Multiple sequence alignment - TraesCS3D01G534400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G534400 chr3D 100.000 3363 0 0 1 3363 609242315 609238953 0.000000e+00 6211.0
1 TraesCS3D01G534400 chr3D 86.982 169 15 2 419 587 8292015 8292176 2.060000e-42 183.0
2 TraesCS3D01G534400 chr3B 94.170 2693 118 10 707 3363 819957274 819954585 0.000000e+00 4067.0
3 TraesCS3D01G534400 chr3B 78.601 486 74 18 2847 3306 819949609 819949128 9.130000e-76 294.0
4 TraesCS3D01G534400 chr3B 87.135 171 18 3 419 587 10205523 10205691 1.230000e-44 191.0
5 TraesCS3D01G534400 chr3A 94.867 2260 88 13 590 2834 742794132 742791886 0.000000e+00 3506.0
6 TraesCS3D01G534400 chr3A 94.934 533 11 1 2847 3363 742791588 742791056 0.000000e+00 821.0
7 TraesCS3D01G534400 chr3A 96.939 98 3 0 1 98 687031451 687031548 7.460000e-37 165.0
8 TraesCS3D01G534400 chr3A 81.538 195 21 7 147 329 742794372 742794181 2.700000e-31 147.0
9 TraesCS3D01G534400 chr3A 91.803 61 4 1 365 425 742794182 742794123 2.150000e-12 84.2
10 TraesCS3D01G534400 chr4A 92.179 179 12 2 417 594 742423805 742423982 5.570000e-63 252.0
11 TraesCS3D01G534400 chr4A 91.515 165 14 0 2200 2364 152510489 152510325 9.390000e-56 228.0
12 TraesCS3D01G534400 chr1A 92.442 172 13 0 424 595 584997109 584996938 2.590000e-61 246.0
13 TraesCS3D01G534400 chr1A 92.308 169 13 0 420 588 59945362 59945194 1.210000e-59 241.0
14 TraesCS3D01G534400 chr1A 93.878 98 6 0 1 98 360461034 360461131 7.520000e-32 148.0
15 TraesCS3D01G534400 chr4B 84.000 250 38 2 1016 1264 400382305 400382057 4.340000e-59 239.0
16 TraesCS3D01G534400 chr4B 83.938 193 24 3 1659 1845 400370433 400370242 9.590000e-41 178.0
17 TraesCS3D01G534400 chr7D 92.216 167 13 0 424 590 400867380 400867546 1.560000e-58 237.0
18 TraesCS3D01G534400 chr7D 85.870 184 23 3 417 599 580246022 580245841 3.420000e-45 193.0
19 TraesCS3D01G534400 chr7D 94.898 98 5 0 1 98 571008939 571008842 1.620000e-33 154.0
20 TraesCS3D01G534400 chr1D 92.169 166 13 0 424 589 427825886 427826051 5.610000e-58 235.0
21 TraesCS3D01G534400 chr1D 92.121 165 13 0 424 588 414288069 414287905 2.020000e-57 233.0
22 TraesCS3D01G534400 chr1D 75.647 464 77 20 2851 3285 7838913 7839369 7.360000e-47 198.0
23 TraesCS3D01G534400 chr7B 91.617 167 13 1 424 589 746157753 746157587 2.610000e-56 230.0
24 TraesCS3D01G534400 chrUn 91.411 163 14 0 424 586 285730634 285730796 1.210000e-54 224.0
25 TraesCS3D01G534400 chrUn 87.640 178 20 2 419 595 321212143 321212319 4.400000e-49 206.0
26 TraesCS3D01G534400 chr2A 90.964 166 15 0 424 589 11897717 11897882 1.210000e-54 224.0
27 TraesCS3D01G534400 chr2A 93.878 98 6 0 1 98 11897722 11897819 7.520000e-32 148.0
28 TraesCS3D01G534400 chr4D 78.740 381 43 17 1999 2364 320276714 320277071 1.570000e-53 220.0
29 TraesCS3D01G534400 chr5A 87.640 178 20 2 419 595 555237472 555237296 4.400000e-49 206.0
30 TraesCS3D01G534400 chr7A 96.939 98 3 0 1 98 628830844 628830941 7.460000e-37 165.0
31 TraesCS3D01G534400 chr6B 95.918 98 4 0 1 98 643078941 643078844 3.470000e-35 159.0
32 TraesCS3D01G534400 chr2D 93.878 98 6 0 1 98 639533854 639533757 7.520000e-32 148.0
33 TraesCS3D01G534400 chr6D 93.814 97 6 0 2 98 77817898 77817802 2.700000e-31 147.0
34 TraesCS3D01G534400 chr5B 92.929 99 7 0 1 99 93221571 93221473 9.730000e-31 145.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G534400 chr3D 609238953 609242315 3362 True 6211.00 6211 100.0000 1 3363 1 chr3D.!!$R1 3362
1 TraesCS3D01G534400 chr3B 819954585 819957274 2689 True 4067.00 4067 94.1700 707 3363 1 chr3B.!!$R2 2656
2 TraesCS3D01G534400 chr3A 742791056 742794372 3316 True 1139.55 3506 90.7855 147 3363 4 chr3A.!!$R1 3216

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
410 423 0.034186 TTGTCATCATCCCAGGTGGC 60.034 55.0 0.00 0.00 0.00 5.01 F
446 459 0.035056 AGTTTTAGCATGCTCCCGCT 60.035 50.0 26.57 15.51 42.34 5.52 F
459 472 0.038599 TCCCGCTTACCCCCTTTTTC 59.961 55.0 0.00 0.00 0.00 2.29 F
913 928 0.039074 CGAGTGGACAGAAACGAGCT 60.039 55.0 0.00 0.00 0.00 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1682 1710 0.899253 CATTGACCATGGTGGCCACA 60.899 55.000 35.78 22.39 42.67 4.17 R
2294 2322 1.073722 TGAGGAACTTGGCTGCCTG 59.926 57.895 21.03 14.75 41.55 4.85 R
2350 2378 4.706035 AGTCCGACGATCAGTAGTAGAAT 58.294 43.478 0.00 0.00 0.00 2.40 R
2890 3220 2.224281 ACTCTGCCGAACAACAAGATCA 60.224 45.455 0.00 0.00 0.00 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.562506 GTTTTAACATGCTCCCTCTTACC 57.437 43.478 0.00 0.00 0.00 2.85
23 24 5.254115 GTTTTAACATGCTCCCTCTTACCT 58.746 41.667 0.00 0.00 0.00 3.08
24 25 4.755266 TTAACATGCTCCCTCTTACCTC 57.245 45.455 0.00 0.00 0.00 3.85
25 26 1.501582 ACATGCTCCCTCTTACCTCC 58.498 55.000 0.00 0.00 0.00 4.30
26 27 1.008938 ACATGCTCCCTCTTACCTCCT 59.991 52.381 0.00 0.00 0.00 3.69
27 28 1.691434 CATGCTCCCTCTTACCTCCTC 59.309 57.143 0.00 0.00 0.00 3.71
28 29 1.011595 TGCTCCCTCTTACCTCCTCT 58.988 55.000 0.00 0.00 0.00 3.69
29 30 1.362932 TGCTCCCTCTTACCTCCTCTT 59.637 52.381 0.00 0.00 0.00 2.85
30 31 2.225650 TGCTCCCTCTTACCTCCTCTTT 60.226 50.000 0.00 0.00 0.00 2.52
31 32 2.841266 GCTCCCTCTTACCTCCTCTTTT 59.159 50.000 0.00 0.00 0.00 2.27
32 33 3.264706 GCTCCCTCTTACCTCCTCTTTTT 59.735 47.826 0.00 0.00 0.00 1.94
33 34 4.470304 GCTCCCTCTTACCTCCTCTTTTTA 59.530 45.833 0.00 0.00 0.00 1.52
34 35 5.627272 GCTCCCTCTTACCTCCTCTTTTTAC 60.627 48.000 0.00 0.00 0.00 2.01
35 36 5.408824 TCCCTCTTACCTCCTCTTTTTACA 58.591 41.667 0.00 0.00 0.00 2.41
36 37 6.030082 TCCCTCTTACCTCCTCTTTTTACAT 58.970 40.000 0.00 0.00 0.00 2.29
37 38 6.070194 TCCCTCTTACCTCCTCTTTTTACATG 60.070 42.308 0.00 0.00 0.00 3.21
38 39 6.070194 CCCTCTTACCTCCTCTTTTTACATGA 60.070 42.308 0.00 0.00 0.00 3.07
39 40 7.044798 CCTCTTACCTCCTCTTTTTACATGAG 58.955 42.308 0.00 0.00 0.00 2.90
40 41 7.093289 CCTCTTACCTCCTCTTTTTACATGAGA 60.093 40.741 0.00 0.00 0.00 3.27
41 42 7.841956 TCTTACCTCCTCTTTTTACATGAGAG 58.158 38.462 0.00 0.00 37.30 3.20
71 72 9.862371 AGAGTATATAATAAATCTGAGCCGTTG 57.138 33.333 0.00 0.00 0.00 4.10
72 73 9.856488 GAGTATATAATAAATCTGAGCCGTTGA 57.144 33.333 0.00 0.00 0.00 3.18
76 77 7.897575 ATAATAAATCTGAGCCGTTGATCTC 57.102 36.000 0.00 0.00 0.00 2.75
77 78 3.616956 AAATCTGAGCCGTTGATCTCA 57.383 42.857 0.00 0.00 37.70 3.27
78 79 3.834489 AATCTGAGCCGTTGATCTCAT 57.166 42.857 0.00 0.00 38.50 2.90
79 80 3.834489 ATCTGAGCCGTTGATCTCATT 57.166 42.857 0.00 0.00 38.50 2.57
80 81 4.944619 ATCTGAGCCGTTGATCTCATTA 57.055 40.909 0.00 0.00 38.50 1.90
81 82 4.736126 TCTGAGCCGTTGATCTCATTAA 57.264 40.909 0.00 0.00 38.50 1.40
82 83 5.282055 TCTGAGCCGTTGATCTCATTAAT 57.718 39.130 0.00 0.00 38.50 1.40
83 84 5.674525 TCTGAGCCGTTGATCTCATTAATT 58.325 37.500 0.00 0.00 38.50 1.40
84 85 6.816136 TCTGAGCCGTTGATCTCATTAATTA 58.184 36.000 0.00 0.00 38.50 1.40
85 86 6.925718 TCTGAGCCGTTGATCTCATTAATTAG 59.074 38.462 0.00 0.00 38.50 1.73
86 87 6.582636 TGAGCCGTTGATCTCATTAATTAGT 58.417 36.000 0.00 0.00 34.69 2.24
87 88 6.479990 TGAGCCGTTGATCTCATTAATTAGTG 59.520 38.462 1.66 1.66 34.69 2.74
88 89 5.760253 AGCCGTTGATCTCATTAATTAGTGG 59.240 40.000 7.99 0.34 0.00 4.00
89 90 5.527582 GCCGTTGATCTCATTAATTAGTGGT 59.472 40.000 7.99 0.00 0.00 4.16
90 91 6.292919 GCCGTTGATCTCATTAATTAGTGGTC 60.293 42.308 7.99 5.44 0.00 4.02
91 92 6.761242 CCGTTGATCTCATTAATTAGTGGTCA 59.239 38.462 7.99 7.52 0.00 4.02
92 93 7.042456 CCGTTGATCTCATTAATTAGTGGTCAG 60.042 40.741 7.99 0.00 0.00 3.51
93 94 7.706607 CGTTGATCTCATTAATTAGTGGTCAGA 59.293 37.037 7.99 4.65 0.00 3.27
94 95 9.553064 GTTGATCTCATTAATTAGTGGTCAGAT 57.447 33.333 7.99 8.67 0.00 2.90
105 106 7.573968 ATTAGTGGTCAGATTAAGATTTGCC 57.426 36.000 0.00 0.00 0.00 4.52
106 107 3.941483 AGTGGTCAGATTAAGATTTGCCG 59.059 43.478 0.00 0.00 0.00 5.69
107 108 2.682856 TGGTCAGATTAAGATTTGCCGC 59.317 45.455 0.00 0.00 0.00 6.53
108 109 2.033424 GGTCAGATTAAGATTTGCCGCC 59.967 50.000 0.00 0.00 0.00 6.13
109 110 2.033424 GTCAGATTAAGATTTGCCGCCC 59.967 50.000 0.00 0.00 0.00 6.13
110 111 2.092429 TCAGATTAAGATTTGCCGCCCT 60.092 45.455 0.00 0.00 0.00 5.19
111 112 2.689983 CAGATTAAGATTTGCCGCCCTT 59.310 45.455 0.00 0.00 0.00 3.95
112 113 3.882888 CAGATTAAGATTTGCCGCCCTTA 59.117 43.478 0.00 0.00 0.00 2.69
113 114 4.338118 CAGATTAAGATTTGCCGCCCTTAA 59.662 41.667 0.00 0.00 36.10 1.85
114 115 4.953579 AGATTAAGATTTGCCGCCCTTAAA 59.046 37.500 0.00 0.00 35.53 1.52
115 116 5.420739 AGATTAAGATTTGCCGCCCTTAAAA 59.579 36.000 0.00 0.00 35.53 1.52
116 117 5.669164 TTAAGATTTGCCGCCCTTAAAAT 57.331 34.783 0.00 0.00 30.79 1.82
117 118 6.777213 TTAAGATTTGCCGCCCTTAAAATA 57.223 33.333 0.00 0.00 30.79 1.40
118 119 4.918810 AGATTTGCCGCCCTTAAAATAG 57.081 40.909 0.00 0.00 0.00 1.73
119 120 4.278310 AGATTTGCCGCCCTTAAAATAGT 58.722 39.130 0.00 0.00 0.00 2.12
120 121 4.709886 AGATTTGCCGCCCTTAAAATAGTT 59.290 37.500 0.00 0.00 0.00 2.24
121 122 4.443913 TTTGCCGCCCTTAAAATAGTTC 57.556 40.909 0.00 0.00 0.00 3.01
122 123 3.074675 TGCCGCCCTTAAAATAGTTCA 57.925 42.857 0.00 0.00 0.00 3.18
123 124 3.422796 TGCCGCCCTTAAAATAGTTCAA 58.577 40.909 0.00 0.00 0.00 2.69
124 125 3.442273 TGCCGCCCTTAAAATAGTTCAAG 59.558 43.478 0.00 0.00 0.00 3.02
125 126 3.181490 GCCGCCCTTAAAATAGTTCAAGG 60.181 47.826 0.00 0.00 37.81 3.61
126 127 4.266714 CCGCCCTTAAAATAGTTCAAGGA 58.733 43.478 6.41 0.00 40.02 3.36
127 128 4.095932 CCGCCCTTAAAATAGTTCAAGGAC 59.904 45.833 6.41 0.00 40.02 3.85
128 129 4.095932 CGCCCTTAAAATAGTTCAAGGACC 59.904 45.833 6.41 0.00 40.02 4.46
129 130 5.262009 GCCCTTAAAATAGTTCAAGGACCT 58.738 41.667 6.41 0.00 40.02 3.85
130 131 5.125578 GCCCTTAAAATAGTTCAAGGACCTG 59.874 44.000 6.41 0.00 40.02 4.00
131 132 5.125578 CCCTTAAAATAGTTCAAGGACCTGC 59.874 44.000 6.41 0.00 40.02 4.85
132 133 5.946377 CCTTAAAATAGTTCAAGGACCTGCT 59.054 40.000 0.00 0.00 40.02 4.24
133 134 6.127897 CCTTAAAATAGTTCAAGGACCTGCTG 60.128 42.308 0.00 0.00 40.02 4.41
134 135 4.373156 AAATAGTTCAAGGACCTGCTGT 57.627 40.909 0.00 0.00 0.00 4.40
135 136 2.839486 TAGTTCAAGGACCTGCTGTG 57.161 50.000 0.00 0.00 0.00 3.66
136 137 0.536006 AGTTCAAGGACCTGCTGTGC 60.536 55.000 0.00 0.00 35.12 4.57
137 138 0.819259 GTTCAAGGACCTGCTGTGCA 60.819 55.000 0.00 0.00 37.86 4.57
138 139 0.819259 TTCAAGGACCTGCTGTGCAC 60.819 55.000 10.75 10.75 37.86 4.57
139 140 1.228063 CAAGGACCTGCTGTGCACT 60.228 57.895 19.41 0.00 37.86 4.40
140 141 0.820891 CAAGGACCTGCTGTGCACTT 60.821 55.000 19.41 0.00 37.86 3.16
141 142 0.536006 AAGGACCTGCTGTGCACTTC 60.536 55.000 19.41 10.05 37.86 3.01
142 143 1.227943 GGACCTGCTGTGCACTTCA 60.228 57.895 19.41 14.13 34.99 3.02
143 144 0.819259 GGACCTGCTGTGCACTTCAA 60.819 55.000 19.41 0.00 34.99 2.69
144 145 1.242076 GACCTGCTGTGCACTTCAAT 58.758 50.000 19.41 6.71 33.79 2.57
145 146 1.198637 GACCTGCTGTGCACTTCAATC 59.801 52.381 19.41 11.48 33.79 2.67
150 151 4.201891 CCTGCTGTGCACTTCAATCTAATC 60.202 45.833 19.41 0.00 33.79 1.75
158 159 6.311445 GTGCACTTCAATCTAATCTTCTCGAA 59.689 38.462 10.32 0.00 0.00 3.71
161 162 9.202273 GCACTTCAATCTAATCTTCTCGAATAT 57.798 33.333 0.00 0.00 0.00 1.28
203 204 6.482308 GCAATTTACCACCGACATTCTACTAT 59.518 38.462 0.00 0.00 0.00 2.12
204 205 7.012044 GCAATTTACCACCGACATTCTACTATT 59.988 37.037 0.00 0.00 0.00 1.73
211 212 4.119862 CCGACATTCTACTATTGGTGTGG 58.880 47.826 0.00 0.00 0.00 4.17
212 213 4.142026 CCGACATTCTACTATTGGTGTGGA 60.142 45.833 0.00 0.00 0.00 4.02
213 214 4.804139 CGACATTCTACTATTGGTGTGGAC 59.196 45.833 0.00 0.00 0.00 4.02
222 223 0.537143 TTGGTGTGGACAGGTCATGC 60.537 55.000 1.41 0.00 0.00 4.06
225 226 1.003118 GGTGTGGACAGGTCATGCTAA 59.997 52.381 1.41 0.00 0.00 3.09
236 237 6.604171 ACAGGTCATGCTAATATTTGGATGA 58.396 36.000 23.13 23.13 38.10 2.92
240 241 8.168725 AGGTCATGCTAATATTTGGATGAGAAT 58.831 33.333 25.95 15.89 40.12 2.40
265 266 4.857509 ATACTATTCGGAGTTCTCCAGC 57.142 45.455 17.48 0.00 0.00 4.85
267 268 3.034635 ACTATTCGGAGTTCTCCAGCAT 58.965 45.455 17.48 8.92 0.00 3.79
296 309 0.676736 GCCGAAGAGGAGGATGGTAG 59.323 60.000 0.00 0.00 45.00 3.18
297 310 1.754555 GCCGAAGAGGAGGATGGTAGA 60.755 57.143 0.00 0.00 45.00 2.59
298 311 2.667470 CCGAAGAGGAGGATGGTAGAA 58.333 52.381 0.00 0.00 45.00 2.10
301 314 4.262249 CCGAAGAGGAGGATGGTAGAATTC 60.262 50.000 0.00 0.00 45.00 2.17
311 324 2.112998 TGGTAGAATTCGGACCGGAAT 58.887 47.619 15.25 9.66 38.24 3.01
316 329 2.172717 AGAATTCGGACCGGAATGGAAT 59.827 45.455 15.25 8.68 42.00 3.01
327 340 1.952296 GGAATGGAATACTGGCTGCAG 59.048 52.381 10.11 10.11 0.00 4.41
328 341 1.336125 GAATGGAATACTGGCTGCAGC 59.664 52.381 30.88 30.88 41.14 5.25
329 342 0.816825 ATGGAATACTGGCTGCAGCG 60.817 55.000 31.19 21.13 43.26 5.18
330 343 2.182842 GGAATACTGGCTGCAGCGG 61.183 63.158 31.19 26.50 43.26 5.52
331 344 2.825836 AATACTGGCTGCAGCGGC 60.826 61.111 31.19 18.82 43.26 6.53
332 345 3.335356 AATACTGGCTGCAGCGGCT 62.335 57.895 31.19 17.80 43.26 5.52
333 346 4.765449 TACTGGCTGCAGCGGCTG 62.765 66.667 31.19 25.21 43.26 4.85
335 348 4.765449 CTGGCTGCAGCGGCTGTA 62.765 66.667 31.19 24.34 43.26 2.74
336 349 4.100084 TGGCTGCAGCGGCTGTAT 62.100 61.111 31.19 0.00 43.26 2.29
337 350 3.580193 GGCTGCAGCGGCTGTATG 61.580 66.667 31.19 19.62 43.26 2.39
338 351 3.580193 GCTGCAGCGGCTGTATGG 61.580 66.667 28.88 15.97 41.91 2.74
339 352 2.124983 CTGCAGCGGCTGTATGGT 60.125 61.111 28.88 0.00 41.91 3.55
340 353 2.436469 TGCAGCGGCTGTATGGTG 60.436 61.111 28.88 5.32 41.91 4.17
341 354 3.204827 GCAGCGGCTGTATGGTGG 61.205 66.667 28.88 3.61 36.96 4.61
342 355 2.584064 CAGCGGCTGTATGGTGGA 59.416 61.111 21.60 0.00 0.00 4.02
343 356 1.815421 CAGCGGCTGTATGGTGGAC 60.815 63.158 21.60 0.00 0.00 4.02
344 357 2.890474 GCGGCTGTATGGTGGACG 60.890 66.667 0.00 0.00 0.00 4.79
345 358 2.890474 CGGCTGTATGGTGGACGC 60.890 66.667 0.00 0.00 0.00 5.19
346 359 2.584608 GGCTGTATGGTGGACGCT 59.415 61.111 0.00 0.00 0.00 5.07
347 360 1.815421 GGCTGTATGGTGGACGCTG 60.815 63.158 0.00 0.00 0.00 5.18
348 361 1.815421 GCTGTATGGTGGACGCTGG 60.815 63.158 0.00 0.00 0.00 4.85
349 362 1.897423 CTGTATGGTGGACGCTGGA 59.103 57.895 0.00 0.00 0.00 3.86
350 363 0.249120 CTGTATGGTGGACGCTGGAA 59.751 55.000 0.00 0.00 0.00 3.53
351 364 0.036765 TGTATGGTGGACGCTGGAAC 60.037 55.000 0.00 0.00 0.00 3.62
352 365 0.743345 GTATGGTGGACGCTGGAACC 60.743 60.000 0.00 0.00 0.00 3.62
353 366 1.906105 TATGGTGGACGCTGGAACCC 61.906 60.000 0.00 0.00 31.30 4.11
355 368 3.998672 GTGGACGCTGGAACCCGA 61.999 66.667 0.00 0.00 0.00 5.14
356 369 3.235481 TGGACGCTGGAACCCGAA 61.235 61.111 0.00 0.00 0.00 4.30
357 370 2.434359 GGACGCTGGAACCCGAAG 60.434 66.667 0.00 0.00 0.00 3.79
403 416 2.224281 TGCTACCGATTGTCATCATCCC 60.224 50.000 0.00 0.00 0.00 3.85
404 417 2.224281 GCTACCGATTGTCATCATCCCA 60.224 50.000 0.00 0.00 0.00 4.37
406 419 1.141657 ACCGATTGTCATCATCCCAGG 59.858 52.381 0.00 0.00 0.00 4.45
407 420 1.141657 CCGATTGTCATCATCCCAGGT 59.858 52.381 0.00 0.00 0.00 4.00
409 422 2.579873 GATTGTCATCATCCCAGGTGG 58.420 52.381 0.00 0.00 0.00 4.61
410 423 0.034186 TTGTCATCATCCCAGGTGGC 60.034 55.000 0.00 0.00 0.00 5.01
411 424 1.524621 GTCATCATCCCAGGTGGCG 60.525 63.158 0.00 0.00 0.00 5.69
412 425 2.903855 CATCATCCCAGGTGGCGC 60.904 66.667 0.00 0.00 0.00 6.53
413 426 3.410628 ATCATCCCAGGTGGCGCA 61.411 61.111 10.83 0.00 0.00 6.09
414 427 2.982643 ATCATCCCAGGTGGCGCAA 61.983 57.895 10.83 0.00 0.00 4.85
415 428 2.898920 ATCATCCCAGGTGGCGCAAG 62.899 60.000 10.83 0.00 43.44 4.01
416 429 3.650950 ATCCCAGGTGGCGCAAGT 61.651 61.111 10.83 0.00 41.68 3.16
417 430 2.297895 ATCCCAGGTGGCGCAAGTA 61.298 57.895 10.83 0.00 41.68 2.24
418 431 1.635817 ATCCCAGGTGGCGCAAGTAT 61.636 55.000 10.83 0.00 41.68 2.12
419 432 1.378514 CCCAGGTGGCGCAAGTATT 60.379 57.895 10.83 0.00 41.68 1.89
420 433 0.107410 CCCAGGTGGCGCAAGTATTA 60.107 55.000 10.83 0.00 41.68 0.98
421 434 1.299541 CCAGGTGGCGCAAGTATTAG 58.700 55.000 10.83 0.00 41.68 1.73
422 435 1.134521 CCAGGTGGCGCAAGTATTAGA 60.135 52.381 10.83 0.00 41.68 2.10
423 436 2.205074 CAGGTGGCGCAAGTATTAGAG 58.795 52.381 10.83 0.00 41.68 2.43
424 437 2.108168 AGGTGGCGCAAGTATTAGAGA 58.892 47.619 10.83 0.00 41.68 3.10
425 438 2.101582 AGGTGGCGCAAGTATTAGAGAG 59.898 50.000 10.83 0.00 41.68 3.20
426 439 1.861575 GTGGCGCAAGTATTAGAGAGC 59.138 52.381 10.83 0.00 41.68 4.09
427 440 1.480545 TGGCGCAAGTATTAGAGAGCA 59.519 47.619 10.83 0.00 41.68 4.26
428 441 2.131183 GGCGCAAGTATTAGAGAGCAG 58.869 52.381 10.83 0.00 41.68 4.24
429 442 2.482142 GGCGCAAGTATTAGAGAGCAGT 60.482 50.000 10.83 0.00 41.68 4.40
430 443 3.190874 GCGCAAGTATTAGAGAGCAGTT 58.809 45.455 0.30 0.00 41.68 3.16
431 444 3.619038 GCGCAAGTATTAGAGAGCAGTTT 59.381 43.478 0.30 0.00 41.68 2.66
432 445 4.093556 GCGCAAGTATTAGAGAGCAGTTTT 59.906 41.667 0.30 0.00 41.68 2.43
433 446 5.291128 GCGCAAGTATTAGAGAGCAGTTTTA 59.709 40.000 0.30 0.00 41.68 1.52
434 447 6.508721 GCGCAAGTATTAGAGAGCAGTTTTAG 60.509 42.308 0.30 0.00 41.68 1.85
435 448 6.508721 CGCAAGTATTAGAGAGCAGTTTTAGC 60.509 42.308 0.00 0.00 0.00 3.09
436 449 6.313905 GCAAGTATTAGAGAGCAGTTTTAGCA 59.686 38.462 0.00 0.00 0.00 3.49
437 450 7.011857 GCAAGTATTAGAGAGCAGTTTTAGCAT 59.988 37.037 0.00 0.00 0.00 3.79
438 451 8.333908 CAAGTATTAGAGAGCAGTTTTAGCATG 58.666 37.037 0.00 0.00 0.00 4.06
439 452 5.747951 ATTAGAGAGCAGTTTTAGCATGC 57.252 39.130 10.51 10.51 40.29 4.06
444 457 0.099436 GCAGTTTTAGCATGCTCCCG 59.901 55.000 26.57 9.17 37.00 5.14
445 458 0.099436 CAGTTTTAGCATGCTCCCGC 59.901 55.000 26.57 13.41 0.00 6.13
446 459 0.035056 AGTTTTAGCATGCTCCCGCT 60.035 50.000 26.57 15.51 42.34 5.52
447 460 0.811281 GTTTTAGCATGCTCCCGCTT 59.189 50.000 26.57 0.00 39.70 4.68
448 461 2.014128 GTTTTAGCATGCTCCCGCTTA 58.986 47.619 26.57 0.65 39.70 3.09
449 462 1.663695 TTTAGCATGCTCCCGCTTAC 58.336 50.000 26.57 0.00 39.70 2.34
450 463 0.179056 TTAGCATGCTCCCGCTTACC 60.179 55.000 26.57 0.00 39.70 2.85
451 464 2.040009 TAGCATGCTCCCGCTTACCC 62.040 60.000 26.57 0.00 39.70 3.69
452 465 2.203209 CATGCTCCCGCTTACCCC 60.203 66.667 0.00 0.00 36.97 4.95
453 466 3.489513 ATGCTCCCGCTTACCCCC 61.490 66.667 0.00 0.00 36.97 5.40
454 467 4.733725 TGCTCCCGCTTACCCCCT 62.734 66.667 0.00 0.00 36.97 4.79
455 468 3.408853 GCTCCCGCTTACCCCCTT 61.409 66.667 0.00 0.00 0.00 3.95
456 469 2.980177 GCTCCCGCTTACCCCCTTT 61.980 63.158 0.00 0.00 0.00 3.11
457 470 1.689412 CTCCCGCTTACCCCCTTTT 59.311 57.895 0.00 0.00 0.00 2.27
458 471 0.039180 CTCCCGCTTACCCCCTTTTT 59.961 55.000 0.00 0.00 0.00 1.94
459 472 0.038599 TCCCGCTTACCCCCTTTTTC 59.961 55.000 0.00 0.00 0.00 2.29
460 473 0.968901 CCCGCTTACCCCCTTTTTCC 60.969 60.000 0.00 0.00 0.00 3.13
461 474 0.251430 CCGCTTACCCCCTTTTTCCA 60.251 55.000 0.00 0.00 0.00 3.53
462 475 0.885879 CGCTTACCCCCTTTTTCCAC 59.114 55.000 0.00 0.00 0.00 4.02
463 476 1.820090 CGCTTACCCCCTTTTTCCACA 60.820 52.381 0.00 0.00 0.00 4.17
464 477 2.536066 GCTTACCCCCTTTTTCCACAT 58.464 47.619 0.00 0.00 0.00 3.21
465 478 2.233676 GCTTACCCCCTTTTTCCACATG 59.766 50.000 0.00 0.00 0.00 3.21
466 479 3.773560 CTTACCCCCTTTTTCCACATGA 58.226 45.455 0.00 0.00 0.00 3.07
467 480 2.009681 ACCCCCTTTTTCCACATGAC 57.990 50.000 0.00 0.00 0.00 3.06
468 481 1.219213 ACCCCCTTTTTCCACATGACA 59.781 47.619 0.00 0.00 0.00 3.58
469 482 1.895131 CCCCCTTTTTCCACATGACAG 59.105 52.381 0.00 0.00 0.00 3.51
470 483 2.490718 CCCCCTTTTTCCACATGACAGA 60.491 50.000 0.00 0.00 0.00 3.41
471 484 3.434309 CCCCTTTTTCCACATGACAGAT 58.566 45.455 0.00 0.00 0.00 2.90
472 485 4.569653 CCCCCTTTTTCCACATGACAGATA 60.570 45.833 0.00 0.00 0.00 1.98
473 486 5.016173 CCCCTTTTTCCACATGACAGATAA 58.984 41.667 0.00 0.00 0.00 1.75
474 487 5.126061 CCCCTTTTTCCACATGACAGATAAG 59.874 44.000 0.00 0.00 0.00 1.73
475 488 5.945784 CCCTTTTTCCACATGACAGATAAGA 59.054 40.000 0.00 0.00 0.00 2.10
476 489 6.094603 CCCTTTTTCCACATGACAGATAAGAG 59.905 42.308 0.00 0.00 0.00 2.85
477 490 6.656693 CCTTTTTCCACATGACAGATAAGAGT 59.343 38.462 0.00 0.00 0.00 3.24
478 491 7.824289 CCTTTTTCCACATGACAGATAAGAGTA 59.176 37.037 0.00 0.00 0.00 2.59
479 492 9.388506 CTTTTTCCACATGACAGATAAGAGTAT 57.611 33.333 0.00 0.00 0.00 2.12
480 493 8.722480 TTTTCCACATGACAGATAAGAGTATG 57.278 34.615 0.00 0.00 0.00 2.39
481 494 7.423844 TTCCACATGACAGATAAGAGTATGT 57.576 36.000 0.00 0.00 0.00 2.29
482 495 8.533569 TTCCACATGACAGATAAGAGTATGTA 57.466 34.615 0.00 0.00 0.00 2.29
483 496 8.171164 TCCACATGACAGATAAGAGTATGTAG 57.829 38.462 0.00 0.00 0.00 2.74
484 497 7.780271 TCCACATGACAGATAAGAGTATGTAGT 59.220 37.037 0.00 0.00 0.00 2.73
485 498 9.067986 CCACATGACAGATAAGAGTATGTAGTA 57.932 37.037 0.00 0.00 0.00 1.82
494 507 9.667107 AGATAAGAGTATGTAGTAGATCTGAGC 57.333 37.037 5.18 0.00 0.00 4.26
495 508 8.801882 ATAAGAGTATGTAGTAGATCTGAGCC 57.198 38.462 5.18 0.00 0.00 4.70
496 509 5.242434 AGAGTATGTAGTAGATCTGAGCCG 58.758 45.833 5.18 0.00 0.00 5.52
497 510 4.975631 AGTATGTAGTAGATCTGAGCCGT 58.024 43.478 5.18 0.00 0.00 5.68
498 511 5.378332 AGTATGTAGTAGATCTGAGCCGTT 58.622 41.667 5.18 0.00 0.00 4.44
499 512 4.576216 ATGTAGTAGATCTGAGCCGTTG 57.424 45.455 5.18 0.00 0.00 4.10
500 513 3.617284 TGTAGTAGATCTGAGCCGTTGA 58.383 45.455 5.18 0.00 0.00 3.18
501 514 4.207955 TGTAGTAGATCTGAGCCGTTGAT 58.792 43.478 5.18 0.00 0.00 2.57
502 515 4.276183 TGTAGTAGATCTGAGCCGTTGATC 59.724 45.833 5.18 0.00 37.46 2.92
503 516 3.291584 AGTAGATCTGAGCCGTTGATCA 58.708 45.455 5.18 0.00 39.07 2.92
504 517 2.593346 AGATCTGAGCCGTTGATCAC 57.407 50.000 0.00 0.00 39.07 3.06
505 518 1.827344 AGATCTGAGCCGTTGATCACA 59.173 47.619 0.00 0.00 39.07 3.58
506 519 2.433604 AGATCTGAGCCGTTGATCACAT 59.566 45.455 0.00 0.00 39.07 3.21
507 520 2.768253 TCTGAGCCGTTGATCACATT 57.232 45.000 0.00 0.00 32.50 2.71
508 521 3.885724 TCTGAGCCGTTGATCACATTA 57.114 42.857 0.00 0.00 32.50 1.90
509 522 4.200838 TCTGAGCCGTTGATCACATTAA 57.799 40.909 0.00 0.00 32.50 1.40
510 523 4.183865 TCTGAGCCGTTGATCACATTAAG 58.816 43.478 0.00 0.00 32.50 1.85
511 524 3.935203 CTGAGCCGTTGATCACATTAAGT 59.065 43.478 0.00 0.00 32.50 2.24
512 525 5.079689 TGAGCCGTTGATCACATTAAGTA 57.920 39.130 0.00 0.00 30.48 2.24
513 526 5.109210 TGAGCCGTTGATCACATTAAGTAG 58.891 41.667 0.00 0.00 30.48 2.57
514 527 5.086104 AGCCGTTGATCACATTAAGTAGT 57.914 39.130 0.00 0.00 0.00 2.73
515 528 4.870426 AGCCGTTGATCACATTAAGTAGTG 59.130 41.667 0.00 0.00 37.10 2.74
516 529 4.034048 GCCGTTGATCACATTAAGTAGTGG 59.966 45.833 0.00 0.00 36.43 4.00
517 530 5.175859 CCGTTGATCACATTAAGTAGTGGT 58.824 41.667 0.00 0.00 36.43 4.16
518 531 5.642063 CCGTTGATCACATTAAGTAGTGGTT 59.358 40.000 0.00 0.00 36.43 3.67
519 532 6.814644 CCGTTGATCACATTAAGTAGTGGTTA 59.185 38.462 0.00 0.00 36.43 2.85
520 533 7.010183 CCGTTGATCACATTAAGTAGTGGTTAG 59.990 40.741 0.00 0.00 36.43 2.34
521 534 7.758076 CGTTGATCACATTAAGTAGTGGTTAGA 59.242 37.037 0.00 0.00 36.43 2.10
522 535 9.601217 GTTGATCACATTAAGTAGTGGTTAGAT 57.399 33.333 0.00 0.00 36.43 1.98
541 554 9.814899 GGTTAGATTAACTCTTACCTTCTTACC 57.185 37.037 12.18 3.84 45.99 2.85
544 557 8.896722 AGATTAACTCTTACCTTCTTACCTCA 57.103 34.615 0.00 0.00 0.00 3.86
545 558 9.495382 AGATTAACTCTTACCTTCTTACCTCAT 57.505 33.333 0.00 0.00 0.00 2.90
549 562 8.611051 AACTCTTACCTTCTTACCTCATATGT 57.389 34.615 1.90 0.00 0.00 2.29
550 563 9.710818 AACTCTTACCTTCTTACCTCATATGTA 57.289 33.333 1.90 0.00 0.00 2.29
551 564 9.710818 ACTCTTACCTTCTTACCTCATATGTAA 57.289 33.333 1.90 0.00 0.00 2.41
556 569 8.388656 ACCTTCTTACCTCATATGTAAAAGGA 57.611 34.615 13.65 3.81 37.89 3.36
557 570 8.487028 ACCTTCTTACCTCATATGTAAAAGGAG 58.513 37.037 13.65 11.19 37.89 3.69
561 574 4.373156 CCTCATATGTAAAAGGAGGGGG 57.627 50.000 1.90 0.00 41.12 5.40
562 575 3.722101 CCTCATATGTAAAAGGAGGGGGT 59.278 47.826 1.90 0.00 41.12 4.95
563 576 4.911522 CCTCATATGTAAAAGGAGGGGGTA 59.088 45.833 1.90 0.00 41.12 3.69
564 577 5.371472 CCTCATATGTAAAAGGAGGGGGTAA 59.629 44.000 1.90 0.00 41.12 2.85
565 578 6.465894 CCTCATATGTAAAAGGAGGGGGTAAG 60.466 46.154 1.90 0.00 41.12 2.34
566 579 6.214278 TCATATGTAAAAGGAGGGGGTAAGA 58.786 40.000 1.90 0.00 0.00 2.10
567 580 6.329197 TCATATGTAAAAGGAGGGGGTAAGAG 59.671 42.308 1.90 0.00 0.00 2.85
568 581 3.187112 TGTAAAAGGAGGGGGTAAGAGG 58.813 50.000 0.00 0.00 0.00 3.69
569 582 1.682478 AAAAGGAGGGGGTAAGAGGG 58.318 55.000 0.00 0.00 0.00 4.30
570 583 0.804255 AAAGGAGGGGGTAAGAGGGA 59.196 55.000 0.00 0.00 0.00 4.20
571 584 0.343726 AAGGAGGGGGTAAGAGGGAG 59.656 60.000 0.00 0.00 0.00 4.30
572 585 1.766864 GGAGGGGGTAAGAGGGAGC 60.767 68.421 0.00 0.00 0.00 4.70
573 586 1.003051 GAGGGGGTAAGAGGGAGCA 59.997 63.158 0.00 0.00 0.00 4.26
574 587 0.400670 GAGGGGGTAAGAGGGAGCAT 60.401 60.000 0.00 0.00 0.00 3.79
575 588 0.695803 AGGGGGTAAGAGGGAGCATG 60.696 60.000 0.00 0.00 0.00 4.06
576 589 0.988678 GGGGGTAAGAGGGAGCATGT 60.989 60.000 0.00 0.00 0.00 3.21
577 590 0.919710 GGGGTAAGAGGGAGCATGTT 59.080 55.000 0.00 0.00 0.00 2.71
578 591 2.124411 GGGGTAAGAGGGAGCATGTTA 58.876 52.381 0.00 0.00 0.00 2.41
579 592 2.508300 GGGGTAAGAGGGAGCATGTTAA 59.492 50.000 0.00 0.00 0.00 2.01
580 593 3.053917 GGGGTAAGAGGGAGCATGTTAAA 60.054 47.826 0.00 0.00 0.00 1.52
581 594 4.569015 GGGGTAAGAGGGAGCATGTTAAAA 60.569 45.833 0.00 0.00 0.00 1.52
582 595 5.201243 GGGTAAGAGGGAGCATGTTAAAAT 58.799 41.667 0.00 0.00 0.00 1.82
583 596 5.656859 GGGTAAGAGGGAGCATGTTAAAATT 59.343 40.000 0.00 0.00 0.00 1.82
584 597 6.154534 GGGTAAGAGGGAGCATGTTAAAATTT 59.845 38.462 0.00 0.00 0.00 1.82
585 598 7.035612 GGTAAGAGGGAGCATGTTAAAATTTG 58.964 38.462 0.00 0.00 0.00 2.32
586 599 5.077134 AGAGGGAGCATGTTAAAATTTGC 57.923 39.130 0.00 0.00 35.34 3.68
587 600 4.081476 AGAGGGAGCATGTTAAAATTTGCC 60.081 41.667 0.00 0.00 35.71 4.52
588 601 3.582208 AGGGAGCATGTTAAAATTTGCCA 59.418 39.130 0.00 0.00 35.71 4.92
612 625 9.646427 CCATTATTAGAGACTATTAAGAGCCAC 57.354 37.037 0.00 0.00 0.00 5.01
631 645 2.285442 AAAGGGCGGCCTCCTAGT 60.285 61.111 32.90 12.87 33.58 2.57
632 646 2.670148 AAAGGGCGGCCTCCTAGTG 61.670 63.158 32.90 0.00 33.58 2.74
637 651 2.352032 GCGGCCTCCTAGTGTGTCT 61.352 63.158 0.00 0.00 0.00 3.41
644 658 2.419324 CCTCCTAGTGTGTCTACGTGTC 59.581 54.545 0.00 0.00 0.00 3.67
645 659 2.071540 TCCTAGTGTGTCTACGTGTCG 58.928 52.381 0.00 0.00 0.00 4.35
646 660 1.802960 CCTAGTGTGTCTACGTGTCGT 59.197 52.381 0.00 0.00 44.35 4.34
647 661 2.412455 CCTAGTGTGTCTACGTGTCGTG 60.412 54.545 0.00 0.00 41.39 4.35
648 662 1.019673 AGTGTGTCTACGTGTCGTGT 58.980 50.000 0.00 0.00 41.39 4.49
649 663 1.118033 GTGTGTCTACGTGTCGTGTG 58.882 55.000 0.00 0.00 41.39 3.82
650 664 0.593008 TGTGTCTACGTGTCGTGTGC 60.593 55.000 0.00 0.00 41.39 4.57
651 665 1.008194 TGTCTACGTGTCGTGTGCC 60.008 57.895 0.00 0.00 41.39 5.01
652 666 1.008194 GTCTACGTGTCGTGTGCCA 60.008 57.895 0.00 0.00 41.39 4.92
653 667 0.595567 GTCTACGTGTCGTGTGCCAA 60.596 55.000 0.00 0.00 41.39 4.52
654 668 0.315886 TCTACGTGTCGTGTGCCAAT 59.684 50.000 0.00 0.00 41.39 3.16
655 669 1.540707 TCTACGTGTCGTGTGCCAATA 59.459 47.619 0.00 0.00 41.39 1.90
683 697 6.978659 CGATAGGTTGAGCTTGATTACACTTA 59.021 38.462 0.00 0.00 0.00 2.24
685 699 9.331282 GATAGGTTGAGCTTGATTACACTTAAT 57.669 33.333 0.00 0.00 0.00 1.40
686 700 7.383102 AGGTTGAGCTTGATTACACTTAATG 57.617 36.000 0.00 0.00 0.00 1.90
688 702 7.831193 AGGTTGAGCTTGATTACACTTAATGAT 59.169 33.333 0.00 0.00 0.00 2.45
691 705 9.844790 TTGAGCTTGATTACACTTAATGATTTG 57.155 29.630 0.00 0.00 0.00 2.32
692 706 7.970061 TGAGCTTGATTACACTTAATGATTTGC 59.030 33.333 0.00 0.00 0.00 3.68
695 709 7.473735 TTGATTACACTTAATGATTTGCCCA 57.526 32.000 0.00 0.00 0.00 5.36
696 710 7.658525 TGATTACACTTAATGATTTGCCCAT 57.341 32.000 0.00 0.00 0.00 4.00
697 711 7.490840 TGATTACACTTAATGATTTGCCCATG 58.509 34.615 0.00 0.00 0.00 3.66
705 720 2.068277 GATTTGCCCATGCGCCTCTC 62.068 60.000 4.18 0.00 41.78 3.20
709 724 2.202987 CCCATGCGCCTCTCTGAC 60.203 66.667 4.18 0.00 0.00 3.51
738 753 3.006110 TGTGTTGGTCTCGGGTAAGTTAG 59.994 47.826 0.00 0.00 0.00 2.34
752 767 5.447573 GGTAAGTTAGACTAGAATACCGCG 58.552 45.833 0.00 0.00 0.00 6.46
766 781 2.384309 CCGCGATGCCACACGTTAA 61.384 57.895 8.23 0.00 0.00 2.01
792 807 0.321671 AGACCACACCAGACAATCCG 59.678 55.000 0.00 0.00 0.00 4.18
825 840 3.071479 AGCAATTTTCATTGGCAGCTTG 58.929 40.909 0.00 0.00 40.36 4.01
860 875 3.282157 CATCAAGATGCCCCCGCG 61.282 66.667 0.00 0.00 38.08 6.46
913 928 0.039074 CGAGTGGACAGAAACGAGCT 60.039 55.000 0.00 0.00 0.00 4.09
1107 1130 3.586039 CGATGATGTTGTCAACGGC 57.414 52.632 11.03 6.03 45.86 5.68
1308 1335 2.161486 GGACGCAGCGCAACTAGAG 61.161 63.158 16.61 0.00 0.00 2.43
1422 1449 0.530744 CGTTCATCTTCGTGAGGGGA 59.469 55.000 0.00 0.00 0.00 4.81
1458 1485 1.065636 ACGTCCATCTCCTACGAGTCA 60.066 52.381 0.00 0.00 39.80 3.41
1562 1589 3.119101 CGCTCCTAGTTGCTTTCCTCTTA 60.119 47.826 3.32 0.00 0.00 2.10
1631 1659 5.957796 CCGAAGAACTTATTTTCATACGTGC 59.042 40.000 0.00 0.00 0.00 5.34
1727 1755 1.372501 AGGTGGCCTTCTACCATTGT 58.627 50.000 12.26 0.00 39.95 2.71
1859 1887 1.448540 CCAGTGCGCGGAGATCTTT 60.449 57.895 8.83 0.00 0.00 2.52
2043 2071 1.546961 CGACACCTACCTCTCCAAGT 58.453 55.000 0.00 0.00 0.00 3.16
2044 2072 1.202582 CGACACCTACCTCTCCAAGTG 59.797 57.143 0.00 0.00 0.00 3.16
2100 2128 2.380410 GGCAGCACCGAGTACGTTG 61.380 63.158 0.00 0.00 37.88 4.10
2103 2131 2.732094 GCACCGAGTACGTTGCGT 60.732 61.111 0.00 0.00 46.30 5.24
2126 2154 4.109050 ACGCACAAACAAATTCGAACAAT 58.891 34.783 0.00 0.00 0.00 2.71
2133 2161 7.788846 CACAAACAAATTCGAACAATGATCAAC 59.211 33.333 0.00 0.00 0.00 3.18
2138 2166 6.764308 AATTCGAACAATGATCAACCATCT 57.236 33.333 0.00 0.00 31.92 2.90
2288 2316 2.575262 GGTCGCGACGGTTAGACG 60.575 66.667 30.99 0.00 40.76 4.18
2294 2322 2.578981 GACGGTTAGACGAGGCGC 60.579 66.667 0.00 0.00 37.61 6.53
2338 2366 1.464997 GACTTCATCAACGGCAAGGAC 59.535 52.381 0.00 0.00 0.00 3.85
2365 2393 3.570125 TCCCAGCATTCTACTACTGATCG 59.430 47.826 0.00 0.00 31.67 3.69
2368 2396 4.215201 CAGCATTCTACTACTGATCGTCG 58.785 47.826 0.00 0.00 31.67 5.12
2380 2408 3.254060 CTGATCGTCGGACTCAAACAAT 58.746 45.455 6.57 0.00 0.00 2.71
2411 2443 0.523519 GTTGCTTGCTTGCTACTCCC 59.476 55.000 8.25 0.00 36.17 4.30
2417 2449 0.036010 TGCTTGCTACTCCCTCTTGC 60.036 55.000 0.00 0.00 0.00 4.01
2420 2452 2.943199 GCTTGCTACTCCCTCTTGCAAT 60.943 50.000 0.00 0.00 41.76 3.56
2421 2453 2.408271 TGCTACTCCCTCTTGCAATG 57.592 50.000 0.00 0.00 0.00 2.82
2486 2520 9.368674 CATGATGGATCTCTGTAGATGTAATTC 57.631 37.037 0.00 0.00 42.73 2.17
2610 2651 4.394920 TCGCTTAGTTGGGAATTTGTCATC 59.605 41.667 0.00 0.00 0.00 2.92
2890 3220 5.790593 TGGCTAATCGACTTTAGTGAGTTT 58.209 37.500 7.45 0.00 32.77 2.66
3358 3704 1.277557 GTCACCTTGCTCTCATGACCT 59.722 52.381 0.00 0.00 34.83 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.254115 AGGTAAGAGGGAGCATGTTAAAAC 58.746 41.667 0.00 0.00 0.00 2.43
1 2 5.497474 GAGGTAAGAGGGAGCATGTTAAAA 58.503 41.667 0.00 0.00 0.00 1.52
2 3 4.080526 GGAGGTAAGAGGGAGCATGTTAAA 60.081 45.833 0.00 0.00 0.00 1.52
3 4 3.454812 GGAGGTAAGAGGGAGCATGTTAA 59.545 47.826 0.00 0.00 0.00 2.01
4 5 3.039011 GGAGGTAAGAGGGAGCATGTTA 58.961 50.000 0.00 0.00 0.00 2.41
5 6 1.840635 GGAGGTAAGAGGGAGCATGTT 59.159 52.381 0.00 0.00 0.00 2.71
7 8 1.691434 GAGGAGGTAAGAGGGAGCATG 59.309 57.143 0.00 0.00 0.00 4.06
8 9 1.578215 AGAGGAGGTAAGAGGGAGCAT 59.422 52.381 0.00 0.00 0.00 3.79
9 10 1.011595 AGAGGAGGTAAGAGGGAGCA 58.988 55.000 0.00 0.00 0.00 4.26
10 11 2.168458 AAGAGGAGGTAAGAGGGAGC 57.832 55.000 0.00 0.00 0.00 4.70
11 12 5.484290 TGTAAAAAGAGGAGGTAAGAGGGAG 59.516 44.000 0.00 0.00 0.00 4.30
12 13 5.408824 TGTAAAAAGAGGAGGTAAGAGGGA 58.591 41.667 0.00 0.00 0.00 4.20
13 14 5.757099 TGTAAAAAGAGGAGGTAAGAGGG 57.243 43.478 0.00 0.00 0.00 4.30
14 15 6.947464 TCATGTAAAAAGAGGAGGTAAGAGG 58.053 40.000 0.00 0.00 0.00 3.69
15 16 7.841956 TCTCATGTAAAAAGAGGAGGTAAGAG 58.158 38.462 0.00 0.00 0.00 2.85
16 17 7.792364 TCTCATGTAAAAAGAGGAGGTAAGA 57.208 36.000 0.00 0.00 0.00 2.10
45 46 9.862371 CAACGGCTCAGATTTATTATATACTCT 57.138 33.333 0.00 0.00 0.00 3.24
46 47 9.856488 TCAACGGCTCAGATTTATTATATACTC 57.144 33.333 0.00 0.00 0.00 2.59
50 51 9.593134 GAGATCAACGGCTCAGATTTATTATAT 57.407 33.333 0.00 0.00 0.00 0.86
51 52 8.585018 TGAGATCAACGGCTCAGATTTATTATA 58.415 33.333 0.00 0.00 36.31 0.98
52 53 7.445121 TGAGATCAACGGCTCAGATTTATTAT 58.555 34.615 0.00 0.00 36.31 1.28
53 54 6.816136 TGAGATCAACGGCTCAGATTTATTA 58.184 36.000 0.00 0.00 36.31 0.98
54 55 5.674525 TGAGATCAACGGCTCAGATTTATT 58.325 37.500 0.00 0.00 36.31 1.40
55 56 5.282055 TGAGATCAACGGCTCAGATTTAT 57.718 39.130 0.00 0.00 36.31 1.40
56 57 4.736126 TGAGATCAACGGCTCAGATTTA 57.264 40.909 0.00 0.00 36.31 1.40
57 58 3.616956 TGAGATCAACGGCTCAGATTT 57.383 42.857 0.00 0.00 36.31 2.17
58 59 3.834489 ATGAGATCAACGGCTCAGATT 57.166 42.857 0.00 0.00 43.65 2.40
59 60 3.834489 AATGAGATCAACGGCTCAGAT 57.166 42.857 0.00 0.00 43.65 2.90
60 61 4.736126 TTAATGAGATCAACGGCTCAGA 57.264 40.909 0.00 0.00 43.65 3.27
61 62 5.998454 AATTAATGAGATCAACGGCTCAG 57.002 39.130 0.00 0.00 43.65 3.35
62 63 6.479990 CACTAATTAATGAGATCAACGGCTCA 59.520 38.462 6.84 0.00 44.43 4.26
63 64 6.073548 CCACTAATTAATGAGATCAACGGCTC 60.074 42.308 6.84 0.00 0.00 4.70
64 65 5.760253 CCACTAATTAATGAGATCAACGGCT 59.240 40.000 6.84 0.00 0.00 5.52
65 66 5.527582 ACCACTAATTAATGAGATCAACGGC 59.472 40.000 6.84 0.00 0.00 5.68
66 67 6.761242 TGACCACTAATTAATGAGATCAACGG 59.239 38.462 6.84 0.54 0.00 4.44
67 68 7.706607 TCTGACCACTAATTAATGAGATCAACG 59.293 37.037 6.84 0.00 0.00 4.10
68 69 8.948631 TCTGACCACTAATTAATGAGATCAAC 57.051 34.615 6.84 0.00 0.00 3.18
79 80 9.120538 GGCAAATCTTAATCTGACCACTAATTA 57.879 33.333 0.00 0.00 0.00 1.40
80 81 7.201732 CGGCAAATCTTAATCTGACCACTAATT 60.202 37.037 0.00 0.00 0.00 1.40
81 82 6.260936 CGGCAAATCTTAATCTGACCACTAAT 59.739 38.462 0.00 0.00 0.00 1.73
82 83 5.584649 CGGCAAATCTTAATCTGACCACTAA 59.415 40.000 0.00 0.00 0.00 2.24
83 84 5.116180 CGGCAAATCTTAATCTGACCACTA 58.884 41.667 0.00 0.00 0.00 2.74
84 85 3.941483 CGGCAAATCTTAATCTGACCACT 59.059 43.478 0.00 0.00 0.00 4.00
85 86 3.487544 GCGGCAAATCTTAATCTGACCAC 60.488 47.826 0.00 0.00 0.00 4.16
86 87 2.682856 GCGGCAAATCTTAATCTGACCA 59.317 45.455 0.00 0.00 0.00 4.02
87 88 2.033424 GGCGGCAAATCTTAATCTGACC 59.967 50.000 3.07 0.00 0.00 4.02
88 89 2.033424 GGGCGGCAAATCTTAATCTGAC 59.967 50.000 12.47 0.00 0.00 3.51
89 90 2.092429 AGGGCGGCAAATCTTAATCTGA 60.092 45.455 12.47 0.00 0.00 3.27
90 91 2.301346 AGGGCGGCAAATCTTAATCTG 58.699 47.619 12.47 0.00 0.00 2.90
91 92 2.736670 AGGGCGGCAAATCTTAATCT 57.263 45.000 12.47 0.00 0.00 2.40
92 93 4.911514 TTAAGGGCGGCAAATCTTAATC 57.088 40.909 12.47 0.00 29.87 1.75
93 94 5.669164 TTTTAAGGGCGGCAAATCTTAAT 57.331 34.783 12.47 0.00 33.47 1.40
94 95 5.669164 ATTTTAAGGGCGGCAAATCTTAA 57.331 34.783 12.47 12.23 32.09 1.85
95 96 5.889289 ACTATTTTAAGGGCGGCAAATCTTA 59.111 36.000 12.47 6.31 0.00 2.10
96 97 4.709886 ACTATTTTAAGGGCGGCAAATCTT 59.290 37.500 12.47 7.39 0.00 2.40
97 98 4.278310 ACTATTTTAAGGGCGGCAAATCT 58.722 39.130 12.47 0.00 0.00 2.40
98 99 4.649088 ACTATTTTAAGGGCGGCAAATC 57.351 40.909 12.47 0.00 0.00 2.17
99 100 4.464597 TGAACTATTTTAAGGGCGGCAAAT 59.535 37.500 12.47 10.61 0.00 2.32
100 101 3.827302 TGAACTATTTTAAGGGCGGCAAA 59.173 39.130 12.47 2.58 0.00 3.68
101 102 3.422796 TGAACTATTTTAAGGGCGGCAA 58.577 40.909 12.47 0.00 0.00 4.52
102 103 3.074675 TGAACTATTTTAAGGGCGGCA 57.925 42.857 12.47 0.00 0.00 5.69
103 104 3.181490 CCTTGAACTATTTTAAGGGCGGC 60.181 47.826 0.00 0.00 42.35 6.53
104 105 4.095932 GTCCTTGAACTATTTTAAGGGCGG 59.904 45.833 14.10 0.00 44.90 6.13
105 106 5.231265 GTCCTTGAACTATTTTAAGGGCG 57.769 43.478 14.10 0.00 44.90 6.13
107 108 5.125578 GCAGGTCCTTGAACTATTTTAAGGG 59.874 44.000 14.10 2.61 44.90 3.95
108 109 5.946377 AGCAGGTCCTTGAACTATTTTAAGG 59.054 40.000 9.40 9.40 45.76 2.69
109 110 6.431234 ACAGCAGGTCCTTGAACTATTTTAAG 59.569 38.462 0.00 0.00 0.00 1.85
110 111 6.206634 CACAGCAGGTCCTTGAACTATTTTAA 59.793 38.462 0.00 0.00 0.00 1.52
111 112 5.705441 CACAGCAGGTCCTTGAACTATTTTA 59.295 40.000 0.00 0.00 0.00 1.52
112 113 4.520492 CACAGCAGGTCCTTGAACTATTTT 59.480 41.667 0.00 0.00 0.00 1.82
113 114 4.074970 CACAGCAGGTCCTTGAACTATTT 58.925 43.478 0.00 0.00 0.00 1.40
114 115 3.679389 CACAGCAGGTCCTTGAACTATT 58.321 45.455 0.00 0.00 0.00 1.73
115 116 2.616510 GCACAGCAGGTCCTTGAACTAT 60.617 50.000 0.00 0.00 0.00 2.12
116 117 1.270839 GCACAGCAGGTCCTTGAACTA 60.271 52.381 0.00 0.00 0.00 2.24
117 118 0.536006 GCACAGCAGGTCCTTGAACT 60.536 55.000 0.00 0.00 0.00 3.01
118 119 0.819259 TGCACAGCAGGTCCTTGAAC 60.819 55.000 0.00 0.00 33.32 3.18
119 120 0.819259 GTGCACAGCAGGTCCTTGAA 60.819 55.000 13.17 0.00 40.08 2.69
120 121 1.227943 GTGCACAGCAGGTCCTTGA 60.228 57.895 13.17 0.00 40.08 3.02
121 122 0.820891 AAGTGCACAGCAGGTCCTTG 60.821 55.000 21.04 0.00 40.08 3.61
122 123 0.536006 GAAGTGCACAGCAGGTCCTT 60.536 55.000 21.04 0.05 40.08 3.36
123 124 1.072159 GAAGTGCACAGCAGGTCCT 59.928 57.895 21.04 0.00 40.08 3.85
124 125 0.819259 TTGAAGTGCACAGCAGGTCC 60.819 55.000 21.04 0.00 40.08 4.46
125 126 1.198637 GATTGAAGTGCACAGCAGGTC 59.801 52.381 21.04 13.40 40.08 3.85
126 127 1.202855 AGATTGAAGTGCACAGCAGGT 60.203 47.619 21.04 8.82 40.08 4.00
127 128 1.531423 AGATTGAAGTGCACAGCAGG 58.469 50.000 21.04 0.00 40.08 4.85
128 129 4.634883 AGATTAGATTGAAGTGCACAGCAG 59.365 41.667 21.04 0.00 40.08 4.24
129 130 4.582869 AGATTAGATTGAAGTGCACAGCA 58.417 39.130 21.04 13.56 35.60 4.41
130 131 5.353678 AGAAGATTAGATTGAAGTGCACAGC 59.646 40.000 21.04 10.85 0.00 4.40
131 132 6.237781 CGAGAAGATTAGATTGAAGTGCACAG 60.238 42.308 21.04 0.00 0.00 3.66
132 133 5.578336 CGAGAAGATTAGATTGAAGTGCACA 59.422 40.000 21.04 0.00 0.00 4.57
133 134 5.807520 TCGAGAAGATTAGATTGAAGTGCAC 59.192 40.000 9.40 9.40 0.00 4.57
134 135 5.965922 TCGAGAAGATTAGATTGAAGTGCA 58.034 37.500 0.00 0.00 0.00 4.57
135 136 6.893958 TTCGAGAAGATTAGATTGAAGTGC 57.106 37.500 0.00 0.00 0.00 4.40
164 165 8.459635 GGTGGTAAATTGCAAACCTTTTTAAAA 58.540 29.630 17.49 0.00 34.23 1.52
167 168 5.753921 CGGTGGTAAATTGCAAACCTTTTTA 59.246 36.000 17.49 8.75 34.23 1.52
169 170 4.123506 CGGTGGTAAATTGCAAACCTTTT 58.876 39.130 17.49 9.97 34.23 2.27
203 204 0.537143 GCATGACCTGTCCACACCAA 60.537 55.000 0.00 0.00 0.00 3.67
204 205 1.073025 GCATGACCTGTCCACACCA 59.927 57.895 0.00 0.00 0.00 4.17
211 212 6.712095 TCATCCAAATATTAGCATGACCTGTC 59.288 38.462 0.00 0.00 0.00 3.51
212 213 6.604171 TCATCCAAATATTAGCATGACCTGT 58.396 36.000 0.00 0.00 0.00 4.00
213 214 6.938596 TCTCATCCAAATATTAGCATGACCTG 59.061 38.462 0.00 0.00 0.00 4.00
255 256 4.461119 TCCGGATGCTGGAGAACT 57.539 55.556 0.00 0.00 33.41 3.01
296 309 2.032680 TTCCATTCCGGTCCGAATTC 57.967 50.000 14.39 0.00 35.57 2.17
297 310 2.729028 ATTCCATTCCGGTCCGAATT 57.271 45.000 14.39 0.00 35.57 2.17
298 311 2.704065 AGTATTCCATTCCGGTCCGAAT 59.296 45.455 14.39 7.93 35.57 3.34
301 314 1.540363 CCAGTATTCCATTCCGGTCCG 60.540 57.143 3.60 3.60 35.57 4.79
311 324 1.450134 CGCTGCAGCCAGTATTCCA 60.450 57.895 32.07 0.00 41.26 3.53
316 329 4.765449 CAGCCGCTGCAGCCAGTA 62.765 66.667 32.07 0.00 41.26 2.74
327 340 2.890474 CGTCCACCATACAGCCGC 60.890 66.667 0.00 0.00 0.00 6.53
328 341 2.890474 GCGTCCACCATACAGCCG 60.890 66.667 0.00 0.00 0.00 5.52
329 342 1.815421 CAGCGTCCACCATACAGCC 60.815 63.158 0.00 0.00 0.00 4.85
330 343 1.815421 CCAGCGTCCACCATACAGC 60.815 63.158 0.00 0.00 0.00 4.40
331 344 0.249120 TTCCAGCGTCCACCATACAG 59.751 55.000 0.00 0.00 0.00 2.74
332 345 0.036765 GTTCCAGCGTCCACCATACA 60.037 55.000 0.00 0.00 0.00 2.29
333 346 0.743345 GGTTCCAGCGTCCACCATAC 60.743 60.000 0.00 0.00 0.00 2.39
334 347 1.600107 GGTTCCAGCGTCCACCATA 59.400 57.895 0.00 0.00 0.00 2.74
335 348 2.351276 GGTTCCAGCGTCCACCAT 59.649 61.111 0.00 0.00 0.00 3.55
336 349 3.948719 GGGTTCCAGCGTCCACCA 61.949 66.667 0.00 0.00 0.00 4.17
338 351 3.524648 TTCGGGTTCCAGCGTCCAC 62.525 63.158 0.00 0.00 0.00 4.02
339 352 3.234630 CTTCGGGTTCCAGCGTCCA 62.235 63.158 0.00 0.00 0.00 4.02
340 353 2.434359 CTTCGGGTTCCAGCGTCC 60.434 66.667 0.00 0.00 0.00 4.79
341 354 2.434359 CCTTCGGGTTCCAGCGTC 60.434 66.667 0.00 0.00 0.00 5.19
351 364 1.318576 AAAAAGCACTCACCTTCGGG 58.681 50.000 0.00 0.00 41.87 5.14
352 365 3.139077 ACTAAAAAGCACTCACCTTCGG 58.861 45.455 0.00 0.00 0.00 4.30
353 366 3.186613 GGACTAAAAAGCACTCACCTTCG 59.813 47.826 0.00 0.00 0.00 3.79
354 367 4.134563 TGGACTAAAAAGCACTCACCTTC 58.865 43.478 0.00 0.00 0.00 3.46
355 368 4.137543 CTGGACTAAAAAGCACTCACCTT 58.862 43.478 0.00 0.00 0.00 3.50
356 369 3.496870 CCTGGACTAAAAAGCACTCACCT 60.497 47.826 0.00 0.00 0.00 4.00
357 370 2.814336 CCTGGACTAAAAAGCACTCACC 59.186 50.000 0.00 0.00 0.00 4.02
358 371 3.251004 CACCTGGACTAAAAAGCACTCAC 59.749 47.826 0.00 0.00 0.00 3.51
359 372 3.476552 CACCTGGACTAAAAAGCACTCA 58.523 45.455 0.00 0.00 0.00 3.41
360 373 2.226674 GCACCTGGACTAAAAAGCACTC 59.773 50.000 0.00 0.00 0.00 3.51
361 374 2.158608 AGCACCTGGACTAAAAAGCACT 60.159 45.455 0.00 0.00 0.00 4.40
362 375 2.030805 CAGCACCTGGACTAAAAAGCAC 60.031 50.000 0.00 0.00 0.00 4.40
363 376 2.229792 CAGCACCTGGACTAAAAAGCA 58.770 47.619 0.00 0.00 0.00 3.91
403 416 2.159099 TCTCTAATACTTGCGCCACCTG 60.159 50.000 4.18 0.00 0.00 4.00
404 417 2.101582 CTCTCTAATACTTGCGCCACCT 59.898 50.000 4.18 0.00 0.00 4.00
406 419 1.861575 GCTCTCTAATACTTGCGCCAC 59.138 52.381 4.18 0.00 0.00 5.01
407 420 1.480545 TGCTCTCTAATACTTGCGCCA 59.519 47.619 4.18 0.00 0.00 5.69
409 422 2.815478 ACTGCTCTCTAATACTTGCGC 58.185 47.619 0.00 0.00 0.00 6.09
410 423 5.786401 AAAACTGCTCTCTAATACTTGCG 57.214 39.130 0.00 0.00 0.00 4.85
411 424 6.313905 TGCTAAAACTGCTCTCTAATACTTGC 59.686 38.462 0.00 0.00 0.00 4.01
412 425 7.834068 TGCTAAAACTGCTCTCTAATACTTG 57.166 36.000 0.00 0.00 0.00 3.16
413 426 7.011857 GCATGCTAAAACTGCTCTCTAATACTT 59.988 37.037 11.37 0.00 33.15 2.24
414 427 6.481644 GCATGCTAAAACTGCTCTCTAATACT 59.518 38.462 11.37 0.00 33.15 2.12
415 428 6.481644 AGCATGCTAAAACTGCTCTCTAATAC 59.518 38.462 21.21 0.00 42.35 1.89
416 429 6.586344 AGCATGCTAAAACTGCTCTCTAATA 58.414 36.000 21.21 0.00 42.35 0.98
417 430 5.435291 AGCATGCTAAAACTGCTCTCTAAT 58.565 37.500 21.21 0.00 42.35 1.73
418 431 4.836825 AGCATGCTAAAACTGCTCTCTAA 58.163 39.130 21.21 0.00 42.35 2.10
419 432 4.478206 AGCATGCTAAAACTGCTCTCTA 57.522 40.909 21.21 0.00 42.35 2.43
420 433 3.347077 AGCATGCTAAAACTGCTCTCT 57.653 42.857 21.21 0.00 42.35 3.10
425 438 0.099436 CGGGAGCATGCTAAAACTGC 59.901 55.000 22.74 5.92 36.15 4.40
439 452 0.039180 AAAAAGGGGGTAAGCGGGAG 59.961 55.000 0.00 0.00 0.00 4.30
440 453 0.038599 GAAAAAGGGGGTAAGCGGGA 59.961 55.000 0.00 0.00 0.00 5.14
441 454 0.968901 GGAAAAAGGGGGTAAGCGGG 60.969 60.000 0.00 0.00 0.00 6.13
442 455 0.251430 TGGAAAAAGGGGGTAAGCGG 60.251 55.000 0.00 0.00 0.00 5.52
443 456 0.885879 GTGGAAAAAGGGGGTAAGCG 59.114 55.000 0.00 0.00 0.00 4.68
444 457 2.003937 TGTGGAAAAAGGGGGTAAGC 57.996 50.000 0.00 0.00 0.00 3.09
445 458 3.509967 GTCATGTGGAAAAAGGGGGTAAG 59.490 47.826 0.00 0.00 0.00 2.34
446 459 3.117093 TGTCATGTGGAAAAAGGGGGTAA 60.117 43.478 0.00 0.00 0.00 2.85
447 460 2.447429 TGTCATGTGGAAAAAGGGGGTA 59.553 45.455 0.00 0.00 0.00 3.69
448 461 1.219213 TGTCATGTGGAAAAAGGGGGT 59.781 47.619 0.00 0.00 0.00 4.95
449 462 1.895131 CTGTCATGTGGAAAAAGGGGG 59.105 52.381 0.00 0.00 0.00 5.40
450 463 2.875296 TCTGTCATGTGGAAAAAGGGG 58.125 47.619 0.00 0.00 0.00 4.79
451 464 5.945784 TCTTATCTGTCATGTGGAAAAAGGG 59.054 40.000 0.00 0.00 0.00 3.95
452 465 6.656693 ACTCTTATCTGTCATGTGGAAAAAGG 59.343 38.462 0.00 0.00 0.00 3.11
453 466 7.678947 ACTCTTATCTGTCATGTGGAAAAAG 57.321 36.000 0.00 0.09 0.00 2.27
454 467 9.166173 CATACTCTTATCTGTCATGTGGAAAAA 57.834 33.333 0.00 0.00 0.00 1.94
455 468 8.321353 ACATACTCTTATCTGTCATGTGGAAAA 58.679 33.333 0.00 0.00 0.00 2.29
456 469 7.851228 ACATACTCTTATCTGTCATGTGGAAA 58.149 34.615 0.00 0.00 0.00 3.13
457 470 7.423844 ACATACTCTTATCTGTCATGTGGAA 57.576 36.000 0.00 0.00 0.00 3.53
458 471 7.780271 ACTACATACTCTTATCTGTCATGTGGA 59.220 37.037 0.00 0.00 30.69 4.02
459 472 7.946207 ACTACATACTCTTATCTGTCATGTGG 58.054 38.462 0.00 0.00 31.91 4.17
468 481 9.667107 GCTCAGATCTACTACATACTCTTATCT 57.333 37.037 0.00 0.00 0.00 1.98
469 482 8.889717 GGCTCAGATCTACTACATACTCTTATC 58.110 40.741 0.00 0.00 0.00 1.75
470 483 7.551262 CGGCTCAGATCTACTACATACTCTTAT 59.449 40.741 0.00 0.00 0.00 1.73
471 484 6.874664 CGGCTCAGATCTACTACATACTCTTA 59.125 42.308 0.00 0.00 0.00 2.10
472 485 5.703592 CGGCTCAGATCTACTACATACTCTT 59.296 44.000 0.00 0.00 0.00 2.85
473 486 5.221762 ACGGCTCAGATCTACTACATACTCT 60.222 44.000 0.00 0.00 0.00 3.24
474 487 4.998672 ACGGCTCAGATCTACTACATACTC 59.001 45.833 0.00 0.00 0.00 2.59
475 488 4.975631 ACGGCTCAGATCTACTACATACT 58.024 43.478 0.00 0.00 0.00 2.12
476 489 5.238868 TCAACGGCTCAGATCTACTACATAC 59.761 44.000 0.00 0.00 0.00 2.39
477 490 5.374071 TCAACGGCTCAGATCTACTACATA 58.626 41.667 0.00 0.00 0.00 2.29
478 491 4.207955 TCAACGGCTCAGATCTACTACAT 58.792 43.478 0.00 0.00 0.00 2.29
479 492 3.617284 TCAACGGCTCAGATCTACTACA 58.383 45.455 0.00 0.00 0.00 2.74
480 493 4.276183 TGATCAACGGCTCAGATCTACTAC 59.724 45.833 0.00 0.00 39.07 2.73
481 494 4.276183 GTGATCAACGGCTCAGATCTACTA 59.724 45.833 0.00 0.00 39.07 1.82
482 495 3.067461 GTGATCAACGGCTCAGATCTACT 59.933 47.826 0.00 0.00 39.07 2.57
483 496 3.181486 TGTGATCAACGGCTCAGATCTAC 60.181 47.826 0.00 0.00 39.07 2.59
484 497 3.023832 TGTGATCAACGGCTCAGATCTA 58.976 45.455 0.00 0.00 39.07 1.98
485 498 1.827344 TGTGATCAACGGCTCAGATCT 59.173 47.619 0.00 0.00 39.07 2.75
486 499 2.299993 TGTGATCAACGGCTCAGATC 57.700 50.000 0.00 0.00 38.84 2.75
487 500 2.996249 ATGTGATCAACGGCTCAGAT 57.004 45.000 0.00 0.00 0.00 2.90
488 501 2.768253 AATGTGATCAACGGCTCAGA 57.232 45.000 0.00 0.00 0.00 3.27
489 502 3.935203 ACTTAATGTGATCAACGGCTCAG 59.065 43.478 0.00 0.00 0.00 3.35
490 503 3.937814 ACTTAATGTGATCAACGGCTCA 58.062 40.909 0.00 0.00 0.00 4.26
491 504 5.005779 CACTACTTAATGTGATCAACGGCTC 59.994 44.000 0.00 0.00 36.38 4.70
492 505 4.870426 CACTACTTAATGTGATCAACGGCT 59.130 41.667 0.00 0.00 36.38 5.52
493 506 4.034048 CCACTACTTAATGTGATCAACGGC 59.966 45.833 0.00 0.00 36.38 5.68
494 507 5.175859 ACCACTACTTAATGTGATCAACGG 58.824 41.667 0.00 0.00 36.38 4.44
495 508 6.721571 AACCACTACTTAATGTGATCAACG 57.278 37.500 0.00 0.00 36.38 4.10
496 509 8.997621 TCTAACCACTACTTAATGTGATCAAC 57.002 34.615 0.00 0.00 36.38 3.18
508 521 9.544579 AGGTAAGAGTTAATCTAACCACTACTT 57.455 33.333 0.00 0.00 37.23 2.24
509 522 9.544579 AAGGTAAGAGTTAATCTAACCACTACT 57.455 33.333 0.00 0.00 37.23 2.57
510 523 9.800433 GAAGGTAAGAGTTAATCTAACCACTAC 57.200 37.037 0.00 0.00 37.23 2.73
511 524 9.765295 AGAAGGTAAGAGTTAATCTAACCACTA 57.235 33.333 0.00 0.00 37.23 2.74
512 525 8.667592 AGAAGGTAAGAGTTAATCTAACCACT 57.332 34.615 0.00 0.00 37.23 4.00
515 528 9.814899 GGTAAGAAGGTAAGAGTTAATCTAACC 57.185 37.037 0.00 0.00 37.23 2.85
518 531 9.986157 TGAGGTAAGAAGGTAAGAGTTAATCTA 57.014 33.333 0.00 0.00 37.23 1.98
519 532 8.896722 TGAGGTAAGAAGGTAAGAGTTAATCT 57.103 34.615 0.00 0.00 41.27 2.40
523 536 9.710818 ACATATGAGGTAAGAAGGTAAGAGTTA 57.289 33.333 10.38 0.00 0.00 2.24
524 537 8.611051 ACATATGAGGTAAGAAGGTAAGAGTT 57.389 34.615 10.38 0.00 0.00 3.01
525 538 9.710818 TTACATATGAGGTAAGAAGGTAAGAGT 57.289 33.333 10.38 0.00 0.00 3.24
530 543 9.496710 TCCTTTTACATATGAGGTAAGAAGGTA 57.503 33.333 10.38 1.93 38.46 3.08
531 544 8.388656 TCCTTTTACATATGAGGTAAGAAGGT 57.611 34.615 10.38 0.00 38.46 3.50
532 545 7.934120 CCTCCTTTTACATATGAGGTAAGAAGG 59.066 40.741 10.38 11.65 38.54 3.46
533 546 7.934120 CCCTCCTTTTACATATGAGGTAAGAAG 59.066 40.741 10.38 1.03 40.82 2.85
534 547 7.147373 CCCCTCCTTTTACATATGAGGTAAGAA 60.147 40.741 10.38 0.00 40.82 2.52
535 548 6.329197 CCCCTCCTTTTACATATGAGGTAAGA 59.671 42.308 10.38 0.00 40.82 2.10
536 549 6.465894 CCCCCTCCTTTTACATATGAGGTAAG 60.466 46.154 10.38 7.10 40.82 2.34
537 550 5.371472 CCCCCTCCTTTTACATATGAGGTAA 59.629 44.000 10.38 0.00 40.82 2.85
538 551 4.911522 CCCCCTCCTTTTACATATGAGGTA 59.088 45.833 10.38 0.00 40.82 3.08
539 552 3.722101 CCCCCTCCTTTTACATATGAGGT 59.278 47.826 10.38 0.00 40.82 3.85
540 553 3.722101 ACCCCCTCCTTTTACATATGAGG 59.278 47.826 10.38 5.76 41.84 3.86
541 554 6.329197 TCTTACCCCCTCCTTTTACATATGAG 59.671 42.308 10.38 0.00 0.00 2.90
542 555 6.214278 TCTTACCCCCTCCTTTTACATATGA 58.786 40.000 10.38 0.00 0.00 2.15
543 556 6.465894 CCTCTTACCCCCTCCTTTTACATATG 60.466 46.154 0.00 0.00 0.00 1.78
544 557 5.611408 CCTCTTACCCCCTCCTTTTACATAT 59.389 44.000 0.00 0.00 0.00 1.78
545 558 4.973211 CCTCTTACCCCCTCCTTTTACATA 59.027 45.833 0.00 0.00 0.00 2.29
546 559 3.786450 CCTCTTACCCCCTCCTTTTACAT 59.214 47.826 0.00 0.00 0.00 2.29
547 560 3.187112 CCTCTTACCCCCTCCTTTTACA 58.813 50.000 0.00 0.00 0.00 2.41
548 561 2.508716 CCCTCTTACCCCCTCCTTTTAC 59.491 54.545 0.00 0.00 0.00 2.01
549 562 2.391389 TCCCTCTTACCCCCTCCTTTTA 59.609 50.000 0.00 0.00 0.00 1.52
550 563 1.155745 TCCCTCTTACCCCCTCCTTTT 59.844 52.381 0.00 0.00 0.00 2.27
551 564 0.804255 TCCCTCTTACCCCCTCCTTT 59.196 55.000 0.00 0.00 0.00 3.11
552 565 0.343726 CTCCCTCTTACCCCCTCCTT 59.656 60.000 0.00 0.00 0.00 3.36
553 566 2.028659 CTCCCTCTTACCCCCTCCT 58.971 63.158 0.00 0.00 0.00 3.69
554 567 1.766864 GCTCCCTCTTACCCCCTCC 60.767 68.421 0.00 0.00 0.00 4.30
555 568 0.400670 ATGCTCCCTCTTACCCCCTC 60.401 60.000 0.00 0.00 0.00 4.30
556 569 0.695803 CATGCTCCCTCTTACCCCCT 60.696 60.000 0.00 0.00 0.00 4.79
557 570 0.988678 ACATGCTCCCTCTTACCCCC 60.989 60.000 0.00 0.00 0.00 5.40
558 571 0.919710 AACATGCTCCCTCTTACCCC 59.080 55.000 0.00 0.00 0.00 4.95
559 572 3.926058 TTAACATGCTCCCTCTTACCC 57.074 47.619 0.00 0.00 0.00 3.69
560 573 6.775594 AATTTTAACATGCTCCCTCTTACC 57.224 37.500 0.00 0.00 0.00 2.85
561 574 6.531594 GCAAATTTTAACATGCTCCCTCTTAC 59.468 38.462 0.00 0.00 35.93 2.34
562 575 6.350949 GGCAAATTTTAACATGCTCCCTCTTA 60.351 38.462 0.00 0.00 38.79 2.10
563 576 5.482006 GCAAATTTTAACATGCTCCCTCTT 58.518 37.500 0.00 0.00 35.93 2.85
564 577 4.081476 GGCAAATTTTAACATGCTCCCTCT 60.081 41.667 0.00 0.00 38.79 3.69
565 578 4.183865 GGCAAATTTTAACATGCTCCCTC 58.816 43.478 0.00 0.00 38.79 4.30
566 579 3.582208 TGGCAAATTTTAACATGCTCCCT 59.418 39.130 0.00 0.00 38.79 4.20
567 580 3.936564 TGGCAAATTTTAACATGCTCCC 58.063 40.909 0.00 0.00 38.79 4.30
568 581 7.790823 ATAATGGCAAATTTTAACATGCTCC 57.209 32.000 0.00 0.00 38.79 4.70
583 596 9.712305 GCTCTTAATAGTCTCTAATAATGGCAA 57.288 33.333 0.00 0.00 0.00 4.52
584 597 8.314751 GGCTCTTAATAGTCTCTAATAATGGCA 58.685 37.037 0.00 0.00 0.00 4.92
585 598 8.314751 TGGCTCTTAATAGTCTCTAATAATGGC 58.685 37.037 0.00 0.00 0.00 4.40
586 599 9.646427 GTGGCTCTTAATAGTCTCTAATAATGG 57.354 37.037 0.00 0.00 0.00 3.16
587 600 9.646427 GGTGGCTCTTAATAGTCTCTAATAATG 57.354 37.037 0.00 0.00 0.00 1.90
588 601 9.381038 TGGTGGCTCTTAATAGTCTCTAATAAT 57.619 33.333 0.00 0.00 0.00 1.28
601 614 1.852633 GCCCTTTGGTGGCTCTTAAT 58.147 50.000 0.00 0.00 45.70 1.40
612 625 3.406595 CTAGGAGGCCGCCCTTTGG 62.407 68.421 23.50 1.51 43.12 3.28
621 635 0.739561 CGTAGACACACTAGGAGGCC 59.260 60.000 0.00 0.00 38.71 5.19
628 642 2.032636 CACACGACACGTAGACACACTA 60.033 50.000 0.00 0.00 38.32 2.74
631 645 0.593008 GCACACGACACGTAGACACA 60.593 55.000 0.00 0.00 38.32 3.72
632 646 1.273455 GGCACACGACACGTAGACAC 61.273 60.000 0.00 0.00 38.32 3.67
637 651 1.270274 AGTATTGGCACACGACACGTA 59.730 47.619 0.00 0.00 39.29 3.57
644 658 2.223735 ACCTATCGAGTATTGGCACACG 60.224 50.000 0.00 0.00 39.29 4.49
645 659 3.454371 ACCTATCGAGTATTGGCACAC 57.546 47.619 0.00 0.00 39.29 3.82
646 660 3.449377 TCAACCTATCGAGTATTGGCACA 59.551 43.478 0.00 0.00 34.13 4.57
647 661 4.051922 CTCAACCTATCGAGTATTGGCAC 58.948 47.826 0.00 0.00 34.13 5.01
648 662 3.492656 GCTCAACCTATCGAGTATTGGCA 60.493 47.826 0.00 0.00 34.13 4.92
649 663 3.060602 GCTCAACCTATCGAGTATTGGC 58.939 50.000 0.00 0.00 34.13 4.52
650 664 4.592485 AGCTCAACCTATCGAGTATTGG 57.408 45.455 0.00 0.00 36.62 3.16
651 665 5.592054 TCAAGCTCAACCTATCGAGTATTG 58.408 41.667 0.00 0.00 33.25 1.90
652 666 5.854010 TCAAGCTCAACCTATCGAGTATT 57.146 39.130 0.00 0.00 0.00 1.89
653 667 6.412362 AATCAAGCTCAACCTATCGAGTAT 57.588 37.500 0.00 0.00 0.00 2.12
654 668 5.854010 AATCAAGCTCAACCTATCGAGTA 57.146 39.130 0.00 0.00 0.00 2.59
655 669 4.744795 AATCAAGCTCAACCTATCGAGT 57.255 40.909 0.00 0.00 0.00 4.18
683 697 1.144496 GGCGCATGGGCAAATCATT 59.856 52.632 32.47 0.00 41.24 2.57
685 699 2.362760 AGGCGCATGGGCAAATCA 60.363 55.556 32.47 0.00 45.36 2.57
686 700 2.068277 GAGAGGCGCATGGGCAAATC 62.068 60.000 32.47 25.30 45.36 2.17
688 702 2.751436 GAGAGGCGCATGGGCAAA 60.751 61.111 32.47 0.00 45.36 3.68
691 705 4.166888 TCAGAGAGGCGCATGGGC 62.167 66.667 25.48 25.48 42.69 5.36
692 706 2.202987 GTCAGAGAGGCGCATGGG 60.203 66.667 10.83 5.19 0.00 4.00
695 709 1.068281 CAGTATGTCAGAGAGGCGCAT 59.932 52.381 10.83 0.00 0.00 4.73
696 710 0.457443 CAGTATGTCAGAGAGGCGCA 59.543 55.000 10.83 0.00 0.00 6.09
697 711 3.264666 CAGTATGTCAGAGAGGCGC 57.735 57.895 0.00 0.00 0.00 6.53
709 724 2.337583 CCGAGACCAACACACAGTATG 58.662 52.381 0.00 0.00 46.00 2.39
738 753 1.000607 TGGCATCGCGGTATTCTAGTC 60.001 52.381 6.13 0.00 0.00 2.59
766 781 6.015434 GGATTGTCTGGTGTGGTCTAATTTTT 60.015 38.462 0.00 0.00 0.00 1.94
792 807 6.753897 ATGAAAATTGCTCTTCGTTTTGAC 57.246 33.333 0.00 0.00 0.00 3.18
797 812 3.989817 GCCAATGAAAATTGCTCTTCGTT 59.010 39.130 0.00 0.00 32.28 3.85
860 875 1.153349 CGAAGGCTAGGAGGGCAAC 60.153 63.158 0.00 0.00 0.00 4.17
913 928 3.592059 GAGTGGTTGCTAATAACACGGA 58.408 45.455 0.00 0.00 32.22 4.69
1107 1130 1.051556 GCTTAGAGGTGAGGAGGGGG 61.052 65.000 0.00 0.00 0.00 5.40
1308 1335 1.270252 CCCAACAAACACATGCCTTCC 60.270 52.381 0.00 0.00 0.00 3.46
1458 1485 4.643387 GTGTTGTGCGGGGAGGCT 62.643 66.667 0.00 0.00 0.00 4.58
1562 1589 6.484977 GGCAATTCGAGAATAGGAAGAGAAAT 59.515 38.462 0.00 0.00 0.00 2.17
1682 1710 0.899253 CATTGACCATGGTGGCCACA 60.899 55.000 35.78 22.39 42.67 4.17
1699 1727 3.210012 AAGGCCACCTTGTCGCCAT 62.210 57.895 5.01 0.00 42.96 4.40
1727 1755 1.198759 GGTGGGGACTGTAGAAGGCA 61.199 60.000 0.00 0.00 34.40 4.75
2043 2071 4.947147 GCCGGCAGGGTTGACACA 62.947 66.667 24.80 0.00 38.44 3.72
2066 2094 2.739379 GCTGCCAGAGAAGTTGTAGTTC 59.261 50.000 0.00 0.00 0.00 3.01
2100 2128 1.377505 CGAATTTGTTTGTGCGTACGC 59.622 47.619 32.49 32.49 42.35 4.42
2103 2131 4.274421 TGTTCGAATTTGTTTGTGCGTA 57.726 36.364 0.00 0.00 0.00 4.42
2138 2166 7.099266 AGATTTGCAATTAATTCATCGGTCA 57.901 32.000 0.00 0.00 0.00 4.02
2294 2322 1.073722 TGAGGAACTTGGCTGCCTG 59.926 57.895 21.03 14.75 41.55 4.85
2350 2378 4.706035 AGTCCGACGATCAGTAGTAGAAT 58.294 43.478 0.00 0.00 0.00 2.40
2365 2393 6.092259 AGCACTTAATATTGTTTGAGTCCGAC 59.908 38.462 0.00 0.00 0.00 4.79
2368 2396 7.593825 ACAAGCACTTAATATTGTTTGAGTCC 58.406 34.615 8.23 0.00 37.37 3.85
2411 2443 7.080353 TGATAACAGATGAACATTGCAAGAG 57.920 36.000 4.94 2.40 0.00 2.85
2417 2449 6.372381 TGGACACTGATAACAGATGAACATTG 59.628 38.462 7.05 0.00 46.03 2.82
2420 2452 5.482163 TGGACACTGATAACAGATGAACA 57.518 39.130 7.05 4.23 46.03 3.18
2421 2453 6.801539 TTTGGACACTGATAACAGATGAAC 57.198 37.500 7.05 2.11 46.03 3.18
2486 2520 2.654749 TGCACACCTACGAATCAGAG 57.345 50.000 0.00 0.00 0.00 3.35
2610 2651 6.017275 GGCTCCATGAAGTTCATCAGATTAAG 60.017 42.308 15.60 2.33 34.28 1.85
2890 3220 2.224281 ACTCTGCCGAACAACAAGATCA 60.224 45.455 0.00 0.00 0.00 2.92
3116 3446 9.547753 GCTTCTTTCATCAACTATAACCATAGA 57.452 33.333 0.00 0.00 38.03 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.