Multiple sequence alignment - TraesCS3D01G535200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G535200 chr3D 100.000 4720 0 0 1 4720 609611100 609606381 0.000000e+00 8717.0
1 TraesCS3D01G535200 chr3D 80.236 764 96 27 3260 3993 609582599 609581861 1.500000e-144 523.0
2 TraesCS3D01G535200 chr3D 83.333 180 27 2 2930 3107 609574524 609574702 3.780000e-36 163.0
3 TraesCS3D01G535200 chr3D 96.629 89 3 0 4582 4670 180394995 180394907 1.060000e-31 148.0
4 TraesCS3D01G535200 chr3D 94.737 95 4 1 4577 4670 121985633 121985539 3.810000e-31 147.0
5 TraesCS3D01G535200 chr3A 90.518 3955 231 72 284 4173 743131942 743128067 0.000000e+00 5094.0
6 TraesCS3D01G535200 chr3A 84.086 421 39 14 1316 1723 569877572 569877167 9.580000e-102 381.0
7 TraesCS3D01G535200 chr3A 83.415 410 40 13 1327 1723 376081576 376081182 5.810000e-94 355.0
8 TraesCS3D01G535200 chr3A 87.649 251 29 1 4264 4514 102268664 102268416 1.660000e-74 291.0
9 TraesCS3D01G535200 chr3A 88.095 84 9 1 1141 1224 376081729 376081647 1.080000e-16 99.0
10 TraesCS3D01G535200 chr3B 87.788 2473 192 41 839 3259 820466409 820463995 0.000000e+00 2793.0
11 TraesCS3D01G535200 chr3B 88.161 473 40 10 3345 3808 820463967 820463502 2.480000e-152 549.0
12 TraesCS3D01G535200 chr3B 87.795 254 29 2 4264 4516 749149628 749149376 3.570000e-76 296.0
13 TraesCS3D01G535200 chr3B 85.507 276 25 14 3617 3886 820430221 820429955 1.670000e-69 274.0
14 TraesCS3D01G535200 chr3B 78.531 354 56 14 431 770 549666362 549666015 1.030000e-51 215.0
15 TraesCS3D01G535200 chr3B 92.708 96 7 0 4578 4673 526495802 526495897 6.370000e-29 139.0
16 TraesCS3D01G535200 chr3B 78.065 155 28 5 413 564 512518493 512518342 5.030000e-15 93.5
17 TraesCS3D01G535200 chr7A 85.942 626 62 12 1425 2048 182095707 182095106 0.000000e+00 645.0
18 TraesCS3D01G535200 chr7A 90.840 262 18 2 4258 4513 729580338 729580077 3.500000e-91 346.0
19 TraesCS3D01G535200 chr7A 89.326 178 9 3 1546 1723 7052167 7052334 1.030000e-51 215.0
20 TraesCS3D01G535200 chr7A 87.778 90 7 4 1141 1229 705102191 705102105 8.360000e-18 102.0
21 TraesCS3D01G535200 chr7A 90.625 64 6 0 1316 1379 705102049 705101986 8.420000e-13 86.1
22 TraesCS3D01G535200 chr2A 83.613 714 80 21 1336 2045 21408010 21408690 1.850000e-178 636.0
23 TraesCS3D01G535200 chr2A 84.086 421 38 13 1316 1723 378209347 378208943 3.450000e-101 379.0
24 TraesCS3D01G535200 chr2A 87.649 251 31 0 4263 4513 398652016 398651766 4.620000e-75 292.0
25 TraesCS3D01G535200 chr2A 87.649 251 31 0 4263 4513 398689764 398690014 4.620000e-75 292.0
26 TraesCS3D01G535200 chr2A 92.000 100 5 3 4572 4669 156525781 156525683 2.290000e-28 137.0
27 TraesCS3D01G535200 chr1D 81.072 597 50 32 1141 1723 415845751 415845204 7.310000e-113 418.0
28 TraesCS3D01G535200 chr2D 84.798 421 36 12 1316 1723 465338909 465339314 9.520000e-107 398.0
29 TraesCS3D01G535200 chr2D 81.105 561 43 33 1141 1687 104592005 104592516 1.590000e-104 390.0
30 TraesCS3D01G535200 chr2D 90.385 104 10 0 4569 4672 627925558 627925661 2.290000e-28 137.0
31 TraesCS3D01G535200 chr2D 75.633 316 53 15 484 795 114141483 114141778 8.240000e-28 135.0
32 TraesCS3D01G535200 chr2D 91.176 102 6 3 4574 4674 622355878 622355977 8.240000e-28 135.0
33 TraesCS3D01G535200 chr6A 84.561 421 36 12 1316 1723 65634227 65633823 1.590000e-104 390.0
34 TraesCS3D01G535200 chr6A 84.112 107 12 2 430 531 494361400 494361506 1.080000e-16 99.0
35 TraesCS3D01G535200 chr5A 84.337 415 37 8 1316 1717 607324267 607324666 9.580000e-102 381.0
36 TraesCS3D01G535200 chr5A 85.500 200 25 3 1025 1224 33312828 33312633 6.190000e-49 206.0
37 TraesCS3D01G535200 chr5A 82.857 105 14 3 466 570 699490830 699490930 1.810000e-14 91.6
38 TraesCS3D01G535200 chr5A 92.105 38 1 2 685 722 7834091 7834126 9.000000e-03 52.8
39 TraesCS3D01G535200 chr7D 92.509 267 13 3 4254 4513 636699432 636699698 4.460000e-100 375.0
40 TraesCS3D01G535200 chr2B 83.610 421 41 9 1316 1723 137368807 137368402 2.070000e-98 370.0
41 TraesCS3D01G535200 chr2B 82.051 117 16 4 412 523 25219807 25219691 1.400000e-15 95.3
42 TraesCS3D01G535200 chr4A 82.898 421 44 12 1316 1723 673649703 673649298 2.090000e-93 353.0
43 TraesCS3D01G535200 chr4A 89.683 252 22 4 4263 4514 12399779 12399532 7.620000e-83 318.0
44 TraesCS3D01G535200 chr4A 87.891 256 25 5 4264 4514 552815741 552815995 3.570000e-76 296.0
45 TraesCS3D01G535200 chr1B 87.209 258 28 2 4263 4515 683092796 683092539 5.980000e-74 289.0
46 TraesCS3D01G535200 chr1B 79.275 193 26 10 467 647 346163050 346163240 6.410000e-24 122.0
47 TraesCS3D01G535200 chr1B 97.143 35 0 1 768 801 192700114 192700148 1.830000e-04 58.4
48 TraesCS3D01G535200 chr6B 82.550 298 34 7 1316 1600 504877525 504877233 3.650000e-61 246.0
49 TraesCS3D01G535200 chr6B 82.308 130 19 4 428 557 651012111 651011986 4.990000e-20 110.0
50 TraesCS3D01G535200 chr6B 100.000 29 0 0 773 801 76856355 76856383 2.000000e-03 54.7
51 TraesCS3D01G535200 chr1A 87.379 206 22 2 1016 1221 191560432 191560633 2.840000e-57 233.0
52 TraesCS3D01G535200 chr1A 84.211 209 29 2 1016 1224 46481883 46481679 2.880000e-47 200.0
53 TraesCS3D01G535200 chr7B 85.922 206 25 2 1016 1221 614365306 614365507 2.860000e-52 217.0
54 TraesCS3D01G535200 chr5D 95.604 91 4 0 4579 4669 66745388 66745478 3.810000e-31 147.0
55 TraesCS3D01G535200 chr5D 87.931 58 6 1 473 530 119252423 119252367 3.050000e-07 67.6
56 TraesCS3D01G535200 chrUn 89.286 112 11 1 1113 1224 62127273 62127163 6.370000e-29 139.0
57 TraesCS3D01G535200 chr6D 92.000 100 7 1 4583 4681 387886076 387885977 6.370000e-29 139.0
58 TraesCS3D01G535200 chr6D 74.757 309 58 14 428 723 34307331 34307632 2.310000e-23 121.0
59 TraesCS3D01G535200 chr4B 92.000 100 6 1 4570 4669 653488549 653488452 6.370000e-29 139.0
60 TraesCS3D01G535200 chr5B 90.566 53 5 0 478 530 131713773 131713721 2.360000e-08 71.3
61 TraesCS3D01G535200 chr5B 89.362 47 5 0 465 511 654948307 654948261 5.100000e-05 60.2
62 TraesCS3D01G535200 chr4D 100.000 31 0 0 773 803 368477553 368477583 1.830000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G535200 chr3D 609606381 609611100 4719 True 8717 8717 100.0000 1 4720 1 chr3D.!!$R4 4719
1 TraesCS3D01G535200 chr3D 609581861 609582599 738 True 523 523 80.2360 3260 3993 1 chr3D.!!$R3 733
2 TraesCS3D01G535200 chr3A 743128067 743131942 3875 True 5094 5094 90.5180 284 4173 1 chr3A.!!$R3 3889
3 TraesCS3D01G535200 chr3A 376081182 376081729 547 True 227 355 85.7550 1141 1723 2 chr3A.!!$R4 582
4 TraesCS3D01G535200 chr3B 820463502 820466409 2907 True 1671 2793 87.9745 839 3808 2 chr3B.!!$R5 2969
5 TraesCS3D01G535200 chr7A 182095106 182095707 601 True 645 645 85.9420 1425 2048 1 chr7A.!!$R1 623
6 TraesCS3D01G535200 chr2A 21408010 21408690 680 False 636 636 83.6130 1336 2045 1 chr2A.!!$F1 709
7 TraesCS3D01G535200 chr1D 415845204 415845751 547 True 418 418 81.0720 1141 1723 1 chr1D.!!$R1 582
8 TraesCS3D01G535200 chr2D 104592005 104592516 511 False 390 390 81.1050 1141 1687 1 chr2D.!!$F1 546

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
387 389 0.030705 TTCTGGGCCTGGATCTAGCT 60.031 55.0 10.79 0.0 0.00 3.32 F
609 620 0.038618 GCCTAAAAACAGCCCAACCG 60.039 55.0 0.00 0.0 0.00 4.44 F
822 833 0.039180 TCTCAACCCACGCTCTAGGA 59.961 55.0 0.00 0.0 0.00 2.94 F
1226 1255 0.832983 TTCCTCTTCCGTTCGGGGAA 60.833 55.0 11.37 12.3 43.66 3.97 F
2901 2981 0.403271 GTATGATGGGAGGCTGGCAT 59.597 55.0 3.38 0.0 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1400 1447 0.108138 ATCGTAGTGCAGCCCAAGTC 60.108 55.000 0.0 0.0 0.0 3.01 R
1432 1484 1.030457 CCAGCCCTTTCATCAGCATC 58.970 55.000 0.0 0.0 0.0 3.91 R
2665 2738 0.546122 ATACCTTTGATGCCAGCCGA 59.454 50.000 0.0 0.0 0.0 5.54 R
3114 3195 3.829886 TGGCATTTCTTTCAGTTAGCG 57.170 42.857 0.0 0.0 0.0 4.26 R
4501 4629 0.115745 TGAAGAAGTACCCCCTCCGT 59.884 55.000 0.0 0.0 0.0 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 84 6.956299 AAGAAACATGAAGCATAATTGTGC 57.044 33.333 18.52 18.52 45.38 4.57
98 99 9.493206 GCATAATTGTGCTTTTCCATATTTTTG 57.507 29.630 18.85 0.00 41.82 2.44
101 102 8.674263 AATTGTGCTTTTCCATATTTTTGTGA 57.326 26.923 0.00 0.00 0.00 3.58
102 103 8.674263 ATTGTGCTTTTCCATATTTTTGTGAA 57.326 26.923 0.00 0.00 0.00 3.18
103 104 7.712264 TGTGCTTTTCCATATTTTTGTGAAG 57.288 32.000 0.00 0.00 0.00 3.02
104 105 6.202570 TGTGCTTTTCCATATTTTTGTGAAGC 59.797 34.615 0.00 0.00 37.92 3.86
105 106 6.202570 GTGCTTTTCCATATTTTTGTGAAGCA 59.797 34.615 0.00 0.00 43.01 3.91
106 107 6.202570 TGCTTTTCCATATTTTTGTGAAGCAC 59.797 34.615 0.00 0.00 41.15 4.40
107 108 6.202570 GCTTTTCCATATTTTTGTGAAGCACA 59.797 34.615 0.00 0.00 43.02 4.57
121 122 4.595629 CACAACTGTGCTTCACGC 57.404 55.556 0.00 0.00 39.39 5.34
122 123 1.368019 CACAACTGTGCTTCACGCG 60.368 57.895 3.53 3.53 43.27 6.01
133 134 3.041351 TCACGCGCGCTGTGAAAT 61.041 55.556 37.37 14.19 42.99 2.17
134 135 2.866510 CACGCGCGCTGTGAAATG 60.867 61.111 35.61 20.17 39.73 2.32
135 136 4.741781 ACGCGCGCTGTGAAATGC 62.742 61.111 32.58 4.84 0.00 3.56
136 137 4.450122 CGCGCGCTGTGAAATGCT 62.450 61.111 30.48 0.00 0.00 3.79
137 138 2.126734 GCGCGCTGTGAAATGCTT 60.127 55.556 26.67 0.00 0.00 3.91
138 139 2.148365 GCGCGCTGTGAAATGCTTC 61.148 57.895 26.67 0.00 0.00 3.86
139 140 1.207339 CGCGCTGTGAAATGCTTCA 59.793 52.632 5.56 0.00 39.30 3.02
148 149 1.266718 TGAAATGCTTCACGTCCAAGC 59.733 47.619 18.12 18.12 45.59 4.01
151 152 3.731136 GCTTCACGTCCAAGCACA 58.269 55.556 19.47 0.00 44.87 4.57
152 153 2.021722 GCTTCACGTCCAAGCACAA 58.978 52.632 19.47 0.00 44.87 3.33
153 154 0.317020 GCTTCACGTCCAAGCACAAC 60.317 55.000 19.47 0.00 44.87 3.32
154 155 1.299541 CTTCACGTCCAAGCACAACT 58.700 50.000 0.00 0.00 0.00 3.16
155 156 1.261619 CTTCACGTCCAAGCACAACTC 59.738 52.381 0.00 0.00 0.00 3.01
156 157 0.531974 TCACGTCCAAGCACAACTCC 60.532 55.000 0.00 0.00 0.00 3.85
157 158 0.813610 CACGTCCAAGCACAACTCCA 60.814 55.000 0.00 0.00 0.00 3.86
158 159 0.107410 ACGTCCAAGCACAACTCCAA 60.107 50.000 0.00 0.00 0.00 3.53
159 160 1.021202 CGTCCAAGCACAACTCCAAA 58.979 50.000 0.00 0.00 0.00 3.28
160 161 1.403679 CGTCCAAGCACAACTCCAAAA 59.596 47.619 0.00 0.00 0.00 2.44
161 162 2.159310 CGTCCAAGCACAACTCCAAAAA 60.159 45.455 0.00 0.00 0.00 1.94
162 163 3.490761 CGTCCAAGCACAACTCCAAAAAT 60.491 43.478 0.00 0.00 0.00 1.82
163 164 3.803778 GTCCAAGCACAACTCCAAAAATG 59.196 43.478 0.00 0.00 0.00 2.32
164 165 3.703556 TCCAAGCACAACTCCAAAAATGA 59.296 39.130 0.00 0.00 0.00 2.57
165 166 4.053295 CCAAGCACAACTCCAAAAATGAG 58.947 43.478 0.00 0.00 35.92 2.90
166 167 4.441913 CCAAGCACAACTCCAAAAATGAGT 60.442 41.667 0.00 0.00 44.75 3.41
167 168 4.311816 AGCACAACTCCAAAAATGAGTG 57.688 40.909 0.00 0.00 42.10 3.51
168 169 3.701040 AGCACAACTCCAAAAATGAGTGT 59.299 39.130 0.00 0.00 42.10 3.55
169 170 4.887071 AGCACAACTCCAAAAATGAGTGTA 59.113 37.500 0.00 0.00 42.10 2.90
170 171 5.009010 AGCACAACTCCAAAAATGAGTGTAG 59.991 40.000 0.00 0.00 42.10 2.74
171 172 5.008613 GCACAACTCCAAAAATGAGTGTAGA 59.991 40.000 0.00 0.00 42.10 2.59
172 173 6.459573 GCACAACTCCAAAAATGAGTGTAGAA 60.460 38.462 0.00 0.00 42.10 2.10
173 174 7.479980 CACAACTCCAAAAATGAGTGTAGAAA 58.520 34.615 0.00 0.00 42.10 2.52
174 175 7.973388 CACAACTCCAAAAATGAGTGTAGAAAA 59.027 33.333 0.00 0.00 42.10 2.29
175 176 8.527810 ACAACTCCAAAAATGAGTGTAGAAAAA 58.472 29.630 0.00 0.00 42.10 1.94
176 177 8.807581 CAACTCCAAAAATGAGTGTAGAAAAAC 58.192 33.333 0.00 0.00 42.10 2.43
177 178 7.489160 ACTCCAAAAATGAGTGTAGAAAAACC 58.511 34.615 0.00 0.00 41.40 3.27
178 179 7.123547 ACTCCAAAAATGAGTGTAGAAAAACCA 59.876 33.333 0.00 0.00 41.40 3.67
179 180 7.841956 TCCAAAAATGAGTGTAGAAAAACCAA 58.158 30.769 0.00 0.00 0.00 3.67
180 181 8.314751 TCCAAAAATGAGTGTAGAAAAACCAAA 58.685 29.630 0.00 0.00 0.00 3.28
181 182 8.940952 CCAAAAATGAGTGTAGAAAAACCAAAA 58.059 29.630 0.00 0.00 0.00 2.44
227 228 9.915629 AAACCAAAAATAAAAGTTGAAAAACCC 57.084 25.926 0.00 0.00 0.00 4.11
228 229 8.057536 ACCAAAAATAAAAGTTGAAAAACCCC 57.942 30.769 0.00 0.00 0.00 4.95
229 230 7.670140 ACCAAAAATAAAAGTTGAAAAACCCCA 59.330 29.630 0.00 0.00 0.00 4.96
230 231 8.523658 CCAAAAATAAAAGTTGAAAAACCCCAA 58.476 29.630 0.00 0.00 0.00 4.12
231 232 9.914131 CAAAAATAAAAGTTGAAAAACCCCAAA 57.086 25.926 0.00 0.00 0.00 3.28
233 234 9.521841 AAAATAAAAGTTGAAAAACCCCAAAGA 57.478 25.926 0.00 0.00 0.00 2.52
234 235 8.500753 AATAAAAGTTGAAAAACCCCAAAGAC 57.499 30.769 0.00 0.00 0.00 3.01
235 236 5.755409 AAAGTTGAAAAACCCCAAAGACT 57.245 34.783 0.00 0.00 0.00 3.24
236 237 5.339008 AAGTTGAAAAACCCCAAAGACTC 57.661 39.130 0.00 0.00 0.00 3.36
237 238 3.380320 AGTTGAAAAACCCCAAAGACTCG 59.620 43.478 0.00 0.00 0.00 4.18
238 239 3.007473 TGAAAAACCCCAAAGACTCGT 57.993 42.857 0.00 0.00 0.00 4.18
239 240 2.685897 TGAAAAACCCCAAAGACTCGTG 59.314 45.455 0.00 0.00 0.00 4.35
240 241 1.029681 AAAACCCCAAAGACTCGTGC 58.970 50.000 0.00 0.00 0.00 5.34
241 242 0.106918 AAACCCCAAAGACTCGTGCA 60.107 50.000 0.00 0.00 0.00 4.57
242 243 0.106918 AACCCCAAAGACTCGTGCAA 60.107 50.000 0.00 0.00 0.00 4.08
243 244 0.106918 ACCCCAAAGACTCGTGCAAA 60.107 50.000 0.00 0.00 0.00 3.68
244 245 1.028905 CCCCAAAGACTCGTGCAAAA 58.971 50.000 0.00 0.00 0.00 2.44
245 246 1.407258 CCCCAAAGACTCGTGCAAAAA 59.593 47.619 0.00 0.00 0.00 1.94
246 247 2.543653 CCCCAAAGACTCGTGCAAAAAG 60.544 50.000 0.00 0.00 0.00 2.27
247 248 2.543653 CCCAAAGACTCGTGCAAAAAGG 60.544 50.000 0.00 0.00 0.00 3.11
248 249 2.099098 CCAAAGACTCGTGCAAAAAGGT 59.901 45.455 0.00 0.00 0.00 3.50
249 250 3.314080 CCAAAGACTCGTGCAAAAAGGTA 59.686 43.478 0.00 0.00 0.00 3.08
250 251 4.279659 CAAAGACTCGTGCAAAAAGGTAC 58.720 43.478 0.00 0.00 0.00 3.34
270 271 7.899973 AGGTACTTCCTTCGTTCTAAAATACA 58.100 34.615 0.00 0.00 45.67 2.29
271 272 8.370182 AGGTACTTCCTTCGTTCTAAAATACAA 58.630 33.333 0.00 0.00 45.67 2.41
272 273 8.654215 GGTACTTCCTTCGTTCTAAAATACAAG 58.346 37.037 0.00 0.00 0.00 3.16
273 274 7.668525 ACTTCCTTCGTTCTAAAATACAAGG 57.331 36.000 0.00 0.00 0.00 3.61
274 275 7.222161 ACTTCCTTCGTTCTAAAATACAAGGT 58.778 34.615 0.00 0.00 32.33 3.50
275 276 7.172703 ACTTCCTTCGTTCTAAAATACAAGGTG 59.827 37.037 0.00 0.00 32.33 4.00
276 277 6.527423 TCCTTCGTTCTAAAATACAAGGTGT 58.473 36.000 0.00 0.00 32.33 4.16
277 278 7.669427 TCCTTCGTTCTAAAATACAAGGTGTA 58.331 34.615 0.00 0.00 37.24 2.90
278 279 8.316214 TCCTTCGTTCTAAAATACAAGGTGTAT 58.684 33.333 0.00 0.00 44.79 2.29
333 334 0.524862 ACGTGTACTCATGGGTCGTC 59.475 55.000 0.00 0.00 35.12 4.20
364 366 0.606604 AAGCCCAGACGACGTAACAT 59.393 50.000 0.00 0.00 0.00 2.71
375 377 4.553323 ACGACGTAACATATATTCTGGGC 58.447 43.478 0.00 0.00 0.00 5.36
387 389 0.030705 TTCTGGGCCTGGATCTAGCT 60.031 55.000 10.79 0.00 0.00 3.32
399 401 2.289569 GGATCTAGCTGCCCATCTCAAG 60.290 54.545 0.00 0.00 0.00 3.02
411 413 3.752339 CTCAAGCAAAGCCCGCCC 61.752 66.667 0.00 0.00 0.00 6.13
426 436 3.771160 CCCGCTAGCACGACCCTT 61.771 66.667 16.45 0.00 34.06 3.95
430 440 1.148157 CGCTAGCACGACCCTTCATG 61.148 60.000 16.45 0.00 34.06 3.07
431 441 0.811616 GCTAGCACGACCCTTCATGG 60.812 60.000 10.63 0.00 0.00 3.66
455 465 4.667420 CACGACACGGGCTAAACT 57.333 55.556 0.00 0.00 0.00 2.66
482 492 2.125713 CGACACACGGCATGCCTA 60.126 61.111 33.07 0.00 38.46 3.93
483 493 2.167219 CGACACACGGCATGCCTAG 61.167 63.158 33.07 25.97 38.46 3.02
484 494 1.815421 GACACACGGCATGCCTAGG 60.815 63.158 33.07 23.30 0.00 3.02
485 495 2.514592 CACACGGCATGCCTAGGG 60.515 66.667 33.07 22.49 0.00 3.53
608 619 0.320374 GGCCTAAAAACAGCCCAACC 59.680 55.000 0.00 0.00 41.00 3.77
609 620 0.038618 GCCTAAAAACAGCCCAACCG 60.039 55.000 0.00 0.00 0.00 4.44
612 623 0.955905 TAAAAACAGCCCAACCGCTC 59.044 50.000 0.00 0.00 36.82 5.03
613 624 2.070654 AAAAACAGCCCAACCGCTCG 62.071 55.000 0.00 0.00 36.82 5.03
626 637 1.206578 CGCTCGAAAAACATGCGGT 59.793 52.632 5.18 0.00 42.46 5.68
632 643 0.729140 GAAAAACATGCGGTCCAGCG 60.729 55.000 0.00 0.00 40.67 5.18
662 673 0.738389 GCCATGTACCGGTCCATTTG 59.262 55.000 12.40 6.20 0.00 2.32
673 684 4.945543 ACCGGTCCATTTGATAACTAAACC 59.054 41.667 0.00 0.00 0.00 3.27
682 693 3.247442 TGATAACTAAACCGTGTCTGCG 58.753 45.455 0.00 0.00 0.00 5.18
684 695 1.554042 AACTAAACCGTGTCTGCGCG 61.554 55.000 0.00 0.00 46.95 6.86
737 748 3.055719 CGCCTTGGAACGTGCCAT 61.056 61.111 18.31 0.00 37.86 4.40
808 819 1.609208 GTTTGGCCAGCTCTTCTCAA 58.391 50.000 5.11 0.00 0.00 3.02
817 828 1.016653 GCTCTTCTCAACCCACGCTC 61.017 60.000 0.00 0.00 0.00 5.03
822 833 0.039180 TCTCAACCCACGCTCTAGGA 59.961 55.000 0.00 0.00 0.00 2.94
890 901 3.930012 CGAATCCGCTCCTCCCCC 61.930 72.222 0.00 0.00 0.00 5.40
1224 1253 1.079336 GTTCCTCTTCCGTTCGGGG 60.079 63.158 11.37 4.83 36.01 5.73
1226 1255 0.832983 TTCCTCTTCCGTTCGGGGAA 60.833 55.000 11.37 12.30 43.66 3.97
1227 1256 1.079336 CCTCTTCCGTTCGGGGAAC 60.079 63.158 11.37 0.00 41.08 3.62
1228 1257 1.542187 CCTCTTCCGTTCGGGGAACT 61.542 60.000 11.37 0.00 41.08 3.01
1288 1317 2.965147 GCAATGTCCGAAGCGCACA 61.965 57.895 11.47 4.77 0.00 4.57
1314 1348 2.476185 GCAGTGCCAATTGTTAGCTACG 60.476 50.000 2.85 0.00 0.00 3.51
1324 1358 1.266466 GTTAGCTACGGTTCAGCGAC 58.734 55.000 5.23 0.00 43.97 5.19
1340 1374 4.988598 ACGGTGGCGAGCCTGTTG 62.989 66.667 15.75 5.33 36.94 3.33
1380 1414 5.860941 TTGTTTGTGCTTGGAATTCCTTA 57.139 34.783 24.73 12.12 36.82 2.69
1391 1426 0.912486 AATTCCTTACGGCTGAGGCT 59.088 50.000 4.02 0.00 38.73 4.58
1432 1484 6.195244 GCTGCACTACGATTTGTGAATTATTG 59.805 38.462 0.00 0.00 36.38 1.90
1449 1501 2.519771 TTGATGCTGATGAAAGGGCT 57.480 45.000 0.00 0.00 0.00 5.19
1450 1502 1.758936 TGATGCTGATGAAAGGGCTG 58.241 50.000 0.00 0.00 0.00 4.85
1507 1559 2.031333 GGCAGAAAAGCTCAACAGTCTG 60.031 50.000 0.00 0.00 36.43 3.51
1738 1796 0.944386 TGGAAACGCTCAAGTCTTGC 59.056 50.000 7.78 0.00 0.00 4.01
1818 1876 2.202946 TCGAACGCCACTGCAACA 60.203 55.556 0.00 0.00 37.32 3.33
1875 1933 2.468831 GCTAGGAGAGATGAGTTTGCG 58.531 52.381 0.00 0.00 0.00 4.85
2096 2168 5.220854 CCCTGGAAATTTGTAGTTATGCTCG 60.221 44.000 0.00 0.00 0.00 5.03
2393 2465 5.187967 TGTGTGTGAAGGGGTTAAATTTGTT 59.812 36.000 0.00 0.00 0.00 2.83
2551 2624 8.688747 ACTCATCAAAGTTCTCATTCTCTTTT 57.311 30.769 0.00 0.00 0.00 2.27
2665 2738 4.246712 ACCATGAGAGCAAGATTCCAAT 57.753 40.909 0.00 0.00 0.00 3.16
2699 2772 5.480073 TCAAAGGTATTCCATGTTTCCTTGG 59.520 40.000 0.00 0.00 35.78 3.61
2844 2917 7.770801 ACTTAAGTTTCAACCAATTTGCTTC 57.229 32.000 1.12 0.00 34.88 3.86
2867 2940 6.268566 TCATAATCAACTGAGTGTCGAGATG 58.731 40.000 0.00 0.00 0.00 2.90
2901 2981 0.403271 GTATGATGGGAGGCTGGCAT 59.597 55.000 3.38 0.00 0.00 4.40
2904 2984 1.358051 TGATGGGAGGCTGGCATCAT 61.358 55.000 9.37 3.93 0.00 2.45
2905 2985 0.894184 GATGGGAGGCTGGCATCATG 60.894 60.000 9.37 0.00 0.00 3.07
2906 2986 1.652187 ATGGGAGGCTGGCATCATGT 61.652 55.000 9.37 0.00 0.00 3.21
2907 2987 1.076485 GGGAGGCTGGCATCATGTT 60.076 57.895 9.37 0.00 0.00 2.71
2908 2988 0.685458 GGGAGGCTGGCATCATGTTT 60.685 55.000 9.37 0.00 0.00 2.83
2909 2989 1.188863 GGAGGCTGGCATCATGTTTT 58.811 50.000 9.37 0.00 0.00 2.43
2910 2990 2.378038 GGAGGCTGGCATCATGTTTTA 58.622 47.619 9.37 0.00 0.00 1.52
2911 2991 2.360165 GGAGGCTGGCATCATGTTTTAG 59.640 50.000 9.37 0.00 0.00 1.85
2912 2992 3.019564 GAGGCTGGCATCATGTTTTAGT 58.980 45.455 3.38 0.00 0.00 2.24
2954 3034 1.269517 TGGAAACTTGAATTGCACCGC 60.270 47.619 0.00 0.00 0.00 5.68
2979 3060 5.505159 CGTGTCTGTATAGCGTAATCTTCCA 60.505 44.000 0.00 0.00 0.00 3.53
3019 3100 6.809689 TGCAATCATGATTTAGTTTTCTGCTG 59.190 34.615 18.41 4.65 0.00 4.41
3029 3110 9.899226 GATTTAGTTTTCTGCTGTAAAGATGTT 57.101 29.630 0.00 0.00 0.00 2.71
3141 3223 4.469657 ACTGAAAGAAATGCCAAGTACCA 58.530 39.130 0.00 0.00 37.43 3.25
3170 3252 2.093075 AGCAGTTCATGACCTCTGATGG 60.093 50.000 19.43 0.00 0.00 3.51
3201 3290 6.480320 CCATGCCTAGTGTACTTTCTCATAAC 59.520 42.308 0.00 0.00 0.00 1.89
3238 3327 4.280436 TGGTACATGGTAGTTCTGTTGG 57.720 45.455 0.00 0.00 0.00 3.77
3270 3359 4.755411 TGCCTATCTTACTCTTTGTTCCG 58.245 43.478 0.00 0.00 0.00 4.30
3286 3375 2.693591 GTTCCGATCTACCATGTGGAGA 59.306 50.000 5.96 5.03 38.94 3.71
3342 3437 8.198109 TCATTTATAGAGACTTCTGCTTGTACC 58.802 37.037 0.00 0.00 34.79 3.34
3486 3582 2.568623 AGCCGGTCAAAGAATCAAGT 57.431 45.000 1.90 0.00 0.00 3.16
3488 3584 2.814336 AGCCGGTCAAAGAATCAAGTTC 59.186 45.455 1.90 0.00 37.08 3.01
3549 3645 1.062428 TCCCCTTACATCGGGATCTGT 60.062 52.381 0.00 0.00 43.72 3.41
3577 3673 2.594303 TCCCCACGCTTTGCTGTG 60.594 61.111 0.00 0.00 34.67 3.66
3592 3688 4.123497 TGCTGTGAGTACACCATATCAC 57.877 45.455 0.00 0.00 45.40 3.06
3598 3694 3.046374 GAGTACACCATATCACCCCCTT 58.954 50.000 0.00 0.00 0.00 3.95
3674 3785 3.200605 TGGTGCTGATGTATCAAGATGGT 59.799 43.478 0.00 0.00 36.18 3.55
3675 3786 4.202441 GGTGCTGATGTATCAAGATGGTT 58.798 43.478 0.00 0.00 36.18 3.67
3676 3787 4.641989 GGTGCTGATGTATCAAGATGGTTT 59.358 41.667 0.00 0.00 36.18 3.27
3723 3834 5.531096 ATGCAGGGAATAGGCATTAAGCAC 61.531 45.833 0.00 0.00 45.34 4.40
3906 4032 2.354259 GCTTCTGGTCCTCTCAACATG 58.646 52.381 0.00 0.00 0.00 3.21
3950 4076 2.921121 TGTACAGCGAAGTTAAGCATCG 59.079 45.455 0.00 0.00 40.78 3.84
3961 4087 7.115095 GCGAAGTTAAGCATCGAGTATATCTTT 59.885 37.037 8.25 0.00 40.32 2.52
4099 4227 7.148523 CGTAAACTCCAAACCTGTTATAGTTCC 60.149 40.741 0.00 0.00 0.00 3.62
4136 4264 1.744522 TCGGCCATGAACATGAACATG 59.255 47.619 20.89 20.89 41.20 3.21
4165 4293 1.204704 TGATGCAGAGGGACTTGTACG 59.795 52.381 0.00 0.00 41.55 3.67
4167 4295 0.830444 TGCAGAGGGACTTGTACGGT 60.830 55.000 0.00 0.00 41.55 4.83
4168 4296 1.180029 GCAGAGGGACTTGTACGGTA 58.820 55.000 0.00 0.00 41.55 4.02
4169 4297 1.134560 GCAGAGGGACTTGTACGGTAG 59.865 57.143 0.00 0.00 41.55 3.18
4170 4298 1.134560 CAGAGGGACTTGTACGGTAGC 59.865 57.143 0.00 0.00 41.55 3.58
4171 4299 0.459078 GAGGGACTTGTACGGTAGCC 59.541 60.000 0.00 0.00 41.55 3.93
4173 4301 1.259840 GGGACTTGTACGGTAGCCCA 61.260 60.000 0.00 0.00 34.25 5.36
4174 4302 0.828677 GGACTTGTACGGTAGCCCAT 59.171 55.000 0.00 0.00 0.00 4.00
4175 4303 1.472728 GGACTTGTACGGTAGCCCATG 60.473 57.143 0.00 0.00 0.00 3.66
4176 4304 0.539986 ACTTGTACGGTAGCCCATGG 59.460 55.000 4.14 4.14 0.00 3.66
4223 4351 3.713902 CCTTATCGAGGCCAGCAAT 57.286 52.632 5.01 0.00 39.09 3.56
4224 4352 2.839486 CCTTATCGAGGCCAGCAATA 57.161 50.000 5.01 0.00 39.09 1.90
4225 4353 2.693069 CCTTATCGAGGCCAGCAATAG 58.307 52.381 5.01 0.00 39.09 1.73
4226 4354 2.037772 CCTTATCGAGGCCAGCAATAGT 59.962 50.000 5.01 0.00 39.09 2.12
4227 4355 2.820059 TATCGAGGCCAGCAATAGTG 57.180 50.000 5.01 0.00 0.00 2.74
4240 4368 2.925563 GCAATAGTGCCATCAAAACAGC 59.074 45.455 3.16 0.00 45.68 4.40
4241 4369 3.367703 GCAATAGTGCCATCAAAACAGCT 60.368 43.478 3.16 0.00 45.68 4.24
4242 4370 4.142403 GCAATAGTGCCATCAAAACAGCTA 60.142 41.667 3.16 0.00 45.68 3.32
4243 4371 5.450965 GCAATAGTGCCATCAAAACAGCTAT 60.451 40.000 3.16 0.00 45.68 2.97
4244 4372 6.238731 GCAATAGTGCCATCAAAACAGCTATA 60.239 38.462 3.16 0.00 45.68 1.31
4245 4373 7.681782 GCAATAGTGCCATCAAAACAGCTATAA 60.682 37.037 3.16 0.00 45.68 0.98
4246 4374 7.880160 ATAGTGCCATCAAAACAGCTATAAA 57.120 32.000 0.00 0.00 0.00 1.40
4247 4375 6.780457 AGTGCCATCAAAACAGCTATAAAT 57.220 33.333 0.00 0.00 0.00 1.40
4248 4376 7.880160 AGTGCCATCAAAACAGCTATAAATA 57.120 32.000 0.00 0.00 0.00 1.40
4249 4377 8.292444 AGTGCCATCAAAACAGCTATAAATAA 57.708 30.769 0.00 0.00 0.00 1.40
4250 4378 8.748412 AGTGCCATCAAAACAGCTATAAATAAA 58.252 29.630 0.00 0.00 0.00 1.40
4251 4379 8.807581 GTGCCATCAAAACAGCTATAAATAAAC 58.192 33.333 0.00 0.00 0.00 2.01
4252 4380 7.978975 TGCCATCAAAACAGCTATAAATAAACC 59.021 33.333 0.00 0.00 0.00 3.27
4253 4381 8.197439 GCCATCAAAACAGCTATAAATAAACCT 58.803 33.333 0.00 0.00 0.00 3.50
4254 4382 9.520204 CCATCAAAACAGCTATAAATAAACCTG 57.480 33.333 0.00 0.00 0.00 4.00
4273 4401 6.997942 ACCTGAATAATAAGTACTCCCTCC 57.002 41.667 0.00 0.00 0.00 4.30
4274 4402 5.539193 ACCTGAATAATAAGTACTCCCTCCG 59.461 44.000 0.00 0.00 0.00 4.63
4275 4403 5.539193 CCTGAATAATAAGTACTCCCTCCGT 59.461 44.000 0.00 0.00 0.00 4.69
4276 4404 6.041751 CCTGAATAATAAGTACTCCCTCCGTT 59.958 42.308 0.00 0.00 0.00 4.44
4277 4405 7.418712 CCTGAATAATAAGTACTCCCTCCGTTT 60.419 40.741 0.00 0.00 0.00 3.60
4278 4406 7.854337 TGAATAATAAGTACTCCCTCCGTTTT 58.146 34.615 0.00 0.00 0.00 2.43
4279 4407 8.323567 TGAATAATAAGTACTCCCTCCGTTTTT 58.676 33.333 0.00 0.00 0.00 1.94
4280 4408 9.822185 GAATAATAAGTACTCCCTCCGTTTTTA 57.178 33.333 0.00 0.00 0.00 1.52
4285 4413 7.912056 AAGTACTCCCTCCGTTTTTATTTAC 57.088 36.000 0.00 0.00 0.00 2.01
4286 4414 7.250032 AGTACTCCCTCCGTTTTTATTTACT 57.750 36.000 0.00 0.00 0.00 2.24
4287 4415 7.326454 AGTACTCCCTCCGTTTTTATTTACTC 58.674 38.462 0.00 0.00 0.00 2.59
4288 4416 6.370186 ACTCCCTCCGTTTTTATTTACTCT 57.630 37.500 0.00 0.00 0.00 3.24
4289 4417 6.171213 ACTCCCTCCGTTTTTATTTACTCTG 58.829 40.000 0.00 0.00 0.00 3.35
4290 4418 4.939439 TCCCTCCGTTTTTATTTACTCTGC 59.061 41.667 0.00 0.00 0.00 4.26
4291 4419 4.201783 CCCTCCGTTTTTATTTACTCTGCG 60.202 45.833 0.00 0.00 0.00 5.18
4292 4420 4.390909 CCTCCGTTTTTATTTACTCTGCGT 59.609 41.667 0.00 0.00 0.00 5.24
4293 4421 5.577945 CCTCCGTTTTTATTTACTCTGCGTA 59.422 40.000 0.00 0.00 0.00 4.42
4294 4422 6.257193 CCTCCGTTTTTATTTACTCTGCGTAT 59.743 38.462 0.00 0.00 0.00 3.06
4295 4423 7.201582 CCTCCGTTTTTATTTACTCTGCGTATT 60.202 37.037 0.00 0.00 0.00 1.89
4296 4424 8.700722 TCCGTTTTTATTTACTCTGCGTATTA 57.299 30.769 0.00 0.00 0.00 0.98
4297 4425 8.810427 TCCGTTTTTATTTACTCTGCGTATTAG 58.190 33.333 0.00 0.00 0.00 1.73
4298 4426 7.581600 CCGTTTTTATTTACTCTGCGTATTAGC 59.418 37.037 0.00 0.00 37.71 3.09
4299 4427 8.325997 CGTTTTTATTTACTCTGCGTATTAGCT 58.674 33.333 0.00 0.00 38.13 3.32
4300 4428 9.983804 GTTTTTATTTACTCTGCGTATTAGCTT 57.016 29.630 0.00 0.00 38.13 3.74
4305 4433 7.982371 TTTACTCTGCGTATTAGCTTTAGTC 57.018 36.000 0.00 0.00 38.13 2.59
4306 4434 5.578005 ACTCTGCGTATTAGCTTTAGTCA 57.422 39.130 0.00 0.00 38.13 3.41
4307 4435 5.962433 ACTCTGCGTATTAGCTTTAGTCAA 58.038 37.500 0.00 0.00 38.13 3.18
4308 4436 6.395629 ACTCTGCGTATTAGCTTTAGTCAAA 58.604 36.000 0.00 0.00 38.13 2.69
4309 4437 6.531948 ACTCTGCGTATTAGCTTTAGTCAAAG 59.468 38.462 0.00 0.00 43.46 2.77
4310 4438 6.395629 TCTGCGTATTAGCTTTAGTCAAAGT 58.604 36.000 0.00 0.00 42.71 2.66
4311 4439 6.530534 TCTGCGTATTAGCTTTAGTCAAAGTC 59.469 38.462 0.00 0.00 42.71 3.01
4312 4440 6.160684 TGCGTATTAGCTTTAGTCAAAGTCA 58.839 36.000 0.00 0.00 42.71 3.41
4313 4441 6.647481 TGCGTATTAGCTTTAGTCAAAGTCAA 59.353 34.615 0.00 0.00 42.71 3.18
4314 4442 7.171848 TGCGTATTAGCTTTAGTCAAAGTCAAA 59.828 33.333 0.00 0.00 42.71 2.69
4315 4443 7.477733 GCGTATTAGCTTTAGTCAAAGTCAAAC 59.522 37.037 0.00 0.00 42.71 2.93
4316 4444 8.709646 CGTATTAGCTTTAGTCAAAGTCAAACT 58.290 33.333 0.00 0.00 42.71 2.66
4396 4524 9.685276 AGATTCATTATCAAATGTACTTCCACA 57.315 29.630 0.00 0.00 42.66 4.17
4399 4527 9.460019 TTCATTATCAAATGTACTTCCACATCA 57.540 29.630 0.00 0.00 42.66 3.07
4400 4528 9.631257 TCATTATCAAATGTACTTCCACATCAT 57.369 29.630 0.00 0.00 42.66 2.45
4489 4617 7.462109 GACTTCAGTCAACTCTAATATGCAG 57.538 40.000 1.86 0.00 44.18 4.41
4490 4618 7.175347 ACTTCAGTCAACTCTAATATGCAGA 57.825 36.000 0.00 0.00 0.00 4.26
4491 4619 7.264221 ACTTCAGTCAACTCTAATATGCAGAG 58.736 38.462 11.37 11.37 44.28 3.35
4507 4635 5.873179 TGCAGAGTAAATAAAAACGGAGG 57.127 39.130 0.00 0.00 0.00 4.30
4508 4636 4.698304 TGCAGAGTAAATAAAAACGGAGGG 59.302 41.667 0.00 0.00 0.00 4.30
4509 4637 4.095932 GCAGAGTAAATAAAAACGGAGGGG 59.904 45.833 0.00 0.00 0.00 4.79
4510 4638 4.638865 CAGAGTAAATAAAAACGGAGGGGG 59.361 45.833 0.00 0.00 0.00 5.40
4511 4639 4.290459 AGAGTAAATAAAAACGGAGGGGGT 59.710 41.667 0.00 0.00 0.00 4.95
4512 4640 5.488561 AGAGTAAATAAAAACGGAGGGGGTA 59.511 40.000 0.00 0.00 0.00 3.69
4513 4641 5.500234 AGTAAATAAAAACGGAGGGGGTAC 58.500 41.667 0.00 0.00 0.00 3.34
4514 4642 4.662966 AAATAAAAACGGAGGGGGTACT 57.337 40.909 0.00 0.00 0.00 2.73
4515 4643 4.662966 AATAAAAACGGAGGGGGTACTT 57.337 40.909 0.00 0.00 0.00 2.24
4516 4644 2.574006 AAAAACGGAGGGGGTACTTC 57.426 50.000 0.00 0.00 0.00 3.01
4517 4645 1.738474 AAAACGGAGGGGGTACTTCT 58.262 50.000 0.00 0.00 0.00 2.85
4518 4646 1.738474 AAACGGAGGGGGTACTTCTT 58.262 50.000 0.00 0.00 0.00 2.52
4519 4647 1.273759 AACGGAGGGGGTACTTCTTC 58.726 55.000 0.00 0.00 0.00 2.87
4520 4648 0.115745 ACGGAGGGGGTACTTCTTCA 59.884 55.000 0.00 0.00 0.00 3.02
4521 4649 0.824759 CGGAGGGGGTACTTCTTCAG 59.175 60.000 0.00 0.00 0.00 3.02
4522 4650 1.205055 GGAGGGGGTACTTCTTCAGG 58.795 60.000 0.00 0.00 0.00 3.86
4523 4651 1.205055 GAGGGGGTACTTCTTCAGGG 58.795 60.000 0.00 0.00 0.00 4.45
4524 4652 0.797579 AGGGGGTACTTCTTCAGGGA 59.202 55.000 0.00 0.00 0.00 4.20
4525 4653 0.910338 GGGGGTACTTCTTCAGGGAC 59.090 60.000 0.00 0.00 0.00 4.46
4526 4654 1.652947 GGGGTACTTCTTCAGGGACA 58.347 55.000 0.00 0.00 0.00 4.02
4527 4655 1.982958 GGGGTACTTCTTCAGGGACAA 59.017 52.381 0.00 0.00 0.00 3.18
4528 4656 2.027100 GGGGTACTTCTTCAGGGACAAG 60.027 54.545 0.00 0.00 0.00 3.16
4529 4657 2.638363 GGGTACTTCTTCAGGGACAAGT 59.362 50.000 0.00 0.00 33.63 3.16
4530 4658 3.072622 GGGTACTTCTTCAGGGACAAGTT 59.927 47.826 0.00 0.00 31.52 2.66
4531 4659 4.445879 GGGTACTTCTTCAGGGACAAGTTT 60.446 45.833 0.00 0.00 31.52 2.66
4532 4660 5.221783 GGGTACTTCTTCAGGGACAAGTTTA 60.222 44.000 0.00 0.00 31.52 2.01
4533 4661 5.699915 GGTACTTCTTCAGGGACAAGTTTAC 59.300 44.000 0.00 0.00 31.52 2.01
4534 4662 4.715713 ACTTCTTCAGGGACAAGTTTACC 58.284 43.478 0.00 0.00 0.00 2.85
4535 4663 4.412528 ACTTCTTCAGGGACAAGTTTACCT 59.587 41.667 0.00 0.00 0.00 3.08
4544 4672 7.761038 AGGGACAAGTTTACCTGAATTTAAG 57.239 36.000 0.00 0.00 30.71 1.85
4545 4673 6.208797 AGGGACAAGTTTACCTGAATTTAAGC 59.791 38.462 0.00 0.00 30.71 3.09
4546 4674 6.015772 GGGACAAGTTTACCTGAATTTAAGCA 60.016 38.462 0.00 0.00 0.00 3.91
4547 4675 6.861572 GGACAAGTTTACCTGAATTTAAGCAC 59.138 38.462 0.00 0.00 0.00 4.40
4548 4676 7.341445 ACAAGTTTACCTGAATTTAAGCACA 57.659 32.000 0.00 0.00 0.00 4.57
4549 4677 7.200455 ACAAGTTTACCTGAATTTAAGCACAC 58.800 34.615 0.00 0.00 0.00 3.82
4550 4678 7.068226 ACAAGTTTACCTGAATTTAAGCACACT 59.932 33.333 0.00 0.00 0.00 3.55
4551 4679 7.582667 AGTTTACCTGAATTTAAGCACACTT 57.417 32.000 0.00 0.00 40.07 3.16
4552 4680 8.007405 AGTTTACCTGAATTTAAGCACACTTT 57.993 30.769 0.00 0.00 37.33 2.66
4553 4681 9.127277 AGTTTACCTGAATTTAAGCACACTTTA 57.873 29.630 0.00 0.00 37.33 1.85
4554 4682 9.738832 GTTTACCTGAATTTAAGCACACTTTAA 57.261 29.630 0.00 0.00 37.33 1.52
4587 4715 9.953565 TGAACTATTGGCAACTTAAATAGTACT 57.046 29.630 0.00 0.00 43.13 2.73
4589 4717 8.959705 ACTATTGGCAACTTAAATAGTACTCC 57.040 34.615 0.00 0.00 42.48 3.85
4590 4718 7.991460 ACTATTGGCAACTTAAATAGTACTCCC 59.009 37.037 0.00 0.00 42.48 4.30
4591 4719 6.382919 TTGGCAACTTAAATAGTACTCCCT 57.617 37.500 0.00 0.00 35.54 4.20
4592 4720 5.985911 TGGCAACTTAAATAGTACTCCCTC 58.014 41.667 0.00 0.00 35.54 4.30
4593 4721 5.724854 TGGCAACTTAAATAGTACTCCCTCT 59.275 40.000 0.00 0.00 35.54 3.69
4594 4722 6.049790 GGCAACTTAAATAGTACTCCCTCTG 58.950 44.000 0.00 0.00 35.54 3.35
4595 4723 6.351966 GGCAACTTAAATAGTACTCCCTCTGT 60.352 42.308 0.00 0.00 35.54 3.41
4596 4724 6.757478 GCAACTTAAATAGTACTCCCTCTGTC 59.243 42.308 0.00 0.00 35.54 3.51
4597 4725 7.266400 CAACTTAAATAGTACTCCCTCTGTCC 58.734 42.308 0.00 0.00 35.54 4.02
4598 4726 5.898397 ACTTAAATAGTACTCCCTCTGTCCC 59.102 44.000 0.00 0.00 34.56 4.46
4599 4727 4.348020 AAATAGTACTCCCTCTGTCCCA 57.652 45.455 0.00 0.00 0.00 4.37
4600 4728 4.561254 AATAGTACTCCCTCTGTCCCAT 57.439 45.455 0.00 0.00 0.00 4.00
4601 4729 5.681494 AATAGTACTCCCTCTGTCCCATA 57.319 43.478 0.00 0.00 0.00 2.74
4602 4730 5.681494 ATAGTACTCCCTCTGTCCCATAA 57.319 43.478 0.00 0.00 0.00 1.90
4603 4731 4.561254 AGTACTCCCTCTGTCCCATAAT 57.439 45.455 0.00 0.00 0.00 1.28
4604 4732 5.681494 AGTACTCCCTCTGTCCCATAATA 57.319 43.478 0.00 0.00 0.00 0.98
4605 4733 6.234404 AGTACTCCCTCTGTCCCATAATAT 57.766 41.667 0.00 0.00 0.00 1.28
4606 4734 7.358255 AGTACTCCCTCTGTCCCATAATATA 57.642 40.000 0.00 0.00 0.00 0.86
4607 4735 7.776745 AGTACTCCCTCTGTCCCATAATATAA 58.223 38.462 0.00 0.00 0.00 0.98
4608 4736 7.896496 AGTACTCCCTCTGTCCCATAATATAAG 59.104 40.741 0.00 0.00 0.00 1.73
4609 4737 6.875469 ACTCCCTCTGTCCCATAATATAAGA 58.125 40.000 0.00 0.00 0.00 2.10
4610 4738 6.957020 ACTCCCTCTGTCCCATAATATAAGAG 59.043 42.308 0.00 0.00 0.00 2.85
4611 4739 5.721960 TCCCTCTGTCCCATAATATAAGAGC 59.278 44.000 0.00 0.00 0.00 4.09
4612 4740 5.394663 CCCTCTGTCCCATAATATAAGAGCG 60.395 48.000 0.00 0.00 0.00 5.03
4613 4741 5.186021 CCTCTGTCCCATAATATAAGAGCGT 59.814 44.000 0.00 0.00 0.00 5.07
4614 4742 6.295349 CCTCTGTCCCATAATATAAGAGCGTT 60.295 42.308 0.00 0.00 0.00 4.84
4615 4743 7.062749 TCTGTCCCATAATATAAGAGCGTTT 57.937 36.000 0.00 0.00 0.00 3.60
4616 4744 7.506114 TCTGTCCCATAATATAAGAGCGTTTT 58.494 34.615 0.00 0.00 0.00 2.43
4617 4745 7.990886 TCTGTCCCATAATATAAGAGCGTTTTT 59.009 33.333 0.00 0.00 0.00 1.94
4618 4746 7.925993 TGTCCCATAATATAAGAGCGTTTTTG 58.074 34.615 0.00 0.00 0.00 2.44
4619 4747 7.771361 TGTCCCATAATATAAGAGCGTTTTTGA 59.229 33.333 0.00 0.00 0.00 2.69
4620 4748 8.068380 GTCCCATAATATAAGAGCGTTTTTGAC 58.932 37.037 0.00 0.00 0.00 3.18
4621 4749 7.771361 TCCCATAATATAAGAGCGTTTTTGACA 59.229 33.333 0.00 0.00 0.00 3.58
4622 4750 7.855904 CCCATAATATAAGAGCGTTTTTGACAC 59.144 37.037 0.00 0.00 0.00 3.67
4623 4751 8.612619 CCATAATATAAGAGCGTTTTTGACACT 58.387 33.333 0.00 0.00 0.00 3.55
4626 4754 8.773404 AATATAAGAGCGTTTTTGACACTAGT 57.227 30.769 0.00 0.00 0.00 2.57
4627 4755 4.795970 AAGAGCGTTTTTGACACTAGTG 57.204 40.909 21.44 21.44 0.00 2.74
4629 4757 4.940463 AGAGCGTTTTTGACACTAGTGTA 58.060 39.130 27.98 11.50 45.05 2.90
4630 4758 4.982916 AGAGCGTTTTTGACACTAGTGTAG 59.017 41.667 27.98 13.76 45.05 2.74
4631 4759 4.690122 AGCGTTTTTGACACTAGTGTAGT 58.310 39.130 27.98 6.32 45.05 2.73
4660 4788 8.575649 AAAAACGCTTATATATTATGGGAGGG 57.424 34.615 0.00 0.00 0.00 4.30
4661 4789 7.504926 AAACGCTTATATATTATGGGAGGGA 57.495 36.000 0.00 0.00 0.00 4.20
4662 4790 6.732896 ACGCTTATATATTATGGGAGGGAG 57.267 41.667 0.00 0.00 0.00 4.30
4663 4791 5.602978 ACGCTTATATATTATGGGAGGGAGG 59.397 44.000 0.00 0.00 0.00 4.30
4664 4792 5.012148 CGCTTATATATTATGGGAGGGAGGG 59.988 48.000 0.00 0.00 0.00 4.30
4665 4793 6.151049 GCTTATATATTATGGGAGGGAGGGA 58.849 44.000 0.00 0.00 0.00 4.20
4666 4794 6.271159 GCTTATATATTATGGGAGGGAGGGAG 59.729 46.154 0.00 0.00 0.00 4.30
4667 4795 5.858532 ATATATTATGGGAGGGAGGGAGT 57.141 43.478 0.00 0.00 0.00 3.85
4668 4796 6.963154 ATATATTATGGGAGGGAGGGAGTA 57.037 41.667 0.00 0.00 0.00 2.59
4669 4797 3.569135 ATTATGGGAGGGAGGGAGTAG 57.431 52.381 0.00 0.00 0.00 2.57
4670 4798 1.937098 TATGGGAGGGAGGGAGTAGT 58.063 55.000 0.00 0.00 0.00 2.73
4671 4799 1.937098 ATGGGAGGGAGGGAGTAGTA 58.063 55.000 0.00 0.00 0.00 1.82
4672 4800 0.932211 TGGGAGGGAGGGAGTAGTAC 59.068 60.000 0.00 0.00 0.00 2.73
4673 4801 1.233857 GGGAGGGAGGGAGTAGTACT 58.766 60.000 1.37 1.37 0.00 2.73
4674 4802 1.145531 GGGAGGGAGGGAGTAGTACTC 59.854 61.905 20.24 20.24 44.32 2.59
4675 4803 1.851653 GGAGGGAGGGAGTAGTACTCA 59.148 57.143 27.41 0.00 46.79 3.41
4676 4804 2.447811 GGAGGGAGGGAGTAGTACTCAT 59.552 54.545 27.41 17.34 46.79 2.90
4677 4805 3.117054 GGAGGGAGGGAGTAGTACTCATT 60.117 52.174 27.41 16.64 46.79 2.57
4678 4806 4.548669 GAGGGAGGGAGTAGTACTCATTT 58.451 47.826 27.41 14.42 46.79 2.32
4679 4807 4.961585 AGGGAGGGAGTAGTACTCATTTT 58.038 43.478 27.41 12.24 46.79 1.82
4680 4808 4.963628 AGGGAGGGAGTAGTACTCATTTTC 59.036 45.833 27.41 18.33 46.79 2.29
4681 4809 4.101274 GGGAGGGAGTAGTACTCATTTTCC 59.899 50.000 27.41 23.94 46.79 3.13
4682 4810 4.963628 GGAGGGAGTAGTACTCATTTTCCT 59.036 45.833 27.41 23.10 46.79 3.36
4683 4811 5.163395 GGAGGGAGTAGTACTCATTTTCCTG 60.163 48.000 27.41 0.00 46.79 3.86
4684 4812 5.342866 AGGGAGTAGTACTCATTTTCCTGT 58.657 41.667 27.41 5.77 46.79 4.00
4685 4813 6.500336 AGGGAGTAGTACTCATTTTCCTGTA 58.500 40.000 27.41 0.00 46.79 2.74
4686 4814 6.958192 AGGGAGTAGTACTCATTTTCCTGTAA 59.042 38.462 27.41 0.00 46.79 2.41
4687 4815 7.624077 AGGGAGTAGTACTCATTTTCCTGTAAT 59.376 37.037 27.41 4.56 46.79 1.89
4688 4816 8.921205 GGGAGTAGTACTCATTTTCCTGTAATA 58.079 37.037 27.41 0.00 46.79 0.98
4695 4823 9.916397 GTACTCATTTTCCTGTAATAATGAACG 57.084 33.333 0.00 0.00 36.78 3.95
4696 4824 8.561738 ACTCATTTTCCTGTAATAATGAACGT 57.438 30.769 0.00 0.00 36.78 3.99
4697 4825 9.661563 ACTCATTTTCCTGTAATAATGAACGTA 57.338 29.630 0.00 0.00 36.78 3.57
4698 4826 9.916397 CTCATTTTCCTGTAATAATGAACGTAC 57.084 33.333 0.00 0.00 36.78 3.67
4699 4827 9.438228 TCATTTTCCTGTAATAATGAACGTACA 57.562 29.630 0.00 0.00 34.92 2.90
4703 4831 8.780846 TTCCTGTAATAATGAACGTACAATGT 57.219 30.769 0.00 0.00 0.00 2.71
4704 4832 8.780846 TCCTGTAATAATGAACGTACAATGTT 57.219 30.769 0.00 0.00 0.00 2.71
4705 4833 8.875803 TCCTGTAATAATGAACGTACAATGTTC 58.124 33.333 0.00 5.28 42.81 3.18
4706 4834 8.879759 CCTGTAATAATGAACGTACAATGTTCT 58.120 33.333 11.97 0.00 42.90 3.01
4714 4842 9.825972 AATGAACGTACAATGTTCTTTATCTTG 57.174 29.630 11.97 0.00 42.90 3.02
4715 4843 8.373048 TGAACGTACAATGTTCTTTATCTTGT 57.627 30.769 11.97 0.00 42.90 3.16
4716 4844 8.492748 TGAACGTACAATGTTCTTTATCTTGTC 58.507 33.333 11.97 0.00 42.90 3.18
4717 4845 7.956420 ACGTACAATGTTCTTTATCTTGTCA 57.044 32.000 0.00 0.00 32.66 3.58
4718 4846 8.547967 ACGTACAATGTTCTTTATCTTGTCAT 57.452 30.769 0.00 0.00 32.66 3.06
4719 4847 8.443160 ACGTACAATGTTCTTTATCTTGTCATG 58.557 33.333 0.00 0.00 32.66 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 8.284693 GCACAATTATGCTTCATGTTTCTTTTT 58.715 29.630 0.26 0.00 42.62 1.94
58 59 7.799784 GCACAATTATGCTTCATGTTTCTTTT 58.200 30.769 0.26 0.00 42.62 2.27
59 60 7.355332 GCACAATTATGCTTCATGTTTCTTT 57.645 32.000 0.26 0.00 42.62 2.52
60 61 6.956299 GCACAATTATGCTTCATGTTTCTT 57.044 33.333 0.26 0.00 42.62 2.52
72 73 9.493206 CAAAAATATGGAAAAGCACAATTATGC 57.507 29.630 0.00 0.00 46.50 3.14
75 76 9.770097 TCACAAAAATATGGAAAAGCACAATTA 57.230 25.926 0.00 0.00 0.00 1.40
76 77 8.674263 TCACAAAAATATGGAAAAGCACAATT 57.326 26.923 0.00 0.00 0.00 2.32
77 78 8.674263 TTCACAAAAATATGGAAAAGCACAAT 57.326 26.923 0.00 0.00 0.00 2.71
78 79 7.254727 GCTTCACAAAAATATGGAAAAGCACAA 60.255 33.333 0.00 0.00 35.30 3.33
79 80 6.202570 GCTTCACAAAAATATGGAAAAGCACA 59.797 34.615 0.00 0.00 35.30 4.57
80 81 6.202570 TGCTTCACAAAAATATGGAAAAGCAC 59.797 34.615 0.00 0.00 37.81 4.40
81 82 6.202570 GTGCTTCACAAAAATATGGAAAAGCA 59.797 34.615 0.00 0.00 39.09 3.91
82 83 6.202570 TGTGCTTCACAAAAATATGGAAAAGC 59.797 34.615 0.00 0.00 41.69 3.51
83 84 7.712264 TGTGCTTCACAAAAATATGGAAAAG 57.288 32.000 0.00 0.00 41.69 2.27
114 115 3.701530 TTCACAGCGCGCGTGAAG 61.702 61.111 40.39 28.23 45.85 3.02
116 117 3.041351 ATTTCACAGCGCGCGTGA 61.041 55.556 36.53 36.53 41.53 4.35
117 118 2.866510 CATTTCACAGCGCGCGTG 60.867 61.111 34.20 34.20 35.63 5.34
118 119 4.741781 GCATTTCACAGCGCGCGT 62.742 61.111 32.35 23.12 0.00 6.01
119 120 3.933900 AAGCATTTCACAGCGCGCG 62.934 57.895 28.44 28.44 35.48 6.86
120 121 2.126734 AAGCATTTCACAGCGCGC 60.127 55.556 26.66 26.66 35.48 6.86
121 122 1.207339 TGAAGCATTTCACAGCGCG 59.793 52.632 0.00 0.00 38.37 6.86
128 129 1.266718 GCTTGGACGTGAAGCATTTCA 59.733 47.619 19.35 0.00 44.43 2.69
129 130 1.969103 GCTTGGACGTGAAGCATTTC 58.031 50.000 19.35 0.00 44.43 2.17
134 135 0.317020 GTTGTGCTTGGACGTGAAGC 60.317 55.000 18.02 18.02 45.12 3.86
135 136 1.261619 GAGTTGTGCTTGGACGTGAAG 59.738 52.381 0.00 0.00 0.00 3.02
136 137 1.295792 GAGTTGTGCTTGGACGTGAA 58.704 50.000 0.00 0.00 0.00 3.18
137 138 0.531974 GGAGTTGTGCTTGGACGTGA 60.532 55.000 0.00 0.00 0.00 4.35
138 139 0.813610 TGGAGTTGTGCTTGGACGTG 60.814 55.000 0.00 0.00 0.00 4.49
139 140 0.107410 TTGGAGTTGTGCTTGGACGT 60.107 50.000 0.00 0.00 0.00 4.34
140 141 1.021202 TTTGGAGTTGTGCTTGGACG 58.979 50.000 0.00 0.00 0.00 4.79
141 142 3.518634 TTTTTGGAGTTGTGCTTGGAC 57.481 42.857 0.00 0.00 0.00 4.02
142 143 3.703556 TCATTTTTGGAGTTGTGCTTGGA 59.296 39.130 0.00 0.00 0.00 3.53
143 144 4.053295 CTCATTTTTGGAGTTGTGCTTGG 58.947 43.478 0.00 0.00 0.00 3.61
144 145 4.505191 CACTCATTTTTGGAGTTGTGCTTG 59.495 41.667 0.00 0.00 42.77 4.01
145 146 4.160252 ACACTCATTTTTGGAGTTGTGCTT 59.840 37.500 0.00 0.00 42.77 3.91
146 147 3.701040 ACACTCATTTTTGGAGTTGTGCT 59.299 39.130 0.00 0.00 42.77 4.40
147 148 4.045636 ACACTCATTTTTGGAGTTGTGC 57.954 40.909 0.00 0.00 42.77 4.57
148 149 6.618287 TCTACACTCATTTTTGGAGTTGTG 57.382 37.500 0.00 0.00 42.77 3.33
149 150 7.639113 TTTCTACACTCATTTTTGGAGTTGT 57.361 32.000 0.00 0.00 42.77 3.32
150 151 8.807581 GTTTTTCTACACTCATTTTTGGAGTTG 58.192 33.333 0.00 0.00 42.77 3.16
151 152 7.979537 GGTTTTTCTACACTCATTTTTGGAGTT 59.020 33.333 0.00 0.00 42.77 3.01
152 153 7.123547 TGGTTTTTCTACACTCATTTTTGGAGT 59.876 33.333 0.00 0.00 46.11 3.85
153 154 7.488322 TGGTTTTTCTACACTCATTTTTGGAG 58.512 34.615 0.00 0.00 38.36 3.86
154 155 7.411486 TGGTTTTTCTACACTCATTTTTGGA 57.589 32.000 0.00 0.00 0.00 3.53
155 156 8.485976 TTTGGTTTTTCTACACTCATTTTTGG 57.514 30.769 0.00 0.00 0.00 3.28
201 202 9.915629 GGGTTTTTCAACTTTTATTTTTGGTTT 57.084 25.926 0.00 0.00 32.90 3.27
202 203 8.524487 GGGGTTTTTCAACTTTTATTTTTGGTT 58.476 29.630 0.00 0.00 32.90 3.67
203 204 7.670140 TGGGGTTTTTCAACTTTTATTTTTGGT 59.330 29.630 0.00 0.00 32.90 3.67
204 205 8.056407 TGGGGTTTTTCAACTTTTATTTTTGG 57.944 30.769 0.00 0.00 32.90 3.28
205 206 9.914131 TTTGGGGTTTTTCAACTTTTATTTTTG 57.086 25.926 0.00 0.00 32.90 2.44
207 208 9.521841 TCTTTGGGGTTTTTCAACTTTTATTTT 57.478 25.926 0.00 0.00 32.90 1.82
208 209 8.952278 GTCTTTGGGGTTTTTCAACTTTTATTT 58.048 29.630 0.00 0.00 32.90 1.40
209 210 8.325787 AGTCTTTGGGGTTTTTCAACTTTTATT 58.674 29.630 0.00 0.00 32.90 1.40
210 211 7.857456 AGTCTTTGGGGTTTTTCAACTTTTAT 58.143 30.769 0.00 0.00 32.90 1.40
211 212 7.247456 AGTCTTTGGGGTTTTTCAACTTTTA 57.753 32.000 0.00 0.00 32.90 1.52
212 213 6.121776 AGTCTTTGGGGTTTTTCAACTTTT 57.878 33.333 0.00 0.00 32.90 2.27
213 214 5.623596 CGAGTCTTTGGGGTTTTTCAACTTT 60.624 40.000 0.00 0.00 32.90 2.66
214 215 4.142249 CGAGTCTTTGGGGTTTTTCAACTT 60.142 41.667 0.00 0.00 32.90 2.66
215 216 3.380320 CGAGTCTTTGGGGTTTTTCAACT 59.620 43.478 0.00 0.00 32.90 3.16
216 217 3.129813 ACGAGTCTTTGGGGTTTTTCAAC 59.870 43.478 0.00 0.00 0.00 3.18
217 218 3.129638 CACGAGTCTTTGGGGTTTTTCAA 59.870 43.478 0.00 0.00 0.00 2.69
218 219 2.685897 CACGAGTCTTTGGGGTTTTTCA 59.314 45.455 0.00 0.00 0.00 2.69
219 220 2.543031 GCACGAGTCTTTGGGGTTTTTC 60.543 50.000 0.00 0.00 0.00 2.29
220 221 1.407618 GCACGAGTCTTTGGGGTTTTT 59.592 47.619 0.00 0.00 0.00 1.94
221 222 1.029681 GCACGAGTCTTTGGGGTTTT 58.970 50.000 0.00 0.00 0.00 2.43
222 223 0.106918 TGCACGAGTCTTTGGGGTTT 60.107 50.000 0.00 0.00 0.00 3.27
223 224 0.106918 TTGCACGAGTCTTTGGGGTT 60.107 50.000 0.00 0.00 0.00 4.11
224 225 0.106918 TTTGCACGAGTCTTTGGGGT 60.107 50.000 0.00 0.00 0.00 4.95
225 226 1.028905 TTTTGCACGAGTCTTTGGGG 58.971 50.000 0.00 0.00 0.00 4.96
226 227 2.543653 CCTTTTTGCACGAGTCTTTGGG 60.544 50.000 0.00 0.00 0.00 4.12
227 228 2.099098 ACCTTTTTGCACGAGTCTTTGG 59.901 45.455 0.00 0.00 0.00 3.28
228 229 3.420839 ACCTTTTTGCACGAGTCTTTG 57.579 42.857 0.00 0.00 0.00 2.77
229 230 4.196971 AGTACCTTTTTGCACGAGTCTTT 58.803 39.130 0.00 0.00 0.00 2.52
230 231 3.805207 AGTACCTTTTTGCACGAGTCTT 58.195 40.909 0.00 0.00 0.00 3.01
231 232 3.470645 AGTACCTTTTTGCACGAGTCT 57.529 42.857 0.00 0.00 0.00 3.24
232 233 3.059120 GGAAGTACCTTTTTGCACGAGTC 60.059 47.826 0.00 0.00 35.41 3.36
233 234 2.876550 GGAAGTACCTTTTTGCACGAGT 59.123 45.455 0.00 0.00 35.41 4.18
234 235 3.537793 GGAAGTACCTTTTTGCACGAG 57.462 47.619 0.00 0.00 35.41 4.18
246 247 8.538409 TTGTATTTTAGAACGAAGGAAGTACC 57.462 34.615 0.00 0.00 39.35 3.34
247 248 8.654215 CCTTGTATTTTAGAACGAAGGAAGTAC 58.346 37.037 0.00 0.00 31.27 2.73
248 249 8.370182 ACCTTGTATTTTAGAACGAAGGAAGTA 58.630 33.333 0.00 0.00 32.69 2.24
249 250 7.172703 CACCTTGTATTTTAGAACGAAGGAAGT 59.827 37.037 0.00 0.00 32.69 3.01
250 251 7.172703 ACACCTTGTATTTTAGAACGAAGGAAG 59.827 37.037 0.00 0.00 32.69 3.46
251 252 6.993902 ACACCTTGTATTTTAGAACGAAGGAA 59.006 34.615 0.00 0.00 32.69 3.36
252 253 6.527423 ACACCTTGTATTTTAGAACGAAGGA 58.473 36.000 0.00 0.00 32.69 3.36
253 254 6.796705 ACACCTTGTATTTTAGAACGAAGG 57.203 37.500 0.00 0.00 33.66 3.46
316 317 1.183549 AGGACGACCCATGAGTACAC 58.816 55.000 0.00 0.00 37.41 2.90
333 334 3.437049 CGTCTGGGCTTAAGAGAAAAAGG 59.563 47.826 6.67 0.00 0.00 3.11
364 366 4.033709 GCTAGATCCAGGCCCAGAATATA 58.966 47.826 0.00 0.00 0.00 0.86
375 377 0.324285 GATGGGCAGCTAGATCCAGG 59.676 60.000 0.00 0.00 32.30 4.45
387 389 1.252904 GGCTTTGCTTGAGATGGGCA 61.253 55.000 0.00 0.00 0.00 5.36
411 413 1.141881 ATGAAGGGTCGTGCTAGCG 59.858 57.895 10.77 0.00 0.00 4.26
415 425 2.045926 GCCATGAAGGGTCGTGCT 60.046 61.111 0.00 0.00 39.16 4.40
419 429 2.124570 CTGGGCCATGAAGGGTCG 60.125 66.667 6.72 0.00 38.09 4.79
426 436 4.408821 GTCGTGCCTGGGCCATGA 62.409 66.667 13.44 5.67 41.09 3.07
485 495 3.488467 CTCTAGGCCCAGGCATGGC 62.488 68.421 13.13 12.14 46.19 4.40
609 620 0.454452 GGACCGCATGTTTTTCGAGC 60.454 55.000 0.00 0.00 0.00 5.03
612 623 0.729140 GCTGGACCGCATGTTTTTCG 60.729 55.000 0.00 0.00 0.00 3.46
613 624 0.729140 CGCTGGACCGCATGTTTTTC 60.729 55.000 8.64 0.00 0.00 2.29
632 643 1.129811 GGTACATGGCACGTTTAGCAC 59.870 52.381 0.00 0.00 0.00 4.40
647 658 4.829872 AGTTATCAAATGGACCGGTACA 57.170 40.909 24.86 24.86 0.00 2.90
650 661 4.945543 GGTTTAGTTATCAAATGGACCGGT 59.054 41.667 6.92 6.92 0.00 5.28
662 673 2.028883 GCGCAGACACGGTTTAGTTATC 59.971 50.000 0.30 0.00 0.00 1.75
682 693 4.803426 CGTGCCTCACTCCTCCGC 62.803 72.222 0.00 0.00 31.34 5.54
684 695 4.803426 CGCGTGCCTCACTCCTCC 62.803 72.222 0.00 0.00 31.34 4.30
751 762 0.666913 CTGCTAATCATGCCTGGCAC 59.333 55.000 25.99 9.99 43.04 5.01
860 871 3.254657 AGCGGATTCGGTTCAAAATTTGA 59.745 39.130 4.03 4.03 45.47 2.69
1224 1253 2.087009 CGACCGGCGAGTTCAGTTC 61.087 63.158 9.30 0.00 44.57 3.01
1226 1255 3.264866 GACGACCGGCGAGTTCAGT 62.265 63.158 22.10 6.69 44.57 3.41
1227 1256 2.504244 GACGACCGGCGAGTTCAG 60.504 66.667 22.10 3.56 44.57 3.02
1228 1257 4.047059 GGACGACCGGCGAGTTCA 62.047 66.667 22.10 0.00 44.57 3.18
1288 1317 1.113788 AACAATTGGCACTGCACAGT 58.886 45.000 10.83 0.00 43.61 3.55
1298 1327 2.745281 TGAACCGTAGCTAACAATTGGC 59.255 45.455 10.83 3.64 37.42 4.52
1324 1358 4.680237 TCAACAGGCTCGCCACCG 62.680 66.667 11.02 0.72 38.92 4.94
1336 1370 8.715191 ACAAACTTAGATTTGCAAATTCAACA 57.285 26.923 24.81 7.93 42.29 3.33
1340 1374 9.424659 CACAAACAAACTTAGATTTGCAAATTC 57.575 29.630 24.81 17.14 42.29 2.17
1380 1414 0.905357 AACTAATCAGCCTCAGCCGT 59.095 50.000 0.00 0.00 41.25 5.68
1391 1426 2.224744 TGCAGCCCAAGTCAACTAATCA 60.225 45.455 0.00 0.00 0.00 2.57
1400 1447 0.108138 ATCGTAGTGCAGCCCAAGTC 60.108 55.000 0.00 0.00 0.00 3.01
1432 1484 1.030457 CCAGCCCTTTCATCAGCATC 58.970 55.000 0.00 0.00 0.00 3.91
1449 1501 8.812513 AGATGAATCAGTAAAATCAATCACCA 57.187 30.769 0.00 0.00 0.00 4.17
1450 1502 9.118300 AGAGATGAATCAGTAAAATCAATCACC 57.882 33.333 0.00 0.00 0.00 4.02
1507 1559 1.613630 TCCCCTGAGCTGGTCCTTC 60.614 63.158 4.17 0.00 0.00 3.46
1738 1796 3.070734 AGTTGGGCTGCAGAGATAGTATG 59.929 47.826 20.43 0.00 0.00 2.39
1818 1876 1.375268 GCCTCTGAGCTGCTCGTTT 60.375 57.895 23.35 0.00 32.35 3.60
1875 1933 3.738282 GGAGCTGATGTGATATGACGTTC 59.262 47.826 0.00 0.00 0.00 3.95
2393 2465 6.815089 ACTTTGCATGTCCACTTTATTGAAA 58.185 32.000 0.00 0.00 0.00 2.69
2467 2539 6.058183 AGATAAGAAACTTGCAACTCACAGT 58.942 36.000 0.00 0.00 0.00 3.55
2524 2597 8.770438 AAGAGAATGAGAACTTTGATGAGTAC 57.230 34.615 0.00 0.00 0.00 2.73
2665 2738 0.546122 ATACCTTTGATGCCAGCCGA 59.454 50.000 0.00 0.00 0.00 5.54
2699 2772 6.349363 GGGAAAATGGACTTGATACAGTTCAC 60.349 42.308 0.00 0.00 34.94 3.18
2822 2895 9.823647 TTATGAAGCAAATTGGTTGAAACTTAA 57.176 25.926 15.53 6.81 38.31 1.85
2826 2899 8.309163 TGATTATGAAGCAAATTGGTTGAAAC 57.691 30.769 15.53 6.23 38.31 2.78
2831 2904 7.669427 TCAGTTGATTATGAAGCAAATTGGTT 58.331 30.769 10.40 10.40 38.67 3.67
2841 2914 6.325596 TCTCGACACTCAGTTGATTATGAAG 58.674 40.000 0.00 0.00 39.88 3.02
2844 2917 6.268566 TCATCTCGACACTCAGTTGATTATG 58.731 40.000 0.00 0.00 39.88 1.90
2867 2940 5.295292 CCCATCATACAGACATGACAAGTTC 59.705 44.000 0.00 0.00 37.74 3.01
2954 3034 4.485024 AGATTACGCTATACAGACACGG 57.515 45.455 0.00 0.00 0.00 4.94
2986 3067 9.941325 AAACTAAATCATGATTGCATTACCAAA 57.059 25.926 21.39 0.00 30.68 3.28
3029 3110 5.935945 TCAGTTAAATGAAGTGGAGTTCCA 58.064 37.500 2.54 0.00 45.30 3.53
3114 3195 3.829886 TGGCATTTCTTTCAGTTAGCG 57.170 42.857 0.00 0.00 0.00 4.26
3184 3273 6.398918 ATTGCTCGTTATGAGAAAGTACACT 58.601 36.000 5.52 0.00 45.64 3.55
3201 3290 4.180817 TGTACCATGTTCAGTATTGCTCG 58.819 43.478 0.00 0.00 0.00 5.03
3238 3327 4.259356 AGTAAGATAGGCAACCCGTTTTC 58.741 43.478 0.00 0.00 35.76 2.29
3270 3359 7.172190 CACATTTACATCTCCACATGGTAGATC 59.828 40.741 0.00 0.00 33.11 2.75
3329 3424 1.071605 GCAGACGGTACAAGCAGAAG 58.928 55.000 0.00 0.00 0.00 2.85
3342 3437 1.450312 GGATGAACCCCTGCAGACG 60.450 63.158 17.39 6.89 0.00 4.18
3486 3582 1.667830 CCTCTCTTTGCACGCGGAA 60.668 57.895 12.47 0.00 0.00 4.30
3488 3584 2.357517 ACCTCTCTTTGCACGCGG 60.358 61.111 12.47 0.00 0.00 6.46
3577 3673 2.690840 AGGGGGTGATATGGTGTACTC 58.309 52.381 0.00 0.00 0.00 2.59
3592 3688 0.541863 CTAGCAGTGTACCAAGGGGG 59.458 60.000 0.00 0.00 44.81 5.40
3598 3694 4.221924 TGATAAACAGCTAGCAGTGTACCA 59.778 41.667 18.83 9.11 0.00 3.25
3723 3834 1.886542 GCCCAGGTGGTTTTTGTCTAG 59.113 52.381 0.00 0.00 36.04 2.43
3886 3999 2.354259 CATGTTGAGAGGACCAGAAGC 58.646 52.381 0.00 0.00 0.00 3.86
3925 4051 4.174009 TGCTTAACTTCGCTGTACAGATC 58.826 43.478 27.08 8.71 0.00 2.75
3950 4076 3.666334 CAGCGCTCGTCAAAGATATACTC 59.334 47.826 7.13 0.00 0.00 2.59
4099 4227 3.242739 GGCCGAATAAATAGCACACAGTG 60.243 47.826 0.00 0.00 36.51 3.66
4136 4264 2.105477 TCCCTCTGCATCAGAAATAGGC 59.895 50.000 0.00 0.00 40.18 3.93
4206 4334 3.062763 CACTATTGCTGGCCTCGATAAG 58.937 50.000 3.32 0.00 0.00 1.73
4207 4335 2.806745 GCACTATTGCTGGCCTCGATAA 60.807 50.000 3.32 0.00 46.17 1.75
4208 4336 1.270305 GCACTATTGCTGGCCTCGATA 60.270 52.381 3.32 4.90 46.17 2.92
4209 4337 0.533755 GCACTATTGCTGGCCTCGAT 60.534 55.000 3.32 3.87 46.17 3.59
4210 4338 1.153369 GCACTATTGCTGGCCTCGA 60.153 57.895 3.32 0.00 46.17 4.04
4211 4339 3.414272 GCACTATTGCTGGCCTCG 58.586 61.111 3.32 0.00 46.17 4.63
4220 4348 4.445452 AGCTGTTTTGATGGCACTATTG 57.555 40.909 0.00 0.00 0.00 1.90
4221 4349 7.880160 TTATAGCTGTTTTGATGGCACTATT 57.120 32.000 0.00 0.00 0.00 1.73
4222 4350 7.880160 TTTATAGCTGTTTTGATGGCACTAT 57.120 32.000 0.00 0.00 0.00 2.12
4223 4351 7.880160 ATTTATAGCTGTTTTGATGGCACTA 57.120 32.000 0.00 0.00 0.00 2.74
4224 4352 6.780457 ATTTATAGCTGTTTTGATGGCACT 57.220 33.333 0.00 0.00 0.00 4.40
4225 4353 8.807581 GTTTATTTATAGCTGTTTTGATGGCAC 58.192 33.333 0.00 0.00 0.00 5.01
4226 4354 7.978975 GGTTTATTTATAGCTGTTTTGATGGCA 59.021 33.333 0.00 0.00 0.00 4.92
4227 4355 8.197439 AGGTTTATTTATAGCTGTTTTGATGGC 58.803 33.333 0.00 0.00 0.00 4.40
4228 4356 9.520204 CAGGTTTATTTATAGCTGTTTTGATGG 57.480 33.333 0.00 0.00 35.67 3.51
4247 4375 8.931568 GGAGGGAGTACTTATTATTCAGGTTTA 58.068 37.037 0.00 0.00 0.00 2.01
4248 4376 7.418712 CGGAGGGAGTACTTATTATTCAGGTTT 60.419 40.741 0.00 0.00 0.00 3.27
4249 4377 6.041751 CGGAGGGAGTACTTATTATTCAGGTT 59.958 42.308 0.00 0.00 0.00 3.50
4250 4378 5.539193 CGGAGGGAGTACTTATTATTCAGGT 59.461 44.000 0.00 0.00 0.00 4.00
4251 4379 5.539193 ACGGAGGGAGTACTTATTATTCAGG 59.461 44.000 0.00 0.00 0.00 3.86
4252 4380 6.651975 ACGGAGGGAGTACTTATTATTCAG 57.348 41.667 0.00 0.00 0.00 3.02
4253 4381 7.427989 AAACGGAGGGAGTACTTATTATTCA 57.572 36.000 0.00 0.00 0.00 2.57
4254 4382 8.728337 AAAAACGGAGGGAGTACTTATTATTC 57.272 34.615 0.00 0.00 0.00 1.75
4259 4387 9.605275 GTAAATAAAAACGGAGGGAGTACTTAT 57.395 33.333 0.00 0.00 0.00 1.73
4260 4388 8.815912 AGTAAATAAAAACGGAGGGAGTACTTA 58.184 33.333 0.00 0.00 0.00 2.24
4261 4389 7.683578 AGTAAATAAAAACGGAGGGAGTACTT 58.316 34.615 0.00 0.00 0.00 2.24
4262 4390 7.179872 AGAGTAAATAAAAACGGAGGGAGTACT 59.820 37.037 0.00 0.00 0.00 2.73
4263 4391 7.277319 CAGAGTAAATAAAAACGGAGGGAGTAC 59.723 40.741 0.00 0.00 0.00 2.73
4264 4392 7.325694 CAGAGTAAATAAAAACGGAGGGAGTA 58.674 38.462 0.00 0.00 0.00 2.59
4265 4393 6.171213 CAGAGTAAATAAAAACGGAGGGAGT 58.829 40.000 0.00 0.00 0.00 3.85
4266 4394 5.064834 GCAGAGTAAATAAAAACGGAGGGAG 59.935 44.000 0.00 0.00 0.00 4.30
4267 4395 4.939439 GCAGAGTAAATAAAAACGGAGGGA 59.061 41.667 0.00 0.00 0.00 4.20
4268 4396 4.201783 CGCAGAGTAAATAAAAACGGAGGG 60.202 45.833 0.00 0.00 0.00 4.30
4269 4397 4.390909 ACGCAGAGTAAATAAAAACGGAGG 59.609 41.667 0.00 0.00 0.00 4.30
4270 4398 5.526010 ACGCAGAGTAAATAAAAACGGAG 57.474 39.130 0.00 0.00 0.00 4.63
4271 4399 7.599630 AATACGCAGAGTAAATAAAAACGGA 57.400 32.000 0.00 0.00 39.04 4.69
4272 4400 7.581600 GCTAATACGCAGAGTAAATAAAAACGG 59.418 37.037 0.00 0.00 39.04 4.44
4273 4401 8.325997 AGCTAATACGCAGAGTAAATAAAAACG 58.674 33.333 0.00 0.00 39.04 3.60
4274 4402 9.983804 AAGCTAATACGCAGAGTAAATAAAAAC 57.016 29.630 0.00 0.00 39.04 2.43
4279 4407 9.674824 GACTAAAGCTAATACGCAGAGTAAATA 57.325 33.333 0.00 0.00 39.04 1.40
4280 4408 8.195436 TGACTAAAGCTAATACGCAGAGTAAAT 58.805 33.333 0.00 0.00 39.04 1.40
4281 4409 7.541162 TGACTAAAGCTAATACGCAGAGTAAA 58.459 34.615 0.00 0.00 39.04 2.01
4282 4410 7.092137 TGACTAAAGCTAATACGCAGAGTAA 57.908 36.000 0.00 0.00 39.04 2.24
4283 4411 6.688637 TGACTAAAGCTAATACGCAGAGTA 57.311 37.500 0.00 0.00 40.03 2.59
4284 4412 5.578005 TGACTAAAGCTAATACGCAGAGT 57.422 39.130 0.00 0.00 0.00 3.24
4285 4413 6.531948 ACTTTGACTAAAGCTAATACGCAGAG 59.468 38.462 0.00 0.00 45.72 3.35
4286 4414 6.395629 ACTTTGACTAAAGCTAATACGCAGA 58.604 36.000 0.00 0.00 45.72 4.26
4287 4415 6.310467 TGACTTTGACTAAAGCTAATACGCAG 59.690 38.462 0.00 0.00 45.72 5.18
4288 4416 6.160684 TGACTTTGACTAAAGCTAATACGCA 58.839 36.000 0.00 0.00 45.72 5.24
4289 4417 6.642683 TGACTTTGACTAAAGCTAATACGC 57.357 37.500 0.00 0.00 45.72 4.42
4290 4418 8.709646 AGTTTGACTTTGACTAAAGCTAATACG 58.290 33.333 0.00 0.00 45.72 3.06
4370 4498 9.685276 TGTGGAAGTACATTTGATAATGAATCT 57.315 29.630 4.99 0.00 43.12 2.40
4373 4501 9.460019 TGATGTGGAAGTACATTTGATAATGAA 57.540 29.630 4.99 0.00 43.12 2.57
4374 4502 9.631257 ATGATGTGGAAGTACATTTGATAATGA 57.369 29.630 4.99 0.00 43.12 2.57
4436 4564 9.856162 ACTTCCTAAAGTTTGACCAAGTTTATA 57.144 29.630 0.00 0.00 43.28 0.98
4437 4565 8.762481 ACTTCCTAAAGTTTGACCAAGTTTAT 57.238 30.769 0.00 0.00 43.28 1.40
4465 4593 7.261325 TCTGCATATTAGAGTTGACTGAAGTC 58.739 38.462 3.41 3.41 44.97 3.01
4466 4594 7.175347 TCTGCATATTAGAGTTGACTGAAGT 57.825 36.000 0.00 0.00 0.00 3.01
4467 4595 7.697352 CTCTGCATATTAGAGTTGACTGAAG 57.303 40.000 5.84 0.00 37.48 3.02
4481 4609 8.621286 CCTCCGTTTTTATTTACTCTGCATATT 58.379 33.333 0.00 0.00 0.00 1.28
4482 4610 7.228706 CCCTCCGTTTTTATTTACTCTGCATAT 59.771 37.037 0.00 0.00 0.00 1.78
4483 4611 6.540914 CCCTCCGTTTTTATTTACTCTGCATA 59.459 38.462 0.00 0.00 0.00 3.14
4484 4612 5.357032 CCCTCCGTTTTTATTTACTCTGCAT 59.643 40.000 0.00 0.00 0.00 3.96
4485 4613 4.698304 CCCTCCGTTTTTATTTACTCTGCA 59.302 41.667 0.00 0.00 0.00 4.41
4486 4614 4.095932 CCCCTCCGTTTTTATTTACTCTGC 59.904 45.833 0.00 0.00 0.00 4.26
4487 4615 4.638865 CCCCCTCCGTTTTTATTTACTCTG 59.361 45.833 0.00 0.00 0.00 3.35
4488 4616 4.290459 ACCCCCTCCGTTTTTATTTACTCT 59.710 41.667 0.00 0.00 0.00 3.24
4489 4617 4.592942 ACCCCCTCCGTTTTTATTTACTC 58.407 43.478 0.00 0.00 0.00 2.59
4490 4618 4.662966 ACCCCCTCCGTTTTTATTTACT 57.337 40.909 0.00 0.00 0.00 2.24
4491 4619 5.500234 AGTACCCCCTCCGTTTTTATTTAC 58.500 41.667 0.00 0.00 0.00 2.01
4492 4620 5.777526 AGTACCCCCTCCGTTTTTATTTA 57.222 39.130 0.00 0.00 0.00 1.40
4493 4621 4.662966 AGTACCCCCTCCGTTTTTATTT 57.337 40.909 0.00 0.00 0.00 1.40
4494 4622 4.290459 AGAAGTACCCCCTCCGTTTTTATT 59.710 41.667 0.00 0.00 0.00 1.40
4495 4623 3.848377 AGAAGTACCCCCTCCGTTTTTAT 59.152 43.478 0.00 0.00 0.00 1.40
4496 4624 3.250617 AGAAGTACCCCCTCCGTTTTTA 58.749 45.455 0.00 0.00 0.00 1.52
4497 4625 2.060275 AGAAGTACCCCCTCCGTTTTT 58.940 47.619 0.00 0.00 0.00 1.94
4498 4626 1.738474 AGAAGTACCCCCTCCGTTTT 58.262 50.000 0.00 0.00 0.00 2.43
4499 4627 1.627329 GAAGAAGTACCCCCTCCGTTT 59.373 52.381 0.00 0.00 0.00 3.60
4500 4628 1.273759 GAAGAAGTACCCCCTCCGTT 58.726 55.000 0.00 0.00 0.00 4.44
4501 4629 0.115745 TGAAGAAGTACCCCCTCCGT 59.884 55.000 0.00 0.00 0.00 4.69
4502 4630 0.824759 CTGAAGAAGTACCCCCTCCG 59.175 60.000 0.00 0.00 0.00 4.63
4503 4631 1.205055 CCTGAAGAAGTACCCCCTCC 58.795 60.000 0.00 0.00 0.00 4.30
4504 4632 1.205055 CCCTGAAGAAGTACCCCCTC 58.795 60.000 0.00 0.00 0.00 4.30
4505 4633 0.797579 TCCCTGAAGAAGTACCCCCT 59.202 55.000 0.00 0.00 0.00 4.79
4506 4634 0.910338 GTCCCTGAAGAAGTACCCCC 59.090 60.000 0.00 0.00 0.00 5.40
4507 4635 1.652947 TGTCCCTGAAGAAGTACCCC 58.347 55.000 0.00 0.00 0.00 4.95
4508 4636 2.638363 ACTTGTCCCTGAAGAAGTACCC 59.362 50.000 0.00 0.00 0.00 3.69
4509 4637 4.353383 AACTTGTCCCTGAAGAAGTACC 57.647 45.455 0.00 0.00 0.00 3.34
4510 4638 5.699915 GGTAAACTTGTCCCTGAAGAAGTAC 59.300 44.000 0.00 0.00 0.00 2.73
4511 4639 5.605488 AGGTAAACTTGTCCCTGAAGAAGTA 59.395 40.000 0.00 0.00 0.00 2.24
4512 4640 4.412528 AGGTAAACTTGTCCCTGAAGAAGT 59.587 41.667 0.00 0.00 0.00 3.01
4513 4641 4.757149 CAGGTAAACTTGTCCCTGAAGAAG 59.243 45.833 0.00 0.00 45.97 2.85
4514 4642 4.714632 CAGGTAAACTTGTCCCTGAAGAA 58.285 43.478 0.00 0.00 45.97 2.52
4515 4643 4.351874 CAGGTAAACTTGTCCCTGAAGA 57.648 45.455 0.00 0.00 45.97 2.87
4519 4647 7.519032 TTAAATTCAGGTAAACTTGTCCCTG 57.481 36.000 0.00 0.00 44.74 4.45
4520 4648 6.208797 GCTTAAATTCAGGTAAACTTGTCCCT 59.791 38.462 0.00 0.00 0.00 4.20
4521 4649 6.015772 TGCTTAAATTCAGGTAAACTTGTCCC 60.016 38.462 0.00 0.00 0.00 4.46
4522 4650 6.861572 GTGCTTAAATTCAGGTAAACTTGTCC 59.138 38.462 0.00 0.00 0.00 4.02
4523 4651 7.378728 GTGTGCTTAAATTCAGGTAAACTTGTC 59.621 37.037 0.00 0.00 0.00 3.18
4524 4652 7.068226 AGTGTGCTTAAATTCAGGTAAACTTGT 59.932 33.333 0.00 0.00 0.00 3.16
4525 4653 7.425606 AGTGTGCTTAAATTCAGGTAAACTTG 58.574 34.615 0.00 0.00 0.00 3.16
4526 4654 7.582667 AGTGTGCTTAAATTCAGGTAAACTT 57.417 32.000 0.00 0.00 0.00 2.66
4527 4655 7.582667 AAGTGTGCTTAAATTCAGGTAAACT 57.417 32.000 0.00 0.00 32.27 2.66
4528 4656 9.738832 TTAAAGTGTGCTTAAATTCAGGTAAAC 57.261 29.630 0.00 0.00 33.95 2.01
4561 4689 9.953565 AGTACTATTTAAGTTGCCAATAGTTCA 57.046 29.630 16.18 4.02 39.61 3.18
4563 4691 9.392259 GGAGTACTATTTAAGTTGCCAATAGTT 57.608 33.333 16.18 5.78 39.61 2.24
4564 4692 7.991460 GGGAGTACTATTTAAGTTGCCAATAGT 59.009 37.037 15.65 15.65 43.22 2.12
4565 4693 8.211629 AGGGAGTACTATTTAAGTTGCCAATAG 58.788 37.037 0.00 8.62 39.80 1.73
4566 4694 8.097791 AGGGAGTACTATTTAAGTTGCCAATA 57.902 34.615 0.00 0.00 39.80 1.90
4567 4695 6.970191 AGGGAGTACTATTTAAGTTGCCAAT 58.030 36.000 0.00 0.00 39.80 3.16
4568 4696 6.214819 AGAGGGAGTACTATTTAAGTTGCCAA 59.785 38.462 0.00 0.00 39.80 4.52
4569 4697 5.724854 AGAGGGAGTACTATTTAAGTTGCCA 59.275 40.000 0.00 0.00 39.80 4.92
4570 4698 6.049790 CAGAGGGAGTACTATTTAAGTTGCC 58.950 44.000 0.00 0.00 39.80 4.52
4571 4699 6.641474 ACAGAGGGAGTACTATTTAAGTTGC 58.359 40.000 0.00 0.00 39.80 4.17
4572 4700 7.266400 GGACAGAGGGAGTACTATTTAAGTTG 58.734 42.308 0.00 0.00 39.80 3.16
4573 4701 6.383436 GGGACAGAGGGAGTACTATTTAAGTT 59.617 42.308 0.00 0.00 39.80 2.66
4574 4702 5.898397 GGGACAGAGGGAGTACTATTTAAGT 59.102 44.000 0.00 0.00 42.62 2.24
4575 4703 5.897824 TGGGACAGAGGGAGTACTATTTAAG 59.102 44.000 0.00 0.00 0.00 1.85
4576 4704 5.845734 TGGGACAGAGGGAGTACTATTTAA 58.154 41.667 0.00 0.00 0.00 1.52
4577 4705 5.476950 TGGGACAGAGGGAGTACTATTTA 57.523 43.478 0.00 0.00 0.00 1.40
4578 4706 4.348020 TGGGACAGAGGGAGTACTATTT 57.652 45.455 0.00 0.00 0.00 1.40
4594 4722 8.068380 GTCAAAAACGCTCTTATATTATGGGAC 58.932 37.037 0.00 0.00 0.00 4.46
4595 4723 7.771361 TGTCAAAAACGCTCTTATATTATGGGA 59.229 33.333 0.00 0.00 0.00 4.37
4596 4724 7.855904 GTGTCAAAAACGCTCTTATATTATGGG 59.144 37.037 0.00 0.00 35.42 4.00
4597 4725 8.612619 AGTGTCAAAAACGCTCTTATATTATGG 58.387 33.333 0.00 0.00 45.69 2.74
4600 4728 9.865321 ACTAGTGTCAAAAACGCTCTTATATTA 57.135 29.630 0.00 0.00 45.69 0.98
4601 4729 8.656849 CACTAGTGTCAAAAACGCTCTTATATT 58.343 33.333 15.06 0.00 45.69 1.28
4602 4730 7.817962 ACACTAGTGTCAAAAACGCTCTTATAT 59.182 33.333 22.95 0.00 45.69 0.86
4603 4731 7.149973 ACACTAGTGTCAAAAACGCTCTTATA 58.850 34.615 22.95 0.00 45.69 0.98
4604 4732 5.989777 ACACTAGTGTCAAAAACGCTCTTAT 59.010 36.000 22.95 0.00 45.69 1.73
4605 4733 5.353938 ACACTAGTGTCAAAAACGCTCTTA 58.646 37.500 22.95 0.00 45.69 2.10
4606 4734 4.189231 ACACTAGTGTCAAAAACGCTCTT 58.811 39.130 22.95 0.00 45.69 2.85
4607 4735 3.793559 ACACTAGTGTCAAAAACGCTCT 58.206 40.909 22.95 0.00 45.69 4.09
4608 4736 4.743644 ACTACACTAGTGTCAAAAACGCTC 59.256 41.667 31.11 0.00 45.69 5.03
4621 4749 8.822652 ATAAGCGTTTTTAACACTACACTAGT 57.177 30.769 0.00 0.00 40.28 2.57
4634 4762 9.675464 CCCTCCCATAATATATAAGCGTTTTTA 57.325 33.333 0.00 0.00 0.00 1.52
4635 4763 8.387813 TCCCTCCCATAATATATAAGCGTTTTT 58.612 33.333 0.00 0.00 0.00 1.94
4636 4764 7.924541 TCCCTCCCATAATATATAAGCGTTTT 58.075 34.615 0.00 0.00 0.00 2.43
4637 4765 7.365652 CCTCCCTCCCATAATATATAAGCGTTT 60.366 40.741 0.00 0.00 0.00 3.60
4638 4766 6.099845 CCTCCCTCCCATAATATATAAGCGTT 59.900 42.308 0.00 0.00 0.00 4.84
4639 4767 5.602978 CCTCCCTCCCATAATATATAAGCGT 59.397 44.000 0.00 0.00 0.00 5.07
4640 4768 5.012148 CCCTCCCTCCCATAATATATAAGCG 59.988 48.000 0.00 0.00 0.00 4.68
4641 4769 6.151049 TCCCTCCCTCCCATAATATATAAGC 58.849 44.000 0.00 0.00 0.00 3.09
4642 4770 7.374271 ACTCCCTCCCTCCCATAATATATAAG 58.626 42.308 0.00 0.00 0.00 1.73
4643 4771 7.325793 ACTCCCTCCCTCCCATAATATATAA 57.674 40.000 0.00 0.00 0.00 0.98
4644 4772 6.963154 ACTCCCTCCCTCCCATAATATATA 57.037 41.667 0.00 0.00 0.00 0.86
4645 4773 5.858532 ACTCCCTCCCTCCCATAATATAT 57.141 43.478 0.00 0.00 0.00 0.86
4646 4774 5.807086 ACTACTCCCTCCCTCCCATAATATA 59.193 44.000 0.00 0.00 0.00 0.86
4647 4775 4.617469 ACTACTCCCTCCCTCCCATAATAT 59.383 45.833 0.00 0.00 0.00 1.28
4648 4776 4.002050 ACTACTCCCTCCCTCCCATAATA 58.998 47.826 0.00 0.00 0.00 0.98
4649 4777 2.804440 ACTACTCCCTCCCTCCCATAAT 59.196 50.000 0.00 0.00 0.00 1.28
4650 4778 2.233178 ACTACTCCCTCCCTCCCATAA 58.767 52.381 0.00 0.00 0.00 1.90
4651 4779 1.937098 ACTACTCCCTCCCTCCCATA 58.063 55.000 0.00 0.00 0.00 2.74
4652 4780 1.504221 GTACTACTCCCTCCCTCCCAT 59.496 57.143 0.00 0.00 0.00 4.00
4653 4781 0.932211 GTACTACTCCCTCCCTCCCA 59.068 60.000 0.00 0.00 0.00 4.37
4654 4782 1.145531 GAGTACTACTCCCTCCCTCCC 59.854 61.905 5.01 0.00 39.28 4.30
4655 4783 1.851653 TGAGTACTACTCCCTCCCTCC 59.148 57.143 12.79 0.00 44.44 4.30
4656 4784 3.887916 ATGAGTACTACTCCCTCCCTC 57.112 52.381 12.79 0.00 44.44 4.30
4657 4785 4.628661 AAATGAGTACTACTCCCTCCCT 57.371 45.455 12.79 0.00 44.44 4.20
4658 4786 4.101274 GGAAAATGAGTACTACTCCCTCCC 59.899 50.000 12.79 5.30 44.44 4.30
4659 4787 4.963628 AGGAAAATGAGTACTACTCCCTCC 59.036 45.833 12.79 12.06 44.44 4.30
4660 4788 5.422650 ACAGGAAAATGAGTACTACTCCCTC 59.577 44.000 12.79 5.08 44.44 4.30
4661 4789 5.342866 ACAGGAAAATGAGTACTACTCCCT 58.657 41.667 12.79 8.86 44.44 4.20
4662 4790 5.678955 ACAGGAAAATGAGTACTACTCCC 57.321 43.478 12.79 6.96 44.44 4.30
4669 4797 9.916397 CGTTCATTATTACAGGAAAATGAGTAC 57.084 33.333 0.00 0.00 38.98 2.73
4670 4798 9.661563 ACGTTCATTATTACAGGAAAATGAGTA 57.338 29.630 0.00 0.00 38.98 2.59
4671 4799 8.561738 ACGTTCATTATTACAGGAAAATGAGT 57.438 30.769 0.00 0.00 38.98 3.41
4672 4800 9.916397 GTACGTTCATTATTACAGGAAAATGAG 57.084 33.333 0.00 0.00 38.98 2.90
4673 4801 9.438228 TGTACGTTCATTATTACAGGAAAATGA 57.562 29.630 0.00 0.00 36.75 2.57
4677 4805 9.221933 ACATTGTACGTTCATTATTACAGGAAA 57.778 29.630 0.00 0.00 0.00 3.13
4678 4806 8.780846 ACATTGTACGTTCATTATTACAGGAA 57.219 30.769 0.00 0.00 0.00 3.36
4679 4807 8.780846 AACATTGTACGTTCATTATTACAGGA 57.219 30.769 0.00 0.00 0.00 3.86
4680 4808 8.879759 AGAACATTGTACGTTCATTATTACAGG 58.120 33.333 12.68 0.00 44.22 4.00
4688 4816 9.825972 CAAGATAAAGAACATTGTACGTTCATT 57.174 29.630 12.68 9.96 44.22 2.57
4689 4817 8.999431 ACAAGATAAAGAACATTGTACGTTCAT 58.001 29.630 12.68 0.83 44.22 2.57
4690 4818 8.373048 ACAAGATAAAGAACATTGTACGTTCA 57.627 30.769 12.68 0.00 44.22 3.18
4691 4819 8.492748 TGACAAGATAAAGAACATTGTACGTTC 58.507 33.333 0.00 4.49 42.52 3.95
4692 4820 8.373048 TGACAAGATAAAGAACATTGTACGTT 57.627 30.769 0.00 0.00 34.41 3.99
4693 4821 7.956420 TGACAAGATAAAGAACATTGTACGT 57.044 32.000 0.00 0.00 34.41 3.57
4694 4822 8.811794 CATGACAAGATAAAGAACATTGTACG 57.188 34.615 0.00 0.00 34.41 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.