Multiple sequence alignment - TraesCS3D01G539000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G539000 chr3D 100.000 4228 0 0 1 4228 611257939 611253712 0.000000e+00 7808.0
1 TraesCS3D01G539000 chr3A 90.155 3088 203 31 1170 4228 746179600 746176585 0.000000e+00 3925.0
2 TraesCS3D01G539000 chr3A 92.683 123 5 4 356 477 746180193 746180074 1.560000e-39 174.0
3 TraesCS3D01G539000 chr3A 92.308 65 3 2 216 278 746180286 746180222 1.620000e-14 91.6
4 TraesCS3D01G539000 chr3B 85.840 2832 267 61 1434 4228 829017823 829015089 0.000000e+00 2885.0
5 TraesCS3D01G539000 chr3B 79.090 703 67 41 75 744 829019129 829018474 1.090000e-110 411.0
6 TraesCS3D01G539000 chr3B 91.949 236 19 0 936 1171 829018297 829018062 8.760000e-87 331.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G539000 chr3D 611253712 611257939 4227 True 7808.000000 7808 100.000000 1 4228 1 chr3D.!!$R1 4227
1 TraesCS3D01G539000 chr3A 746176585 746180286 3701 True 1396.866667 3925 91.715333 216 4228 3 chr3A.!!$R1 4012
2 TraesCS3D01G539000 chr3B 829015089 829019129 4040 True 1209.000000 2885 85.626333 75 4228 3 chr3B.!!$R1 4153

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
850 948 0.104934 AGTGTGGGGTCTCTTCCTGT 60.105 55.0 0.0 0.0 0.0 4.00 F
2196 2381 0.238289 CATGTTTCACCTGTCCGCAC 59.762 55.0 0.0 0.0 0.0 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2647 2853 0.034896 CGTATACATCTGGGGCCCAC 59.965 60.0 24.76 14.1 0.0 4.61 R
3388 3611 0.900421 TCCTGCTGATCACTGACCAG 59.100 55.0 0.00 0.0 0.0 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.768253 TAGCATGACAAGGTGACAGG 57.232 50.000 0.00 0.00 0.00 4.00
22 23 1.059098 AGCATGACAAGGTGACAGGA 58.941 50.000 0.00 0.00 0.00 3.86
23 24 1.632409 AGCATGACAAGGTGACAGGAT 59.368 47.619 0.00 0.00 0.00 3.24
24 25 1.741706 GCATGACAAGGTGACAGGATG 59.258 52.381 0.00 0.00 46.00 3.51
25 26 2.616256 GCATGACAAGGTGACAGGATGA 60.616 50.000 0.00 0.00 39.69 2.92
26 27 3.268330 CATGACAAGGTGACAGGATGAG 58.732 50.000 0.00 0.00 39.69 2.90
27 28 1.625315 TGACAAGGTGACAGGATGAGG 59.375 52.381 0.00 0.00 39.69 3.86
28 29 0.987294 ACAAGGTGACAGGATGAGGG 59.013 55.000 0.00 0.00 39.69 4.30
29 30 0.254178 CAAGGTGACAGGATGAGGGG 59.746 60.000 0.00 0.00 39.69 4.79
30 31 0.178861 AAGGTGACAGGATGAGGGGT 60.179 55.000 0.00 0.00 39.69 4.95
31 32 0.716591 AGGTGACAGGATGAGGGGTA 59.283 55.000 0.00 0.00 39.69 3.69
32 33 1.080498 AGGTGACAGGATGAGGGGTAA 59.920 52.381 0.00 0.00 39.69 2.85
33 34 2.127708 GGTGACAGGATGAGGGGTAAT 58.872 52.381 0.00 0.00 39.69 1.89
34 35 2.509964 GGTGACAGGATGAGGGGTAATT 59.490 50.000 0.00 0.00 39.69 1.40
35 36 3.433740 GGTGACAGGATGAGGGGTAATTC 60.434 52.174 0.00 0.00 39.69 2.17
36 37 3.199946 GTGACAGGATGAGGGGTAATTCA 59.800 47.826 0.00 0.00 39.69 2.57
37 38 4.047166 TGACAGGATGAGGGGTAATTCAT 58.953 43.478 0.00 0.00 39.69 2.57
38 39 4.478317 TGACAGGATGAGGGGTAATTCATT 59.522 41.667 0.00 0.00 39.69 2.57
39 40 5.053978 ACAGGATGAGGGGTAATTCATTC 57.946 43.478 0.00 0.00 39.69 2.67
40 41 4.728860 ACAGGATGAGGGGTAATTCATTCT 59.271 41.667 0.00 0.00 39.67 2.40
41 42 5.194537 ACAGGATGAGGGGTAATTCATTCTT 59.805 40.000 0.00 0.00 37.52 2.52
42 43 6.389869 ACAGGATGAGGGGTAATTCATTCTTA 59.610 38.462 0.00 0.00 37.52 2.10
43 44 7.091993 ACAGGATGAGGGGTAATTCATTCTTAA 60.092 37.037 0.00 0.00 37.52 1.85
44 45 7.229506 CAGGATGAGGGGTAATTCATTCTTAAC 59.770 40.741 0.00 0.00 37.52 2.01
45 46 7.129504 AGGATGAGGGGTAATTCATTCTTAACT 59.870 37.037 0.00 0.00 36.47 2.24
46 47 8.437575 GGATGAGGGGTAATTCATTCTTAACTA 58.562 37.037 0.00 0.00 34.33 2.24
47 48 9.847224 GATGAGGGGTAATTCATTCTTAACTAA 57.153 33.333 0.00 0.00 34.33 2.24
48 49 9.853177 ATGAGGGGTAATTCATTCTTAACTAAG 57.147 33.333 0.00 0.00 30.06 2.18
49 50 8.272173 TGAGGGGTAATTCATTCTTAACTAAGG 58.728 37.037 0.00 0.00 34.14 2.69
50 51 8.401955 AGGGGTAATTCATTCTTAACTAAGGA 57.598 34.615 0.00 0.00 34.14 3.36
51 52 9.015146 AGGGGTAATTCATTCTTAACTAAGGAT 57.985 33.333 0.00 0.00 31.69 3.24
52 53 9.642343 GGGGTAATTCATTCTTAACTAAGGATT 57.358 33.333 0.00 0.00 29.04 3.01
61 62 9.294030 CATTCTTAACTAAGGATTTGATTGTGC 57.706 33.333 0.00 0.00 29.04 4.57
62 63 7.391148 TCTTAACTAAGGATTTGATTGTGCC 57.609 36.000 0.00 0.00 34.14 5.01
63 64 6.945435 TCTTAACTAAGGATTTGATTGTGCCA 59.055 34.615 0.00 0.00 34.14 4.92
64 65 5.391312 AACTAAGGATTTGATTGTGCCAC 57.609 39.130 0.00 0.00 0.00 5.01
65 66 3.440173 ACTAAGGATTTGATTGTGCCACG 59.560 43.478 0.00 0.00 0.00 4.94
66 67 1.909700 AGGATTTGATTGTGCCACGT 58.090 45.000 0.00 0.00 0.00 4.49
67 68 3.066291 AGGATTTGATTGTGCCACGTA 57.934 42.857 0.00 0.00 0.00 3.57
68 69 3.009723 AGGATTTGATTGTGCCACGTAG 58.990 45.455 0.00 0.00 0.00 3.51
69 70 2.097466 GGATTTGATTGTGCCACGTAGG 59.903 50.000 0.00 0.00 41.84 3.18
83 84 4.023234 TAGGCGGCGCTCCCAAAA 62.023 61.111 32.30 6.53 0.00 2.44
93 94 1.543802 CGCTCCCAAAAATGGTAAGCA 59.456 47.619 15.45 0.00 36.32 3.91
138 139 2.583441 GCCTTTTGGAACCCAGCCC 61.583 63.158 0.00 0.00 44.07 5.19
168 186 1.517242 CAGCAGATATTTCCGGCCTC 58.483 55.000 0.00 0.00 0.00 4.70
191 209 2.745492 AGTCGTCGTCGTCCTCCC 60.745 66.667 1.33 0.00 38.33 4.30
253 271 1.215423 ACAAGCCAACAGAACCTTCCT 59.785 47.619 0.00 0.00 0.00 3.36
257 277 1.523758 CCAACAGAACCTTCCTTCCG 58.476 55.000 0.00 0.00 0.00 4.30
260 280 1.718280 ACAGAACCTTCCTTCCGTCT 58.282 50.000 0.00 0.00 0.00 4.18
477 497 0.637743 ACCTCTCCTAACTCCCTCCC 59.362 60.000 0.00 0.00 0.00 4.30
478 498 0.105401 CCTCTCCTAACTCCCTCCCC 60.105 65.000 0.00 0.00 0.00 4.81
479 499 0.938192 CTCTCCTAACTCCCTCCCCT 59.062 60.000 0.00 0.00 0.00 4.79
480 500 0.935194 TCTCCTAACTCCCTCCCCTC 59.065 60.000 0.00 0.00 0.00 4.30
481 501 0.468400 CTCCTAACTCCCTCCCCTCG 60.468 65.000 0.00 0.00 0.00 4.63
482 502 1.219824 TCCTAACTCCCTCCCCTCGT 61.220 60.000 0.00 0.00 0.00 4.18
483 503 0.756070 CCTAACTCCCTCCCCTCGTC 60.756 65.000 0.00 0.00 0.00 4.20
484 504 0.259356 CTAACTCCCTCCCCTCGTCT 59.741 60.000 0.00 0.00 0.00 4.18
485 505 0.258194 TAACTCCCTCCCCTCGTCTC 59.742 60.000 0.00 0.00 0.00 3.36
486 506 2.123640 CTCCCTCCCCTCGTCTCC 60.124 72.222 0.00 0.00 0.00 3.71
492 512 3.756783 CCCCTCGTCTCCCCTCCT 61.757 72.222 0.00 0.00 0.00 3.69
498 518 1.224039 CGTCTCCCCTCCTCTACGT 59.776 63.158 0.00 0.00 0.00 3.57
517 537 2.125106 CCGCCTCACCCAGCTAAC 60.125 66.667 0.00 0.00 0.00 2.34
540 560 3.465403 CTCCCTCACTCGCCCCTG 61.465 72.222 0.00 0.00 0.00 4.45
544 564 4.154347 CTCACTCGCCCCTGCCTC 62.154 72.222 0.00 0.00 0.00 4.70
572 592 3.564027 CCGCGGCATTTCTCGACC 61.564 66.667 14.67 0.00 0.00 4.79
575 595 2.750888 GCGGCATTTCTCGACCACC 61.751 63.158 0.00 0.00 0.00 4.61
576 596 1.375396 CGGCATTTCTCGACCACCA 60.375 57.895 0.00 0.00 0.00 4.17
577 597 0.744414 CGGCATTTCTCGACCACCAT 60.744 55.000 0.00 0.00 0.00 3.55
578 598 1.017387 GGCATTTCTCGACCACCATC 58.983 55.000 0.00 0.00 0.00 3.51
579 599 1.407437 GGCATTTCTCGACCACCATCT 60.407 52.381 0.00 0.00 0.00 2.90
580 600 1.667724 GCATTTCTCGACCACCATCTG 59.332 52.381 0.00 0.00 0.00 2.90
583 603 2.835701 TTCTCGACCACCATCTGCGC 62.836 60.000 0.00 0.00 0.00 6.09
584 604 3.647649 CTCGACCACCATCTGCGCA 62.648 63.158 10.98 10.98 0.00 6.09
604 663 3.374330 CGTTGATCGGCGACTGAC 58.626 61.111 13.76 10.02 35.71 3.51
605 664 2.158959 CGTTGATCGGCGACTGACC 61.159 63.158 13.76 0.00 35.71 4.02
617 676 2.930019 CTGACCCCACCCAGCTCA 60.930 66.667 0.00 0.00 0.00 4.26
618 677 2.930019 TGACCCCACCCAGCTCAG 60.930 66.667 0.00 0.00 0.00 3.35
626 685 2.436292 CCCAGCTCAGCTCAGCAC 60.436 66.667 13.67 0.00 42.40 4.40
635 694 0.610174 CAGCTCAGCACCTCAGGTAA 59.390 55.000 0.00 0.00 32.11 2.85
638 697 3.107601 AGCTCAGCACCTCAGGTAATTA 58.892 45.455 0.00 0.00 32.11 1.40
642 701 4.832248 TCAGCACCTCAGGTAATTAACAG 58.168 43.478 0.00 0.00 32.11 3.16
643 702 4.530553 TCAGCACCTCAGGTAATTAACAGA 59.469 41.667 0.00 0.00 32.11 3.41
652 711 5.050490 CAGGTAATTAACAGACAGGGATCG 58.950 45.833 2.78 0.00 0.00 3.69
653 712 4.715297 AGGTAATTAACAGACAGGGATCGT 59.285 41.667 2.78 0.00 0.00 3.73
682 741 1.094073 ATCTGCGCCTTCACAGCATC 61.094 55.000 4.18 0.00 40.35 3.91
716 775 5.938125 GCCCTGTTTGTTTCTAGTAAGATCA 59.062 40.000 0.00 0.00 0.00 2.92
720 779 7.095187 CCTGTTTGTTTCTAGTAAGATCACACC 60.095 40.741 0.00 0.00 29.32 4.16
721 780 7.276658 TGTTTGTTTCTAGTAAGATCACACCA 58.723 34.615 0.00 0.00 29.32 4.17
722 781 7.225931 TGTTTGTTTCTAGTAAGATCACACCAC 59.774 37.037 0.00 0.00 29.32 4.16
724 783 7.004555 TGTTTCTAGTAAGATCACACCACAT 57.995 36.000 0.00 0.00 0.00 3.21
725 784 8.129496 TGTTTCTAGTAAGATCACACCACATA 57.871 34.615 0.00 0.00 0.00 2.29
726 785 8.033038 TGTTTCTAGTAAGATCACACCACATAC 58.967 37.037 0.00 0.00 0.00 2.39
727 786 6.373186 TCTAGTAAGATCACACCACATACG 57.627 41.667 0.00 0.00 0.00 3.06
728 787 4.386867 AGTAAGATCACACCACATACGG 57.613 45.455 0.00 0.00 0.00 4.02
744 803 2.900273 GGTGAGCTGGCCACGATA 59.100 61.111 0.00 0.00 35.48 2.92
770 849 6.864165 GTCCAAGTAGAGAGTTCACAAAGTAG 59.136 42.308 0.00 0.00 0.00 2.57
774 853 8.973378 CAAGTAGAGAGTTCACAAAGTAGAAAG 58.027 37.037 0.00 0.00 0.00 2.62
777 856 5.367060 AGAGAGTTCACAAAGTAGAAAGGGT 59.633 40.000 0.00 0.00 0.00 4.34
778 857 5.368989 AGAGTTCACAAAGTAGAAAGGGTG 58.631 41.667 0.00 0.00 0.00 4.61
779 858 4.461198 AGTTCACAAAGTAGAAAGGGTGG 58.539 43.478 0.00 0.00 0.00 4.61
780 859 2.858745 TCACAAAGTAGAAAGGGTGGC 58.141 47.619 0.00 0.00 0.00 5.01
781 860 2.173782 TCACAAAGTAGAAAGGGTGGCA 59.826 45.455 0.00 0.00 0.00 4.92
782 861 3.157087 CACAAAGTAGAAAGGGTGGCAT 58.843 45.455 0.00 0.00 0.00 4.40
783 862 4.042311 TCACAAAGTAGAAAGGGTGGCATA 59.958 41.667 0.00 0.00 0.00 3.14
784 863 4.949856 CACAAAGTAGAAAGGGTGGCATAT 59.050 41.667 0.00 0.00 0.00 1.78
787 866 5.968676 AAGTAGAAAGGGTGGCATATACA 57.031 39.130 0.00 0.00 0.00 2.29
789 868 3.214696 AGAAAGGGTGGCATATACAGC 57.785 47.619 0.00 1.32 35.71 4.40
800 898 3.461061 GCATATACAGCACTCTTCTGCA 58.539 45.455 0.00 0.00 39.86 4.41
802 900 2.001812 ATACAGCACTCTTCTGCACG 57.998 50.000 0.00 0.00 39.86 5.34
806 904 2.037136 GCACTCTTCTGCACGGCAT 61.037 57.895 0.00 0.00 38.13 4.40
807 905 1.580845 GCACTCTTCTGCACGGCATT 61.581 55.000 0.00 0.00 38.13 3.56
808 906 0.877071 CACTCTTCTGCACGGCATTT 59.123 50.000 0.00 0.00 38.13 2.32
811 909 2.484264 ACTCTTCTGCACGGCATTTTAC 59.516 45.455 0.00 0.00 38.13 2.01
812 910 1.463056 TCTTCTGCACGGCATTTTACG 59.537 47.619 0.00 0.00 38.13 3.18
813 911 0.109964 TTCTGCACGGCATTTTACGC 60.110 50.000 0.00 0.00 38.13 4.42
814 912 1.208870 CTGCACGGCATTTTACGCA 59.791 52.632 0.00 0.00 38.13 5.24
815 913 0.179166 CTGCACGGCATTTTACGCAT 60.179 50.000 0.00 0.00 38.13 4.73
817 915 1.336332 TGCACGGCATTTTACGCATTT 60.336 42.857 0.00 0.00 31.71 2.32
818 916 1.058979 GCACGGCATTTTACGCATTTG 59.941 47.619 0.00 0.00 0.00 2.32
819 917 2.590073 CACGGCATTTTACGCATTTGA 58.410 42.857 0.00 0.00 0.00 2.69
821 919 3.611986 CACGGCATTTTACGCATTTGATT 59.388 39.130 0.00 0.00 0.00 2.57
822 920 4.091220 CACGGCATTTTACGCATTTGATTT 59.909 37.500 0.00 0.00 0.00 2.17
823 921 4.688413 ACGGCATTTTACGCATTTGATTTT 59.312 33.333 0.00 0.00 0.00 1.82
824 922 5.178438 ACGGCATTTTACGCATTTGATTTTT 59.822 32.000 0.00 0.00 0.00 1.94
825 923 5.727592 CGGCATTTTACGCATTTGATTTTTC 59.272 36.000 0.00 0.00 0.00 2.29
827 925 5.727592 GCATTTTACGCATTTGATTTTTCGG 59.272 36.000 0.00 0.00 0.00 4.30
829 927 1.708822 ACGCATTTGATTTTTCGGGC 58.291 45.000 0.00 0.00 0.00 6.13
831 929 2.490115 ACGCATTTGATTTTTCGGGCTA 59.510 40.909 0.00 0.00 0.00 3.93
832 930 3.108144 CGCATTTGATTTTTCGGGCTAG 58.892 45.455 0.00 0.00 0.00 3.42
834 932 3.859386 GCATTTGATTTTTCGGGCTAGTG 59.141 43.478 0.00 0.00 0.00 2.74
836 934 4.497473 TTTGATTTTTCGGGCTAGTGTG 57.503 40.909 0.00 0.00 0.00 3.82
837 935 2.432444 TGATTTTTCGGGCTAGTGTGG 58.568 47.619 0.00 0.00 0.00 4.17
838 936 1.743394 GATTTTTCGGGCTAGTGTGGG 59.257 52.381 0.00 0.00 0.00 4.61
839 937 0.250989 TTTTTCGGGCTAGTGTGGGG 60.251 55.000 0.00 0.00 0.00 4.96
841 939 1.833787 TTTCGGGCTAGTGTGGGGTC 61.834 60.000 0.00 0.00 0.00 4.46
842 940 2.683933 CGGGCTAGTGTGGGGTCT 60.684 66.667 0.00 0.00 0.00 3.85
845 943 0.910088 GGGCTAGTGTGGGGTCTCTT 60.910 60.000 0.00 0.00 0.00 2.85
846 944 0.537653 GGCTAGTGTGGGGTCTCTTC 59.462 60.000 0.00 0.00 0.00 2.87
847 945 0.537653 GCTAGTGTGGGGTCTCTTCC 59.462 60.000 0.00 0.00 0.00 3.46
848 946 1.897647 GCTAGTGTGGGGTCTCTTCCT 60.898 57.143 0.00 0.00 0.00 3.36
849 947 1.827969 CTAGTGTGGGGTCTCTTCCTG 59.172 57.143 0.00 0.00 0.00 3.86
850 948 0.104934 AGTGTGGGGTCTCTTCCTGT 60.105 55.000 0.00 0.00 0.00 4.00
851 949 0.765510 GTGTGGGGTCTCTTCCTGTT 59.234 55.000 0.00 0.00 0.00 3.16
852 950 1.975680 GTGTGGGGTCTCTTCCTGTTA 59.024 52.381 0.00 0.00 0.00 2.41
853 951 2.028020 GTGTGGGGTCTCTTCCTGTTAG 60.028 54.545 0.00 0.00 0.00 2.34
864 962 3.876914 TCTTCCTGTTAGTGCAACAAGTG 59.123 43.478 0.00 0.00 46.37 3.16
865 963 2.571212 TCCTGTTAGTGCAACAAGTGG 58.429 47.619 0.00 0.00 46.37 4.00
867 965 1.001378 CTGTTAGTGCAACAAGTGGCC 60.001 52.381 0.00 0.00 46.37 5.36
871 969 4.149019 TGCAACAAGTGGCCCCCA 62.149 61.111 0.00 0.00 0.00 4.96
883 981 1.676967 GCCCCCAAGAGCAAGAGTG 60.677 63.158 0.00 0.00 0.00 3.51
890 988 1.345741 CAAGAGCAAGAGTGGAGTGGA 59.654 52.381 0.00 0.00 0.00 4.02
894 992 3.450457 AGAGCAAGAGTGGAGTGGATTAG 59.550 47.826 0.00 0.00 0.00 1.73
903 1001 3.643792 GTGGAGTGGATTAGTAGAGGCAT 59.356 47.826 0.00 0.00 0.00 4.40
904 1002 4.101741 GTGGAGTGGATTAGTAGAGGCATT 59.898 45.833 0.00 0.00 0.00 3.56
911 1009 5.584649 TGGATTAGTAGAGGCATTTTTCACG 59.415 40.000 0.00 0.00 0.00 4.35
912 1010 4.939509 TTAGTAGAGGCATTTTTCACGC 57.060 40.909 0.00 0.00 0.00 5.34
918 1016 5.132897 AGAGGCATTTTTCACGCATTTTA 57.867 34.783 0.00 0.00 0.00 1.52
933 1031 5.914635 ACGCATTTTATTTTATCCGCTGATG 59.085 36.000 0.20 0.00 32.18 3.07
934 1032 5.164158 CGCATTTTATTTTATCCGCTGATGC 60.164 40.000 0.20 0.00 34.44 3.91
949 1085 2.797156 CTGATGCGGTTGCTATGTACTC 59.203 50.000 0.00 0.00 43.34 2.59
993 1129 4.786507 TCATCATGCAAAACTCGTTTCAG 58.213 39.130 0.00 0.00 31.45 3.02
1041 1177 3.788227 ACAAGTTGGCTGGTAATCTGA 57.212 42.857 7.96 0.00 0.00 3.27
1056 1192 4.314440 TGACCTGTCGCTGGCACC 62.314 66.667 3.36 0.00 0.00 5.01
1071 1207 1.137086 GGCACCTCTCATCGCTTCTTA 59.863 52.381 0.00 0.00 0.00 2.10
1075 1211 4.297510 CACCTCTCATCGCTTCTTATGAG 58.702 47.826 6.07 6.07 46.90 2.90
1088 1224 5.105595 GCTTCTTATGAGCCCTCAAATGTTT 60.106 40.000 1.62 0.00 43.58 2.83
1127 1263 0.753848 TCTCCGTCCACAGTCACACA 60.754 55.000 0.00 0.00 0.00 3.72
1130 1266 1.140052 TCCGTCCACAGTCACACATTT 59.860 47.619 0.00 0.00 0.00 2.32
1151 1287 9.691362 ACATTTGTGATAACCATAAACTTTGTC 57.309 29.630 0.00 0.00 38.41 3.18
1152 1288 8.849490 CATTTGTGATAACCATAAACTTTGTCG 58.151 33.333 0.00 0.00 38.41 4.35
1153 1289 7.731882 TTGTGATAACCATAAACTTTGTCGA 57.268 32.000 0.00 0.00 0.00 4.20
1154 1290 7.915293 TGTGATAACCATAAACTTTGTCGAT 57.085 32.000 0.00 0.00 0.00 3.59
1155 1291 8.330466 TGTGATAACCATAAACTTTGTCGATT 57.670 30.769 0.00 0.00 0.00 3.34
1156 1292 8.233868 TGTGATAACCATAAACTTTGTCGATTG 58.766 33.333 0.00 0.00 0.00 2.67
1157 1293 8.447833 GTGATAACCATAAACTTTGTCGATTGA 58.552 33.333 0.00 0.00 0.00 2.57
1158 1294 9.173021 TGATAACCATAAACTTTGTCGATTGAT 57.827 29.630 0.00 0.00 0.00 2.57
1159 1295 9.438291 GATAACCATAAACTTTGTCGATTGATG 57.562 33.333 0.00 0.00 0.00 3.07
1160 1296 7.447374 AACCATAAACTTTGTCGATTGATGA 57.553 32.000 0.00 0.00 0.00 2.92
1161 1297 7.630242 ACCATAAACTTTGTCGATTGATGAT 57.370 32.000 0.00 0.00 0.00 2.45
1162 1298 8.731275 ACCATAAACTTTGTCGATTGATGATA 57.269 30.769 0.00 0.00 0.00 2.15
1163 1299 9.342308 ACCATAAACTTTGTCGATTGATGATAT 57.658 29.630 0.00 0.00 0.00 1.63
1164 1300 9.603298 CCATAAACTTTGTCGATTGATGATATG 57.397 33.333 0.00 0.00 0.00 1.78
1168 1304 8.948631 AACTTTGTCGATTGATGATATGTAGT 57.051 30.769 0.00 0.00 0.00 2.73
1187 1323 7.359262 TGTAGTTTCACAGATTTGTTATCCG 57.641 36.000 0.00 0.00 34.62 4.18
1198 1334 7.118825 ACAGATTTGTTATCCGCTGATATGATG 59.881 37.037 0.00 0.00 33.54 3.07
1210 1346 6.149308 CCGCTGATATGATGGCTGTTATTTAA 59.851 38.462 0.00 0.00 0.00 1.52
1221 1357 7.706281 TGGCTGTTATTTAATTTGTGTTGTG 57.294 32.000 0.00 0.00 0.00 3.33
1222 1358 7.268586 TGGCTGTTATTTAATTTGTGTTGTGT 58.731 30.769 0.00 0.00 0.00 3.72
1256 1393 1.002868 ACTGACAGTGGAGCATGGC 60.003 57.895 7.47 0.00 0.00 4.40
1289 1426 6.097554 ACCTATTCTGTCTGTCCTTGATGTAG 59.902 42.308 0.00 0.00 0.00 2.74
1290 1427 3.876274 TCTGTCTGTCCTTGATGTAGC 57.124 47.619 0.00 0.00 0.00 3.58
1292 1429 1.281899 GTCTGTCCTTGATGTAGCGC 58.718 55.000 0.00 0.00 0.00 5.92
1309 1446 3.296628 AGCGCACTTAATTTGTTCAACG 58.703 40.909 11.47 0.00 0.00 4.10
1321 1458 9.611284 TTAATTTGTTCAACGAATGAGATTCAG 57.389 29.630 3.60 0.00 39.77 3.02
1326 1463 3.064408 TCAACGAATGAGATTCAGCATGC 59.936 43.478 10.51 10.51 39.22 4.06
1327 1464 2.635714 ACGAATGAGATTCAGCATGCA 58.364 42.857 21.98 0.00 39.22 3.96
1335 1475 9.451227 GAATGAGATTCAGCATGCAAAACTTGC 62.451 40.741 21.98 4.41 46.22 4.01
1357 1497 5.480073 TGCTTGGTTATGAATTTAGCCTTGT 59.520 36.000 0.00 0.00 0.00 3.16
1396 1536 0.331278 TCAGGAATTTGACCGGCCAT 59.669 50.000 0.00 0.00 0.00 4.40
1425 1565 2.912956 TCCTGTTGCTTCTTATGACCCT 59.087 45.455 0.00 0.00 0.00 4.34
1474 1645 1.125093 ATCCCTGTCCACCGTCACAA 61.125 55.000 0.00 0.00 0.00 3.33
1491 1662 4.877823 GTCACAATCTGCTGATGACCATAA 59.122 41.667 6.88 0.00 32.44 1.90
1498 1674 7.741027 ATCTGCTGATGACCATAACTTTATG 57.259 36.000 5.15 2.44 40.10 1.90
1499 1675 6.888105 TCTGCTGATGACCATAACTTTATGA 58.112 36.000 10.07 0.00 42.38 2.15
1511 1688 9.125026 ACCATAACTTTATGAATTGATGGTCTC 57.875 33.333 10.07 0.00 41.49 3.36
1525 1702 5.907207 TGATGGTCTCTAGTTTCTATGCAC 58.093 41.667 0.00 0.00 0.00 4.57
1613 1790 1.339438 TGAAAGAGTGCTGATGGAGGC 60.339 52.381 0.00 0.00 0.00 4.70
1630 1807 1.446966 GCTCACGGTGCCTCTTCTC 60.447 63.158 2.51 0.00 0.00 2.87
1656 1833 2.414994 AGGATGACATGGTTCTGCTG 57.585 50.000 0.00 0.00 0.00 4.41
1763 1940 2.238521 GGATGCTGGTTCTTTGGACAA 58.761 47.619 0.00 0.00 0.00 3.18
1775 1952 7.451255 TGGTTCTTTGGACAATGAAGTTGATAT 59.549 33.333 12.02 0.00 40.37 1.63
1843 2020 1.079127 AACTCCCGTGCAATCTCCG 60.079 57.895 0.00 0.00 0.00 4.63
1860 2037 2.480419 CTCCGATCACAGTGAACCAAAC 59.520 50.000 7.50 0.00 0.00 2.93
1981 2166 7.004555 ACTCTGTGTGGTATCTTTATGAACA 57.995 36.000 0.00 0.00 0.00 3.18
1987 2172 6.828785 GTGTGGTATCTTTATGAACAGGGAAT 59.171 38.462 0.00 0.00 0.00 3.01
2044 2229 2.638363 GGAAAGTAGGAAGGACACCAGT 59.362 50.000 0.00 0.00 0.00 4.00
2063 2248 3.679389 AGTAAGATGGGTGTTCTTGCTG 58.321 45.455 3.70 0.00 42.29 4.41
2071 2256 5.435686 TGGGTGTTCTTGCTGTAATATCT 57.564 39.130 0.00 0.00 0.00 1.98
2074 2259 5.066505 GGGTGTTCTTGCTGTAATATCTTGG 59.933 44.000 0.00 0.00 0.00 3.61
2086 2271 7.113965 GCTGTAATATCTTGGCATTGATTTTCG 59.886 37.037 8.44 0.00 0.00 3.46
2087 2272 6.917477 TGTAATATCTTGGCATTGATTTTCGC 59.083 34.615 8.44 5.75 0.00 4.70
2088 2273 5.779529 ATATCTTGGCATTGATTTTCGCT 57.220 34.783 8.44 0.00 0.00 4.93
2100 2285 2.923605 TTTTCGCTGGTGAAAAACGT 57.076 40.000 16.42 0.00 42.97 3.99
2101 2286 2.923605 TTTCGCTGGTGAAAAACGTT 57.076 40.000 6.82 0.00 35.04 3.99
2115 2300 7.634432 GGTGAAAAACGTTTTTAGCAAATTCAG 59.366 33.333 32.57 0.00 40.21 3.02
2125 2310 1.891150 AGCAAATTCAGAAGGCAGTGG 59.109 47.619 6.92 0.00 0.00 4.00
2131 2316 6.555315 CAAATTCAGAAGGCAGTGGTAATAC 58.445 40.000 0.00 0.00 0.00 1.89
2196 2381 0.238289 CATGTTTCACCTGTCCGCAC 59.762 55.000 0.00 0.00 0.00 5.34
2232 2417 7.226720 GGAAGTTCTAACTGACTTGTTTGATGA 59.773 37.037 2.25 0.00 39.66 2.92
2289 2474 9.730420 CCAATTATACTATTTGTTGTGCCTAAC 57.270 33.333 0.00 0.00 0.00 2.34
2303 2488 4.092237 TGTGCCTAACGAATTATTGTGTCG 59.908 41.667 0.00 0.00 40.56 4.35
2333 2525 2.040813 AGGCTCATCAATCTGTGGTGTT 59.959 45.455 0.00 0.00 39.59 3.32
2339 2531 7.148086 GGCTCATCAATCTGTGGTGTTAATTTA 60.148 37.037 0.00 0.00 39.59 1.40
2354 2546 9.129209 GGTGTTAATTTAAAAGAGCTAAGCAAG 57.871 33.333 0.00 0.00 0.00 4.01
2393 2585 4.611310 AGATTGATCATGAAACTGTGCG 57.389 40.909 0.00 0.00 0.00 5.34
2460 2652 1.356059 TGGTACATTTAAGCTGGGCCA 59.644 47.619 5.85 5.85 0.00 5.36
2474 2666 1.308998 GGGCCATCACGATAAGTTGG 58.691 55.000 4.39 0.00 34.58 3.77
2489 2681 4.612264 AAGTTGGTACTGTAATCGTGGT 57.388 40.909 0.00 0.00 34.01 4.16
2492 2684 3.788333 TGGTACTGTAATCGTGGTAGC 57.212 47.619 0.00 0.00 34.51 3.58
2503 2695 5.551760 AATCGTGGTAGCTTTTCTGATTG 57.448 39.130 0.00 0.00 0.00 2.67
2538 2744 2.248248 TCGTTCCCTGACTCACATTCT 58.752 47.619 0.00 0.00 0.00 2.40
2581 2787 0.523966 CGTCAAGGCTTCTCGTCTCT 59.476 55.000 0.00 0.00 0.00 3.10
2599 2805 1.153168 TGCTATGAAAGGAGGCCGC 60.153 57.895 0.00 0.00 0.00 6.53
2636 2842 2.270205 CATCGCCAACTGGAGCCT 59.730 61.111 0.00 0.00 37.39 4.58
2777 2983 2.243810 AGCAGAAGAAGAGGAAGTCGT 58.756 47.619 0.00 0.00 0.00 4.34
2800 3006 1.668151 GAACGGCAAGAAGAGCGGT 60.668 57.895 0.00 0.00 45.71 5.68
2809 3015 3.011517 AAGAGCGGTGGCCTCCAT 61.012 61.111 23.27 11.27 41.24 3.41
2880 3086 7.142680 CACAAACATTTCGTATTACCACCTTT 58.857 34.615 0.00 0.00 0.00 3.11
2882 3088 5.305139 ACATTTCGTATTACCACCTTTGC 57.695 39.130 0.00 0.00 0.00 3.68
2888 3094 3.945285 CGTATTACCACCTTTGCTTCCAT 59.055 43.478 0.00 0.00 0.00 3.41
2901 3107 1.680207 GCTTCCATGCTTCAGGAATCC 59.320 52.381 0.00 0.00 42.62 3.01
2954 3160 1.207791 TTCTCCTCAGGCCATCTTCC 58.792 55.000 5.01 0.00 0.00 3.46
2982 3188 1.848652 ACTAGGCTTAGGCGAAGTGA 58.151 50.000 13.94 0.00 39.81 3.41
2990 3196 0.614979 TAGGCGAAGTGAAGGAGGCT 60.615 55.000 0.00 0.00 40.78 4.58
3018 3224 1.868251 GACTACAGCGCCTTCGACG 60.868 63.158 2.29 0.00 38.10 5.12
3023 3229 3.986006 AGCGCCTTCGACGGTCAA 61.986 61.111 9.98 1.39 36.32 3.18
3246 3460 2.101783 TGGCTGTGGCATCCTTTATTG 58.898 47.619 0.00 0.00 40.87 1.90
3317 3531 2.428530 CCACGGACTGATGAGATCTGAA 59.571 50.000 0.00 0.00 33.12 3.02
3394 3617 2.118313 CATCCATTGCTCACTGGTCA 57.882 50.000 6.22 0.00 33.37 4.02
3406 3629 0.612229 ACTGGTCAGTGATCAGCAGG 59.388 55.000 29.48 10.69 43.91 4.85
3502 3725 5.662456 GCTAGCTAGCTGGTTACTTAAAGT 58.338 41.667 33.71 0.00 45.62 2.66
3521 3744 4.332637 GCAAGGCTGGTGTGCACG 62.333 66.667 13.13 0.00 38.19 5.34
3536 3759 0.532573 GCACGATGAGAGGAGGAACA 59.467 55.000 0.00 0.00 0.00 3.18
3654 3877 3.476419 CGACCGGTATGGGGGCTT 61.476 66.667 7.34 0.00 44.64 4.35
3669 3892 4.451150 CTTGCCGTCGCTGCCCTA 62.451 66.667 0.00 0.00 35.36 3.53
3724 3947 2.978824 GTCCTAGGCTGTTCCGCA 59.021 61.111 2.96 0.00 40.77 5.69
3792 4015 2.187163 GAGAAGGGCGCAGGTACC 59.813 66.667 10.83 2.73 0.00 3.34
3793 4016 2.284699 AGAAGGGCGCAGGTACCT 60.285 61.111 9.21 9.21 35.78 3.08
3794 4017 2.187163 GAAGGGCGCAGGTACCTC 59.813 66.667 12.84 6.37 32.29 3.85
3795 4018 3.718210 GAAGGGCGCAGGTACCTCG 62.718 68.421 21.99 21.99 32.29 4.63
3800 4023 3.193757 CGCAGGTACCTCGCACTA 58.806 61.111 25.89 0.00 0.00 2.74
3802 4025 0.949397 CGCAGGTACCTCGCACTATA 59.051 55.000 25.89 0.00 0.00 1.31
3803 4026 1.334779 CGCAGGTACCTCGCACTATAC 60.335 57.143 25.89 5.27 0.00 1.47
3839 4062 2.199208 TCCTTCCAGCCATTCATCTGA 58.801 47.619 0.00 0.00 32.26 3.27
3840 4063 2.172082 TCCTTCCAGCCATTCATCTGAG 59.828 50.000 0.00 0.00 32.26 3.35
3841 4064 2.092538 CCTTCCAGCCATTCATCTGAGT 60.093 50.000 0.00 0.00 32.26 3.41
3843 4066 4.384537 CCTTCCAGCCATTCATCTGAGTTA 60.385 45.833 0.00 0.00 32.26 2.24
3845 4068 5.378230 TCCAGCCATTCATCTGAGTTAAT 57.622 39.130 0.00 0.00 32.26 1.40
3848 4071 6.095860 TCCAGCCATTCATCTGAGTTAATTTG 59.904 38.462 0.00 0.00 32.26 2.32
3850 4073 5.954150 AGCCATTCATCTGAGTTAATTTGGT 59.046 36.000 0.00 0.00 0.00 3.67
3852 4075 7.038799 AGCCATTCATCTGAGTTAATTTGGTTT 60.039 33.333 0.00 0.00 0.00 3.27
3972 4197 5.018809 ACCATACCATCCATCAATTATGCC 58.981 41.667 0.00 0.00 33.92 4.40
3991 4219 5.212532 TGCCATAACATTGCTCTGTTTTT 57.787 34.783 9.27 0.00 39.88 1.94
3992 4220 5.229423 TGCCATAACATTGCTCTGTTTTTC 58.771 37.500 9.27 0.50 39.88 2.29
3993 4221 5.010922 TGCCATAACATTGCTCTGTTTTTCT 59.989 36.000 9.27 0.00 39.88 2.52
3994 4222 5.346822 GCCATAACATTGCTCTGTTTTTCTG 59.653 40.000 9.27 4.26 39.88 3.02
4048 4280 6.024552 AGCCGCCACCAAAAATATATATTG 57.975 37.500 8.74 0.00 0.00 1.90
4112 4344 0.175989 CCCGGCTCCTAACTTCTGTC 59.824 60.000 0.00 0.00 0.00 3.51
4157 4389 7.447238 CCCTGTGTCACCTTTTTCTTTTCTATA 59.553 37.037 0.00 0.00 0.00 1.31
4196 4428 0.403271 AGCAAGTGGACTCAAGGCAT 59.597 50.000 0.00 0.00 0.00 4.40
4203 4435 1.188863 GGACTCAAGGCATGGCAAAT 58.811 50.000 22.64 4.12 0.00 2.32
4204 4436 2.291475 TGGACTCAAGGCATGGCAAATA 60.291 45.455 22.64 2.81 0.00 1.40
4205 4437 2.360165 GGACTCAAGGCATGGCAAATAG 59.640 50.000 22.64 14.48 0.00 1.73
4206 4438 2.360165 GACTCAAGGCATGGCAAATAGG 59.640 50.000 22.64 8.50 0.00 2.57
4207 4439 2.025037 ACTCAAGGCATGGCAAATAGGA 60.025 45.455 22.64 8.00 0.00 2.94
4208 4440 2.621998 CTCAAGGCATGGCAAATAGGAG 59.378 50.000 22.64 13.34 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.072330 TCCTGTCACCTTGTCATGCTAAA 59.928 43.478 0.00 0.00 0.00 1.85
1 2 2.637382 TCCTGTCACCTTGTCATGCTAA 59.363 45.455 0.00 0.00 0.00 3.09
2 3 2.256306 TCCTGTCACCTTGTCATGCTA 58.744 47.619 0.00 0.00 0.00 3.49
3 4 1.059098 TCCTGTCACCTTGTCATGCT 58.941 50.000 0.00 0.00 0.00 3.79
4 5 1.741706 CATCCTGTCACCTTGTCATGC 59.258 52.381 0.00 0.00 0.00 4.06
5 6 3.268330 CTCATCCTGTCACCTTGTCATG 58.732 50.000 0.00 0.00 0.00 3.07
6 7 2.238144 CCTCATCCTGTCACCTTGTCAT 59.762 50.000 0.00 0.00 0.00 3.06
7 8 1.625315 CCTCATCCTGTCACCTTGTCA 59.375 52.381 0.00 0.00 0.00 3.58
8 9 1.065854 CCCTCATCCTGTCACCTTGTC 60.066 57.143 0.00 0.00 0.00 3.18
9 10 0.987294 CCCTCATCCTGTCACCTTGT 59.013 55.000 0.00 0.00 0.00 3.16
10 11 0.254178 CCCCTCATCCTGTCACCTTG 59.746 60.000 0.00 0.00 0.00 3.61
11 12 0.178861 ACCCCTCATCCTGTCACCTT 60.179 55.000 0.00 0.00 0.00 3.50
12 13 0.716591 TACCCCTCATCCTGTCACCT 59.283 55.000 0.00 0.00 0.00 4.00
13 14 1.580059 TTACCCCTCATCCTGTCACC 58.420 55.000 0.00 0.00 0.00 4.02
14 15 3.199946 TGAATTACCCCTCATCCTGTCAC 59.800 47.826 0.00 0.00 0.00 3.67
15 16 3.459828 TGAATTACCCCTCATCCTGTCA 58.540 45.455 0.00 0.00 0.00 3.58
16 17 4.713792 ATGAATTACCCCTCATCCTGTC 57.286 45.455 0.00 0.00 0.00 3.51
17 18 4.728860 AGAATGAATTACCCCTCATCCTGT 59.271 41.667 0.00 0.00 30.97 4.00
18 19 5.316158 AGAATGAATTACCCCTCATCCTG 57.684 43.478 0.00 0.00 30.97 3.86
19 20 7.129504 AGTTAAGAATGAATTACCCCTCATCCT 59.870 37.037 0.00 0.00 30.97 3.24
20 21 7.290813 AGTTAAGAATGAATTACCCCTCATCC 58.709 38.462 0.00 0.00 30.97 3.51
21 22 9.847224 TTAGTTAAGAATGAATTACCCCTCATC 57.153 33.333 0.00 0.00 30.97 2.92
22 23 9.853177 CTTAGTTAAGAATGAATTACCCCTCAT 57.147 33.333 0.00 0.00 35.33 2.90
23 24 8.272173 CCTTAGTTAAGAATGAATTACCCCTCA 58.728 37.037 0.51 0.00 35.33 3.86
24 25 8.491958 TCCTTAGTTAAGAATGAATTACCCCTC 58.508 37.037 0.51 0.00 35.33 4.30
25 26 8.401955 TCCTTAGTTAAGAATGAATTACCCCT 57.598 34.615 0.51 0.00 35.33 4.79
26 27 9.642343 AATCCTTAGTTAAGAATGAATTACCCC 57.358 33.333 0.51 0.00 35.33 4.95
35 36 9.294030 GCACAATCAAATCCTTAGTTAAGAATG 57.706 33.333 0.51 0.00 35.33 2.67
36 37 8.470002 GGCACAATCAAATCCTTAGTTAAGAAT 58.530 33.333 0.51 0.00 35.33 2.40
37 38 7.450014 TGGCACAATCAAATCCTTAGTTAAGAA 59.550 33.333 0.51 0.00 32.39 2.52
38 39 6.945435 TGGCACAATCAAATCCTTAGTTAAGA 59.055 34.615 0.51 0.00 32.39 2.10
39 40 7.029563 GTGGCACAATCAAATCCTTAGTTAAG 58.970 38.462 13.86 0.00 44.16 1.85
40 41 6.348950 CGTGGCACAATCAAATCCTTAGTTAA 60.349 38.462 19.09 0.00 44.16 2.01
41 42 5.123186 CGTGGCACAATCAAATCCTTAGTTA 59.877 40.000 19.09 0.00 44.16 2.24
42 43 4.082787 CGTGGCACAATCAAATCCTTAGTT 60.083 41.667 19.09 0.00 44.16 2.24
43 44 3.440173 CGTGGCACAATCAAATCCTTAGT 59.560 43.478 19.09 0.00 44.16 2.24
44 45 3.440173 ACGTGGCACAATCAAATCCTTAG 59.560 43.478 19.09 0.00 44.16 2.18
45 46 3.417101 ACGTGGCACAATCAAATCCTTA 58.583 40.909 19.09 0.00 44.16 2.69
46 47 2.238521 ACGTGGCACAATCAAATCCTT 58.761 42.857 19.09 0.00 44.16 3.36
47 48 1.909700 ACGTGGCACAATCAAATCCT 58.090 45.000 19.09 0.00 44.16 3.24
48 49 2.097466 CCTACGTGGCACAATCAAATCC 59.903 50.000 19.09 0.00 44.16 3.01
49 50 3.405170 CCTACGTGGCACAATCAAATC 57.595 47.619 19.09 0.00 44.16 2.17
65 66 4.770874 TTTGGGAGCGCCGCCTAC 62.771 66.667 4.98 0.00 33.83 3.18
66 67 2.830186 ATTTTTGGGAGCGCCGCCTA 62.830 55.000 4.98 7.80 33.83 3.93
67 68 4.966787 TTTTTGGGAGCGCCGCCT 62.967 61.111 4.98 0.00 33.83 5.52
68 69 3.758931 ATTTTTGGGAGCGCCGCC 61.759 61.111 4.98 5.97 33.83 6.13
69 70 2.506881 CATTTTTGGGAGCGCCGC 60.507 61.111 2.29 0.00 33.83 6.53
70 71 1.309499 TACCATTTTTGGGAGCGCCG 61.309 55.000 2.29 0.00 33.83 6.46
71 72 0.892063 TTACCATTTTTGGGAGCGCC 59.108 50.000 2.29 0.00 0.00 6.53
72 73 1.735700 GCTTACCATTTTTGGGAGCGC 60.736 52.381 0.00 0.00 34.35 5.92
73 74 1.543802 TGCTTACCATTTTTGGGAGCG 59.456 47.619 14.04 0.00 41.81 5.03
83 84 2.440409 CCAGCTCACTTGCTTACCATT 58.560 47.619 0.00 0.00 41.98 3.16
115 116 2.583441 GGGTTCCAAAAGGCCCAGC 61.583 63.158 0.00 0.00 40.76 4.85
138 139 0.466739 TATCTGCTGCAATGGGCCTG 60.467 55.000 4.53 0.00 43.89 4.85
150 151 0.034059 CGAGGCCGGAAATATCTGCT 59.966 55.000 5.05 0.00 0.00 4.24
168 186 3.642008 GACGACGACGACTGGACCG 62.642 68.421 15.32 0.00 42.66 4.79
191 209 3.721706 GCACTGTGGGAGGAGGGG 61.722 72.222 10.21 0.00 0.00 4.79
195 213 2.803155 GAATGCGCACTGTGGGAGGA 62.803 60.000 26.49 10.84 31.21 3.71
197 215 2.401766 GGAATGCGCACTGTGGGAG 61.402 63.158 26.49 0.00 31.21 4.30
198 216 2.359850 GGAATGCGCACTGTGGGA 60.360 61.111 26.49 12.94 31.21 4.37
199 217 3.443045 GGGAATGCGCACTGTGGG 61.443 66.667 14.90 19.28 0.00 4.61
200 218 1.597797 AATGGGAATGCGCACTGTGG 61.598 55.000 14.90 1.00 39.97 4.17
201 219 0.179156 GAATGGGAATGCGCACTGTG 60.179 55.000 14.90 2.76 39.97 3.66
202 220 1.315257 GGAATGGGAATGCGCACTGT 61.315 55.000 14.90 0.00 39.97 3.55
203 221 1.314534 TGGAATGGGAATGCGCACTG 61.315 55.000 14.90 0.00 39.97 3.66
204 222 0.396139 ATGGAATGGGAATGCGCACT 60.396 50.000 14.90 0.00 39.97 4.40
205 223 0.031178 GATGGAATGGGAATGCGCAC 59.969 55.000 14.90 0.00 39.97 5.34
206 224 1.108727 GGATGGAATGGGAATGCGCA 61.109 55.000 14.96 14.96 41.50 6.09
253 271 1.880675 GCGAGATCTGGATAGACGGAA 59.119 52.381 9.17 0.00 35.34 4.30
257 277 1.198178 GTCGGCGAGATCTGGATAGAC 59.802 57.143 11.20 9.80 35.34 2.59
260 280 1.853114 GCGTCGGCGAGATCTGGATA 61.853 60.000 16.53 0.00 41.33 2.59
291 311 2.766229 GGAGGTGGAGGAGGAGGC 60.766 72.222 0.00 0.00 0.00 4.70
293 313 2.041405 GGGGAGGTGGAGGAGGAG 60.041 72.222 0.00 0.00 0.00 3.69
388 408 1.378778 CGAACGAGGAGGAGGAGGT 60.379 63.158 0.00 0.00 0.00 3.85
477 497 0.179012 GTAGAGGAGGGGAGACGAGG 60.179 65.000 0.00 0.00 0.00 4.63
478 498 0.533308 CGTAGAGGAGGGGAGACGAG 60.533 65.000 0.00 0.00 32.20 4.18
479 499 1.270414 ACGTAGAGGAGGGGAGACGA 61.270 60.000 0.00 0.00 34.54 4.20
480 500 1.096386 CACGTAGAGGAGGGGAGACG 61.096 65.000 0.00 0.00 36.42 4.18
481 501 1.385756 GCACGTAGAGGAGGGGAGAC 61.386 65.000 0.00 0.00 0.00 3.36
482 502 1.076923 GCACGTAGAGGAGGGGAGA 60.077 63.158 0.00 0.00 0.00 3.71
483 503 2.128507 GGCACGTAGAGGAGGGGAG 61.129 68.421 0.00 0.00 0.00 4.30
484 504 2.043248 GGCACGTAGAGGAGGGGA 60.043 66.667 0.00 0.00 0.00 4.81
517 537 2.443016 CGAGTGAGGGAGAGGGGG 60.443 72.222 0.00 0.00 0.00 5.40
550 570 2.438434 AGAAATGCCGCGGAAGGG 60.438 61.111 33.48 0.95 44.67 3.95
551 571 2.813179 CGAGAAATGCCGCGGAAGG 61.813 63.158 33.48 1.43 0.00 3.46
552 572 1.809619 TCGAGAAATGCCGCGGAAG 60.810 57.895 33.48 5.12 0.00 3.46
553 573 2.098233 GTCGAGAAATGCCGCGGAA 61.098 57.895 33.48 22.91 0.00 4.30
554 574 2.508439 GTCGAGAAATGCCGCGGA 60.508 61.111 33.48 15.19 0.00 5.54
557 577 2.750888 GGTGGTCGAGAAATGCCGC 61.751 63.158 0.00 0.00 0.00 6.53
572 592 2.108514 AACGGATGCGCAGATGGTG 61.109 57.895 18.32 4.74 0.00 4.17
575 595 0.234106 GATCAACGGATGCGCAGATG 59.766 55.000 18.32 10.26 32.67 2.90
576 596 1.217585 CGATCAACGGATGCGCAGAT 61.218 55.000 18.32 12.03 38.46 2.90
577 597 1.878069 CGATCAACGGATGCGCAGA 60.878 57.895 18.32 6.75 38.46 4.26
578 598 2.622629 CGATCAACGGATGCGCAG 59.377 61.111 18.32 4.62 38.46 5.18
596 655 4.394712 CTGGGTGGGGTCAGTCGC 62.395 72.222 0.00 0.00 0.00 5.19
600 659 2.930019 TGAGCTGGGTGGGGTCAG 60.930 66.667 0.00 0.00 36.48 3.51
603 662 4.990910 AGCTGAGCTGGGTGGGGT 62.991 66.667 5.97 0.00 37.57 4.95
604 663 4.106925 GAGCTGAGCTGGGTGGGG 62.107 72.222 13.71 0.00 39.88 4.96
605 664 3.324930 TGAGCTGAGCTGGGTGGG 61.325 66.667 13.71 0.00 39.88 4.61
617 676 1.577736 ATTACCTGAGGTGCTGAGCT 58.422 50.000 15.83 0.00 36.19 4.09
618 677 2.409948 AATTACCTGAGGTGCTGAGC 57.590 50.000 15.83 0.00 36.19 4.26
626 685 4.469945 TCCCTGTCTGTTAATTACCTGAGG 59.530 45.833 0.00 0.00 0.00 3.86
635 694 2.420129 GGCACGATCCCTGTCTGTTAAT 60.420 50.000 0.00 0.00 0.00 1.40
638 697 1.296715 GGCACGATCCCTGTCTGTT 59.703 57.895 0.00 0.00 0.00 3.16
682 741 1.377725 AAACAGGGCAGGATCGCAG 60.378 57.895 0.00 0.00 0.00 5.18
720 779 1.815421 GGCCAGCTCACCGTATGTG 60.815 63.158 0.00 0.00 46.88 3.21
721 780 2.290287 TGGCCAGCTCACCGTATGT 61.290 57.895 0.00 0.00 0.00 2.29
722 781 1.815421 GTGGCCAGCTCACCGTATG 60.815 63.158 5.11 0.00 0.00 2.39
724 783 4.063967 CGTGGCCAGCTCACCGTA 62.064 66.667 5.11 0.00 0.00 4.02
726 785 2.960957 CTATCGTGGCCAGCTCACCG 62.961 65.000 5.11 4.97 0.00 4.94
727 786 1.227380 CTATCGTGGCCAGCTCACC 60.227 63.158 5.11 0.00 0.00 4.02
728 787 0.528684 GACTATCGTGGCCAGCTCAC 60.529 60.000 5.11 0.00 0.00 3.51
734 793 1.754803 CTACTTGGACTATCGTGGCCA 59.245 52.381 0.00 0.00 0.00 5.36
744 803 5.364157 ACTTTGTGAACTCTCTACTTGGACT 59.636 40.000 0.00 0.00 0.00 3.85
751 830 6.869388 CCCTTTCTACTTTGTGAACTCTCTAC 59.131 42.308 0.00 0.00 0.00 2.59
770 849 2.618709 GTGCTGTATATGCCACCCTTTC 59.381 50.000 0.00 0.00 0.00 2.62
774 853 1.417890 AGAGTGCTGTATATGCCACCC 59.582 52.381 0.00 0.00 0.00 4.61
777 856 3.742327 GCAGAAGAGTGCTGTATATGCCA 60.742 47.826 0.00 0.00 40.54 4.92
778 857 2.805099 GCAGAAGAGTGCTGTATATGCC 59.195 50.000 0.00 0.00 40.54 4.40
779 858 3.247173 GTGCAGAAGAGTGCTGTATATGC 59.753 47.826 0.00 0.00 44.32 3.14
780 859 3.488678 CGTGCAGAAGAGTGCTGTATATG 59.511 47.826 0.00 0.00 44.32 1.78
781 860 3.491619 CCGTGCAGAAGAGTGCTGTATAT 60.492 47.826 0.00 0.00 44.32 0.86
782 861 2.159240 CCGTGCAGAAGAGTGCTGTATA 60.159 50.000 0.00 0.00 44.32 1.47
783 862 1.404717 CCGTGCAGAAGAGTGCTGTAT 60.405 52.381 0.00 0.00 44.32 2.29
784 863 0.038251 CCGTGCAGAAGAGTGCTGTA 60.038 55.000 0.00 0.00 44.32 2.74
787 866 2.358003 GCCGTGCAGAAGAGTGCT 60.358 61.111 0.00 0.00 44.32 4.40
789 868 0.877071 AAATGCCGTGCAGAAGAGTG 59.123 50.000 4.90 0.00 43.65 3.51
800 898 2.999507 TCAAATGCGTAAAATGCCGT 57.000 40.000 0.00 0.00 0.00 5.68
802 900 5.727592 CGAAAAATCAAATGCGTAAAATGCC 59.272 36.000 0.00 0.00 0.00 4.40
806 904 4.150804 GCCCGAAAAATCAAATGCGTAAAA 59.849 37.500 0.00 0.00 0.00 1.52
807 905 3.675698 GCCCGAAAAATCAAATGCGTAAA 59.324 39.130 0.00 0.00 0.00 2.01
808 906 3.057174 AGCCCGAAAAATCAAATGCGTAA 60.057 39.130 0.00 0.00 0.00 3.18
811 909 1.994916 AGCCCGAAAAATCAAATGCG 58.005 45.000 0.00 0.00 0.00 4.73
812 910 3.859386 CACTAGCCCGAAAAATCAAATGC 59.141 43.478 0.00 0.00 0.00 3.56
813 911 4.858692 CACACTAGCCCGAAAAATCAAATG 59.141 41.667 0.00 0.00 0.00 2.32
814 912 4.082245 CCACACTAGCCCGAAAAATCAAAT 60.082 41.667 0.00 0.00 0.00 2.32
815 913 3.254657 CCACACTAGCCCGAAAAATCAAA 59.745 43.478 0.00 0.00 0.00 2.69
817 915 2.432444 CCACACTAGCCCGAAAAATCA 58.568 47.619 0.00 0.00 0.00 2.57
818 916 1.743394 CCCACACTAGCCCGAAAAATC 59.257 52.381 0.00 0.00 0.00 2.17
819 917 1.615919 CCCCACACTAGCCCGAAAAAT 60.616 52.381 0.00 0.00 0.00 1.82
821 919 1.377229 CCCCACACTAGCCCGAAAA 59.623 57.895 0.00 0.00 0.00 2.29
822 920 1.833787 GACCCCACACTAGCCCGAAA 61.834 60.000 0.00 0.00 0.00 3.46
823 921 2.203877 ACCCCACACTAGCCCGAA 60.204 61.111 0.00 0.00 0.00 4.30
824 922 2.682494 GACCCCACACTAGCCCGA 60.682 66.667 0.00 0.00 0.00 5.14
825 923 2.683933 AGACCCCACACTAGCCCG 60.684 66.667 0.00 0.00 0.00 6.13
827 925 0.537653 GAAGAGACCCCACACTAGCC 59.462 60.000 0.00 0.00 0.00 3.93
829 927 1.827969 CAGGAAGAGACCCCACACTAG 59.172 57.143 0.00 0.00 0.00 2.57
831 929 0.104934 ACAGGAAGAGACCCCACACT 60.105 55.000 0.00 0.00 0.00 3.55
832 930 0.765510 AACAGGAAGAGACCCCACAC 59.234 55.000 0.00 0.00 0.00 3.82
834 932 2.028020 CACTAACAGGAAGAGACCCCAC 60.028 54.545 0.00 0.00 0.00 4.61
836 934 1.066071 GCACTAACAGGAAGAGACCCC 60.066 57.143 0.00 0.00 0.00 4.95
837 935 1.623811 TGCACTAACAGGAAGAGACCC 59.376 52.381 0.00 0.00 0.00 4.46
838 936 3.067833 GTTGCACTAACAGGAAGAGACC 58.932 50.000 0.00 0.00 39.16 3.85
839 937 3.728845 TGTTGCACTAACAGGAAGAGAC 58.271 45.455 0.00 0.00 44.07 3.36
849 947 0.313987 GGGCCACTTGTTGCACTAAC 59.686 55.000 4.39 0.00 39.80 2.34
850 948 0.825840 GGGGCCACTTGTTGCACTAA 60.826 55.000 4.39 0.00 0.00 2.24
851 949 1.228429 GGGGCCACTTGTTGCACTA 60.228 57.895 4.39 0.00 0.00 2.74
852 950 2.521708 GGGGCCACTTGTTGCACT 60.522 61.111 4.39 0.00 0.00 4.40
853 951 3.615709 GGGGGCCACTTGTTGCAC 61.616 66.667 4.16 0.00 0.00 4.57
864 962 2.044551 CTCTTGCTCTTGGGGGCC 60.045 66.667 0.00 0.00 0.00 5.80
865 963 1.676967 CACTCTTGCTCTTGGGGGC 60.677 63.158 0.00 0.00 0.00 5.80
867 965 0.035630 CTCCACTCTTGCTCTTGGGG 60.036 60.000 0.00 0.00 0.00 4.96
871 969 1.722034 TCCACTCCACTCTTGCTCTT 58.278 50.000 0.00 0.00 0.00 2.85
883 981 4.965200 AATGCCTCTACTAATCCACTCC 57.035 45.455 0.00 0.00 0.00 3.85
890 988 4.941263 TGCGTGAAAAATGCCTCTACTAAT 59.059 37.500 0.00 0.00 40.37 1.73
894 992 3.764885 ATGCGTGAAAAATGCCTCTAC 57.235 42.857 0.00 0.00 40.37 2.59
903 1001 7.329717 AGCGGATAAAATAAAATGCGTGAAAAA 59.670 29.630 0.00 0.00 38.91 1.94
904 1002 6.809196 AGCGGATAAAATAAAATGCGTGAAAA 59.191 30.769 0.00 0.00 38.91 2.29
911 1009 6.144577 GCATCAGCGGATAAAATAAAATGC 57.855 37.500 0.00 0.00 30.87 3.56
933 1031 2.052157 GATCGAGTACATAGCAACCGC 58.948 52.381 0.00 0.00 38.99 5.68
934 1032 3.243101 ACAGATCGAGTACATAGCAACCG 60.243 47.826 0.00 0.00 0.00 4.44
949 1085 6.419116 ATGAATCACATTAGTCGAACAGATCG 59.581 38.462 0.00 0.00 43.93 3.69
959 1095 7.972277 AGTTTTGCATGATGAATCACATTAGTC 59.028 33.333 0.00 0.00 40.03 2.59
963 1099 5.803461 CGAGTTTTGCATGATGAATCACATT 59.197 36.000 0.00 0.00 40.03 2.71
993 1129 4.217550 TGCCAAGCAAGGTTTACTTCATAC 59.782 41.667 0.00 0.00 37.29 2.39
1031 1167 1.204704 CAGCGACAGGTCAGATTACCA 59.795 52.381 0.00 0.00 42.40 3.25
1041 1177 4.008933 GAGGTGCCAGCGACAGGT 62.009 66.667 0.00 0.00 0.00 4.00
1071 1207 4.837860 TGGTTAAAACATTTGAGGGCTCAT 59.162 37.500 0.00 0.00 39.64 2.90
1075 1211 4.329462 TGTGGTTAAAACATTTGAGGGC 57.671 40.909 0.00 0.00 0.00 5.19
1088 1224 9.675464 ACGGAGATATATTTTTCTTGTGGTTAA 57.325 29.630 0.00 0.00 0.00 2.01
1105 1241 2.427453 GTGTGACTGTGGACGGAGATAT 59.573 50.000 0.00 0.00 0.00 1.63
1109 1245 0.318441 ATGTGTGACTGTGGACGGAG 59.682 55.000 0.00 0.00 0.00 4.63
1127 1263 8.788806 TCGACAAAGTTTATGGTTATCACAAAT 58.211 29.630 0.00 0.00 0.00 2.32
1130 1266 7.915293 ATCGACAAAGTTTATGGTTATCACA 57.085 32.000 0.00 0.00 0.00 3.58
1149 1285 8.352752 TGTGAAACTACATATCATCAATCGAC 57.647 34.615 0.00 0.00 38.04 4.20
1150 1286 8.413229 TCTGTGAAACTACATATCATCAATCGA 58.587 33.333 0.00 0.00 38.04 3.59
1151 1287 8.579682 TCTGTGAAACTACATATCATCAATCG 57.420 34.615 0.00 0.00 38.04 3.34
1155 1291 9.671279 ACAAATCTGTGAAACTACATATCATCA 57.329 29.630 0.00 0.00 38.04 3.07
1161 1297 9.093970 CGGATAACAAATCTGTGAAACTACATA 57.906 33.333 0.00 0.00 38.04 2.29
1162 1298 7.414098 GCGGATAACAAATCTGTGAAACTACAT 60.414 37.037 0.00 0.00 38.04 2.29
1163 1299 6.128391 GCGGATAACAAATCTGTGAAACTACA 60.128 38.462 0.00 0.00 38.04 2.74
1164 1300 6.092259 AGCGGATAACAAATCTGTGAAACTAC 59.908 38.462 0.00 0.00 38.04 2.73
1165 1301 6.092122 CAGCGGATAACAAATCTGTGAAACTA 59.908 38.462 0.00 0.00 38.04 2.24
1166 1302 5.003804 AGCGGATAACAAATCTGTGAAACT 58.996 37.500 0.00 0.00 38.04 2.66
1167 1303 5.088739 CAGCGGATAACAAATCTGTGAAAC 58.911 41.667 0.00 0.00 35.37 2.78
1168 1304 5.000591 TCAGCGGATAACAAATCTGTGAAA 58.999 37.500 0.00 0.00 35.37 2.69
1184 1320 1.051008 ACAGCCATCATATCAGCGGA 58.949 50.000 0.00 0.00 0.00 5.54
1187 1323 9.918630 AAATTAAATAACAGCCATCATATCAGC 57.081 29.630 0.00 0.00 0.00 4.26
1198 1334 7.707774 ACACAACACAAATTAAATAACAGCC 57.292 32.000 0.00 0.00 0.00 4.85
1228 1364 2.104622 TCCACTGTCAGTCTCAAATGCA 59.895 45.455 1.37 0.00 0.00 3.96
1230 1366 2.740981 GCTCCACTGTCAGTCTCAAATG 59.259 50.000 1.37 0.00 0.00 2.32
1237 1373 1.023513 GCCATGCTCCACTGTCAGTC 61.024 60.000 1.37 0.00 0.00 3.51
1238 1374 1.002868 GCCATGCTCCACTGTCAGT 60.003 57.895 0.00 0.00 0.00 3.41
1240 1376 1.002990 CAGCCATGCTCCACTGTCA 60.003 57.895 0.00 0.00 36.40 3.58
1256 1393 6.266558 AGGACAGACAGAATAGGTATTAGCAG 59.733 42.308 0.00 0.00 0.00 4.24
1265 1402 5.350504 ACATCAAGGACAGACAGAATAGG 57.649 43.478 0.00 0.00 0.00 2.57
1268 1405 4.679106 CGCTACATCAAGGACAGACAGAAT 60.679 45.833 0.00 0.00 0.00 2.40
1289 1426 3.293262 TCGTTGAACAAATTAAGTGCGC 58.707 40.909 0.00 0.00 0.00 6.09
1290 1427 5.623264 TCATTCGTTGAACAAATTAAGTGCG 59.377 36.000 0.00 0.00 0.00 5.34
1292 1429 8.955061 ATCTCATTCGTTGAACAAATTAAGTG 57.045 30.769 0.00 0.00 32.78 3.16
1309 1446 5.408356 AGTTTTGCATGCTGAATCTCATTC 58.592 37.500 20.33 0.42 39.70 2.67
1326 1463 8.223100 GCTAAATTCATAACCAAGCAAGTTTTG 58.777 33.333 0.00 0.00 0.00 2.44
1327 1464 7.387673 GGCTAAATTCATAACCAAGCAAGTTTT 59.612 33.333 0.00 0.00 0.00 2.43
1335 1475 7.331687 CCAAACAAGGCTAAATTCATAACCAAG 59.668 37.037 0.00 0.00 0.00 3.61
1357 1497 2.393271 CCAACTTGTTGGTTGCCAAA 57.607 45.000 20.87 0.00 45.73 3.28
1381 1521 0.460109 GCCAATGGCCGGTCAAATTC 60.460 55.000 15.45 0.00 44.06 2.17
1396 1536 1.032014 GAAGCAACAGGAAGTGCCAA 58.968 50.000 0.00 0.00 40.02 4.52
1406 1546 4.761739 TCAAAGGGTCATAAGAAGCAACAG 59.238 41.667 0.00 0.00 0.00 3.16
1407 1547 4.724399 TCAAAGGGTCATAAGAAGCAACA 58.276 39.130 0.00 0.00 0.00 3.33
1452 1592 0.333652 TGACGGTGGACAGGGATCTA 59.666 55.000 0.00 0.00 0.00 1.98
1474 1645 7.512130 TCATAAAGTTATGGTCATCAGCAGAT 58.488 34.615 10.41 0.00 40.64 2.90
1491 1662 9.965902 AAACTAGAGACCATCAATTCATAAAGT 57.034 29.630 0.00 0.00 0.00 2.66
1498 1674 7.712639 TGCATAGAAACTAGAGACCATCAATTC 59.287 37.037 0.00 0.00 0.00 2.17
1499 1675 7.497249 GTGCATAGAAACTAGAGACCATCAATT 59.503 37.037 0.00 0.00 0.00 2.32
1511 1688 3.786635 AGCGGAAGTGCATAGAAACTAG 58.213 45.455 0.00 0.00 37.31 2.57
1525 1702 5.140747 AGGCAGTTAGATATTAGCGGAAG 57.859 43.478 0.00 0.00 0.00 3.46
1605 1782 2.512515 GCACCGTGAGCCTCCATC 60.513 66.667 1.65 0.00 0.00 3.51
1613 1790 0.172352 GAGAGAAGAGGCACCGTGAG 59.828 60.000 1.65 0.00 0.00 3.51
1630 1807 2.414994 ACCATGTCATCCTTGCAGAG 57.585 50.000 0.00 0.00 0.00 3.35
1677 1854 0.474660 AAGAACCTGGAGTCTGCCCT 60.475 55.000 0.00 0.00 0.00 5.19
1763 1940 6.183361 GGGAGAACCTGAGATATCAACTTCAT 60.183 42.308 5.32 0.00 35.85 2.57
1775 1952 0.115152 TGAGCTGGGAGAACCTGAGA 59.885 55.000 0.00 0.00 40.42 3.27
1832 2009 1.662629 CACTGTGATCGGAGATTGCAC 59.337 52.381 0.32 0.00 45.12 4.57
1843 2020 1.069227 GGCGTTTGGTTCACTGTGATC 60.069 52.381 11.86 10.70 0.00 2.92
1860 2037 1.590238 CGCTCATAAGTTGAAGAGGCG 59.410 52.381 0.00 0.00 38.43 5.52
1981 2166 1.213926 GATCTCAAGCACCCATTCCCT 59.786 52.381 0.00 0.00 0.00 4.20
1987 2172 2.540383 ACACTAGATCTCAAGCACCCA 58.460 47.619 0.00 0.00 0.00 4.51
2044 2229 3.788227 ACAGCAAGAACACCCATCTTA 57.212 42.857 0.00 0.00 35.43 2.10
2054 2239 5.818136 TGCCAAGATATTACAGCAAGAAC 57.182 39.130 0.00 0.00 0.00 3.01
2063 2248 7.113965 CAGCGAAAATCAATGCCAAGATATTAC 59.886 37.037 0.00 0.00 0.00 1.89
2071 2256 1.617850 ACCAGCGAAAATCAATGCCAA 59.382 42.857 0.00 0.00 0.00 4.52
2074 2259 2.634982 TCACCAGCGAAAATCAATGC 57.365 45.000 0.00 0.00 0.00 3.56
2086 2271 3.860536 TGCTAAAAACGTTTTTCACCAGC 59.139 39.130 35.13 33.60 40.53 4.85
2087 2272 6.396459 TTTGCTAAAAACGTTTTTCACCAG 57.604 33.333 35.13 27.61 40.53 4.00
2088 2273 6.969828 ATTTGCTAAAAACGTTTTTCACCA 57.030 29.167 35.13 26.67 40.53 4.17
2100 2285 5.984926 CACTGCCTTCTGAATTTGCTAAAAA 59.015 36.000 0.00 0.00 0.00 1.94
2101 2286 5.509501 CCACTGCCTTCTGAATTTGCTAAAA 60.510 40.000 0.00 0.00 0.00 1.52
2115 2300 3.124636 CACAACGTATTACCACTGCCTTC 59.875 47.826 0.00 0.00 0.00 3.46
2125 2310 3.977536 GTAACACGCCACAACGTATTAC 58.022 45.455 2.97 2.97 45.22 1.89
2131 2316 1.192980 GGTTAGTAACACGCCACAACG 59.807 52.381 14.81 0.00 39.50 4.10
2196 2381 4.631813 CAGTTAGAACTTCCGAATTCCCAG 59.368 45.833 0.00 0.00 37.08 4.45
2232 2417 6.610075 ACTGAAAATTAAATGGCATGGTCT 57.390 33.333 0.00 0.00 0.00 3.85
2289 2474 3.859961 AGACAGCTCGACACAATAATTCG 59.140 43.478 0.00 0.00 0.00 3.34
2373 2565 3.374988 TCCGCACAGTTTCATGATCAATC 59.625 43.478 0.00 0.00 0.00 2.67
2390 2582 1.540363 GGAACAGAACTGAACTCCGCA 60.540 52.381 8.87 0.00 0.00 5.69
2393 2585 3.579151 AGGTAGGAACAGAACTGAACTCC 59.421 47.826 8.87 10.43 0.00 3.85
2460 2652 6.916387 CGATTACAGTACCAACTTATCGTGAT 59.084 38.462 0.00 0.00 35.87 3.06
2474 2666 6.034683 CAGAAAAGCTACCACGATTACAGTAC 59.965 42.308 0.00 0.00 0.00 2.73
2503 2695 8.762426 GTCAGGGAACGATAAAACTGTATTATC 58.238 37.037 0.00 0.00 36.73 1.75
2523 2715 2.836981 AGGAAGAGAATGTGAGTCAGGG 59.163 50.000 0.00 0.00 0.00 4.45
2581 2787 1.153168 GCGGCCTCCTTTCATAGCA 60.153 57.895 0.00 0.00 0.00 3.49
2599 2805 3.626680 TTCACCGCCGCTTCTCTCG 62.627 63.158 0.00 0.00 0.00 4.04
2647 2853 0.034896 CGTATACATCTGGGGCCCAC 59.965 60.000 24.76 14.10 0.00 4.61
2777 2983 2.668212 CTTCTTGCCGTTCCCGCA 60.668 61.111 0.00 0.00 0.00 5.69
2880 3086 2.372264 GATTCCTGAAGCATGGAAGCA 58.628 47.619 5.31 0.00 45.09 3.91
2882 3088 3.294038 AGGATTCCTGAAGCATGGAAG 57.706 47.619 3.86 0.00 44.37 3.46
2901 3107 2.284457 CGTACGATGATTTCACACGCAG 60.284 50.000 10.44 0.00 34.22 5.18
2954 3160 0.384669 CTAAGCCTAGTTCGTCGGGG 59.615 60.000 0.00 0.00 0.00 5.73
2982 3188 2.600729 CCAGCACCTCAGCCTCCTT 61.601 63.158 0.00 0.00 34.23 3.36
3018 3224 2.328099 CGCACTTGGGCTCTTGACC 61.328 63.158 0.00 0.00 43.36 4.02
3023 3229 3.710722 CCTCCGCACTTGGGCTCT 61.711 66.667 0.00 0.00 0.00 4.09
3048 3254 4.829518 CGCGGCGATCTCGTGTGA 62.830 66.667 19.16 0.00 42.22 3.58
3232 3446 6.119536 CACTACTTACCAATAAAGGATGCCA 58.880 40.000 0.00 0.00 0.00 4.92
3233 3447 6.120220 ACACTACTTACCAATAAAGGATGCC 58.880 40.000 0.00 0.00 0.00 4.40
3317 3531 8.899887 TCCCTCAAAAGAGGATTCAATTATTT 57.100 30.769 12.93 0.00 45.00 1.40
3331 3545 1.208052 CTCGGCATCTCCCTCAAAAGA 59.792 52.381 0.00 0.00 0.00 2.52
3388 3611 0.900421 TCCTGCTGATCACTGACCAG 59.100 55.000 0.00 0.00 0.00 4.00
3394 3617 1.221293 GCTGCTCCTGCTGATCACT 59.779 57.895 0.00 0.00 40.01 3.41
3404 3627 2.124653 GCTGATGCTGCTGCTCCT 60.125 61.111 17.00 1.50 40.48 3.69
3431 3654 2.169144 TGATGTGACCTGATACCAGCAG 59.831 50.000 0.00 0.00 39.07 4.24
3502 3725 4.519612 TGCACACCAGCCTTGCCA 62.520 61.111 0.00 0.00 35.26 4.92
3521 3744 3.055530 TGAGCTTTGTTCCTCCTCTCATC 60.056 47.826 0.00 0.00 0.00 2.92
3536 3759 2.165998 GCTCTGGTGGATTTGAGCTTT 58.834 47.619 6.58 0.00 45.78 3.51
3638 3861 2.192175 CAAGCCCCCATACCGGTC 59.808 66.667 12.40 0.00 0.00 4.79
3669 3892 4.266543 AGCAGCAGCACCAGCAGT 62.267 61.111 3.17 0.00 45.49 4.40
3783 4006 0.949397 TATAGTGCGAGGTACCTGCG 59.051 55.000 22.10 22.03 0.00 5.18
3792 4015 9.386010 AGAAACCTAGATATAGTATAGTGCGAG 57.614 37.037 0.00 0.00 0.00 5.03
3793 4016 9.736414 AAGAAACCTAGATATAGTATAGTGCGA 57.264 33.333 0.00 0.00 0.00 5.10
3794 4017 9.991388 GAAGAAACCTAGATATAGTATAGTGCG 57.009 37.037 0.00 0.00 0.00 5.34
3802 4025 7.015779 GCTGGAAGGAAGAAACCTAGATATAGT 59.984 40.741 0.00 0.00 39.62 2.12
3803 4026 7.382898 GCTGGAAGGAAGAAACCTAGATATAG 58.617 42.308 0.00 0.00 39.62 1.31
3839 4062 6.312672 GCACACTGAAACAAACCAAATTAACT 59.687 34.615 0.00 0.00 0.00 2.24
3840 4063 6.474364 GCACACTGAAACAAACCAAATTAAC 58.526 36.000 0.00 0.00 0.00 2.01
3841 4064 5.289675 CGCACACTGAAACAAACCAAATTAA 59.710 36.000 0.00 0.00 0.00 1.40
3843 4066 3.616379 CGCACACTGAAACAAACCAAATT 59.384 39.130 0.00 0.00 0.00 1.82
3845 4068 2.029828 ACGCACACTGAAACAAACCAAA 60.030 40.909 0.00 0.00 0.00 3.28
3848 4071 1.544686 CACGCACACTGAAACAAACC 58.455 50.000 0.00 0.00 0.00 3.27
3850 4073 1.131504 GTCCACGCACACTGAAACAAA 59.868 47.619 0.00 0.00 0.00 2.83
3852 4075 1.425267 CGTCCACGCACACTGAAACA 61.425 55.000 0.00 0.00 0.00 2.83
3972 4197 7.115378 GGAACAGAAAAACAGAGCAATGTTATG 59.885 37.037 6.95 6.86 42.49 1.90
3991 4219 5.560724 CCTAACTCATGAAAAGGGAACAGA 58.439 41.667 0.00 0.00 0.00 3.41
3992 4220 4.156739 GCCTAACTCATGAAAAGGGAACAG 59.843 45.833 15.76 0.00 0.00 3.16
3993 4221 4.079253 GCCTAACTCATGAAAAGGGAACA 58.921 43.478 15.76 0.00 0.00 3.18
3994 4222 4.079253 TGCCTAACTCATGAAAAGGGAAC 58.921 43.478 15.76 4.30 0.00 3.62
4065 4297 7.389232 TCTCTCTATGTCAAAGCAGATTTTGA 58.611 34.615 0.00 0.00 42.93 2.69
4112 4344 2.103538 GGCATGTGCTTGATGGCG 59.896 61.111 4.84 0.00 41.70 5.69
4196 4428 8.902806 CAATTAATCAACTACTCCTATTTGCCA 58.097 33.333 0.00 0.00 0.00 4.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.