891 5355 5.327616 TCCAAGCAATAACACATTCATGG 57.672 39.130 0.00 0.00 0.00 3.66
2945 5409 1.063070 TGGGTGCCTCCACTTACCAA 61.063 55.000 0.00 0.00 41.75 3.67
2998 5462 8.191446 TCTATCTTGAATGTAGGAGTTCTTTCG 58.809 37.037 0.00 0.00 0.00 3.46
3021 5485 3.130516 CAGAATGGTAAGTCGGTGCTCTA 59.869 47.826 0.00 0.00 0.00 2.43
3022 5486 2.093973 CAGAATGGTAAGTCGGTGCTCT 60.094 50.000 0.00 0.00 0.00 4.09
3037 5501 9.512435 GTGTTTCTGATAATGAAATCCAGAATG 57.488 33.333 0.00 0.00 36.10 2.67
3038 5502 9.471702 AGTGTTTCTGATAATGAAATCCAGAAT 57.528 29.630 0.00 0.00 36.10 2.40
3039 5503 8.733458 CAGTGTTTCTGATAATGAAATCCAGAA 58.267 33.333 0.00 0.00 46.27 3.02
3040 5504 7.337689 CCAGTGTTTCTGATAATGAAATCCAGA 59.662 37.037 0.00 0.00 46.27 3.86
3041 5505 7.337689 TCCAGTGTTTCTGATAATGAAATCCAG 59.662 37.037 0.00 0.00 46.27 3.86
3069 5533 6.469410 AGTACCAATCATAGTCGTTTGGAAA 58.531 36.000 7.49 0.00 40.89 3.13
3098 5562 0.179119 GTGGTATTCCGGTCGGTCTG 60.179 60.000 9.36 0.00 36.30 3.51
3104 5568 2.159142 AGATTCACGTGGTATTCCGGTC 60.159 50.000 17.00 1.47 36.30 4.79
3111 5575 3.181465 GGATGGTCAGATTCACGTGGTAT 60.181 47.826 17.00 9.73 0.00 2.73
3116 5580 2.768527 AGATGGATGGTCAGATTCACGT 59.231 45.455 0.00 0.00 0.00 4.49
3117 5581 3.465742 AGATGGATGGTCAGATTCACG 57.534 47.619 0.00 0.00 0.00 4.35
3139 5603 3.670625 TGGACAAAAGTCGTTATCCCTG 58.329 45.455 0.00 0.00 0.00 4.45
3145 5609 7.747155 TTATTTGGATGGACAAAAGTCGTTA 57.253 32.000 0.00 0.00 42.91 3.18
3154 5618 8.333235 ACTACTACCATTTATTTGGATGGACAA 58.667 33.333 9.20 0.00 44.49 3.18
3175 5639 5.309806 ACCCACTTTCTGGTTGATAACTACT 59.690 40.000 0.00 0.00 38.60 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.