Multiple sequence alignment - TraesCS3D01G535400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G535400 chr3D 100.000 9313 0 0 1 9313 609618402 609627714 0.000000e+00 17198.0
1 TraesCS3D01G535400 chr3D 79.482 502 92 9 3743 4242 609908171 609908663 6.920000e-91 346.0
2 TraesCS3D01G535400 chr3D 92.982 57 3 1 23 79 65607327 65607272 2.160000e-11 82.4
3 TraesCS3D01G535400 chr3A 95.977 3281 103 15 4130 7394 743188279 743191546 0.000000e+00 5301.0
4 TraesCS3D01G535400 chr3A 90.681 3423 184 51 760 4131 743184916 743188254 0.000000e+00 4429.0
5 TraesCS3D01G535400 chr3A 86.556 1443 129 24 7873 9294 743192314 743193712 0.000000e+00 1530.0
6 TraesCS3D01G535400 chr3A 89.910 446 19 10 702 1137 743154744 743155173 1.370000e-152 551.0
7 TraesCS3D01G535400 chr3A 76.590 1038 152 43 1831 2787 739519540 739520567 3.910000e-133 486.0
8 TraesCS3D01G535400 chr3A 93.841 276 15 2 239 512 743154193 743154468 1.870000e-111 414.0
9 TraesCS3D01G535400 chr3A 89.416 274 24 4 269 539 743184145 743184416 3.220000e-89 340.0
10 TraesCS3D01G535400 chr3A 87.912 273 21 2 7396 7658 743191590 743191860 2.530000e-80 311.0
11 TraesCS3D01G535400 chr3A 90.960 177 8 1 79 247 743145444 743145620 2.020000e-56 231.0
12 TraesCS3D01G535400 chr3A 90.000 150 13 2 7686 7835 743191945 743192092 9.540000e-45 193.0
13 TraesCS3D01G535400 chr3A 92.308 78 5 1 113 190 430526429 430526505 9.890000e-20 110.0
14 TraesCS3D01G535400 chr3A 86.000 100 6 2 547 638 743154545 743154644 5.950000e-17 100.0
15 TraesCS3D01G535400 chr3A 86.000 100 6 2 547 638 743184531 743184630 5.950000e-17 100.0
16 TraesCS3D01G535400 chr3A 95.238 63 0 2 702 764 743184730 743184789 7.700000e-16 97.1
17 TraesCS3D01G535400 chr3B 91.824 3229 169 52 865 4057 820498062 820501231 0.000000e+00 4412.0
18 TraesCS3D01G535400 chr3B 95.551 2225 85 5 5520 7731 820792297 820794520 0.000000e+00 3548.0
19 TraesCS3D01G535400 chr3B 94.634 2143 89 5 5520 7654 820673078 820675202 0.000000e+00 3297.0
20 TraesCS3D01G535400 chr3B 95.336 2037 83 6 5591 7617 820502730 820504764 0.000000e+00 3225.0
21 TraesCS3D01G535400 chr3B 95.691 1346 47 9 4041 5380 820501378 820502718 0.000000e+00 2154.0
22 TraesCS3D01G535400 chr3B 92.967 1493 78 11 7835 9312 820598073 820599553 0.000000e+00 2150.0
23 TraesCS3D01G535400 chr3B 92.512 1469 91 8 7835 9293 820794810 820796269 0.000000e+00 2085.0
24 TraesCS3D01G535400 chr3B 92.204 1488 74 14 7835 9312 820760544 820761999 0.000000e+00 2067.0
25 TraesCS3D01G535400 chr3B 92.904 1367 66 12 7952 9312 820675595 820676936 0.000000e+00 1958.0
26 TraesCS3D01G535400 chr3B 89.352 864 62 20 7655 8497 820505049 820505903 0.000000e+00 1059.0
27 TraesCS3D01G535400 chr3B 94.135 682 28 3 6920 7590 820716308 820716988 0.000000e+00 1027.0
28 TraesCS3D01G535400 chr3B 94.646 635 28 2 8663 9293 820505983 820506615 0.000000e+00 979.0
29 TraesCS3D01G535400 chr3B 89.538 736 57 12 8565 9294 820717877 820718598 0.000000e+00 915.0
30 TraesCS3D01G535400 chr3B 94.356 567 23 5 8752 9312 820772041 820772604 0.000000e+00 861.0
31 TraesCS3D01G535400 chr3B 97.269 476 12 1 6920 7394 820596913 820597388 0.000000e+00 806.0
32 TraesCS3D01G535400 chr3B 89.950 597 29 9 7856 8445 820717287 820717859 0.000000e+00 741.0
33 TraesCS3D01G535400 chr3B 93.888 409 16 4 8910 9312 820554512 820554917 8.000000e-170 608.0
34 TraesCS3D01G535400 chr3B 91.736 363 30 0 8931 9293 820774027 820774389 1.080000e-138 505.0
35 TraesCS3D01G535400 chr3B 92.803 264 17 2 7396 7658 820597473 820597735 1.900000e-101 381.0
36 TraesCS3D01G535400 chr3B 88.530 279 17 11 863 1140 787283709 787283973 3.240000e-84 324.0
37 TraesCS3D01G535400 chr3B 88.785 214 16 4 8591 8804 820554189 820554394 1.200000e-63 255.0
38 TraesCS3D01G535400 chr3B 91.713 181 11 2 7655 7835 820597790 820597966 2.010000e-61 248.0
39 TraesCS3D01G535400 chr3B 87.745 204 19 4 8294 8497 820553959 820554156 5.620000e-57 233.0
40 TraesCS3D01G535400 chr3B 89.503 181 15 2 7655 7835 820675239 820675415 9.410000e-55 226.0
41 TraesCS3D01G535400 chr3B 91.391 151 13 0 992 1142 316008379 316008529 3.410000e-49 207.0
42 TraesCS3D01G535400 chr3B 89.032 155 11 3 7655 7809 820760152 820760300 4.440000e-43 187.0
43 TraesCS3D01G535400 chr3B 91.964 112 7 1 8607 8718 820771935 820772044 1.250000e-33 156.0
44 TraesCS3D01G535400 chr3B 95.181 83 4 0 7835 7917 820675508 820675590 2.110000e-26 132.0
45 TraesCS3D01G535400 chr3B 76.667 270 31 19 1434 1701 787284739 787284978 4.570000e-23 121.0
46 TraesCS3D01G535400 chr3B 97.619 42 1 0 8803 8844 820554471 820554512 1.300000e-08 73.1
47 TraesCS3D01G535400 chr3B 81.928 83 12 3 2951 3032 730934493 730934413 6.040000e-07 67.6
48 TraesCS3D01G535400 chr7B 90.853 1290 81 13 1609 2879 709220589 709219318 0.000000e+00 1694.0
49 TraesCS3D01G535400 chr7B 79.322 295 29 14 1170 1449 348043140 348043417 2.670000e-40 178.0
50 TraesCS3D01G535400 chr7B 89.231 65 4 3 16 79 479198294 479198356 2.790000e-10 78.7
51 TraesCS3D01G535400 chr6B 83.617 470 49 14 996 1452 272622526 272622072 5.200000e-112 416.0
52 TraesCS3D01G535400 chr5A 83.085 402 63 3 7952 8351 626250381 626249983 2.470000e-95 361.0
53 TraesCS3D01G535400 chr5A 93.506 77 5 0 114 190 673554634 673554710 2.130000e-21 115.0
54 TraesCS3D01G535400 chr4B 80.939 362 43 11 1003 1360 564133256 564133595 7.170000e-66 263.0
55 TraesCS3D01G535400 chr4B 95.139 144 7 0 999 1142 519741809 519741952 2.620000e-55 228.0
56 TraesCS3D01G535400 chr2B 96.528 144 5 0 999 1142 740290229 740290372 1.210000e-58 239.0
57 TraesCS3D01G535400 chr2B 81.081 222 26 10 1154 1369 104865166 104864955 7.480000e-36 163.0
58 TraesCS3D01G535400 chr2B 92.727 55 2 2 29 82 794900529 794900582 2.790000e-10 78.7
59 TraesCS3D01G535400 chr2D 91.057 123 11 0 3741 3863 80969859 80969981 5.780000e-37 167.0
60 TraesCS3D01G535400 chr2D 91.781 73 6 0 1297 1369 585741922 585741994 1.650000e-17 102.0
61 TraesCS3D01G535400 chr2D 97.872 47 1 0 33 79 458497461 458497507 2.160000e-11 82.4
62 TraesCS3D01G535400 chr5D 90.244 123 12 0 3741 3863 417632186 417632308 2.690000e-35 161.0
63 TraesCS3D01G535400 chr1D 88.889 126 14 0 6832 6957 453118382 453118257 1.250000e-33 156.0
64 TraesCS3D01G535400 chr1D 84.967 153 15 6 7088 7233 372871710 372871861 2.100000e-31 148.0
65 TraesCS3D01G535400 chr4A 78.041 296 28 20 1170 1447 665987660 665987384 1.620000e-32 152.0
66 TraesCS3D01G535400 chr5B 92.500 80 5 1 114 193 271145809 271145887 7.640000e-21 113.0
67 TraesCS3D01G535400 chr5B 88.889 63 3 4 18 79 591188211 591188270 3.610000e-09 75.0
68 TraesCS3D01G535400 chr1B 91.358 81 7 0 113 193 589766220 589766300 2.750000e-20 111.0
69 TraesCS3D01G535400 chr1B 90.123 81 8 0 113 193 589766298 589766218 1.280000e-18 106.0
70 TraesCS3D01G535400 chr1B 90.244 82 4 1 113 194 683479780 683479857 4.600000e-18 104.0
71 TraesCS3D01G535400 chr4D 90.476 84 6 1 113 194 484149210 484149293 9.890000e-20 110.0
72 TraesCS3D01G535400 chr4D 97.872 47 1 0 33 79 484742755 484742709 2.160000e-11 82.4
73 TraesCS3D01G535400 chr6D 89.286 84 9 0 114 197 309955299 309955216 1.280000e-18 106.0
74 TraesCS3D01G535400 chr6D 95.652 46 2 0 34 79 430139670 430139625 3.610000e-09 75.0
75 TraesCS3D01G535400 chr1A 97.872 47 1 0 33 79 21608704 21608750 2.160000e-11 82.4
76 TraesCS3D01G535400 chr2A 92.593 54 4 0 26 79 560782267 560782214 2.790000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G535400 chr3D 609618402 609627714 9312 False 17198.000000 17198 100.000000 1 9313 1 chr3D.!!$F1 9312
1 TraesCS3D01G535400 chr3A 743184145 743193712 9567 False 1537.637500 5301 90.222500 269 9294 8 chr3A.!!$F5 9025
2 TraesCS3D01G535400 chr3A 739519540 739520567 1027 False 486.000000 486 76.590000 1831 2787 1 chr3A.!!$F2 956
3 TraesCS3D01G535400 chr3A 743154193 743155173 980 False 355.000000 551 89.917000 239 1137 3 chr3A.!!$F4 898
4 TraesCS3D01G535400 chr3B 820792297 820796269 3972 False 2816.500000 3548 94.031500 5520 9293 2 chr3B.!!$F10 3773
5 TraesCS3D01G535400 chr3B 820498062 820506615 8553 False 2365.800000 4412 93.369800 865 9293 5 chr3B.!!$F3 8428
6 TraesCS3D01G535400 chr3B 820673078 820676936 3858 False 1403.250000 3297 93.055500 5520 9312 4 chr3B.!!$F6 3792
7 TraesCS3D01G535400 chr3B 820760152 820761999 1847 False 1127.000000 2067 90.618000 7655 9312 2 chr3B.!!$F8 1657
8 TraesCS3D01G535400 chr3B 820596913 820599553 2640 False 896.250000 2150 93.688000 6920 9312 4 chr3B.!!$F5 2392
9 TraesCS3D01G535400 chr3B 820716308 820718598 2290 False 894.333333 1027 91.207667 6920 9294 3 chr3B.!!$F7 2374
10 TraesCS3D01G535400 chr3B 820771935 820774389 2454 False 507.333333 861 92.685333 8607 9312 3 chr3B.!!$F9 705
11 TraesCS3D01G535400 chr3B 820553959 820554917 958 False 292.275000 608 92.009250 8294 9312 4 chr3B.!!$F4 1018
12 TraesCS3D01G535400 chr3B 787283709 787284978 1269 False 222.500000 324 82.598500 863 1701 2 chr3B.!!$F2 838
13 TraesCS3D01G535400 chr7B 709219318 709220589 1271 True 1694.000000 1694 90.853000 1609 2879 1 chr7B.!!$R1 1270

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
202 203 0.035343 GGGAGTACCAACCAGGAAGC 60.035 60.000 0.00 0.00 41.22 3.86 F
1246 1991 0.107606 TCTCCTCTCTTCTCGTCGGG 60.108 60.000 0.00 0.00 0.00 5.14 F
1466 2354 0.108585 TGGTGGGAGTTGCTTCAGTC 59.891 55.000 0.00 0.00 0.00 3.51 F
3099 4094 0.257039 GTGCAAGGGATCCATCACCT 59.743 55.000 15.23 0.00 35.78 4.00 F
4109 5267 0.684535 TCCGTGATGGCTTGAACTCA 59.315 50.000 0.00 0.00 37.80 3.41 F
4353 5538 1.743321 TTTTTGCCAAGACTGCCCCG 61.743 55.000 0.00 0.00 0.00 5.73 F
5510 6710 0.988145 CTGCCCCCTTCCTACATGGA 60.988 60.000 0.00 0.00 44.51 3.41 F
5733 6935 1.206878 TCAGGATGCCATGTGCTACT 58.793 50.000 7.54 1.53 42.00 2.57 F
6612 7814 1.211457 AGGAAGCTCCGCTGATTCATT 59.789 47.619 0.00 0.00 42.75 2.57 F
7430 8729 1.789464 GCAGTCGCATCGATTAGGAAG 59.211 52.381 0.00 0.00 38.42 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1685 2578 0.395586 TCAGGCCAAGTGTGTTGCTT 60.396 50.000 5.01 0.00 0.00 3.91 R
3099 4094 1.332375 GCCGCGCATTTCCTAACATAA 59.668 47.619 8.75 0.00 0.00 1.90 R
3231 4226 5.984926 GCAAAAACATGATCAGGTTTCAGAA 59.015 36.000 31.74 0.00 43.41 3.02 R
4117 5275 2.355756 AGTGCAAATGTCTGTGTGTGTC 59.644 45.455 0.00 0.00 0.00 3.67 R
5423 6623 0.756294 CCACCCGTAGATGGCATACA 59.244 55.000 0.00 0.00 0.00 2.29 R
6173 7375 0.506932 ACAAGAAACGTGCACGATCG 59.493 50.000 42.94 26.78 43.02 3.69 R
6719 7921 1.134159 GCCTCATCAAGCCATGACTCT 60.134 52.381 0.00 0.00 41.93 3.24 R
6999 8210 1.203038 TGATGTTTGGTCCATGCCACT 60.203 47.619 0.00 0.00 38.42 4.00 R
8019 10081 1.949465 AGGTTCTTGTCGGTGTTGTC 58.051 50.000 0.00 0.00 0.00 3.18 R
9008 11177 1.301401 CCCGGAACTGTTCGAGCAA 60.301 57.895 13.89 0.00 0.00 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 6.398234 TTTGGTACAACAGCAAACATATGT 57.602 33.333 1.41 1.41 46.80 2.29
33 34 6.810911 TTTGGTACAACAGCAAACATATGTT 58.189 32.000 15.47 15.47 46.80 2.71
34 35 6.398234 TGGTACAACAGCAAACATATGTTT 57.602 33.333 24.88 24.88 42.12 2.83
35 36 7.511959 TGGTACAACAGCAAACATATGTTTA 57.488 32.000 28.64 11.78 40.30 2.01
36 37 8.116651 TGGTACAACAGCAAACATATGTTTAT 57.883 30.769 28.64 19.21 40.30 1.40
37 38 8.580720 TGGTACAACAGCAAACATATGTTTATT 58.419 29.630 28.64 18.52 40.30 1.40
41 42 9.840427 ACAACAGCAAACATATGTTTATTACTC 57.160 29.630 28.64 15.33 45.54 2.59
42 43 9.289303 CAACAGCAAACATATGTTTATTACTCC 57.711 33.333 28.64 13.47 45.54 3.85
43 44 7.996385 ACAGCAAACATATGTTTATTACTCCC 58.004 34.615 28.64 12.39 45.54 4.30
44 45 7.834181 ACAGCAAACATATGTTTATTACTCCCT 59.166 33.333 28.64 13.96 45.54 4.20
45 46 8.345565 CAGCAAACATATGTTTATTACTCCCTC 58.654 37.037 28.64 10.89 45.54 4.30
46 47 7.502561 AGCAAACATATGTTTATTACTCCCTCC 59.497 37.037 28.64 9.16 45.54 4.30
47 48 7.519970 GCAAACATATGTTTATTACTCCCTCCG 60.520 40.741 28.64 15.09 45.54 4.63
48 49 6.742559 ACATATGTTTATTACTCCCTCCGT 57.257 37.500 1.41 0.00 0.00 4.69
49 50 7.133133 ACATATGTTTATTACTCCCTCCGTT 57.867 36.000 1.41 0.00 0.00 4.44
50 51 7.571025 ACATATGTTTATTACTCCCTCCGTTT 58.429 34.615 1.41 0.00 0.00 3.60
51 52 7.713942 ACATATGTTTATTACTCCCTCCGTTTC 59.286 37.037 1.41 0.00 0.00 2.78
52 53 5.486735 TGTTTATTACTCCCTCCGTTTCA 57.513 39.130 0.00 0.00 0.00 2.69
53 54 5.867330 TGTTTATTACTCCCTCCGTTTCAA 58.133 37.500 0.00 0.00 0.00 2.69
54 55 6.297582 TGTTTATTACTCCCTCCGTTTCAAA 58.702 36.000 0.00 0.00 0.00 2.69
55 56 6.943718 TGTTTATTACTCCCTCCGTTTCAAAT 59.056 34.615 0.00 0.00 0.00 2.32
56 57 7.449086 TGTTTATTACTCCCTCCGTTTCAAATT 59.551 33.333 0.00 0.00 0.00 1.82
57 58 8.949177 GTTTATTACTCCCTCCGTTTCAAATTA 58.051 33.333 0.00 0.00 0.00 1.40
58 59 6.997239 ATTACTCCCTCCGTTTCAAATTAC 57.003 37.500 0.00 0.00 0.00 1.89
59 60 4.635699 ACTCCCTCCGTTTCAAATTACT 57.364 40.909 0.00 0.00 0.00 2.24
60 61 4.576879 ACTCCCTCCGTTTCAAATTACTC 58.423 43.478 0.00 0.00 0.00 2.59
61 62 3.592059 TCCCTCCGTTTCAAATTACTCG 58.408 45.455 0.00 0.00 0.00 4.18
62 63 3.007182 TCCCTCCGTTTCAAATTACTCGT 59.993 43.478 0.00 0.00 0.00 4.18
63 64 3.370061 CCCTCCGTTTCAAATTACTCGTC 59.630 47.826 0.00 0.00 0.00 4.20
64 65 3.060363 CCTCCGTTTCAAATTACTCGTCG 59.940 47.826 0.00 0.00 0.00 5.12
65 66 3.641648 TCCGTTTCAAATTACTCGTCGT 58.358 40.909 0.00 0.00 0.00 4.34
66 67 3.426191 TCCGTTTCAAATTACTCGTCGTG 59.574 43.478 0.00 0.00 0.00 4.35
67 68 3.422603 CCGTTTCAAATTACTCGTCGTGG 60.423 47.826 0.00 0.00 0.00 4.94
68 69 3.182972 CGTTTCAAATTACTCGTCGTGGT 59.817 43.478 0.00 0.00 0.00 4.16
69 70 4.318263 CGTTTCAAATTACTCGTCGTGGTT 60.318 41.667 0.00 0.00 0.00 3.67
70 71 5.504392 GTTTCAAATTACTCGTCGTGGTTT 58.496 37.500 0.00 0.00 0.00 3.27
71 72 5.738118 TTCAAATTACTCGTCGTGGTTTT 57.262 34.783 0.00 0.00 0.00 2.43
72 73 6.841443 TTCAAATTACTCGTCGTGGTTTTA 57.159 33.333 0.00 0.00 0.00 1.52
73 74 6.456447 TCAAATTACTCGTCGTGGTTTTAG 57.544 37.500 0.00 0.00 0.00 1.85
74 75 5.984926 TCAAATTACTCGTCGTGGTTTTAGT 59.015 36.000 0.00 0.00 0.00 2.24
75 76 6.479660 TCAAATTACTCGTCGTGGTTTTAGTT 59.520 34.615 0.00 0.00 0.00 2.24
76 77 6.457851 AATTACTCGTCGTGGTTTTAGTTC 57.542 37.500 0.00 0.00 0.00 3.01
77 78 3.441496 ACTCGTCGTGGTTTTAGTTCA 57.559 42.857 0.00 0.00 0.00 3.18
78 79 3.784338 ACTCGTCGTGGTTTTAGTTCAA 58.216 40.909 0.00 0.00 0.00 2.69
79 80 4.374399 ACTCGTCGTGGTTTTAGTTCAAT 58.626 39.130 0.00 0.00 0.00 2.57
80 81 5.531634 ACTCGTCGTGGTTTTAGTTCAATA 58.468 37.500 0.00 0.00 0.00 1.90
81 82 5.403466 ACTCGTCGTGGTTTTAGTTCAATAC 59.597 40.000 0.00 0.00 0.00 1.89
82 83 5.288015 TCGTCGTGGTTTTAGTTCAATACA 58.712 37.500 0.00 0.00 0.00 2.29
83 84 5.752472 TCGTCGTGGTTTTAGTTCAATACAA 59.248 36.000 0.00 0.00 0.00 2.41
84 85 6.424509 TCGTCGTGGTTTTAGTTCAATACAAT 59.575 34.615 0.00 0.00 0.00 2.71
85 86 7.041916 TCGTCGTGGTTTTAGTTCAATACAATT 60.042 33.333 0.00 0.00 0.00 2.32
86 87 7.059033 CGTCGTGGTTTTAGTTCAATACAATTG 59.941 37.037 3.24 3.24 0.00 2.32
87 88 6.858993 TCGTGGTTTTAGTTCAATACAATTGC 59.141 34.615 5.05 0.00 0.00 3.56
88 89 6.088883 CGTGGTTTTAGTTCAATACAATTGCC 59.911 38.462 5.05 0.00 0.00 4.52
89 90 6.367695 GTGGTTTTAGTTCAATACAATTGCCC 59.632 38.462 5.05 0.00 0.00 5.36
90 91 5.575218 GGTTTTAGTTCAATACAATTGCCCG 59.425 40.000 5.05 0.00 0.00 6.13
91 92 4.974368 TTAGTTCAATACAATTGCCCGG 57.026 40.909 5.05 0.00 0.00 5.73
92 93 2.802719 AGTTCAATACAATTGCCCGGT 58.197 42.857 5.05 0.00 0.00 5.28
93 94 2.491693 AGTTCAATACAATTGCCCGGTG 59.508 45.455 5.05 0.00 0.00 4.94
94 95 2.490115 GTTCAATACAATTGCCCGGTGA 59.510 45.455 5.05 0.00 0.00 4.02
95 96 2.364632 TCAATACAATTGCCCGGTGAG 58.635 47.619 5.05 0.00 0.00 3.51
96 97 2.026729 TCAATACAATTGCCCGGTGAGA 60.027 45.455 5.05 0.00 0.00 3.27
97 98 2.038387 ATACAATTGCCCGGTGAGAC 57.962 50.000 5.05 0.00 0.00 3.36
98 99 0.687920 TACAATTGCCCGGTGAGACA 59.312 50.000 5.05 0.00 0.00 3.41
99 100 0.038166 ACAATTGCCCGGTGAGACAT 59.962 50.000 5.05 0.00 0.00 3.06
100 101 0.452987 CAATTGCCCGGTGAGACATG 59.547 55.000 0.00 0.00 0.00 3.21
101 102 1.315257 AATTGCCCGGTGAGACATGC 61.315 55.000 0.00 0.00 0.00 4.06
102 103 2.482796 ATTGCCCGGTGAGACATGCA 62.483 55.000 0.00 0.00 0.00 3.96
103 104 2.359850 GCCCGGTGAGACATGCAA 60.360 61.111 0.00 0.00 0.00 4.08
104 105 2.690778 GCCCGGTGAGACATGCAAC 61.691 63.158 0.00 0.00 0.00 4.17
105 106 1.003355 CCCGGTGAGACATGCAACT 60.003 57.895 0.00 0.00 0.00 3.16
106 107 0.606401 CCCGGTGAGACATGCAACTT 60.606 55.000 0.00 0.00 0.00 2.66
107 108 0.798776 CCGGTGAGACATGCAACTTC 59.201 55.000 0.00 0.00 0.00 3.01
108 109 1.511850 CGGTGAGACATGCAACTTCA 58.488 50.000 0.00 0.00 0.00 3.02
109 110 1.462283 CGGTGAGACATGCAACTTCAG 59.538 52.381 0.00 0.00 0.00 3.02
110 111 2.771089 GGTGAGACATGCAACTTCAGA 58.229 47.619 0.00 0.00 0.00 3.27
111 112 2.481952 GGTGAGACATGCAACTTCAGAC 59.518 50.000 0.00 0.00 0.00 3.51
112 113 2.156504 GTGAGACATGCAACTTCAGACG 59.843 50.000 0.00 0.00 0.00 4.18
113 114 2.224042 TGAGACATGCAACTTCAGACGT 60.224 45.455 0.00 0.00 0.00 4.34
114 115 3.005367 TGAGACATGCAACTTCAGACGTA 59.995 43.478 0.00 0.00 0.00 3.57
115 116 3.318017 AGACATGCAACTTCAGACGTAC 58.682 45.455 0.00 0.00 0.00 3.67
116 117 3.005897 AGACATGCAACTTCAGACGTACT 59.994 43.478 0.00 0.00 0.00 2.73
117 118 3.059884 ACATGCAACTTCAGACGTACTG 58.940 45.455 0.00 8.24 46.97 2.74
118 119 1.497991 TGCAACTTCAGACGTACTGC 58.502 50.000 9.34 0.00 45.38 4.40
119 120 0.790814 GCAACTTCAGACGTACTGCC 59.209 55.000 9.34 0.00 45.38 4.85
120 121 1.605712 GCAACTTCAGACGTACTGCCT 60.606 52.381 9.34 0.00 45.38 4.75
121 122 2.329379 CAACTTCAGACGTACTGCCTC 58.671 52.381 9.34 0.00 45.38 4.70
122 123 0.889306 ACTTCAGACGTACTGCCTCC 59.111 55.000 9.34 0.00 45.38 4.30
123 124 0.179161 CTTCAGACGTACTGCCTCCG 60.179 60.000 9.34 0.00 45.38 4.63
124 125 0.892358 TTCAGACGTACTGCCTCCGT 60.892 55.000 9.34 0.00 45.38 4.69
125 126 0.036105 TCAGACGTACTGCCTCCGTA 60.036 55.000 9.34 0.00 45.38 4.02
126 127 0.806868 CAGACGTACTGCCTCCGTAA 59.193 55.000 0.00 0.00 39.86 3.18
127 128 1.200716 CAGACGTACTGCCTCCGTAAA 59.799 52.381 0.00 0.00 39.86 2.01
128 129 1.200948 AGACGTACTGCCTCCGTAAAC 59.799 52.381 0.00 0.00 34.51 2.01
129 130 1.200948 GACGTACTGCCTCCGTAAACT 59.799 52.381 0.00 0.00 34.51 2.66
130 131 2.420022 GACGTACTGCCTCCGTAAACTA 59.580 50.000 0.00 0.00 34.51 2.24
131 132 2.819608 ACGTACTGCCTCCGTAAACTAA 59.180 45.455 0.00 0.00 32.22 2.24
132 133 3.445096 ACGTACTGCCTCCGTAAACTAAT 59.555 43.478 0.00 0.00 32.22 1.73
133 134 4.640201 ACGTACTGCCTCCGTAAACTAATA 59.360 41.667 0.00 0.00 32.22 0.98
134 135 5.300286 ACGTACTGCCTCCGTAAACTAATAT 59.700 40.000 0.00 0.00 32.22 1.28
135 136 6.486657 ACGTACTGCCTCCGTAAACTAATATA 59.513 38.462 0.00 0.00 32.22 0.86
136 137 7.013274 ACGTACTGCCTCCGTAAACTAATATAA 59.987 37.037 0.00 0.00 32.22 0.98
137 138 7.536622 CGTACTGCCTCCGTAAACTAATATAAG 59.463 40.741 0.00 0.00 0.00 1.73
138 139 7.592885 ACTGCCTCCGTAAACTAATATAAGA 57.407 36.000 0.00 0.00 0.00 2.10
139 140 7.659186 ACTGCCTCCGTAAACTAATATAAGAG 58.341 38.462 0.00 0.00 0.00 2.85
140 141 6.453092 TGCCTCCGTAAACTAATATAAGAGC 58.547 40.000 0.00 0.00 0.00 4.09
141 142 5.572126 GCCTCCGTAAACTAATATAAGAGCG 59.428 44.000 0.00 0.00 0.00 5.03
142 143 6.675987 CCTCCGTAAACTAATATAAGAGCGT 58.324 40.000 0.00 0.00 0.00 5.07
143 144 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
144 145 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
145 146 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
146 147 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
147 148 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
157 158 7.811117 ATAAGAGCGTTTAGATCACTACTCT 57.189 36.000 0.00 0.00 37.82 3.24
158 159 8.905660 ATAAGAGCGTTTAGATCACTACTCTA 57.094 34.615 0.00 0.00 37.82 2.43
159 160 7.627298 AAGAGCGTTTAGATCACTACTCTAA 57.373 36.000 0.00 0.00 37.82 2.10
160 161 7.254227 AGAGCGTTTAGATCACTACTCTAAG 57.746 40.000 0.00 0.00 37.82 2.18
161 162 5.823353 AGCGTTTAGATCACTACTCTAAGC 58.177 41.667 0.00 0.00 36.75 3.09
162 163 5.357314 AGCGTTTAGATCACTACTCTAAGCA 59.643 40.000 0.00 0.00 36.68 3.91
163 164 6.039941 AGCGTTTAGATCACTACTCTAAGCAT 59.960 38.462 0.00 0.00 36.68 3.79
164 165 6.697892 GCGTTTAGATCACTACTCTAAGCATT 59.302 38.462 0.00 0.00 36.68 3.56
165 166 7.096394 GCGTTTAGATCACTACTCTAAGCATTC 60.096 40.741 0.00 0.00 36.68 2.67
166 167 8.132362 CGTTTAGATCACTACTCTAAGCATTCT 58.868 37.037 0.00 0.00 36.68 2.40
167 168 9.810545 GTTTAGATCACTACTCTAAGCATTCTT 57.189 33.333 0.00 0.00 36.79 2.52
186 187 9.998106 GCATTCTTATATTAGTTTACAGAGGGA 57.002 33.333 0.00 0.00 0.00 4.20
192 193 9.940974 TTATATTAGTTTACAGAGGGAGTACCA 57.059 33.333 0.00 0.00 43.89 3.25
193 194 8.849543 ATATTAGTTTACAGAGGGAGTACCAA 57.150 34.615 0.00 0.00 43.89 3.67
194 195 4.886496 AGTTTACAGAGGGAGTACCAAC 57.114 45.455 0.00 0.00 43.89 3.77
195 196 3.581770 AGTTTACAGAGGGAGTACCAACC 59.418 47.826 0.00 0.00 43.89 3.77
196 197 3.263369 TTACAGAGGGAGTACCAACCA 57.737 47.619 0.00 0.00 43.89 3.67
197 198 1.645710 ACAGAGGGAGTACCAACCAG 58.354 55.000 0.00 0.00 43.89 4.00
198 199 0.905357 CAGAGGGAGTACCAACCAGG 59.095 60.000 0.00 0.00 43.89 4.45
199 200 0.790993 AGAGGGAGTACCAACCAGGA 59.209 55.000 0.00 0.00 43.89 3.86
200 201 1.151413 AGAGGGAGTACCAACCAGGAA 59.849 52.381 0.00 0.00 43.89 3.36
201 202 1.555533 GAGGGAGTACCAACCAGGAAG 59.444 57.143 0.00 0.00 43.89 3.46
202 203 0.035343 GGGAGTACCAACCAGGAAGC 60.035 60.000 0.00 0.00 41.22 3.86
203 204 0.690762 GGAGTACCAACCAGGAAGCA 59.309 55.000 0.00 0.00 41.22 3.91
204 205 1.073284 GGAGTACCAACCAGGAAGCAA 59.927 52.381 0.00 0.00 41.22 3.91
205 206 2.427506 GAGTACCAACCAGGAAGCAAG 58.572 52.381 0.00 0.00 41.22 4.01
206 207 0.881796 GTACCAACCAGGAAGCAAGC 59.118 55.000 0.00 0.00 41.22 4.01
207 208 0.476338 TACCAACCAGGAAGCAAGCA 59.524 50.000 0.00 0.00 41.22 3.91
208 209 0.396974 ACCAACCAGGAAGCAAGCAA 60.397 50.000 0.00 0.00 41.22 3.91
209 210 0.971386 CCAACCAGGAAGCAAGCAAT 59.029 50.000 0.00 0.00 41.22 3.56
210 211 1.337447 CCAACCAGGAAGCAAGCAATG 60.337 52.381 0.00 0.00 41.22 2.82
211 212 0.971386 AACCAGGAAGCAAGCAATGG 59.029 50.000 0.00 0.00 0.00 3.16
212 213 0.112995 ACCAGGAAGCAAGCAATGGA 59.887 50.000 0.00 0.00 0.00 3.41
213 214 0.815734 CCAGGAAGCAAGCAATGGAG 59.184 55.000 0.00 0.00 0.00 3.86
214 215 0.172803 CAGGAAGCAAGCAATGGAGC 59.827 55.000 0.00 0.00 0.00 4.70
215 216 1.138247 GGAAGCAAGCAATGGAGCG 59.862 57.895 0.00 0.00 40.15 5.03
216 217 1.138247 GAAGCAAGCAATGGAGCGG 59.862 57.895 0.00 0.00 40.15 5.52
217 218 1.303561 AAGCAAGCAATGGAGCGGA 60.304 52.632 0.00 0.00 40.15 5.54
218 219 0.895100 AAGCAAGCAATGGAGCGGAA 60.895 50.000 0.00 0.00 40.15 4.30
219 220 0.682209 AGCAAGCAATGGAGCGGAAT 60.682 50.000 0.00 0.00 40.15 3.01
220 221 0.248784 GCAAGCAATGGAGCGGAATC 60.249 55.000 0.00 0.00 40.15 2.52
221 222 0.383231 CAAGCAATGGAGCGGAATCC 59.617 55.000 0.00 0.00 40.15 3.01
222 223 0.257039 AAGCAATGGAGCGGAATCCT 59.743 50.000 0.00 0.00 40.29 3.24
223 224 0.179034 AGCAATGGAGCGGAATCCTC 60.179 55.000 0.00 0.00 40.29 3.71
224 225 0.179034 GCAATGGAGCGGAATCCTCT 60.179 55.000 0.00 0.00 40.29 3.69
225 226 1.876322 CAATGGAGCGGAATCCTCTC 58.124 55.000 10.67 10.67 40.29 3.20
226 227 1.139654 CAATGGAGCGGAATCCTCTCA 59.860 52.381 19.60 7.56 40.29 3.27
227 228 0.755686 ATGGAGCGGAATCCTCTCAC 59.244 55.000 19.60 10.33 40.29 3.51
228 229 1.330655 TGGAGCGGAATCCTCTCACC 61.331 60.000 19.60 5.91 40.29 4.02
229 230 1.045911 GGAGCGGAATCCTCTCACCT 61.046 60.000 19.60 0.00 36.35 4.00
230 231 1.693627 GAGCGGAATCCTCTCACCTA 58.306 55.000 13.95 0.00 0.00 3.08
231 232 2.032620 GAGCGGAATCCTCTCACCTAA 58.967 52.381 13.95 0.00 0.00 2.69
232 233 2.431057 GAGCGGAATCCTCTCACCTAAA 59.569 50.000 13.95 0.00 0.00 1.85
233 234 2.168728 AGCGGAATCCTCTCACCTAAAC 59.831 50.000 0.00 0.00 0.00 2.01
234 235 2.168728 GCGGAATCCTCTCACCTAAACT 59.831 50.000 0.00 0.00 0.00 2.66
235 236 3.383825 GCGGAATCCTCTCACCTAAACTA 59.616 47.826 0.00 0.00 0.00 2.24
236 237 4.039366 GCGGAATCCTCTCACCTAAACTAT 59.961 45.833 0.00 0.00 0.00 2.12
237 238 5.533482 CGGAATCCTCTCACCTAAACTATG 58.467 45.833 0.00 0.00 0.00 2.23
326 327 3.636764 GGACATCATTATCCACCAAACCC 59.363 47.826 0.00 0.00 34.87 4.11
361 363 3.743521 TGTATCCATCACATGCCTAAGC 58.256 45.455 0.00 0.00 40.48 3.09
457 462 0.679002 ATAGCTTGTGTGCCAGCTGG 60.679 55.000 29.34 29.34 38.19 4.85
654 794 2.184579 GCTACACTCACTCCGGCC 59.815 66.667 0.00 0.00 0.00 6.13
673 818 4.451150 GCCGCGATGTGGTGAGGA 62.451 66.667 8.23 0.00 35.34 3.71
682 827 2.122729 TGGTGAGGAGACCCTGGG 59.877 66.667 12.28 12.28 44.53 4.45
683 828 3.403558 GGTGAGGAGACCCTGGGC 61.404 72.222 14.08 5.80 44.53 5.36
684 829 3.775654 GTGAGGAGACCCTGGGCG 61.776 72.222 14.08 0.00 44.53 6.13
686 831 4.779733 GAGGAGACCCTGGGCGGA 62.780 72.222 14.08 0.00 44.53 5.54
687 832 4.787280 AGGAGACCCTGGGCGGAG 62.787 72.222 14.08 0.00 42.42 4.63
689 834 3.462678 GAGACCCTGGGCGGAGTC 61.463 72.222 14.08 1.91 34.83 3.36
697 842 2.069465 CTGGGCGGAGTCGAGAGATG 62.069 65.000 0.00 0.00 41.66 2.90
708 853 5.011125 GGAGTCGAGAGATGAATATCCCAAA 59.989 44.000 0.00 0.00 45.19 3.28
709 854 5.848406 AGTCGAGAGATGAATATCCCAAAC 58.152 41.667 0.00 0.00 45.19 2.93
909 1225 1.864559 AGACCACTCCCCTCCCTCT 60.865 63.158 0.00 0.00 0.00 3.69
910 1226 1.382009 GACCACTCCCCTCCCTCTC 60.382 68.421 0.00 0.00 0.00 3.20
984 1300 4.098654 CGAAGAGAGAGAGAGAGAGAGAGT 59.901 50.000 0.00 0.00 0.00 3.24
985 1301 5.350504 AAGAGAGAGAGAGAGAGAGAGTG 57.649 47.826 0.00 0.00 0.00 3.51
986 1302 3.708631 AGAGAGAGAGAGAGAGAGAGTGG 59.291 52.174 0.00 0.00 0.00 4.00
1246 1991 0.107606 TCTCCTCTCTTCTCGTCGGG 60.108 60.000 0.00 0.00 0.00 5.14
1260 2005 4.760047 CGGGTTCCGGCCACTGAG 62.760 72.222 2.24 0.00 44.15 3.35
1262 2007 4.329545 GGTTCCGGCCACTGAGCA 62.330 66.667 2.24 0.00 0.00 4.26
1265 2010 2.947532 TTCCGGCCACTGAGCAGAG 61.948 63.158 2.24 0.00 0.00 3.35
1268 2013 2.031516 CGGCCACTGAGCAGAGTTG 61.032 63.158 2.24 0.00 0.00 3.16
1269 2014 1.072159 GGCCACTGAGCAGAGTTGT 59.928 57.895 0.00 0.00 0.00 3.32
1271 2016 1.312815 GCCACTGAGCAGAGTTGTTT 58.687 50.000 4.21 0.00 0.00 2.83
1272 2017 2.494059 GCCACTGAGCAGAGTTGTTTA 58.506 47.619 4.21 0.00 0.00 2.01
1422 2184 3.249091 CCTCTGTTGTGATCTCAGTTCG 58.751 50.000 0.00 0.00 0.00 3.95
1456 2344 3.643792 GCTCAGTAGATTATGGTGGGAGT 59.356 47.826 0.00 0.00 0.00 3.85
1463 2351 3.266772 AGATTATGGTGGGAGTTGCTTCA 59.733 43.478 0.00 0.00 0.00 3.02
1465 2353 0.773644 ATGGTGGGAGTTGCTTCAGT 59.226 50.000 0.00 0.00 0.00 3.41
1466 2354 0.108585 TGGTGGGAGTTGCTTCAGTC 59.891 55.000 0.00 0.00 0.00 3.51
1505 2394 2.046285 CCCCGCCTGTGATTTGTCC 61.046 63.158 0.00 0.00 0.00 4.02
1528 2417 5.337571 CCAGACAGATTGTTGGAGCTAAGTA 60.338 44.000 0.00 0.00 33.40 2.24
1533 2422 4.164988 AGATTGTTGGAGCTAAGTAGGCAT 59.835 41.667 0.00 0.00 0.00 4.40
1558 2447 1.021968 ACACGCCTTCCTTTTGTCAC 58.978 50.000 0.00 0.00 0.00 3.67
1567 2456 5.415701 GCCTTCCTTTTGTCACTGAATCATA 59.584 40.000 0.00 0.00 0.00 2.15
1743 2636 7.621428 AGGAATGACATAAACTTGACATCTG 57.379 36.000 0.00 0.00 32.19 2.90
1744 2637 7.397221 AGGAATGACATAAACTTGACATCTGA 58.603 34.615 0.00 0.00 32.19 3.27
1745 2638 7.884877 AGGAATGACATAAACTTGACATCTGAA 59.115 33.333 0.00 0.00 32.19 3.02
1746 2639 7.965107 GGAATGACATAAACTTGACATCTGAAC 59.035 37.037 0.00 0.00 32.19 3.18
1747 2640 8.627208 AATGACATAAACTTGACATCTGAACT 57.373 30.769 0.00 0.00 32.19 3.01
1754 2647 4.892433 ACTTGACATCTGAACTGAAGAGG 58.108 43.478 0.00 0.00 0.00 3.69
1866 2764 0.539438 TGTCTCCCACATGGCCAAAC 60.539 55.000 10.96 0.00 0.00 2.93
1887 2787 1.233019 GCCACATATCTGCTTCGCAT 58.767 50.000 0.00 0.00 38.13 4.73
1895 2799 1.442769 TCTGCTTCGCATGGAAACTC 58.557 50.000 0.00 0.00 38.13 3.01
1959 2872 1.270305 TGCACGACCTCTTCTGGAAAG 60.270 52.381 0.00 0.00 0.00 2.62
2109 3046 1.668294 CAGTCAGCAGTCGGACCTT 59.332 57.895 4.14 0.00 38.01 3.50
2121 3058 1.079503 CGGACCTTAAAGCTCTGTGC 58.920 55.000 0.00 0.00 43.29 4.57
2138 3075 8.857098 AGCTCTGTGCAAATTATAATTCATCAT 58.143 29.630 11.08 0.00 45.94 2.45
2174 3111 0.550914 TATAAAGTGGCCAGCCCAGG 59.449 55.000 5.11 0.00 46.54 4.45
2235 3191 6.609533 CATATGCTATTGCCATGACTTTCTC 58.390 40.000 0.00 0.00 38.71 2.87
2354 3325 1.270550 GTTTGACCATTCTGGCCTGTG 59.729 52.381 3.32 0.00 42.67 3.66
2376 3347 7.045416 TGTGTGATTGTCTTTGTACTGTACTT 58.955 34.615 17.98 0.00 0.00 2.24
2429 3408 9.562583 TTTTTGTTGCGTATATTTTACCTGATC 57.437 29.630 0.00 0.00 0.00 2.92
2447 3426 6.480320 ACCTGATCGACATATTTTAAGCTCAC 59.520 38.462 0.00 0.00 0.00 3.51
2593 3575 7.930513 TTAGATGCTACTCAAACATATCACG 57.069 36.000 0.00 0.00 0.00 4.35
2620 3602 5.611796 TGCTAAACACTAGACATTTGCAG 57.388 39.130 0.00 0.00 0.00 4.41
2868 3863 5.043248 GGTCAACAAGTGGAGTTTTGAATG 58.957 41.667 0.00 0.00 0.00 2.67
2894 3889 7.983307 AGAATGTTATTTCTCTCTGTGATTGC 58.017 34.615 0.00 0.00 29.99 3.56
2899 3894 3.708403 TTCTCTCTGTGATTGCCATGT 57.292 42.857 0.00 0.00 0.00 3.21
2902 3897 2.676839 CTCTCTGTGATTGCCATGTGTC 59.323 50.000 0.00 0.00 0.00 3.67
2958 3953 6.459435 GGCAAAATGAAGCTCTCCTTTCTATC 60.459 42.308 0.00 0.00 32.78 2.08
2973 3968 9.618890 CTCCTTTCTATCAACATATTCCAGAAA 57.381 33.333 0.00 0.00 0.00 2.52
3099 4094 0.257039 GTGCAAGGGATCCATCACCT 59.743 55.000 15.23 0.00 35.78 4.00
3231 4226 6.426633 TGTGTTGATTGTCGACATTATGTCTT 59.573 34.615 20.80 3.23 44.85 3.01
3653 4648 4.097135 TCAGGAGCTTTTGATAGAGACGAG 59.903 45.833 0.00 0.00 0.00 4.18
3809 4804 1.271054 GCTCCAGCTGAGGAAGTGAAA 60.271 52.381 17.39 0.00 41.73 2.69
3842 4837 5.052481 GGCCCGATTTTATTTACTCTACGT 58.948 41.667 0.00 0.00 0.00 3.57
3870 4865 5.104569 TCTCCTGATGCAACATATGTGGTAA 60.105 40.000 9.63 0.00 0.00 2.85
3904 4899 4.431416 TTTGCCTTGTATCGTATCCCAT 57.569 40.909 0.00 0.00 0.00 4.00
3912 4907 7.174253 GCCTTGTATCGTATCCCATATTTCAAA 59.826 37.037 0.00 0.00 0.00 2.69
3982 4977 4.884458 TGCAATTACGTTGTGTCAGAAA 57.116 36.364 0.00 0.00 40.07 2.52
4072 5230 3.643763 CACTGTAGAGTGGTCAACTGTC 58.356 50.000 12.14 0.00 45.26 3.51
4098 5256 5.523552 TGCTTTGAGTTATGTATCCGTGATG 59.476 40.000 0.00 0.00 0.00 3.07
4109 5267 0.684535 TCCGTGATGGCTTGAACTCA 59.315 50.000 0.00 0.00 37.80 3.41
4117 5275 7.128331 CGTGATGGCTTGAACTCATATAAAAG 58.872 38.462 0.00 0.00 0.00 2.27
4127 5285 8.310406 TGAACTCATATAAAAGACACACACAG 57.690 34.615 0.00 0.00 0.00 3.66
4290 5475 3.412386 ACGCTGGTTTCTTATTGAGCTT 58.588 40.909 0.00 0.00 0.00 3.74
4353 5538 1.743321 TTTTTGCCAAGACTGCCCCG 61.743 55.000 0.00 0.00 0.00 5.73
4356 5541 2.058125 TTGCCAAGACTGCCCCGTTA 62.058 55.000 0.00 0.00 0.00 3.18
4363 5548 2.871453 AGACTGCCCCGTTATTGTTTT 58.129 42.857 0.00 0.00 0.00 2.43
4368 5553 3.223435 TGCCCCGTTATTGTTTTCTTCA 58.777 40.909 0.00 0.00 0.00 3.02
4373 5558 7.039270 GCCCCGTTATTGTTTTCTTCATATTT 58.961 34.615 0.00 0.00 0.00 1.40
4407 5592 3.641436 TCATATGTGCTTCAGACCCGTAT 59.359 43.478 1.90 0.00 0.00 3.06
4496 5681 8.866956 CATTCTTGAAGAATTTCAGGTATTTGC 58.133 33.333 17.22 0.00 41.90 3.68
4533 5719 7.573710 ACATATTCCCATAAAGTTGAGCTGTA 58.426 34.615 0.00 0.00 0.00 2.74
4616 5802 9.219603 CTCTTAAGGTAACAAAATCATCACTCA 57.780 33.333 1.85 0.00 41.41 3.41
4674 5860 5.937975 TTCCTGTGTCATACTGATGATGA 57.062 39.130 0.00 0.00 43.95 2.92
4710 5899 9.622004 GCTAAATACACCTTTAAAACCTTCTTC 57.378 33.333 0.00 0.00 0.00 2.87
4842 6033 8.150945 TGTGATCAAGGATTTCTAGTTATAGCC 58.849 37.037 0.00 0.00 0.00 3.93
4868 6060 6.375455 CCCTGACATTCTGCTTATGTACTTTT 59.625 38.462 0.00 0.00 36.41 2.27
5167 6364 6.628185 AGCCATCTTGTCAATCAAAGAAATC 58.372 36.000 0.00 0.00 35.48 2.17
5296 6493 5.948758 TGGGTAATGCATTCACTTGACATTA 59.051 36.000 16.86 0.00 33.31 1.90
5297 6494 6.606796 TGGGTAATGCATTCACTTGACATTAT 59.393 34.615 16.86 0.00 36.09 1.28
5298 6495 6.919662 GGGTAATGCATTCACTTGACATTATG 59.080 38.462 16.86 0.00 36.09 1.90
5423 6623 1.779221 CACATGGGTGGGTTATGCAT 58.221 50.000 3.79 3.79 41.45 3.96
5441 6641 2.416747 CATGTATGCCATCTACGGGTG 58.583 52.381 0.00 0.00 0.00 4.61
5486 6686 4.877378 ACAGAATGGTGTTGCATCAAAT 57.123 36.364 0.00 0.00 43.62 2.32
5510 6710 0.988145 CTGCCCCCTTCCTACATGGA 60.988 60.000 0.00 0.00 44.51 3.41
5531 6731 7.124573 TGGAATGTATGCTCTATTGTACAGT 57.875 36.000 0.00 0.00 31.35 3.55
5589 6789 3.715628 TTCCTTTGCTCTTGTTTCTGC 57.284 42.857 0.00 0.00 0.00 4.26
5598 6798 1.668751 TCTTGTTTCTGCGTTGGTGAC 59.331 47.619 0.00 0.00 0.00 3.67
5733 6935 1.206878 TCAGGATGCCATGTGCTACT 58.793 50.000 7.54 1.53 42.00 2.57
5937 7139 8.763601 AGATAGCTCCAGTTGTTCTTAAGTATT 58.236 33.333 1.63 0.00 0.00 1.89
5998 7200 4.880696 GCTTCAGATCCTAAATGCTTCTGT 59.119 41.667 0.00 0.00 36.17 3.41
6007 7209 6.115446 TCCTAAATGCTTCTGTGAAGGTATG 58.885 40.000 9.04 0.00 0.00 2.39
6065 7267 9.956720 CTTAAATGGAGATTGCTAATAGGTTTG 57.043 33.333 0.00 0.00 0.00 2.93
6098 7300 7.660617 CAGGTTATCATACATTCTGCAGAAGAT 59.339 37.037 31.14 26.83 37.48 2.40
6173 7375 4.273235 TGTGACATGAATTATGATGTCCGC 59.727 41.667 16.46 12.01 45.33 5.54
6275 7477 6.754193 AGATGTTATTAAGGAGCTAGCTGAC 58.246 40.000 24.99 14.98 0.00 3.51
6612 7814 1.211457 AGGAAGCTCCGCTGATTCATT 59.789 47.619 0.00 0.00 42.75 2.57
6719 7921 6.599244 CAGAATTAATGTCCAAGTCAGCCTTA 59.401 38.462 0.00 0.00 0.00 2.69
6853 8064 5.230942 GTTGTTAGATCCATCGGATAGTGG 58.769 45.833 0.00 0.00 43.27 4.00
6999 8210 1.944177 AGAGGCTTCTGGTAGCAAGA 58.056 50.000 0.00 0.00 43.02 3.02
7430 8729 1.789464 GCAGTCGCATCGATTAGGAAG 59.211 52.381 0.00 0.00 38.42 3.46
7720 9331 7.201767 GGAGTAAGCAAGTAGGAATACGTTCTA 60.202 40.741 0.00 0.00 34.68 2.10
7759 9463 8.601845 AATTCAGCCACTTAAACCAAAATAAC 57.398 30.769 0.00 0.00 0.00 1.89
7788 9492 4.768968 ACTTGTATTCTGCCAGCAAGAAAT 59.231 37.500 14.26 0.00 38.90 2.17
7789 9493 4.707030 TGTATTCTGCCAGCAAGAAATG 57.293 40.909 8.05 0.00 0.00 2.32
7918 9946 5.009510 CCCACAACATCACAAACTCATGTTA 59.990 40.000 0.00 0.00 38.43 2.41
7948 9983 7.816513 TGATCTGTTGACTATATGCTAATCTGC 59.183 37.037 0.00 0.00 0.00 4.26
8019 10081 2.094575 CAGACCGAAGAGAGTACAGACG 59.905 54.545 0.00 0.00 0.00 4.18
8348 10411 7.014092 TGATTTCTGCAAATTTGGTTCAAAC 57.986 32.000 19.47 1.87 36.13 2.93
8445 10509 7.266922 TGTTGTACATCTTTTTACCACCTTC 57.733 36.000 0.00 0.00 0.00 3.46
8770 10845 3.328505 CTTGGCACACAATGATTTTCCC 58.671 45.455 0.00 0.00 39.29 3.97
9161 11387 4.019321 TCCTCTTTGGTAAGGATGTCCAAG 60.019 45.833 1.30 0.00 41.34 3.61
9258 13291 5.953571 AGTTCTTGTTAAGGGTCTCCAATT 58.046 37.500 0.00 0.00 34.83 2.32
9294 13327 4.530553 TGTTAGTAAGCATCTCCAGTGGAA 59.469 41.667 14.17 4.93 0.00 3.53
9295 13328 3.902881 AGTAAGCATCTCCAGTGGAAG 57.097 47.619 14.17 7.75 0.00 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.020274 TGCTGTTGTACCAAAAGCTGAA 58.980 40.909 17.44 0.00 34.92 3.02
5 6 3.194542 TGTTTGCTGTTGTACCAAAAGCT 59.805 39.130 17.44 0.00 34.92 3.74
6 7 3.516615 TGTTTGCTGTTGTACCAAAAGC 58.483 40.909 11.36 11.36 31.11 3.51
7 8 6.922957 ACATATGTTTGCTGTTGTACCAAAAG 59.077 34.615 1.41 0.00 31.11 2.27
8 9 6.810911 ACATATGTTTGCTGTTGTACCAAAA 58.189 32.000 1.41 0.00 31.11 2.44
9 10 6.398234 ACATATGTTTGCTGTTGTACCAAA 57.602 33.333 1.41 0.00 0.00 3.28
10 11 6.398234 AACATATGTTTGCTGTTGTACCAA 57.602 33.333 15.47 0.00 33.93 3.67
11 12 6.398234 AAACATATGTTTGCTGTTGTACCA 57.602 33.333 28.59 0.00 45.55 3.25
12 13 8.980143 AATAAACATATGTTTGCTGTTGTACC 57.020 30.769 33.94 0.00 46.56 3.34
15 16 9.840427 GAGTAATAAACATATGTTTGCTGTTGT 57.160 29.630 33.94 17.58 46.56 3.32
16 17 9.289303 GGAGTAATAAACATATGTTTGCTGTTG 57.711 33.333 33.94 0.00 46.56 3.33
17 18 8.466798 GGGAGTAATAAACATATGTTTGCTGTT 58.533 33.333 33.94 25.02 46.56 3.16
18 19 7.834181 AGGGAGTAATAAACATATGTTTGCTGT 59.166 33.333 33.94 21.37 46.56 4.40
19 20 8.225603 AGGGAGTAATAAACATATGTTTGCTG 57.774 34.615 33.94 0.00 46.56 4.41
20 21 7.502561 GGAGGGAGTAATAAACATATGTTTGCT 59.497 37.037 33.94 25.97 46.56 3.91
21 22 7.519970 CGGAGGGAGTAATAAACATATGTTTGC 60.520 40.741 33.94 22.93 46.56 3.68
22 23 7.497909 ACGGAGGGAGTAATAAACATATGTTTG 59.502 37.037 33.94 19.31 46.56 2.93
24 25 7.133133 ACGGAGGGAGTAATAAACATATGTT 57.867 36.000 15.47 15.47 40.50 2.71
25 26 6.742559 ACGGAGGGAGTAATAAACATATGT 57.257 37.500 1.41 1.41 0.00 2.29
26 27 7.713507 TGAAACGGAGGGAGTAATAAACATATG 59.286 37.037 0.00 0.00 0.00 1.78
27 28 7.798071 TGAAACGGAGGGAGTAATAAACATAT 58.202 34.615 0.00 0.00 0.00 1.78
28 29 7.185318 TGAAACGGAGGGAGTAATAAACATA 57.815 36.000 0.00 0.00 0.00 2.29
29 30 6.057321 TGAAACGGAGGGAGTAATAAACAT 57.943 37.500 0.00 0.00 0.00 2.71
30 31 5.486735 TGAAACGGAGGGAGTAATAAACA 57.513 39.130 0.00 0.00 0.00 2.83
31 32 6.806388 TTTGAAACGGAGGGAGTAATAAAC 57.194 37.500 0.00 0.00 0.00 2.01
32 33 8.949177 GTAATTTGAAACGGAGGGAGTAATAAA 58.051 33.333 0.00 0.00 0.00 1.40
33 34 8.323567 AGTAATTTGAAACGGAGGGAGTAATAA 58.676 33.333 0.00 0.00 0.00 1.40
34 35 7.854337 AGTAATTTGAAACGGAGGGAGTAATA 58.146 34.615 0.00 0.00 0.00 0.98
35 36 6.718294 AGTAATTTGAAACGGAGGGAGTAAT 58.282 36.000 0.00 0.00 0.00 1.89
36 37 6.117975 AGTAATTTGAAACGGAGGGAGTAA 57.882 37.500 0.00 0.00 0.00 2.24
37 38 5.622914 CGAGTAATTTGAAACGGAGGGAGTA 60.623 44.000 0.00 0.00 0.00 2.59
38 39 4.576879 GAGTAATTTGAAACGGAGGGAGT 58.423 43.478 0.00 0.00 0.00 3.85
39 40 3.617263 CGAGTAATTTGAAACGGAGGGAG 59.383 47.826 0.00 0.00 0.00 4.30
40 41 3.007182 ACGAGTAATTTGAAACGGAGGGA 59.993 43.478 0.00 0.00 0.00 4.20
41 42 3.332034 ACGAGTAATTTGAAACGGAGGG 58.668 45.455 0.00 0.00 0.00 4.30
42 43 3.060363 CGACGAGTAATTTGAAACGGAGG 59.940 47.826 0.00 0.00 0.00 4.30
43 44 3.671928 ACGACGAGTAATTTGAAACGGAG 59.328 43.478 0.00 0.00 0.00 4.63
44 45 3.426191 CACGACGAGTAATTTGAAACGGA 59.574 43.478 0.00 0.00 0.00 4.69
45 46 3.422603 CCACGACGAGTAATTTGAAACGG 60.423 47.826 0.00 0.00 0.00 4.44
46 47 3.182972 ACCACGACGAGTAATTTGAAACG 59.817 43.478 0.00 0.00 0.00 3.60
47 48 4.720530 ACCACGACGAGTAATTTGAAAC 57.279 40.909 0.00 0.00 0.00 2.78
48 49 5.738118 AAACCACGACGAGTAATTTGAAA 57.262 34.783 0.00 0.00 0.00 2.69
49 50 5.738118 AAAACCACGACGAGTAATTTGAA 57.262 34.783 0.00 0.00 0.00 2.69
50 51 5.984926 ACTAAAACCACGACGAGTAATTTGA 59.015 36.000 0.00 0.00 0.00 2.69
51 52 6.219302 ACTAAAACCACGACGAGTAATTTG 57.781 37.500 0.00 2.39 0.00 2.32
52 53 6.479660 TGAACTAAAACCACGACGAGTAATTT 59.520 34.615 0.00 0.34 0.00 1.82
53 54 5.984926 TGAACTAAAACCACGACGAGTAATT 59.015 36.000 0.00 1.08 0.00 1.40
54 55 5.531634 TGAACTAAAACCACGACGAGTAAT 58.468 37.500 0.00 0.00 0.00 1.89
55 56 4.930963 TGAACTAAAACCACGACGAGTAA 58.069 39.130 0.00 0.00 0.00 2.24
56 57 4.566545 TGAACTAAAACCACGACGAGTA 57.433 40.909 0.00 0.00 0.00 2.59
57 58 3.441496 TGAACTAAAACCACGACGAGT 57.559 42.857 0.00 0.00 0.00 4.18
58 59 4.985044 ATTGAACTAAAACCACGACGAG 57.015 40.909 0.00 0.00 0.00 4.18
59 60 5.288015 TGTATTGAACTAAAACCACGACGA 58.712 37.500 0.00 0.00 0.00 4.20
60 61 5.579384 TGTATTGAACTAAAACCACGACG 57.421 39.130 0.00 0.00 0.00 5.12
61 62 7.149031 GCAATTGTATTGAACTAAAACCACGAC 60.149 37.037 7.40 0.00 0.00 4.34
62 63 6.858993 GCAATTGTATTGAACTAAAACCACGA 59.141 34.615 7.40 0.00 0.00 4.35
63 64 6.088883 GGCAATTGTATTGAACTAAAACCACG 59.911 38.462 7.40 0.00 0.00 4.94
64 65 6.367695 GGGCAATTGTATTGAACTAAAACCAC 59.632 38.462 7.40 0.00 0.00 4.16
65 66 6.459923 GGGCAATTGTATTGAACTAAAACCA 58.540 36.000 7.40 0.00 0.00 3.67
66 67 5.575218 CGGGCAATTGTATTGAACTAAAACC 59.425 40.000 7.40 0.00 0.00 3.27
67 68 5.575218 CCGGGCAATTGTATTGAACTAAAAC 59.425 40.000 7.40 0.00 0.00 2.43
68 69 5.244178 ACCGGGCAATTGTATTGAACTAAAA 59.756 36.000 6.32 0.00 0.00 1.52
69 70 4.767928 ACCGGGCAATTGTATTGAACTAAA 59.232 37.500 6.32 0.00 0.00 1.85
70 71 4.156922 CACCGGGCAATTGTATTGAACTAA 59.843 41.667 6.32 0.00 0.00 2.24
71 72 3.692101 CACCGGGCAATTGTATTGAACTA 59.308 43.478 6.32 0.00 0.00 2.24
72 73 2.491693 CACCGGGCAATTGTATTGAACT 59.508 45.455 6.32 0.00 0.00 3.01
73 74 2.490115 TCACCGGGCAATTGTATTGAAC 59.510 45.455 6.32 0.00 0.00 3.18
74 75 2.752354 CTCACCGGGCAATTGTATTGAA 59.248 45.455 6.32 0.00 0.00 2.69
75 76 2.026729 TCTCACCGGGCAATTGTATTGA 60.027 45.455 6.32 0.00 0.00 2.57
76 77 2.097466 GTCTCACCGGGCAATTGTATTG 59.903 50.000 6.32 0.00 0.00 1.90
77 78 2.290641 TGTCTCACCGGGCAATTGTATT 60.291 45.455 6.32 0.00 0.00 1.89
78 79 1.280710 TGTCTCACCGGGCAATTGTAT 59.719 47.619 6.32 0.00 0.00 2.29
79 80 0.687920 TGTCTCACCGGGCAATTGTA 59.312 50.000 6.32 0.00 0.00 2.41
80 81 0.038166 ATGTCTCACCGGGCAATTGT 59.962 50.000 6.32 0.00 0.00 2.71
81 82 0.452987 CATGTCTCACCGGGCAATTG 59.547 55.000 6.32 0.00 0.00 2.32
82 83 1.315257 GCATGTCTCACCGGGCAATT 61.315 55.000 6.32 0.00 0.00 2.32
83 84 1.750399 GCATGTCTCACCGGGCAAT 60.750 57.895 6.32 0.00 0.00 3.56
84 85 2.359850 GCATGTCTCACCGGGCAA 60.360 61.111 6.32 0.00 0.00 4.52
85 86 3.189376 TTGCATGTCTCACCGGGCA 62.189 57.895 6.32 0.00 0.00 5.36
86 87 2.359850 TTGCATGTCTCACCGGGC 60.360 61.111 6.32 0.00 0.00 6.13
87 88 0.606401 AAGTTGCATGTCTCACCGGG 60.606 55.000 6.32 0.00 0.00 5.73
88 89 0.798776 GAAGTTGCATGTCTCACCGG 59.201 55.000 0.00 0.00 0.00 5.28
89 90 1.462283 CTGAAGTTGCATGTCTCACCG 59.538 52.381 0.00 0.00 0.00 4.94
90 91 2.481952 GTCTGAAGTTGCATGTCTCACC 59.518 50.000 0.00 0.00 0.00 4.02
91 92 2.156504 CGTCTGAAGTTGCATGTCTCAC 59.843 50.000 0.00 0.00 0.00 3.51
92 93 2.224042 ACGTCTGAAGTTGCATGTCTCA 60.224 45.455 0.00 0.00 0.00 3.27
93 94 2.408050 ACGTCTGAAGTTGCATGTCTC 58.592 47.619 0.00 0.00 0.00 3.36
94 95 2.533266 ACGTCTGAAGTTGCATGTCT 57.467 45.000 0.00 0.00 0.00 3.41
95 96 3.121944 CAGTACGTCTGAAGTTGCATGTC 59.878 47.826 0.75 0.00 46.27 3.06
96 97 3.059884 CAGTACGTCTGAAGTTGCATGT 58.940 45.455 0.75 0.00 46.27 3.21
97 98 2.159787 GCAGTACGTCTGAAGTTGCATG 60.160 50.000 16.09 0.00 46.27 4.06
98 99 2.069273 GCAGTACGTCTGAAGTTGCAT 58.931 47.619 16.09 0.00 46.27 3.96
99 100 1.497991 GCAGTACGTCTGAAGTTGCA 58.502 50.000 16.09 0.00 46.27 4.08
100 101 0.790814 GGCAGTACGTCTGAAGTTGC 59.209 55.000 16.09 10.61 46.27 4.17
101 102 2.329379 GAGGCAGTACGTCTGAAGTTG 58.671 52.381 16.09 0.00 46.27 3.16
102 103 1.272769 GGAGGCAGTACGTCTGAAGTT 59.727 52.381 16.09 1.79 46.27 2.66
103 104 0.889306 GGAGGCAGTACGTCTGAAGT 59.111 55.000 16.09 1.21 46.27 3.01
104 105 0.179161 CGGAGGCAGTACGTCTGAAG 60.179 60.000 16.09 0.00 46.27 3.02
105 106 0.892358 ACGGAGGCAGTACGTCTGAA 60.892 55.000 16.09 0.00 46.27 3.02
106 107 0.036105 TACGGAGGCAGTACGTCTGA 60.036 55.000 16.09 0.00 46.27 3.27
107 108 0.806868 TTACGGAGGCAGTACGTCTG 59.193 55.000 0.00 0.26 46.12 3.51
108 109 1.200948 GTTTACGGAGGCAGTACGTCT 59.799 52.381 0.00 0.00 41.53 4.18
109 110 1.200948 AGTTTACGGAGGCAGTACGTC 59.799 52.381 0.00 0.00 41.53 4.34
110 111 1.251251 AGTTTACGGAGGCAGTACGT 58.749 50.000 0.80 0.80 43.88 3.57
111 112 3.492421 TTAGTTTACGGAGGCAGTACG 57.508 47.619 0.00 0.00 0.00 3.67
112 113 8.571336 TCTTATATTAGTTTACGGAGGCAGTAC 58.429 37.037 0.00 0.00 0.00 2.73
113 114 8.696043 TCTTATATTAGTTTACGGAGGCAGTA 57.304 34.615 0.00 0.00 0.00 2.74
114 115 7.592885 TCTTATATTAGTTTACGGAGGCAGT 57.407 36.000 0.00 0.00 0.00 4.40
115 116 6.586844 GCTCTTATATTAGTTTACGGAGGCAG 59.413 42.308 0.00 0.00 0.00 4.85
116 117 6.453092 GCTCTTATATTAGTTTACGGAGGCA 58.547 40.000 0.00 0.00 0.00 4.75
117 118 5.572126 CGCTCTTATATTAGTTTACGGAGGC 59.428 44.000 0.00 0.00 0.00 4.70
118 119 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
119 120 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
120 121 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
121 122 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
131 132 9.509956 AGAGTAGTGATCTAAACGCTCTTATAT 57.490 33.333 0.00 0.00 33.87 0.86
132 133 8.905660 AGAGTAGTGATCTAAACGCTCTTATA 57.094 34.615 0.00 0.00 33.87 0.98
133 134 7.811117 AGAGTAGTGATCTAAACGCTCTTAT 57.189 36.000 0.00 0.00 33.87 1.73
134 135 8.728337 TTAGAGTAGTGATCTAAACGCTCTTA 57.272 34.615 13.02 5.93 36.55 2.10
135 136 7.627298 TTAGAGTAGTGATCTAAACGCTCTT 57.373 36.000 13.02 3.85 36.55 2.85
136 137 6.238538 GCTTAGAGTAGTGATCTAAACGCTCT 60.239 42.308 12.65 12.65 38.46 4.09
137 138 5.910723 GCTTAGAGTAGTGATCTAAACGCTC 59.089 44.000 0.00 0.00 38.46 5.03
138 139 5.357314 TGCTTAGAGTAGTGATCTAAACGCT 59.643 40.000 0.00 0.00 38.46 5.07
139 140 5.579718 TGCTTAGAGTAGTGATCTAAACGC 58.420 41.667 0.00 0.00 38.46 4.84
140 141 8.132362 AGAATGCTTAGAGTAGTGATCTAAACG 58.868 37.037 0.00 0.00 38.46 3.60
141 142 9.810545 AAGAATGCTTAGAGTAGTGATCTAAAC 57.189 33.333 0.00 0.00 38.46 2.01
160 161 9.998106 TCCCTCTGTAAACTAATATAAGAATGC 57.002 33.333 0.00 0.00 0.00 3.56
166 167 9.940974 TGGTACTCCCTCTGTAAACTAATATAA 57.059 33.333 0.00 0.00 0.00 0.98
167 168 9.940974 TTGGTACTCCCTCTGTAAACTAATATA 57.059 33.333 0.00 0.00 0.00 0.86
168 169 8.702819 GTTGGTACTCCCTCTGTAAACTAATAT 58.297 37.037 0.00 0.00 0.00 1.28
169 170 7.124750 GGTTGGTACTCCCTCTGTAAACTAATA 59.875 40.741 0.00 0.00 0.00 0.98
170 171 6.070366 GGTTGGTACTCCCTCTGTAAACTAAT 60.070 42.308 0.00 0.00 0.00 1.73
171 172 5.246883 GGTTGGTACTCCCTCTGTAAACTAA 59.753 44.000 0.00 0.00 0.00 2.24
172 173 4.774200 GGTTGGTACTCCCTCTGTAAACTA 59.226 45.833 0.00 0.00 0.00 2.24
173 174 3.581770 GGTTGGTACTCCCTCTGTAAACT 59.418 47.826 0.00 0.00 0.00 2.66
174 175 3.325716 TGGTTGGTACTCCCTCTGTAAAC 59.674 47.826 0.00 0.00 0.00 2.01
175 176 3.581332 CTGGTTGGTACTCCCTCTGTAAA 59.419 47.826 0.00 0.00 0.00 2.01
176 177 3.170717 CTGGTTGGTACTCCCTCTGTAA 58.829 50.000 0.00 0.00 0.00 2.41
177 178 2.559026 CCTGGTTGGTACTCCCTCTGTA 60.559 54.545 0.00 0.00 0.00 2.74
178 179 1.645710 CTGGTTGGTACTCCCTCTGT 58.354 55.000 0.00 0.00 0.00 3.41
179 180 0.905357 CCTGGTTGGTACTCCCTCTG 59.095 60.000 0.00 0.00 0.00 3.35
180 181 0.790993 TCCTGGTTGGTACTCCCTCT 59.209 55.000 0.00 0.00 37.07 3.69
181 182 1.555533 CTTCCTGGTTGGTACTCCCTC 59.444 57.143 0.00 0.00 37.07 4.30
182 183 1.657804 CTTCCTGGTTGGTACTCCCT 58.342 55.000 0.00 0.00 37.07 4.20
183 184 0.035343 GCTTCCTGGTTGGTACTCCC 60.035 60.000 0.00 0.00 37.07 4.30
184 185 0.690762 TGCTTCCTGGTTGGTACTCC 59.309 55.000 0.00 0.00 37.07 3.85
185 186 2.427506 CTTGCTTCCTGGTTGGTACTC 58.572 52.381 0.00 0.00 37.07 2.59
186 187 1.545651 GCTTGCTTCCTGGTTGGTACT 60.546 52.381 0.00 0.00 37.07 2.73
187 188 0.881796 GCTTGCTTCCTGGTTGGTAC 59.118 55.000 0.00 0.00 37.07 3.34
188 189 0.476338 TGCTTGCTTCCTGGTTGGTA 59.524 50.000 0.00 0.00 37.07 3.25
189 190 0.396974 TTGCTTGCTTCCTGGTTGGT 60.397 50.000 0.00 0.00 37.07 3.67
190 191 0.971386 ATTGCTTGCTTCCTGGTTGG 59.029 50.000 0.00 0.00 37.10 3.77
191 192 1.337447 CCATTGCTTGCTTCCTGGTTG 60.337 52.381 0.00 0.00 0.00 3.77
192 193 0.971386 CCATTGCTTGCTTCCTGGTT 59.029 50.000 0.00 0.00 0.00 3.67
193 194 0.112995 TCCATTGCTTGCTTCCTGGT 59.887 50.000 0.00 0.00 0.00 4.00
194 195 0.815734 CTCCATTGCTTGCTTCCTGG 59.184 55.000 0.00 0.00 0.00 4.45
195 196 0.172803 GCTCCATTGCTTGCTTCCTG 59.827 55.000 0.00 0.00 0.00 3.86
196 197 1.310933 CGCTCCATTGCTTGCTTCCT 61.311 55.000 0.00 0.00 0.00 3.36
197 198 1.138247 CGCTCCATTGCTTGCTTCC 59.862 57.895 0.00 0.00 0.00 3.46
198 199 1.138247 CCGCTCCATTGCTTGCTTC 59.862 57.895 0.00 0.00 0.00 3.86
199 200 0.895100 TTCCGCTCCATTGCTTGCTT 60.895 50.000 0.00 0.00 0.00 3.91
200 201 0.682209 ATTCCGCTCCATTGCTTGCT 60.682 50.000 0.00 0.00 0.00 3.91
201 202 0.248784 GATTCCGCTCCATTGCTTGC 60.249 55.000 0.00 0.00 0.00 4.01
202 203 0.383231 GGATTCCGCTCCATTGCTTG 59.617 55.000 0.00 0.00 35.24 4.01
203 204 0.257039 AGGATTCCGCTCCATTGCTT 59.743 50.000 0.00 0.00 37.81 3.91
204 205 0.179034 GAGGATTCCGCTCCATTGCT 60.179 55.000 0.00 0.00 37.81 3.91
205 206 0.179034 AGAGGATTCCGCTCCATTGC 60.179 55.000 2.71 0.00 37.81 3.56
206 207 1.876322 GAGAGGATTCCGCTCCATTG 58.124 55.000 22.02 0.00 43.14 2.82
212 213 2.160721 TTAGGTGAGAGGATTCCGCT 57.839 50.000 8.88 8.88 36.09 5.52
213 214 2.168728 AGTTTAGGTGAGAGGATTCCGC 59.831 50.000 0.00 0.00 0.00 5.54
214 215 5.533482 CATAGTTTAGGTGAGAGGATTCCG 58.467 45.833 0.00 0.00 0.00 4.30
215 216 5.163301 TGCATAGTTTAGGTGAGAGGATTCC 60.163 44.000 0.00 0.00 0.00 3.01
216 217 5.918608 TGCATAGTTTAGGTGAGAGGATTC 58.081 41.667 0.00 0.00 0.00 2.52
217 218 5.957771 TGCATAGTTTAGGTGAGAGGATT 57.042 39.130 0.00 0.00 0.00 3.01
218 219 5.604231 TCATGCATAGTTTAGGTGAGAGGAT 59.396 40.000 0.00 0.00 0.00 3.24
219 220 4.962362 TCATGCATAGTTTAGGTGAGAGGA 59.038 41.667 0.00 0.00 0.00 3.71
220 221 5.282055 TCATGCATAGTTTAGGTGAGAGG 57.718 43.478 0.00 0.00 0.00 3.69
221 222 8.476657 CATATCATGCATAGTTTAGGTGAGAG 57.523 38.462 0.00 0.00 0.00 3.20
260 261 6.036408 ACATTCTTCTTTCTTTTTGCAGTTGC 59.964 34.615 0.00 0.00 42.50 4.17
296 297 7.122048 TGGTGGATAATGATGTCCAAATGTAA 58.878 34.615 1.88 0.00 46.92 2.41
298 299 5.517924 TGGTGGATAATGATGTCCAAATGT 58.482 37.500 1.88 0.00 46.92 2.71
374 376 6.378582 TCTTTCTATTCGGTGTGAATTTTGC 58.621 36.000 0.00 0.00 45.06 3.68
517 522 4.274421 CTGCATAGCATAGCATATGTGC 57.726 45.455 6.28 6.28 45.78 4.57
599 711 3.070987 ATCCCCCGAGCGTAGGAGT 62.071 63.158 4.76 0.00 0.00 3.85
625 745 2.237143 TGAGTGTAGCCTCCCAATCTTG 59.763 50.000 0.00 0.00 0.00 3.02
626 746 2.237392 GTGAGTGTAGCCTCCCAATCTT 59.763 50.000 0.00 0.00 0.00 2.40
658 798 1.517257 GTCTCCTCACCACATCGCG 60.517 63.158 0.00 0.00 0.00 5.87
664 809 2.294078 CCCAGGGTCTCCTCACCAC 61.294 68.421 0.00 0.00 42.67 4.16
682 827 3.426963 GGATATTCATCTCTCGACTCCGC 60.427 52.174 0.00 0.00 35.37 5.54
683 828 3.127895 GGGATATTCATCTCTCGACTCCG 59.872 52.174 0.00 0.00 37.07 4.63
684 829 4.082845 TGGGATATTCATCTCTCGACTCC 58.917 47.826 0.00 0.00 32.32 3.85
685 830 5.713792 TTGGGATATTCATCTCTCGACTC 57.286 43.478 0.00 0.00 32.32 3.36
686 831 5.600484 AGTTTGGGATATTCATCTCTCGACT 59.400 40.000 0.00 0.00 32.32 4.18
687 832 5.848406 AGTTTGGGATATTCATCTCTCGAC 58.152 41.667 0.00 0.00 32.32 4.20
688 833 6.485830 AAGTTTGGGATATTCATCTCTCGA 57.514 37.500 0.00 0.00 32.32 4.04
689 834 7.559590 AAAAGTTTGGGATATTCATCTCTCG 57.440 36.000 0.00 0.00 32.32 4.04
820 1115 2.111043 ACTTCACGTGTGGCCCAG 59.889 61.111 16.51 5.86 0.00 4.45
833 1128 4.329545 TGGAGTGGGCCGCACTTC 62.330 66.667 22.78 21.50 32.33 3.01
1246 1991 2.743928 CTGCTCAGTGGCCGGAAC 60.744 66.667 5.05 1.67 0.00 3.62
1254 1999 4.083110 CCCAATAAACAACTCTGCTCAGTG 60.083 45.833 0.00 0.00 0.00 3.66
1260 2005 1.135402 CCGCCCAATAAACAACTCTGC 60.135 52.381 0.00 0.00 0.00 4.26
1262 2007 1.173913 GCCGCCCAATAAACAACTCT 58.826 50.000 0.00 0.00 0.00 3.24
1265 2010 1.803922 GCGCCGCCCAATAAACAAC 60.804 57.895 0.00 0.00 0.00 3.32
1268 2013 2.102161 CTGCGCCGCCCAATAAAC 59.898 61.111 6.63 0.00 0.00 2.01
1269 2014 3.137459 CCTGCGCCGCCCAATAAA 61.137 61.111 6.63 0.00 0.00 1.40
1422 2184 1.340889 CTACTGAGCTCAGATCTGGCC 59.659 57.143 42.76 16.50 46.59 5.36
1456 2344 4.821260 TGCAAGTAAATCTGACTGAAGCAA 59.179 37.500 0.00 0.00 31.32 3.91
1463 2351 5.645497 GGAGACAATGCAAGTAAATCTGACT 59.355 40.000 0.00 0.00 0.00 3.41
1465 2353 4.943705 GGGAGACAATGCAAGTAAATCTGA 59.056 41.667 0.00 0.00 0.00 3.27
1466 2354 4.096984 GGGGAGACAATGCAAGTAAATCTG 59.903 45.833 0.00 0.00 0.00 2.90
1505 2394 4.573900 ACTTAGCTCCAACAATCTGTCTG 58.426 43.478 0.00 0.00 0.00 3.51
1533 2422 2.811431 CAAAAGGAAGGCGTGTATGTCA 59.189 45.455 0.00 0.00 0.00 3.58
1647 2539 6.735597 CTTCCGGGAAGTGGAATTTTCCTTT 61.736 44.000 25.48 5.38 44.18 3.11
1685 2578 0.395586 TCAGGCCAAGTGTGTTGCTT 60.396 50.000 5.01 0.00 0.00 3.91
1743 2636 3.003793 GGTTCAACTTGCCTCTTCAGTTC 59.996 47.826 0.00 0.00 0.00 3.01
1744 2637 2.952310 GGTTCAACTTGCCTCTTCAGTT 59.048 45.455 0.00 0.00 0.00 3.16
1745 2638 2.173569 AGGTTCAACTTGCCTCTTCAGT 59.826 45.455 0.00 0.00 0.00 3.41
1746 2639 2.856222 AGGTTCAACTTGCCTCTTCAG 58.144 47.619 0.00 0.00 0.00 3.02
1747 2640 4.431416 TTAGGTTCAACTTGCCTCTTCA 57.569 40.909 0.00 0.00 34.07 3.02
1754 2647 4.095036 GGCACTCTATTAGGTTCAACTTGC 59.905 45.833 0.00 0.00 0.00 4.01
1866 2764 2.229039 CGAAGCAGATATGTGGCGG 58.771 57.895 1.57 0.00 0.00 6.13
1887 2787 5.098663 ACTATTTAGGTGGAGGAGTTTCCA 58.901 41.667 0.00 0.00 44.84 3.53
1895 2799 5.897824 TGGTCTCTTACTATTTAGGTGGAGG 59.102 44.000 0.00 0.00 0.00 4.30
1946 2855 0.695347 ACCAGGCTTTCCAGAAGAGG 59.305 55.000 0.00 0.00 33.74 3.69
2066 2995 1.404315 GGTAAACTCTCAGGAGCACCG 60.404 57.143 0.00 0.00 42.98 4.94
2235 3191 5.546526 ACTTTCTACTGCAAGAGGAAGAAG 58.453 41.667 18.33 8.31 37.43 2.85
2320 3291 3.632604 TGGTCAAACGTGAGGCAATAAAA 59.367 39.130 0.00 0.00 33.27 1.52
2354 3325 7.652105 TCTGAAGTACAGTACAAAGACAATCAC 59.348 37.037 13.37 0.00 45.86 3.06
2376 3347 3.205282 TGATAGTCCCTGGTGAGATCTGA 59.795 47.826 0.00 0.00 0.00 3.27
2429 3408 8.407457 TGAAGTAGTGAGCTTAAAATATGTCG 57.593 34.615 0.00 0.00 0.00 4.35
2593 3575 2.688507 TGTCTAGTGTTTAGCAGCAGC 58.311 47.619 0.00 0.00 42.56 5.25
2620 3602 9.317936 TCAATACACTGTTCATCTGATTATGAC 57.682 33.333 0.00 0.00 35.63 3.06
2655 3638 1.953686 GCCTGCCTGTTGTAGAACAAA 59.046 47.619 6.91 0.00 41.62 2.83
2763 3758 6.646653 GGATGCATGTATTATTCGAGAACAGA 59.353 38.462 2.46 0.00 0.00 3.41
2803 3798 1.612463 GCCTGATCCATTGATCCTTGC 59.388 52.381 4.43 1.44 45.74 4.01
2821 3816 6.587608 CCAAGATTGAAACTTATGAAACAGCC 59.412 38.462 0.00 0.00 0.00 4.85
2894 3889 6.345723 GCAAGAAATTTTGTAACGACACATGG 60.346 38.462 0.00 0.00 34.48 3.66
2899 3894 7.114247 GCAATAGCAAGAAATTTTGTAACGACA 59.886 33.333 0.00 0.00 41.58 4.35
2902 3897 7.439490 CAGCAATAGCAAGAAATTTTGTAACG 58.561 34.615 0.00 0.00 45.49 3.18
2973 3968 6.542370 CCAACGGGTTTATGTCTGATAAATCT 59.458 38.462 0.00 0.00 0.00 2.40
3099 4094 1.332375 GCCGCGCATTTCCTAACATAA 59.668 47.619 8.75 0.00 0.00 1.90
3231 4226 5.984926 GCAAAAACATGATCAGGTTTCAGAA 59.015 36.000 31.74 0.00 43.41 3.02
3653 4648 6.319658 TGACAGATGGAAAGCTGAATTTATCC 59.680 38.462 0.00 0.00 36.07 2.59
3809 4804 5.675684 ATAAAATCGGGCCAACAATTCTT 57.324 34.783 4.39 0.00 0.00 2.52
3870 4865 9.950680 CGATACAAGGCAAAAATATGTAGAAAT 57.049 29.630 0.00 0.00 30.76 2.17
3886 4881 6.170506 TGAAATATGGGATACGATACAAGGC 58.829 40.000 0.00 0.00 40.28 4.35
3963 4958 7.132213 AGTTGATTTCTGACACAACGTAATTG 58.868 34.615 0.00 0.00 44.55 2.32
3969 4964 6.658831 ACATAAGTTGATTTCTGACACAACG 58.341 36.000 0.00 0.00 44.55 4.10
4072 5230 5.523552 TCACGGATACATAACTCAAAGCATG 59.476 40.000 0.00 0.00 0.00 4.06
4098 5256 7.094805 TGTGTGTCTTTTATATGAGTTCAAGCC 60.095 37.037 0.00 0.00 0.00 4.35
4109 5267 8.023128 GCAAATGTCTGTGTGTGTCTTTTATAT 58.977 33.333 0.00 0.00 0.00 0.86
4117 5275 2.355756 AGTGCAAATGTCTGTGTGTGTC 59.644 45.455 0.00 0.00 0.00 3.67
4127 5285 4.423732 ACAAAGTTGTGAGTGCAAATGTC 58.576 39.130 0.00 0.00 40.49 3.06
4407 5592 2.770164 GCTTCAAAGCCCTAGTCTGA 57.230 50.000 3.27 0.00 46.20 3.27
4496 5681 5.833406 TGGGAATATGTTGCACATACAAG 57.167 39.130 10.03 0.00 43.13 3.16
4616 5802 9.171877 TGGTTTTTGAAATTATTTTGCAAGAGT 57.828 25.926 0.00 0.00 0.00 3.24
4674 5860 6.720112 AAGGTGTATTTAGCATGCATGAAT 57.280 33.333 30.64 21.29 0.00 2.57
4808 5999 7.921041 AGAAATCCTTGATCACATAGGTAGA 57.079 36.000 10.98 0.00 0.00 2.59
4842 6033 3.287867 ACATAAGCAGAATGTCAGGGG 57.712 47.619 0.00 0.00 39.31 4.79
5070 6267 8.237811 AGACAATTCTGTAACAAGGTGAAAAT 57.762 30.769 0.00 0.00 35.30 1.82
5296 6493 8.692710 ACAACTGCTTTATCAAATGATCATCAT 58.307 29.630 9.06 0.00 39.09 2.45
5297 6494 8.058667 ACAACTGCTTTATCAAATGATCATCA 57.941 30.769 9.06 0.00 36.05 3.07
5423 6623 0.756294 CCACCCGTAGATGGCATACA 59.244 55.000 0.00 0.00 0.00 2.29
5438 6638 7.050970 TGATCTGAGTTGTATATGTACCACC 57.949 40.000 0.90 0.00 29.14 4.61
5468 6668 6.035650 CAGAATGATTTGATGCAACACCATTC 59.964 38.462 23.44 23.44 39.69 2.67
5486 6686 1.213296 GTAGGAAGGGGGCAGAATGA 58.787 55.000 0.00 0.00 39.69 2.57
5510 6710 9.481340 CATACACTGTACAATAGAGCATACATT 57.519 33.333 0.00 0.00 0.00 2.71
5531 6731 9.693739 AACAAGGTGATATATGAAAACCATACA 57.306 29.630 0.00 0.00 40.29 2.29
5598 6798 4.235079 TCACCATTCACTAGGGGAAATG 57.765 45.455 0.00 0.00 33.51 2.32
5652 6854 5.870706 TGAATGATACCACAGGTTGTACAA 58.129 37.500 3.59 3.59 37.09 2.41
5733 6935 7.789273 AAATCATGAAAACTGCATTCAAACA 57.211 28.000 0.00 0.00 39.98 2.83
5937 7139 1.818959 GCAGCAAAGGACCATGCCAA 61.819 55.000 16.23 0.00 43.57 4.52
5998 7200 7.347222 AGTTGGGACTTATGATACATACCTTCA 59.653 37.037 0.00 0.00 29.87 3.02
6098 7300 8.543774 ACTATCCTTTTGAATTCTTCTAGCTGA 58.456 33.333 7.05 0.00 0.00 4.26
6173 7375 0.506932 ACAAGAAACGTGCACGATCG 59.493 50.000 42.94 26.78 43.02 3.69
6263 7465 4.314121 CAAAGATATGGTCAGCTAGCTCC 58.686 47.826 16.15 15.02 0.00 4.70
6275 7477 5.073691 AGGTATCTTCCCACCAAAGATATGG 59.926 44.000 8.38 0.00 43.78 2.74
6428 7630 2.404559 ACACCTCTGGTTGGTTCTACA 58.595 47.619 0.00 0.00 35.28 2.74
6563 7765 5.800296 TCCTTTTGACGATGAAGGTTATGA 58.200 37.500 0.00 0.00 40.60 2.15
6612 7814 7.661437 GGCTTGATCTACATTACCATCATACAA 59.339 37.037 0.00 0.00 0.00 2.41
6719 7921 1.134159 GCCTCATCAAGCCATGACTCT 60.134 52.381 0.00 0.00 41.93 3.24
6853 8064 3.561725 GGCATATAGAACACTCAAGCCAC 59.438 47.826 0.00 0.00 39.35 5.01
6894 8105 4.330074 ACATACTAGCAAGCGTGATTTGAC 59.670 41.667 2.99 0.00 0.00 3.18
6895 8106 4.329801 CACATACTAGCAAGCGTGATTTGA 59.670 41.667 2.99 0.00 0.00 2.69
6999 8210 1.203038 TGATGTTTGGTCCATGCCACT 60.203 47.619 0.00 0.00 38.42 4.00
7430 8729 5.824904 ATTTGGCTTATGTGTCAGATCAC 57.175 39.130 0.00 0.00 38.63 3.06
7751 9455 9.334693 GCAGAATACAAGTCTCAAGTTATTTTG 57.665 33.333 0.00 0.00 0.00 2.44
7759 9463 3.373439 GCTGGCAGAATACAAGTCTCAAG 59.627 47.826 20.86 0.00 0.00 3.02
7788 9492 5.010314 ACGGTACTCATCTGTTAACAAGACA 59.990 40.000 10.03 0.00 0.00 3.41
7789 9493 5.467705 ACGGTACTCATCTGTTAACAAGAC 58.532 41.667 10.03 4.87 0.00 3.01
8019 10081 1.949465 AGGTTCTTGTCGGTGTTGTC 58.051 50.000 0.00 0.00 0.00 3.18
8348 10411 6.715344 TTTACAGTATCCACAAAAGTAGCG 57.285 37.500 0.00 0.00 0.00 4.26
8476 10540 4.329462 TGCCACCAGTTTACCAAAAATC 57.671 40.909 0.00 0.00 0.00 2.17
8477 10541 4.702831 CTTGCCACCAGTTTACCAAAAAT 58.297 39.130 0.00 0.00 0.00 1.82
8665 10735 8.635765 ACTGGATTTATCAACTGTACAATGTT 57.364 30.769 0.00 0.00 0.00 2.71
8695 10768 5.503927 AGCCATTAATCCCTGCTGTATATG 58.496 41.667 0.00 0.00 0.00 1.78
9008 11177 1.301401 CCCGGAACTGTTCGAGCAA 60.301 57.895 13.89 0.00 0.00 3.91
9101 11270 3.736433 CGACAGCCTTCGATCAAGATTCT 60.736 47.826 0.00 0.00 41.78 2.40
9104 11273 1.478510 ACGACAGCCTTCGATCAAGAT 59.521 47.619 11.28 0.00 41.78 2.40
9161 11387 2.814336 CCTTACCAAGAACTTGCCAGAC 59.186 50.000 8.81 0.00 39.16 3.51
9258 13291 4.558496 GCTTACTAACAACTTGGCATTGCA 60.558 41.667 11.39 0.00 0.00 4.08
9294 13327 3.733709 CCAAGAACTTCCCACTGCT 57.266 52.632 0.00 0.00 0.00 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.