Multiple sequence alignment - TraesCS3D01G537500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G537500 chr3D 100.000 4246 0 0 1 4246 610630582 610626337 0.000000e+00 7841.0
1 TraesCS3D01G537500 chr3D 83.987 1224 183 11 2206 3421 610667827 610666609 0.000000e+00 1162.0
2 TraesCS3D01G537500 chr3D 83.407 910 132 9 2516 3421 610685053 610684159 0.000000e+00 826.0
3 TraesCS3D01G537500 chr3D 84.564 745 101 11 3511 4246 610666601 610665862 0.000000e+00 726.0
4 TraesCS3D01G537500 chr3D 86.329 651 71 13 1001 1645 610686293 610685655 0.000000e+00 693.0
5 TraesCS3D01G537500 chr3D 84.146 492 53 17 534 1004 610561563 610561076 1.800000e-123 453.0
6 TraesCS3D01G537500 chr3D 83.138 427 61 10 96 514 610602377 610601954 3.100000e-101 379.0
7 TraesCS3D01G537500 chr3A 86.923 2057 246 18 2199 4246 745080454 745078412 0.000000e+00 2287.0
8 TraesCS3D01G537500 chr3A 86.855 2054 252 14 2199 4246 745193657 745191616 0.000000e+00 2281.0
9 TraesCS3D01G537500 chr3A 86.566 2047 256 15 2199 4239 745013643 745011610 0.000000e+00 2239.0
10 TraesCS3D01G537500 chr3A 84.939 2065 282 18 2199 4246 745298606 745296554 0.000000e+00 2063.0
11 TraesCS3D01G537500 chr3A 87.245 1325 161 7 2199 3520 744940716 744939397 0.000000e+00 1504.0
12 TraesCS3D01G537500 chr3A 86.494 1392 130 39 1 1349 744942747 744941371 0.000000e+00 1476.0
13 TraesCS3D01G537500 chr3A 85.930 1393 138 37 1 1349 745015676 745014298 0.000000e+00 1434.0
14 TraesCS3D01G537500 chr3A 84.809 1389 130 49 1 1349 745082454 745081107 0.000000e+00 1321.0
15 TraesCS3D01G537500 chr3A 84.593 1389 133 51 1 1349 745195657 745194310 0.000000e+00 1304.0
16 TraesCS3D01G537500 chr3A 86.248 509 60 5 1138 1644 745299444 745298944 1.040000e-150 544.0
17 TraesCS3D01G537500 chr3A 83.130 575 80 13 1557 2129 745081002 745080443 3.790000e-140 508.0
18 TraesCS3D01G537500 chr3A 83.130 575 80 13 1557 2129 745194205 745193646 3.790000e-140 508.0
19 TraesCS3D01G537500 chr3A 81.891 497 65 14 531 1004 745062415 745061921 3.080000e-106 396.0
20 TraesCS3D01G537500 chr3A 81.148 366 46 10 1783 2135 745298943 745298588 5.410000e-69 272.0
21 TraesCS3D01G537500 chr3A 93.478 92 5 1 1407 1498 745014283 745014193 7.410000e-28 135.0
22 TraesCS3D01G537500 chr3A 93.478 92 5 1 1407 1498 745081092 745081002 7.410000e-28 135.0
23 TraesCS3D01G537500 chr3A 93.478 92 5 1 1407 1498 745194295 745194205 7.410000e-28 135.0
24 TraesCS3D01G537500 chr3A 87.255 102 11 2 4033 4133 745371309 745371209 9.650000e-22 115.0
25 TraesCS3D01G537500 chr3A 92.308 65 5 0 1003 1067 745299823 745299759 4.520000e-15 93.5
26 TraesCS3D01G537500 chr3B 88.708 1169 126 3 2199 3366 828253959 828252796 0.000000e+00 1423.0
27 TraesCS3D01G537500 chr3B 83.562 1168 170 6 2205 3364 828293136 828291983 0.000000e+00 1074.0
28 TraesCS3D01G537500 chr3B 84.225 748 103 13 3510 4245 828330979 828330235 0.000000e+00 713.0
29 TraesCS3D01G537500 chr3B 84.112 749 106 10 3506 4246 828287159 828286416 0.000000e+00 712.0
30 TraesCS3D01G537500 chr3B 82.254 834 130 5 2203 3030 828332120 828331299 0.000000e+00 704.0
31 TraesCS3D01G537500 chr3B 89.703 505 39 9 510 1004 828256818 828256317 2.150000e-177 632.0
32 TraesCS3D01G537500 chr3B 89.712 486 39 6 1001 1478 828333031 828332549 1.010000e-170 610.0
33 TraesCS3D01G537500 chr3B 90.949 453 31 4 1001 1447 828294037 828293589 6.070000e-168 601.0
34 TraesCS3D01G537500 chr3B 91.404 349 20 4 1001 1349 828256275 828255937 1.790000e-128 470.0
35 TraesCS3D01G537500 chr3B 85.106 470 56 6 547 1002 828333544 828333075 6.430000e-128 468.0
36 TraesCS3D01G537500 chr3B 84.713 471 57 7 546 1002 828294550 828294081 1.390000e-124 457.0
37 TraesCS3D01G537500 chr3B 92.788 208 11 3 306 510 828257188 828256982 8.930000e-77 298.0
38 TraesCS3D01G537500 chr3B 85.714 259 30 3 3169 3421 828331243 828330986 2.520000e-67 267.0
39 TraesCS3D01G537500 chr3B 78.151 357 48 10 1784 2129 828293468 828293131 2.590000e-47 200.0
40 TraesCS3D01G537500 chr3B 79.077 325 42 13 1818 2130 828332419 828332109 2.590000e-47 200.0
41 TraesCS3D01G537500 chr3B 91.000 100 9 0 1547 1646 828332550 828332451 7.410000e-28 135.0
42 TraesCS3D01G537500 chr5B 78.788 99 21 0 3820 3918 64295054 64294956 2.740000e-07 67.6
43 TraesCS3D01G537500 chr2B 76.000 150 22 9 1647 1782 84794987 84795136 9.850000e-07 65.8
44 TraesCS3D01G537500 chr4A 85.484 62 5 4 1652 1709 655470327 655470266 1.270000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G537500 chr3D 610626337 610630582 4245 True 7841.000000 7841 100.000000 1 4246 1 chr3D.!!$R3 4245
1 TraesCS3D01G537500 chr3D 610665862 610667827 1965 True 944.000000 1162 84.275500 2206 4246 2 chr3D.!!$R4 2040
2 TraesCS3D01G537500 chr3D 610684159 610686293 2134 True 759.500000 826 84.868000 1001 3421 2 chr3D.!!$R5 2420
3 TraesCS3D01G537500 chr3A 744939397 744942747 3350 True 1490.000000 1504 86.869500 1 3520 2 chr3A.!!$R3 3519
4 TraesCS3D01G537500 chr3A 745011610 745015676 4066 True 1269.333333 2239 88.658000 1 4239 3 chr3A.!!$R4 4238
5 TraesCS3D01G537500 chr3A 745078412 745082454 4042 True 1062.750000 2287 87.085000 1 4246 4 chr3A.!!$R5 4245
6 TraesCS3D01G537500 chr3A 745191616 745195657 4041 True 1057.000000 2281 87.014000 1 4246 4 chr3A.!!$R6 4245
7 TraesCS3D01G537500 chr3A 745296554 745299823 3269 True 743.125000 2063 86.160750 1003 4246 4 chr3A.!!$R7 3243
8 TraesCS3D01G537500 chr3B 828286416 828287159 743 True 712.000000 712 84.112000 3506 4246 1 chr3B.!!$R1 740
9 TraesCS3D01G537500 chr3B 828252796 828257188 4392 True 705.750000 1423 90.650750 306 3366 4 chr3B.!!$R2 3060
10 TraesCS3D01G537500 chr3B 828291983 828294550 2567 True 583.000000 1074 84.343750 546 3364 4 chr3B.!!$R3 2818
11 TraesCS3D01G537500 chr3B 828330235 828333544 3309 True 442.428571 713 85.298286 547 4245 7 chr3B.!!$R4 3698

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
740 931 0.033504 GCGGGACAGTTGAGAAGTGA 59.966 55.0 0.0 0.0 35.76 3.41 F
1176 1718 0.247460 GCTTGATTTCCCCAACTGCC 59.753 55.0 0.0 0.0 0.00 4.85 F
1511 2885 0.393077 AGACACCCGAGAAACAGTGG 59.607 55.0 0.0 0.0 34.50 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1547 2921 0.035739 GGTACCTCTTGGCCGTTCAA 59.964 55.0 4.06 0.0 36.63 2.69 R
2633 4477 0.742990 CGGTGCCGGTGACATATGTT 60.743 55.0 10.30 0.0 35.56 2.71 R
3285 5139 0.245539 CCAGCATTGCCAAGTTCAGG 59.754 55.0 4.70 0.0 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.636454 TCCTTGACCCTAATCATAACAGTT 57.364 37.500 0.00 0.00 0.00 3.16
38 39 7.283625 TCATAACAGTTTGGTTGCTAACATT 57.716 32.000 0.00 0.00 32.29 2.71
39 40 7.144661 TCATAACAGTTTGGTTGCTAACATTG 58.855 34.615 0.00 0.00 32.29 2.82
43 44 1.610363 TTGGTTGCTAACATTGCGGA 58.390 45.000 0.00 0.00 0.00 5.54
47 55 0.515127 TTGCTAACATTGCGGACACG 59.485 50.000 0.00 0.00 44.63 4.49
58 66 2.100031 CGGACACGCATAGCAAGCA 61.100 57.895 0.00 0.00 0.00 3.91
60 68 0.305922 GGACACGCATAGCAAGCATC 59.694 55.000 0.00 0.00 0.00 3.91
64 72 2.609459 ACACGCATAGCAAGCATCTAAC 59.391 45.455 0.00 0.00 0.00 2.34
103 112 8.907222 AAATTAAGTAGACAAGTTAAACCCGA 57.093 30.769 0.00 0.00 36.73 5.14
112 121 5.623169 ACAAGTTAAACCCGAAGTATTCCA 58.377 37.500 0.00 0.00 43.81 3.53
120 129 5.237236 ACCCGAAGTATTCCAAGAGAAAA 57.763 39.130 0.00 0.00 43.81 2.29
214 225 4.927267 TGAGTTATCCACAGTTTCCCAT 57.073 40.909 0.00 0.00 0.00 4.00
223 234 4.962995 TCCACAGTTTCCCATTTTTGGTTA 59.037 37.500 0.00 0.00 0.00 2.85
231 242 9.386010 AGTTTCCCATTTTTGGTTAAAACTTAC 57.614 29.630 9.67 0.00 38.48 2.34
235 246 8.759782 TCCCATTTTTGGTTAAAACTTACAGAA 58.240 29.630 0.00 0.00 38.48 3.02
247 258 9.685828 TTAAAACTTACAGAATAATTGCGCTTT 57.314 25.926 9.73 5.07 0.00 3.51
336 347 2.203266 TGCCGATTGGTGTGTGCA 60.203 55.556 0.00 0.00 37.67 4.57
352 363 1.226831 GCACAAAACCACCACCACG 60.227 57.895 0.00 0.00 0.00 4.94
378 389 9.817809 GTCACTGGTCATATAAATTTCACTAGA 57.182 33.333 0.00 0.00 0.00 2.43
471 484 7.867921 AGTGGTCAAATATAATGTTAGTCCCA 58.132 34.615 0.00 0.00 0.00 4.37
522 700 2.223525 ACAAATACTAGAGACCGCTCGC 60.224 50.000 0.00 0.00 45.98 5.03
617 798 4.944619 TCATCTCGCTTTGACATATCCT 57.055 40.909 0.00 0.00 0.00 3.24
640 821 7.068593 TCCTACATTTTATGGCATCTTTGGAAG 59.931 37.037 1.65 0.00 33.60 3.46
641 822 6.855763 ACATTTTATGGCATCTTTGGAAGA 57.144 33.333 1.65 0.00 36.87 2.87
703 890 4.345859 AAAGGACACGACATCTTGGTTA 57.654 40.909 0.00 0.00 0.00 2.85
715 902 9.498176 ACGACATCTTGGTTACTACTAAAAATT 57.502 29.630 0.00 0.00 0.00 1.82
723 910 8.931905 TGGTTACTACTAAAAATTAAAACGCG 57.068 30.769 3.53 3.53 0.00 6.01
728 915 5.435820 ACTAAAAATTAAAACGCGGGACA 57.564 34.783 12.47 0.00 0.00 4.02
740 931 0.033504 GCGGGACAGTTGAGAAGTGA 59.966 55.000 0.00 0.00 35.76 3.41
821 1016 5.510179 GCCTACCGAATTGCTAGTACCATTA 60.510 44.000 0.00 0.00 0.00 1.90
833 1028 8.313944 TGCTAGTACCATTAAACTCTATGGAA 57.686 34.615 8.03 0.00 43.25 3.53
962 1158 2.749776 CCACGTCCGCATATACATTGA 58.250 47.619 0.00 0.00 0.00 2.57
1012 1296 9.113876 GGAAAACAACAACAATATATATAGCGC 57.886 33.333 0.00 0.00 0.00 5.92
1060 1348 1.860641 TGGTGCTGCTAGCTACCTTA 58.139 50.000 25.80 12.31 42.97 2.69
1078 1368 7.339976 GCTACCTTACTCTCTCCTTTTTCTCTA 59.660 40.741 0.00 0.00 0.00 2.43
1083 1373 9.801873 CTTACTCTCTCCTTTTTCTCTATCTTG 57.198 37.037 0.00 0.00 0.00 3.02
1171 1711 1.074727 TCTTCCGCTTGATTTCCCCAA 59.925 47.619 0.00 0.00 0.00 4.12
1176 1718 0.247460 GCTTGATTTCCCCAACTGCC 59.753 55.000 0.00 0.00 0.00 4.85
1212 1754 4.401202 CCTCCCACTTTCTCTTCTCTCTAC 59.599 50.000 0.00 0.00 0.00 2.59
1221 1763 3.200165 TCTCTTCTCTCTACATCACCGGA 59.800 47.826 9.46 0.00 0.00 5.14
1245 1787 0.922626 ATCTTCCTTCCTGCCTTCCC 59.077 55.000 0.00 0.00 0.00 3.97
1257 1799 2.686915 CTGCCTTCCCTGATTCATCAAC 59.313 50.000 0.00 0.00 36.18 3.18
1350 1892 6.183360 GCATATTCCCTCATGATGTTGTTCAA 60.183 38.462 0.00 0.00 0.00 2.69
1394 2221 2.104792 TGCACTCAGTGAGCTAGGTTTT 59.895 45.455 20.31 0.00 35.23 2.43
1438 2756 8.923838 ATCTTGGAATATACTCCATATCAGGT 57.076 34.615 3.28 0.00 45.03 4.00
1467 2786 8.770828 TCTTTTTCTGGTCGAAATTTACAGTAG 58.229 33.333 0.00 0.00 41.04 2.57
1484 2803 1.315257 TAGCCGACCAGTTACCGGAC 61.315 60.000 9.46 0.00 45.58 4.79
1498 2872 3.261981 ACCGGACATTTCATAGACACC 57.738 47.619 9.46 0.00 0.00 4.16
1499 2873 2.093128 ACCGGACATTTCATAGACACCC 60.093 50.000 9.46 0.00 0.00 4.61
1500 2874 2.201732 CGGACATTTCATAGACACCCG 58.798 52.381 0.00 0.00 0.00 5.28
1501 2875 2.159156 CGGACATTTCATAGACACCCGA 60.159 50.000 0.00 0.00 36.86 5.14
1502 2876 3.458189 GGACATTTCATAGACACCCGAG 58.542 50.000 0.00 0.00 0.00 4.63
1503 2877 3.132289 GGACATTTCATAGACACCCGAGA 59.868 47.826 0.00 0.00 0.00 4.04
1504 2878 4.382685 GGACATTTCATAGACACCCGAGAA 60.383 45.833 0.00 0.00 0.00 2.87
1505 2879 5.160607 ACATTTCATAGACACCCGAGAAA 57.839 39.130 0.00 0.00 0.00 2.52
1506 2880 4.935808 ACATTTCATAGACACCCGAGAAAC 59.064 41.667 0.00 0.00 0.00 2.78
1507 2881 4.610605 TTTCATAGACACCCGAGAAACA 57.389 40.909 0.00 0.00 0.00 2.83
1508 2882 3.868757 TCATAGACACCCGAGAAACAG 57.131 47.619 0.00 0.00 0.00 3.16
1509 2883 3.162666 TCATAGACACCCGAGAAACAGT 58.837 45.455 0.00 0.00 0.00 3.55
1510 2884 3.056821 TCATAGACACCCGAGAAACAGTG 60.057 47.826 0.00 0.00 36.30 3.66
1511 2885 0.393077 AGACACCCGAGAAACAGTGG 59.607 55.000 0.00 0.00 34.50 4.00
1512 2886 1.227853 ACACCCGAGAAACAGTGGC 60.228 57.895 0.00 0.00 34.50 5.01
1513 2887 1.227823 CACCCGAGAAACAGTGGCA 60.228 57.895 0.00 0.00 0.00 4.92
1514 2888 1.227853 ACCCGAGAAACAGTGGCAC 60.228 57.895 10.29 10.29 0.00 5.01
1515 2889 1.966451 CCCGAGAAACAGTGGCACC 60.966 63.158 15.27 0.00 0.00 5.01
1516 2890 1.227823 CCGAGAAACAGTGGCACCA 60.228 57.895 15.27 0.00 0.00 4.17
1517 2891 1.507141 CCGAGAAACAGTGGCACCAC 61.507 60.000 15.27 12.02 46.50 4.16
1527 2901 2.793278 GTGGCACCACTCGAAAAATT 57.207 45.000 12.66 0.00 43.12 1.82
1528 2902 2.661594 GTGGCACCACTCGAAAAATTC 58.338 47.619 12.66 0.00 43.12 2.17
1529 2903 2.034053 GTGGCACCACTCGAAAAATTCA 59.966 45.455 12.66 0.00 43.12 2.57
1530 2904 2.690497 TGGCACCACTCGAAAAATTCAA 59.310 40.909 0.00 0.00 0.00 2.69
1531 2905 3.131223 TGGCACCACTCGAAAAATTCAAA 59.869 39.130 0.00 0.00 0.00 2.69
1532 2906 4.116238 GGCACCACTCGAAAAATTCAAAA 58.884 39.130 0.00 0.00 0.00 2.44
1533 2907 4.568760 GGCACCACTCGAAAAATTCAAAAA 59.431 37.500 0.00 0.00 0.00 1.94
1578 2952 2.595238 AGAGGTACCACTGTTTCTCGT 58.405 47.619 15.94 0.00 31.63 4.18
1691 3067 5.536161 CAGCAAAATAGCACCACCCTTATAT 59.464 40.000 0.00 0.00 36.85 0.86
1692 3068 6.714810 CAGCAAAATAGCACCACCCTTATATA 59.285 38.462 0.00 0.00 36.85 0.86
1693 3069 6.715264 AGCAAAATAGCACCACCCTTATATAC 59.285 38.462 0.00 0.00 36.85 1.47
1694 3070 6.715264 GCAAAATAGCACCACCCTTATATACT 59.285 38.462 0.00 0.00 0.00 2.12
1696 3072 7.388638 AAATAGCACCACCCTTATATACTGT 57.611 36.000 0.00 0.00 0.00 3.55
1699 3075 6.420913 AGCACCACCCTTATATACTGTTAG 57.579 41.667 0.00 0.00 0.00 2.34
1712 3492 7.736031 ATATACTGTTAGCGTGCATTATACG 57.264 36.000 0.00 0.00 43.93 3.06
1769 3569 0.955428 TGGGACATTGCTCAGAACGC 60.955 55.000 0.00 0.00 0.00 4.84
1771 3571 0.445436 GGACATTGCTCAGAACGCTG 59.555 55.000 0.00 0.00 43.67 5.18
1775 3575 1.061711 CATTGCTCAGAACGCTGTAGC 59.938 52.381 0.00 0.00 42.84 3.58
1788 3606 0.938713 CTGTAGCGCGCTAGTACTCT 59.061 55.000 39.08 15.96 0.00 3.24
1789 3607 1.331138 CTGTAGCGCGCTAGTACTCTT 59.669 52.381 39.08 15.16 0.00 2.85
1803 3621 2.305858 ACTCTTAAGAGGTCACGGGT 57.694 50.000 30.98 10.15 46.13 5.28
1807 3625 4.015084 CTCTTAAGAGGTCACGGGTTCTA 58.985 47.826 22.67 0.00 38.48 2.10
1846 3664 8.918202 AAGTTTATGTCTGATGTAGGTCAAAA 57.082 30.769 0.00 0.00 0.00 2.44
1847 3665 9.520515 AAGTTTATGTCTGATGTAGGTCAAAAT 57.479 29.630 0.00 0.00 0.00 1.82
1885 3704 6.693466 ACCGGAAATAAATGTAAACCCAAAG 58.307 36.000 9.46 0.00 0.00 2.77
2013 3854 9.487442 TCCATATATATATTGGCCGATATGCTA 57.513 33.333 29.16 21.23 0.00 3.49
2063 3904 1.734117 GCTGCAACAATTCGGCACC 60.734 57.895 0.00 0.00 34.83 5.01
2068 3909 1.804372 GCAACAATTCGGCACCAACAA 60.804 47.619 0.00 0.00 0.00 2.83
2081 3922 5.671493 GGCACCAACAATCATAGTACTACT 58.329 41.667 4.31 0.00 0.00 2.57
2086 3927 9.871238 CACCAACAATCATAGTACTACTACTTT 57.129 33.333 4.31 0.00 32.84 2.66
2097 3938 7.771927 AGTACTACTACTTTTTCACCTGCTA 57.228 36.000 0.00 0.00 27.62 3.49
2103 3944 5.778750 ACTACTTTTTCACCTGCTAGTCCTA 59.221 40.000 0.00 0.00 0.00 2.94
2117 3958 4.560513 GCTAGTCCTAGTGATGGAGAATGC 60.561 50.000 3.45 0.00 35.65 3.56
2118 3959 3.378512 AGTCCTAGTGATGGAGAATGCA 58.621 45.455 0.00 0.00 44.23 3.96
2119 3960 3.387374 AGTCCTAGTGATGGAGAATGCAG 59.613 47.826 0.00 0.00 42.42 4.41
2120 3961 2.103771 TCCTAGTGATGGAGAATGCAGC 59.896 50.000 0.00 0.00 42.42 5.25
2126 3967 2.872370 GATGGAGAATGCAGCAACAAC 58.128 47.619 0.00 0.00 44.48 3.32
2127 3968 1.689984 TGGAGAATGCAGCAACAACA 58.310 45.000 0.00 0.00 0.00 3.33
2128 3969 2.030371 TGGAGAATGCAGCAACAACAA 58.970 42.857 0.00 0.00 0.00 2.83
2129 3970 2.223782 TGGAGAATGCAGCAACAACAAC 60.224 45.455 0.00 0.00 0.00 3.32
2130 3971 2.223782 GGAGAATGCAGCAACAACAACA 60.224 45.455 0.00 0.00 0.00 3.33
2131 3972 3.446799 GAGAATGCAGCAACAACAACAA 58.553 40.909 0.00 0.00 0.00 2.83
2132 3973 3.189285 AGAATGCAGCAACAACAACAAC 58.811 40.909 0.00 0.00 0.00 3.32
2133 3974 2.669300 ATGCAGCAACAACAACAACA 57.331 40.000 0.00 0.00 0.00 3.33
2134 3975 2.445565 TGCAGCAACAACAACAACAA 57.554 40.000 0.00 0.00 0.00 2.83
2135 3976 2.064762 TGCAGCAACAACAACAACAAC 58.935 42.857 0.00 0.00 0.00 3.32
2136 3977 2.064762 GCAGCAACAACAACAACAACA 58.935 42.857 0.00 0.00 0.00 3.33
2137 3978 2.478134 GCAGCAACAACAACAACAACAA 59.522 40.909 0.00 0.00 0.00 2.83
2138 3979 3.664014 GCAGCAACAACAACAACAACAAC 60.664 43.478 0.00 0.00 0.00 3.32
2139 3980 3.492383 CAGCAACAACAACAACAACAACA 59.508 39.130 0.00 0.00 0.00 3.33
2140 3981 4.025396 CAGCAACAACAACAACAACAACAA 60.025 37.500 0.00 0.00 0.00 2.83
2141 3982 4.025313 AGCAACAACAACAACAACAACAAC 60.025 37.500 0.00 0.00 0.00 3.32
2142 3983 4.260375 GCAACAACAACAACAACAACAACA 60.260 37.500 0.00 0.00 0.00 3.33
2143 3984 5.727791 GCAACAACAACAACAACAACAACAA 60.728 36.000 0.00 0.00 0.00 2.83
2144 3985 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
2145 3986 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
2146 3987 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
2147 3988 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
2148 3989 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
2149 3990 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
2150 3991 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
2151 3992 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
2152 3993 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
2153 3994 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
2154 3995 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
2155 3996 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
2156 3997 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
2157 3998 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
2158 3999 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
2159 4000 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
2160 4001 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
2161 4002 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
2162 4003 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
2163 4004 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
2164 4005 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
2165 4006 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
2166 4007 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
2167 4008 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
2168 4009 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
2169 4010 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
2170 4011 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
2171 4012 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
2172 4013 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
2173 4014 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
2174 4015 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
2175 4016 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
2176 4017 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
2177 4018 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
2178 4019 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
2179 4020 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
2180 4021 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
2181 4022 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
2182 4023 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
2183 4024 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
2184 4025 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
2185 4026 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
2186 4027 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
2187 4028 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
2188 4029 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
2189 4030 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
2190 4031 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
2191 4032 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
2192 4033 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
2193 4034 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
2194 4035 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
2195 4036 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
2196 4037 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
2197 4038 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
2444 4288 6.916932 GCTACTTCAATAACTACTCCCTTACG 59.083 42.308 0.00 0.00 0.00 3.18
2513 4357 2.977456 ATGCTTCGCAACGTGCCA 60.977 55.556 0.00 0.00 43.62 4.92
2603 4447 0.822532 CCGCTATGGTAGGGACGTCT 60.823 60.000 16.46 0.00 40.83 4.18
2618 4462 2.065993 CGTCTTCCGTGACATCAACT 57.934 50.000 0.00 0.00 36.82 3.16
2633 4477 4.222810 ACATCAACTATGTCCAGCAGTACA 59.777 41.667 0.00 0.00 46.15 2.90
2636 4480 4.039852 TCAACTATGTCCAGCAGTACAACA 59.960 41.667 0.00 0.00 0.00 3.33
2688 4533 2.308570 AGATTGCAGTACCCCATGTTCA 59.691 45.455 0.00 0.00 0.00 3.18
2690 4535 1.064003 TGCAGTACCCCATGTTCAGT 58.936 50.000 0.00 0.00 0.00 3.41
2803 4648 4.999212 TGCTTACGCAATGGACGA 57.001 50.000 0.00 0.00 44.62 4.20
2814 4659 2.434658 AATGGACGACTGTGCGCAGA 62.435 55.000 32.90 9.44 45.28 4.26
2862 4707 0.955428 GATGGAGCAGTTGTCGGCAA 60.955 55.000 0.00 0.00 37.23 4.52
2892 4740 1.472480 GTTTCCCATTCATCCACGTGG 59.528 52.381 29.26 29.26 0.00 4.94
2915 4763 4.586421 GTGGATCATCAGATGTCTGGACTA 59.414 45.833 10.34 0.00 43.91 2.59
2939 4787 0.099968 CTGAAGCAATGCCCATCACG 59.900 55.000 0.00 0.00 0.00 4.35
2952 4803 1.596203 ATCACGATGGCTGCGATGG 60.596 57.895 0.66 3.25 0.00 3.51
2970 4821 0.623723 GGAGGGCATGTTCCACCTAA 59.376 55.000 13.46 0.00 32.42 2.69
3034 4885 3.714487 AACAGTTGCACCACCCGCT 62.714 57.895 0.00 0.00 0.00 5.52
3108 4959 0.887933 GGACGTGGTCAATGGCAATT 59.112 50.000 0.00 0.00 33.68 2.32
3161 5012 5.390613 ACTCGCAATGCAACTTGTAATTAC 58.609 37.500 8.75 8.75 0.00 1.89
3212 5064 7.888021 TCTTAGATTAATGTGTGGTGAAATGGT 59.112 33.333 0.00 0.00 0.00 3.55
3217 5069 2.226330 TGTGTGGTGAAATGGTGTAGC 58.774 47.619 0.00 0.00 0.00 3.58
3285 5139 7.275341 TCAACTTGTCAATGATGTGTTGTTTTC 59.725 33.333 17.50 0.00 35.98 2.29
3296 5150 3.186909 GTGTTGTTTTCCTGAACTTGGC 58.813 45.455 0.00 0.00 0.00 4.52
3383 5241 2.963782 CACTCTTAATACCCTACCGCCT 59.036 50.000 0.00 0.00 0.00 5.52
3430 5288 1.045407 GACCATCGGTACCTATGGCA 58.955 55.000 34.53 4.50 45.53 4.92
3478 5336 1.151668 CTCTTCTTGAAGGTGGCACG 58.848 55.000 12.17 0.00 0.00 5.34
3538 5397 2.038557 AGTTGGTGTAGGCTTACCACTG 59.961 50.000 19.21 0.00 46.03 3.66
3554 5416 5.084818 ACCACTGTATCATCGACATTGAA 57.915 39.130 0.00 0.00 31.10 2.69
3569 5433 3.076785 ACATTGAAAATGGTAGGGTCCCA 59.923 43.478 11.55 0.00 36.16 4.37
3575 5439 2.159179 ATGGTAGGGTCCCATTTTGC 57.841 50.000 11.55 0.00 39.73 3.68
3590 5454 0.179124 TTTGCGCCACCTTCAACAAC 60.179 50.000 4.18 0.00 0.00 3.32
3607 5472 4.014569 ACAACATAATGTTTTTGGGGGC 57.985 40.909 0.00 0.00 38.77 5.80
3610 5475 3.247162 ACATAATGTTTTTGGGGGCAGT 58.753 40.909 0.00 0.00 0.00 4.40
3628 5493 2.100584 CAGTCAGGATCCTACTGTCAGC 59.899 54.545 26.93 10.81 36.66 4.26
3654 5520 2.107950 TGAGGTACCATTTCAAGCCG 57.892 50.000 15.94 0.00 0.00 5.52
3695 5561 1.790755 AGACTTAACATCGCAACGCA 58.209 45.000 0.00 0.00 0.00 5.24
3714 5580 1.745320 AAGAGTCGGCGGTTGTGAGT 61.745 55.000 7.21 0.00 0.00 3.41
3719 5585 1.802365 GTCGGCGGTTGTGAGTTTTAT 59.198 47.619 7.21 0.00 0.00 1.40
3720 5586 1.801771 TCGGCGGTTGTGAGTTTTATG 59.198 47.619 7.21 0.00 0.00 1.90
3724 5590 4.614993 CGGCGGTTGTGAGTTTTATGAATT 60.615 41.667 0.00 0.00 0.00 2.17
3755 5622 9.581289 TGTTCCCAAGTTCAAAAGATAAATAGA 57.419 29.630 0.00 0.00 0.00 1.98
3804 5671 5.186409 TGACATTAGGTAGTACAAGTCCCAC 59.814 44.000 2.06 0.00 0.00 4.61
3873 5743 2.995939 TGCTTCATCTTACTCTTGTGCG 59.004 45.455 0.00 0.00 0.00 5.34
3874 5744 2.222908 GCTTCATCTTACTCTTGTGCGC 60.223 50.000 0.00 0.00 0.00 6.09
3877 5747 0.530744 ATCTTACTCTTGTGCGCGGA 59.469 50.000 8.83 0.00 0.00 5.54
3880 5750 1.529438 CTTACTCTTGTGCGCGGAAAA 59.471 47.619 8.83 5.38 0.00 2.29
3890 5760 2.026522 CGCGGAAAACCCTTTCACA 58.973 52.632 0.00 0.00 42.44 3.58
3933 5803 1.745141 CGAGCCTCCTTCCCAATTCAG 60.745 57.143 0.00 0.00 0.00 3.02
4020 5894 1.200020 GCAAAGACTCATTGAACCGGG 59.800 52.381 6.32 0.00 0.00 5.73
4045 5919 1.312815 GGCTATGCACCAATCACTCC 58.687 55.000 0.00 0.00 0.00 3.85
4055 5929 2.290514 ACCAATCACTCCACAGGTCATG 60.291 50.000 0.00 0.00 0.00 3.07
4057 5931 3.055167 CCAATCACTCCACAGGTCATGTA 60.055 47.826 0.00 0.00 41.41 2.29
4117 5991 1.990060 TCCAAGGAGGAAGAGGCGG 60.990 63.158 0.00 0.00 45.65 6.13
4136 6012 3.181575 GCGGCTACAAAAACATGTTTGTC 59.818 43.478 23.93 11.73 46.29 3.18
4175 6051 6.527023 CACAAAATGAGATCTCTTGATGTTGC 59.473 38.462 23.00 0.00 32.19 4.17
4182 6058 8.515695 TGAGATCTCTTGATGTTGCATTTAAT 57.484 30.769 22.95 0.00 32.19 1.40
4223 6099 0.876777 TGTTAGTTGGACGTGCACGG 60.877 55.000 39.21 23.04 44.95 4.94
4226 6102 0.598158 TAGTTGGACGTGCACGGTTC 60.598 55.000 39.21 28.59 44.95 3.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 5.418840 AGCAACCAAACTGTTATGATTAGGG 59.581 40.000 0.00 0.00 0.00 3.53
11 12 8.397575 TGTTAGCAACCAAACTGTTATGATTA 57.602 30.769 0.00 0.00 0.00 1.75
13 14 6.892658 TGTTAGCAACCAAACTGTTATGAT 57.107 33.333 0.00 0.00 0.00 2.45
17 18 5.285651 GCAATGTTAGCAACCAAACTGTTA 58.714 37.500 0.00 0.00 0.00 2.41
22 23 2.058057 CCGCAATGTTAGCAACCAAAC 58.942 47.619 0.00 0.00 0.00 2.93
24 25 1.268352 GTCCGCAATGTTAGCAACCAA 59.732 47.619 0.00 0.00 0.00 3.67
43 44 2.602257 TAGATGCTTGCTATGCGTGT 57.398 45.000 0.00 0.00 0.00 4.49
47 55 5.428496 TTCATGTTAGATGCTTGCTATGC 57.572 39.130 0.00 0.00 0.00 3.14
82 91 7.054491 ACTTCGGGTTTAACTTGTCTACTTA 57.946 36.000 0.00 0.00 0.00 2.24
85 94 7.063898 GGAATACTTCGGGTTTAACTTGTCTAC 59.936 40.741 0.00 0.00 0.00 2.59
223 234 8.587952 AAAAGCGCAATTATTCTGTAAGTTTT 57.412 26.923 11.47 0.00 33.76 2.43
231 242 9.464248 GACAAAAATAAAAGCGCAATTATTCTG 57.536 29.630 22.58 22.29 32.12 3.02
235 246 7.816995 TCAGGACAAAAATAAAAGCGCAATTAT 59.183 29.630 11.47 11.03 0.00 1.28
237 248 5.988561 TCAGGACAAAAATAAAAGCGCAATT 59.011 32.000 11.47 6.54 0.00 2.32
302 313 5.508200 TCGGCACAAAAACAAGATAAAGT 57.492 34.783 0.00 0.00 0.00 2.66
303 314 6.128849 CCAATCGGCACAAAAACAAGATAAAG 60.129 38.462 0.00 0.00 0.00 1.85
336 347 0.322636 TGACGTGGTGGTGGTTTTGT 60.323 50.000 0.00 0.00 0.00 2.83
352 363 9.817809 TCTAGTGAAATTTATATGACCAGTGAC 57.182 33.333 0.00 0.00 0.00 3.67
378 389 3.068590 GGTTGGATGATTTGATCGCCAAT 59.931 43.478 14.16 0.00 43.46 3.16
449 462 7.393515 GGGATGGGACTAACATTATATTTGACC 59.606 40.741 0.00 0.00 0.00 4.02
471 484 7.448469 GGATATACAACTTAGTTTGCATGGGAT 59.552 37.037 0.00 0.00 0.00 3.85
542 723 3.997021 ACATAGAGAAAAAGTGACAGCCG 59.003 43.478 0.00 0.00 0.00 5.52
543 724 7.764443 TGTATACATAGAGAAAAAGTGACAGCC 59.236 37.037 0.08 0.00 0.00 4.85
617 798 7.395772 TGTCTTCCAAAGATGCCATAAAATGTA 59.604 33.333 0.00 0.00 40.18 2.29
675 862 3.997021 AGATGTCGTGTCCTTTTCATCAC 59.003 43.478 0.00 0.00 35.56 3.06
685 872 3.314541 AGTAACCAAGATGTCGTGTCC 57.685 47.619 0.00 0.00 0.00 4.02
703 890 6.204495 TGTCCCGCGTTTTAATTTTTAGTAGT 59.796 34.615 4.92 0.00 0.00 2.73
715 902 1.068895 TCTCAACTGTCCCGCGTTTTA 59.931 47.619 4.92 0.00 0.00 1.52
721 908 0.033504 TCACTTCTCAACTGTCCCGC 59.966 55.000 0.00 0.00 0.00 6.13
723 910 3.744660 ACAATCACTTCTCAACTGTCCC 58.255 45.455 0.00 0.00 0.00 4.46
728 915 4.855715 TCGAGACAATCACTTCTCAACT 57.144 40.909 0.00 0.00 38.59 3.16
740 931 6.754209 GTCATATCACTCTGTTTCGAGACAAT 59.246 38.462 10.29 3.15 35.06 2.71
821 1016 2.852449 TCCTGGCCATTCCATAGAGTTT 59.148 45.455 5.51 0.00 45.50 2.66
833 1028 4.400251 CGCATAATTAATCATCCTGGCCAT 59.600 41.667 5.51 0.00 0.00 4.40
839 1034 3.758554 GCCACCGCATAATTAATCATCCT 59.241 43.478 0.00 0.00 34.03 3.24
962 1158 6.093909 CCTTCATTTGCACACTTTTCCTTTTT 59.906 34.615 0.00 0.00 0.00 1.94
1012 1296 2.034685 TGAGAGAGAAGGAACACACACG 59.965 50.000 0.00 0.00 0.00 4.49
1060 1348 7.790782 ACAAGATAGAGAAAAAGGAGAGAGT 57.209 36.000 0.00 0.00 0.00 3.24
1112 1402 5.393068 AAGGAATGGAATGGATGCTAGAA 57.607 39.130 0.00 0.00 0.00 2.10
1171 1711 1.348036 AGGAAGAAACTTAGCGGCAGT 59.652 47.619 1.45 0.00 0.00 4.40
1176 1718 2.028020 AGTGGGAGGAAGAAACTTAGCG 60.028 50.000 0.00 0.00 0.00 4.26
1212 1754 4.815533 AGGAAGATCATATCCGGTGATG 57.184 45.455 10.54 10.73 40.78 3.07
1221 1763 4.042684 GGAAGGCAGGAAGGAAGATCATAT 59.957 45.833 0.00 0.00 0.00 1.78
1245 1787 5.005740 TGTTCCAGAAGGTTGATGAATCAG 58.994 41.667 0.00 0.00 38.19 2.90
1257 1799 0.602905 GTGGTCGGTGTTCCAGAAGG 60.603 60.000 0.00 0.00 34.16 3.46
1350 1892 9.539825 TGCACACATATTCTTATTTTTGTTGTT 57.460 25.926 0.00 0.00 0.00 2.83
1467 2786 2.125793 GTCCGGTAACTGGTCGGC 60.126 66.667 0.00 0.00 43.10 5.54
1484 2803 4.935205 TGTTTCTCGGGTGTCTATGAAATG 59.065 41.667 0.00 0.00 0.00 2.32
1498 2872 1.227823 TGGTGCCACTGTTTCTCGG 60.228 57.895 0.00 0.00 0.00 4.63
1499 2873 1.941812 GTGGTGCCACTGTTTCTCG 59.058 57.895 13.68 0.00 43.12 4.04
1508 2882 2.034053 TGAATTTTTCGAGTGGTGCCAC 59.966 45.455 13.13 13.13 46.50 5.01
1509 2883 2.302260 TGAATTTTTCGAGTGGTGCCA 58.698 42.857 0.00 0.00 0.00 4.92
1510 2884 3.363341 TTGAATTTTTCGAGTGGTGCC 57.637 42.857 0.00 0.00 0.00 5.01
1511 2885 5.710613 TTTTTGAATTTTTCGAGTGGTGC 57.289 34.783 0.00 0.00 0.00 5.01
1535 2909 4.954875 TGGCCGTTCAAATTCTCATTTTT 58.045 34.783 0.00 0.00 29.41 1.94
1536 2910 4.599047 TGGCCGTTCAAATTCTCATTTT 57.401 36.364 0.00 0.00 29.41 1.82
1537 2911 4.280677 TCTTGGCCGTTCAAATTCTCATTT 59.719 37.500 0.00 0.00 32.36 2.32
1538 2912 3.826157 TCTTGGCCGTTCAAATTCTCATT 59.174 39.130 0.00 0.00 0.00 2.57
1539 2913 3.420893 TCTTGGCCGTTCAAATTCTCAT 58.579 40.909 0.00 0.00 0.00 2.90
1540 2914 2.813754 CTCTTGGCCGTTCAAATTCTCA 59.186 45.455 0.00 0.00 0.00 3.27
1541 2915 2.162408 CCTCTTGGCCGTTCAAATTCTC 59.838 50.000 0.00 0.00 0.00 2.87
1542 2916 2.162681 CCTCTTGGCCGTTCAAATTCT 58.837 47.619 0.00 0.00 0.00 2.40
1543 2917 1.886542 ACCTCTTGGCCGTTCAAATTC 59.113 47.619 0.00 0.00 36.63 2.17
1544 2918 1.995376 ACCTCTTGGCCGTTCAAATT 58.005 45.000 0.00 0.00 36.63 1.82
1545 2919 2.433436 GTACCTCTTGGCCGTTCAAAT 58.567 47.619 0.00 0.00 36.63 2.32
1546 2920 1.543871 GGTACCTCTTGGCCGTTCAAA 60.544 52.381 4.06 0.00 36.63 2.69
1547 2921 0.035739 GGTACCTCTTGGCCGTTCAA 59.964 55.000 4.06 0.00 36.63 2.69
1548 2922 1.122632 TGGTACCTCTTGGCCGTTCA 61.123 55.000 14.36 0.00 36.63 3.18
1549 2923 0.672711 GTGGTACCTCTTGGCCGTTC 60.673 60.000 14.36 0.00 36.63 3.95
1550 2924 1.125711 AGTGGTACCTCTTGGCCGTT 61.126 55.000 14.36 0.00 36.63 4.44
1551 2925 1.535687 AGTGGTACCTCTTGGCCGT 60.536 57.895 14.36 0.00 36.63 5.68
1552 2926 1.079127 CAGTGGTACCTCTTGGCCG 60.079 63.158 13.85 0.00 36.63 6.13
1553 2927 0.400594 AACAGTGGTACCTCTTGGCC 59.599 55.000 13.85 0.00 36.63 5.36
1554 2928 2.152016 GAAACAGTGGTACCTCTTGGC 58.848 52.381 13.85 1.16 36.63 4.52
1555 2929 3.665190 GAGAAACAGTGGTACCTCTTGG 58.335 50.000 13.85 6.74 39.83 3.61
1556 2930 3.243771 ACGAGAAACAGTGGTACCTCTTG 60.244 47.826 13.85 12.08 0.00 3.02
1622 2997 4.380843 ACATACCCTGTTTGATTCACCA 57.619 40.909 0.00 0.00 32.90 4.17
1667 3043 1.549203 AGGGTGGTGCTATTTTGCTG 58.451 50.000 0.00 0.00 0.00 4.41
1691 3067 5.172460 TCGTATAATGCACGCTAACAGTA 57.828 39.130 0.00 0.00 39.23 2.74
1692 3068 4.036567 TCGTATAATGCACGCTAACAGT 57.963 40.909 0.00 0.00 39.23 3.55
1693 3069 4.934666 CATCGTATAATGCACGCTAACAG 58.065 43.478 0.00 0.00 39.23 3.16
1694 3070 4.965042 CATCGTATAATGCACGCTAACA 57.035 40.909 0.00 0.00 39.23 2.41
1712 3492 7.923344 AGTGTAAGATGTGTCACTAATAGCATC 59.077 37.037 4.27 0.00 39.01 3.91
1750 3550 0.955428 GCGTTCTGAGCAATGTCCCA 60.955 55.000 0.00 0.00 34.19 4.37
1769 3569 0.938713 AGAGTACTAGCGCGCTACAG 59.061 55.000 35.48 30.04 0.00 2.74
1771 3571 3.247173 TCTTAAGAGTACTAGCGCGCTAC 59.753 47.826 35.48 28.26 0.00 3.58
1775 3575 2.613133 ACCTCTTAAGAGTACTAGCGCG 59.387 50.000 26.83 13.16 40.48 6.86
1788 3606 2.827921 GGTAGAACCCGTGACCTCTTAA 59.172 50.000 0.00 0.00 30.04 1.85
1789 3607 2.042162 AGGTAGAACCCGTGACCTCTTA 59.958 50.000 0.00 0.00 37.83 2.10
1803 3621 2.441750 ACTTCCCTGTGCAAAGGTAGAA 59.558 45.455 21.88 16.59 35.34 2.10
1807 3625 2.159179 AAACTTCCCTGTGCAAAGGT 57.841 45.000 21.88 0.36 35.34 3.50
1885 3704 8.496872 TTTTCGTTCGAATAATTCAAAGGAAC 57.503 30.769 0.00 0.00 35.46 3.62
1912 3736 4.941873 GGTACATCTCGGAAGTTTTGGAAT 59.058 41.667 0.00 0.00 0.00 3.01
1913 3737 4.202377 TGGTACATCTCGGAAGTTTTGGAA 60.202 41.667 0.00 0.00 0.00 3.53
1931 3761 1.422388 GACGAACCGGTTTCTGGTAC 58.578 55.000 23.22 5.51 39.29 3.34
2030 3871 2.427232 GCAGCTGCAAATCAACAAGA 57.573 45.000 33.36 0.00 41.59 3.02
2055 3896 3.066291 ACTATGATTGTTGGTGCCGAA 57.934 42.857 0.00 0.00 0.00 4.30
2081 3922 5.778750 ACTAGGACTAGCAGGTGAAAAAGTA 59.221 40.000 6.28 0.00 36.66 2.24
2086 3927 3.774734 TCACTAGGACTAGCAGGTGAAA 58.225 45.455 6.28 0.00 36.66 2.69
2097 3938 3.378512 TGCATTCTCCATCACTAGGACT 58.621 45.455 0.00 0.00 0.00 3.85
2103 3944 2.089980 GTTGCTGCATTCTCCATCACT 58.910 47.619 1.84 0.00 0.00 3.41
2117 3958 3.492383 TGTTGTTGTTGTTGTTGTTGCTG 59.508 39.130 0.00 0.00 0.00 4.41
2118 3959 3.722147 TGTTGTTGTTGTTGTTGTTGCT 58.278 36.364 0.00 0.00 0.00 3.91
2119 3960 4.207599 GTTGTTGTTGTTGTTGTTGTTGC 58.792 39.130 0.00 0.00 0.00 4.17
2120 3961 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
2121 3962 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
2122 3963 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
2123 3964 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
2124 3965 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
2125 3966 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
2126 3967 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
2127 3968 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
2128 3969 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
2129 3970 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
2130 3971 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
2131 3972 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
2132 3973 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
2133 3974 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
2134 3975 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
2135 3976 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
2136 3977 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
2137 3978 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
2138 3979 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
2139 3980 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
2140 3981 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
2141 3982 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
2142 3983 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
2143 3984 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
2144 3985 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
2145 3986 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
2146 3987 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
2147 3988 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
2148 3989 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
2149 3990 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
2150 3991 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
2151 3992 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
2152 3993 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
2153 3994 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
2154 3995 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
2155 3996 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
2156 3997 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
2157 3998 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
2158 3999 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
2159 4000 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
2160 4001 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
2161 4002 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
2162 4003 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
2163 4004 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
2164 4005 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
2165 4006 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
2166 4007 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
2167 4008 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
2168 4009 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
2169 4010 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
2170 4011 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
2171 4012 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
2172 4013 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
2173 4014 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
2174 4015 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
2175 4016 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
2176 4017 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
2177 4018 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
2178 4019 5.812642 TCTTGTTGTTGTTGTTGTTGTTGTT 59.187 32.000 0.00 0.00 0.00 2.83
2179 4020 5.352284 TCTTGTTGTTGTTGTTGTTGTTGT 58.648 33.333 0.00 0.00 0.00 3.32
2180 4021 5.896922 TCTTGTTGTTGTTGTTGTTGTTG 57.103 34.783 0.00 0.00 0.00 3.33
2181 4022 5.812642 TGTTCTTGTTGTTGTTGTTGTTGTT 59.187 32.000 0.00 0.00 0.00 2.83
2182 4023 5.352284 TGTTCTTGTTGTTGTTGTTGTTGT 58.648 33.333 0.00 0.00 0.00 3.32
2183 4024 5.896922 TGTTCTTGTTGTTGTTGTTGTTG 57.103 34.783 0.00 0.00 0.00 3.33
2184 4025 5.812642 TGTTGTTCTTGTTGTTGTTGTTGTT 59.187 32.000 0.00 0.00 0.00 2.83
2185 4026 5.352284 TGTTGTTCTTGTTGTTGTTGTTGT 58.648 33.333 0.00 0.00 0.00 3.32
2186 4027 5.896922 TGTTGTTCTTGTTGTTGTTGTTG 57.103 34.783 0.00 0.00 0.00 3.33
2187 4028 6.703607 TGATTGTTGTTCTTGTTGTTGTTGTT 59.296 30.769 0.00 0.00 0.00 2.83
2188 4029 6.219473 TGATTGTTGTTCTTGTTGTTGTTGT 58.781 32.000 0.00 0.00 0.00 3.32
2189 4030 6.702972 TGATTGTTGTTCTTGTTGTTGTTG 57.297 33.333 0.00 0.00 0.00 3.33
2190 4031 7.721286 TTTGATTGTTGTTCTTGTTGTTGTT 57.279 28.000 0.00 0.00 0.00 2.83
2191 4032 7.721286 TTTTGATTGTTGTTCTTGTTGTTGT 57.279 28.000 0.00 0.00 0.00 3.32
2192 4033 7.265915 CGTTTTTGATTGTTGTTCTTGTTGTTG 59.734 33.333 0.00 0.00 0.00 3.33
2193 4034 7.287229 CGTTTTTGATTGTTGTTCTTGTTGTT 58.713 30.769 0.00 0.00 0.00 2.83
2194 4035 6.128688 CCGTTTTTGATTGTTGTTCTTGTTGT 60.129 34.615 0.00 0.00 0.00 3.32
2195 4036 6.128688 ACCGTTTTTGATTGTTGTTCTTGTTG 60.129 34.615 0.00 0.00 0.00 3.33
2196 4037 5.929415 ACCGTTTTTGATTGTTGTTCTTGTT 59.071 32.000 0.00 0.00 0.00 2.83
2197 4038 5.474825 ACCGTTTTTGATTGTTGTTCTTGT 58.525 33.333 0.00 0.00 0.00 3.16
2309 4152 2.151202 GACATCGACTTGCTTTTCCCA 58.849 47.619 0.00 0.00 0.00 4.37
2315 4158 2.350522 GACATGGACATCGACTTGCTT 58.649 47.619 0.00 0.00 0.00 3.91
2378 4222 2.434884 CATCGCGGGCAGTTGAGT 60.435 61.111 6.13 0.00 0.00 3.41
2618 4462 6.127196 TGACATATGTTGTACTGCTGGACATA 60.127 38.462 10.30 10.55 39.18 2.29
2633 4477 0.742990 CGGTGCCGGTGACATATGTT 60.743 55.000 10.30 0.00 35.56 2.71
2710 4555 2.563471 GAAGCTATCGACGAACTGGT 57.437 50.000 0.00 0.00 0.00 4.00
2741 4586 1.965414 TGGGGAAGCTGAGACCAATA 58.035 50.000 0.00 0.00 0.00 1.90
2742 4587 1.302907 ATGGGGAAGCTGAGACCAAT 58.697 50.000 4.12 0.00 34.45 3.16
2796 4641 2.433145 CTGCGCACAGTCGTCCAT 60.433 61.111 5.66 0.00 39.22 3.41
2803 4648 2.591715 GGTGGTTCTGCGCACAGT 60.592 61.111 5.66 0.00 44.77 3.55
2814 4659 1.228552 GAGCATGGTGGTGGTGGTT 60.229 57.895 0.00 0.00 0.00 3.67
2873 4721 1.074727 ACCACGTGGATGAATGGGAAA 59.925 47.619 40.21 0.00 38.94 3.13
2892 4740 3.387374 AGTCCAGACATCTGATGATCCAC 59.613 47.826 23.59 12.37 46.59 4.02
2915 4763 1.980772 GGGCATTGCTTCAGCTGGT 60.981 57.895 15.13 0.00 42.66 4.00
2939 4787 2.281345 CCCTCCATCGCAGCCATC 60.281 66.667 0.00 0.00 0.00 3.51
2946 4797 2.189499 GGAACATGCCCTCCATCGC 61.189 63.158 0.00 0.00 29.71 4.58
2952 4803 1.408822 CCTTAGGTGGAACATGCCCTC 60.409 57.143 6.33 2.97 44.52 4.30
2970 4821 2.572284 GCCGACGCTCTGTAACCT 59.428 61.111 0.00 0.00 0.00 3.50
2995 4846 1.953017 CCTCCTATCTCGTCGCCAG 59.047 63.158 0.00 0.00 0.00 4.85
3034 4885 1.691196 CTTGTGGTTTCTCTTGGCCA 58.309 50.000 0.00 0.00 0.00 5.36
3108 4959 0.810426 TAAATGTAATCGCCGCCGCA 60.810 50.000 0.00 0.00 34.03 5.69
3161 5012 9.255304 GAACAAATCTTGATCTAACTAGCTAGG 57.745 37.037 24.35 7.39 30.66 3.02
3200 5052 2.200373 AGGCTACACCATTTCACCAC 57.800 50.000 0.00 0.00 43.14 4.16
3212 5064 6.154534 AGTTCACATGACTACAATAGGCTACA 59.845 38.462 0.00 0.00 33.94 2.74
3217 5069 6.655003 ACCAAAGTTCACATGACTACAATAGG 59.345 38.462 0.00 0.00 0.00 2.57
3272 5124 5.043248 CCAAGTTCAGGAAAACAACACATC 58.957 41.667 0.00 0.00 0.00 3.06
3285 5139 0.245539 CCAGCATTGCCAAGTTCAGG 59.754 55.000 4.70 0.00 0.00 3.86
3296 5150 3.392882 TGAGCGTACATATCCAGCATTG 58.607 45.455 0.00 0.00 0.00 2.82
3383 5241 3.517602 CATGCGTACCACTTACTAAGCA 58.482 45.455 0.00 0.00 37.77 3.91
3478 5336 3.094498 ACCCTACCGCCCCAATCC 61.094 66.667 0.00 0.00 0.00 3.01
3538 5397 7.307989 CCCTACCATTTTCAATGTCGATGATAC 60.308 40.741 0.00 0.00 0.00 2.24
3569 5433 0.749649 TGTTGAAGGTGGCGCAAAAT 59.250 45.000 10.83 0.00 0.00 1.82
3572 5436 1.315981 TGTTGTTGAAGGTGGCGCAA 61.316 50.000 10.83 0.00 0.00 4.85
3575 5439 3.057596 ACATTATGTTGTTGAAGGTGGCG 60.058 43.478 0.00 0.00 0.00 5.69
3590 5454 3.260380 TGACTGCCCCCAAAAACATTATG 59.740 43.478 0.00 0.00 0.00 1.90
3607 5472 2.100584 GCTGACAGTAGGATCCTGACTG 59.899 54.545 30.16 30.16 44.98 3.51
3610 5475 1.064685 TCGCTGACAGTAGGATCCTGA 60.065 52.381 25.28 6.53 34.04 3.86
3628 5493 1.997606 GAAATGGTACCTCAACCGTCG 59.002 52.381 14.36 0.00 42.91 5.12
3634 5500 2.039216 TCGGCTTGAAATGGTACCTCAA 59.961 45.455 14.36 13.51 0.00 3.02
3654 5520 1.468736 CGACCAACTTAGTAGGCGGTC 60.469 57.143 10.06 10.06 40.64 4.79
3685 5551 2.094659 CCGACTCTTGCGTTGCGAT 61.095 57.895 0.00 0.00 0.00 4.58
3687 5553 4.430423 GCCGACTCTTGCGTTGCG 62.430 66.667 0.00 0.00 0.00 4.85
3695 5561 1.006102 CTCACAACCGCCGACTCTT 60.006 57.895 0.00 0.00 0.00 2.85
3719 5585 9.672673 TTTTGAACTTGGGAACATTTTAATTCA 57.327 25.926 0.00 0.00 42.32 2.57
3755 5622 9.199982 CATGAACTTTTATTTGAGAAGCATGTT 57.800 29.630 0.00 0.00 0.00 2.71
3826 5695 0.611896 AAGAAGGGGAAATGGCACCG 60.612 55.000 0.00 0.00 36.10 4.94
3873 5743 1.029681 AGTGTGAAAGGGTTTTCCGC 58.970 50.000 0.00 0.00 41.62 5.54
3874 5744 2.034179 GGAAGTGTGAAAGGGTTTTCCG 59.966 50.000 0.00 0.00 41.62 4.30
3877 5747 3.976015 TGAGGAAGTGTGAAAGGGTTTT 58.024 40.909 0.00 0.00 0.00 2.43
3880 5750 2.040412 GGATGAGGAAGTGTGAAAGGGT 59.960 50.000 0.00 0.00 0.00 4.34
3890 5760 1.045911 GGCGGAGAGGATGAGGAAGT 61.046 60.000 0.00 0.00 0.00 3.01
4020 5894 0.748005 ATTGGTGCATAGCCACGTCC 60.748 55.000 0.00 0.00 36.59 4.79
4045 5919 7.121168 ACCAAAACATATCTTACATGACCTGTG 59.879 37.037 0.00 0.00 38.92 3.66
4055 5929 8.958119 TCATGAGGTACCAAAACATATCTTAC 57.042 34.615 15.94 0.00 0.00 2.34
4057 5931 8.497745 AGATCATGAGGTACCAAAACATATCTT 58.502 33.333 15.94 0.00 0.00 2.40
4110 5984 1.812571 CATGTTTTTGTAGCCGCCTCT 59.187 47.619 0.00 0.00 0.00 3.69
4136 6012 9.730705 ATCTCATTTTGTGGTACATATGATAGG 57.269 33.333 10.38 0.00 44.52 2.57
4163 6039 6.688385 CGGTACATTAAATGCAACATCAAGAG 59.312 38.462 0.00 0.00 0.00 2.85
4175 6051 2.020720 TGCCAGCCGGTACATTAAATG 58.979 47.619 1.90 0.00 33.28 2.32
4182 6058 0.833949 TATGATTGCCAGCCGGTACA 59.166 50.000 1.90 0.00 33.28 2.90
4223 6099 3.438781 TGCGTCCCAAATATGAACAGAAC 59.561 43.478 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.