Multiple sequence alignment - TraesCS3D01G532800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G532800 chr3D 100.000 4008 0 0 1 4008 608666936 608670943 0.000000e+00 7402.0
1 TraesCS3D01G532800 chr3A 91.597 2392 116 32 702 3047 741753835 741756187 0.000000e+00 3225.0
2 TraesCS3D01G532800 chr3A 92.805 959 38 14 3073 4008 741756183 741757133 0.000000e+00 1360.0
3 TraesCS3D01G532800 chr3A 88.412 466 27 9 196 661 741753395 741753833 1.640000e-148 536.0
4 TraesCS3D01G532800 chr3A 81.592 201 20 10 1 201 741753148 741753331 2.500000e-32 150.0
5 TraesCS3D01G532800 chr3B 93.147 1649 68 22 32 1656 818850874 818849247 0.000000e+00 2377.0
6 TraesCS3D01G532800 chr3B 91.557 1741 92 23 1654 3355 818849144 818847420 0.000000e+00 2350.0
7 TraesCS3D01G532800 chr3B 97.500 40 1 0 3372 3411 818847422 818847383 7.190000e-08 69.4
8 TraesCS3D01G532800 chr5B 89.172 157 13 2 3259 3411 447452559 447452403 4.090000e-45 193.0
9 TraesCS3D01G532800 chr5B 97.059 34 1 0 3786 3819 641803678 641803711 1.560000e-04 58.4
10 TraesCS3D01G532800 chr5A 97.059 34 1 0 3786 3819 639091268 639091301 1.560000e-04 58.4
11 TraesCS3D01G532800 chr5D 100.000 29 0 0 3786 3814 510903167 510903195 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G532800 chr3D 608666936 608670943 4007 False 7402.00 7402 100.0000 1 4008 1 chr3D.!!$F1 4007
1 TraesCS3D01G532800 chr3A 741753148 741757133 3985 False 1317.75 3225 88.6015 1 4008 4 chr3A.!!$F1 4007
2 TraesCS3D01G532800 chr3B 818847383 818850874 3491 True 1598.80 2377 94.0680 32 3411 3 chr3B.!!$R1 3379

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
448 517 0.108804 TCAGTTGGTTCGATCCTCGC 60.109 55.000 13.55 4.23 40.21 5.03 F
560 637 1.345741 CATATCTCCTGCACCGTCCAT 59.654 52.381 0.00 0.00 0.00 3.41 F
2194 2413 1.555967 ACAACCGGCTAATTTGGCAT 58.444 45.000 13.40 0.00 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2033 2249 0.606604 TACTCCACCTCCGCAAACTC 59.393 55.000 0.00 0.00 0.00 3.01 R
2364 2608 1.274447 GGTAGTAACTCCTGCCACGTT 59.726 52.381 0.00 0.00 37.20 3.99 R
3737 4027 1.722034 ACTGGTCCTCAGAAGCTTCA 58.278 50.000 27.57 7.77 46.18 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 8.918202 ATTTAATGGATATCGCCTAAAGTTCA 57.082 30.769 0.00 0.00 0.00 3.18
33 34 3.728845 TGGATATCGCCTAAAGTTCAGC 58.271 45.455 0.00 0.00 0.00 4.26
34 35 3.388024 TGGATATCGCCTAAAGTTCAGCT 59.612 43.478 0.00 0.00 0.00 4.24
35 36 3.743396 GGATATCGCCTAAAGTTCAGCTG 59.257 47.826 7.63 7.63 0.00 4.24
36 37 2.029838 ATCGCCTAAAGTTCAGCTGG 57.970 50.000 15.13 0.00 0.00 4.85
37 38 0.673644 TCGCCTAAAGTTCAGCTGGC 60.674 55.000 15.13 5.55 37.24 4.85
38 39 1.796796 GCCTAAAGTTCAGCTGGCG 59.203 57.895 15.13 0.00 0.00 5.69
120 121 3.993920 ACATGAATTTGCCACTGAAACC 58.006 40.909 0.00 0.00 0.00 3.27
123 124 5.047802 ACATGAATTTGCCACTGAAACCTAG 60.048 40.000 0.00 0.00 0.00 3.02
128 129 7.232534 TGAATTTGCCACTGAAACCTAGTTAAT 59.767 33.333 0.00 0.00 0.00 1.40
130 131 8.644374 ATTTGCCACTGAAACCTAGTTAATTA 57.356 30.769 0.00 0.00 0.00 1.40
131 132 8.644374 TTTGCCACTGAAACCTAGTTAATTAT 57.356 30.769 0.00 0.00 0.00 1.28
132 133 7.624360 TGCCACTGAAACCTAGTTAATTATG 57.376 36.000 0.00 0.00 0.00 1.90
135 136 9.169592 GCCACTGAAACCTAGTTAATTATGTAA 57.830 33.333 0.00 0.00 0.00 2.41
257 326 6.658188 ACTCTAGATGGGCAGTAGATTAAC 57.342 41.667 0.00 0.00 0.00 2.01
281 350 3.185880 ACTCTGGTGCCCTTAGTTCTA 57.814 47.619 0.00 0.00 0.00 2.10
448 517 0.108804 TCAGTTGGTTCGATCCTCGC 60.109 55.000 13.55 4.23 40.21 5.03
560 637 1.345741 CATATCTCCTGCACCGTCCAT 59.654 52.381 0.00 0.00 0.00 3.41
622 699 3.374764 AGGGGTTATCAAATCAAAGGGC 58.625 45.455 0.00 0.00 0.00 5.19
673 754 1.933247 GCTAGCTAGCTGTCCAGTTG 58.067 55.000 33.71 7.75 45.62 3.16
674 755 1.933247 CTAGCTAGCTGTCCAGTTGC 58.067 55.000 27.68 0.00 0.00 4.17
718 799 5.322754 TGTCCAGCAGAAGTAAGTAGTACT 58.677 41.667 0.00 0.00 45.48 2.73
719 800 5.183331 TGTCCAGCAGAAGTAAGTAGTACTG 59.817 44.000 5.39 0.00 42.55 2.74
724 805 5.768662 AGCAGAAGTAAGTAGTACTGACACA 59.231 40.000 18.41 0.00 42.55 3.72
738 819 4.220724 ACTGACACAGGAGTAGTTACCAA 58.779 43.478 0.00 0.00 35.51 3.67
761 842 7.721399 CCAAAGCTAGGGTGAATATACAATTCT 59.279 37.037 0.00 0.00 0.00 2.40
850 932 5.103940 CCCTTATATATACCCTGCAATGGCT 60.104 44.000 1.87 0.00 41.91 4.75
1164 1258 5.051374 CGCTGATAATTCTTCTTCTTCCGAC 60.051 44.000 0.00 0.00 0.00 4.79
1380 1474 5.511373 CGTCCCTCATATCTATGCCAAGAAA 60.511 44.000 0.00 0.00 33.76 2.52
1387 1481 7.944061 TCATATCTATGCCAAGAAAAACCATG 58.056 34.615 0.00 0.00 33.76 3.66
1390 1484 6.509418 TCTATGCCAAGAAAAACCATGTAC 57.491 37.500 0.00 0.00 0.00 2.90
1625 1732 7.235812 AGTTTCACCCTATATCAACCTATCTCC 59.764 40.741 0.00 0.00 0.00 3.71
1733 1945 4.426416 CATAATCACCATGGTGCAACTTG 58.574 43.478 35.73 24.07 45.04 3.16
1759 1971 3.925379 TGACATATGAAAGACAGCGTGT 58.075 40.909 10.38 0.00 0.00 4.49
1760 1972 3.679502 TGACATATGAAAGACAGCGTGTG 59.320 43.478 10.38 0.00 0.00 3.82
1761 1973 3.664107 ACATATGAAAGACAGCGTGTGT 58.336 40.909 10.38 0.00 44.49 3.72
2030 2246 2.967459 TCGTTGCATGCAAGTAAGTG 57.033 45.000 32.64 17.41 36.52 3.16
2031 2247 2.488952 TCGTTGCATGCAAGTAAGTGA 58.511 42.857 32.64 19.20 36.52 3.41
2032 2248 2.480037 TCGTTGCATGCAAGTAAGTGAG 59.520 45.455 32.64 15.64 36.52 3.51
2033 2249 2.413239 CGTTGCATGCAAGTAAGTGAGG 60.413 50.000 32.64 11.43 36.52 3.86
2041 2260 2.096218 GCAAGTAAGTGAGGAGTTTGCG 60.096 50.000 0.00 0.00 31.52 4.85
2194 2413 1.555967 ACAACCGGCTAATTTGGCAT 58.444 45.000 13.40 0.00 0.00 4.40
2341 2585 7.374975 TGGATAAATTTTGGTGGTGGTAAAA 57.625 32.000 0.00 0.00 0.00 1.52
2342 2586 7.217906 TGGATAAATTTTGGTGGTGGTAAAAC 58.782 34.615 0.00 0.00 0.00 2.43
2364 2608 7.887996 AACGGTAATAACTAAATTGACGTGA 57.112 32.000 0.00 0.00 34.77 4.35
2517 2761 2.046507 CCTCCAGCAGCAGACCAC 60.047 66.667 0.00 0.00 0.00 4.16
2564 2811 0.480252 AAGCTCCAAGAAGCCCAAGT 59.520 50.000 0.00 0.00 43.56 3.16
2750 3003 2.173669 CCCAACTGCTCGCCGTATG 61.174 63.158 0.00 0.00 0.00 2.39
2764 3017 1.153978 GTATGTGTTCGACGGCGGA 60.154 57.895 12.58 0.00 38.28 5.54
2771 3024 2.089936 TTCGACGGCGGATTGTTCG 61.090 57.895 12.58 10.61 38.28 3.95
2776 3029 2.452813 CGGCGGATTGTTCGGTGAG 61.453 63.158 0.00 0.00 0.00 3.51
2836 3089 2.605607 CCTGGAGGACATGGTGCCA 61.606 63.158 0.00 0.00 37.39 4.92
3065 3318 2.135933 GATCGGGAACAATTAGGCTCG 58.864 52.381 0.00 0.00 0.00 5.03
3413 3703 6.880484 TGTAGTGTGTTAACTTTTCTCTGGA 58.120 36.000 7.22 0.00 0.00 3.86
3450 3740 0.819582 CAGGGGCACAATTGACCATC 59.180 55.000 13.59 9.08 43.51 3.51
3453 3743 3.148918 AGGGGCACAATTGACCATCTTG 61.149 50.000 13.59 0.00 43.51 3.02
3457 3747 3.005684 GGCACAATTGACCATCTTGTTCA 59.994 43.478 13.59 0.00 30.99 3.18
3464 3754 9.295825 ACAATTGACCATCTTGTTCAGTTATTA 57.704 29.630 13.59 0.00 29.06 0.98
3546 3836 0.177836 GGCCCATGGTACCATTTTGC 59.822 55.000 25.25 23.85 33.90 3.68
3617 3907 9.154847 CATAGCAACTATATAGTGCAAATGCTA 57.845 33.333 30.26 30.26 44.72 3.49
3624 3914 9.029368 ACTATATAGTGCAAATGCTAGATCTCA 57.971 33.333 14.71 0.00 42.66 3.27
3637 3927 5.362143 TGCTAGATCTCACTTACTGCAAGAT 59.638 40.000 0.00 0.00 37.71 2.40
3708 3998 2.675075 ACCGACAAAATGGCCCGG 60.675 61.111 12.14 12.14 45.09 5.73
3737 4027 1.796459 GTGTGATACGAGCGGTTTTGT 59.204 47.619 0.00 0.00 0.00 2.83
3791 4081 6.647334 TCCATCATGTCACTTAAAAAGCAA 57.353 33.333 0.00 0.00 0.00 3.91
3814 4104 7.710907 GCAACTTATTAAATGGGGAAGGAATTC 59.289 37.037 0.00 0.00 0.00 2.17
3848 4138 3.703052 GGCTCTGATGACCCATTCATTTT 59.297 43.478 0.00 0.00 45.67 1.82
3902 4192 5.429762 TGGATCTTTCCTCCATATCTGTTGT 59.570 40.000 0.00 0.00 43.07 3.32
3909 4199 4.285775 TCCTCCATATCTGTTGTGTGTGAA 59.714 41.667 0.00 0.00 0.00 3.18
3910 4200 5.045651 TCCTCCATATCTGTTGTGTGTGAAT 60.046 40.000 0.00 0.00 0.00 2.57
3924 4214 7.181569 TGTGTGTGAATCTAGGTTGATATCA 57.818 36.000 0.00 0.00 0.00 2.15
3991 4296 6.120905 CCACTCCAATCTCAATCTTCTGATT 58.879 40.000 0.00 0.00 43.10 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.014068 GCCAGCTGAACTTTAGGCGAT 61.014 52.381 17.39 0.00 31.88 4.58
19 20 1.796796 GCCAGCTGAACTTTAGGCG 59.203 57.895 17.39 0.00 31.88 5.52
20 21 0.673644 TCGCCAGCTGAACTTTAGGC 60.674 55.000 17.39 6.30 38.73 3.93
21 22 1.363744 CTCGCCAGCTGAACTTTAGG 58.636 55.000 17.39 0.00 0.00 2.69
22 23 0.723981 GCTCGCCAGCTGAACTTTAG 59.276 55.000 17.39 4.79 43.09 1.85
34 35 1.453015 ACAAAAGTGTGGCTCGCCA 60.453 52.632 6.52 6.52 45.02 5.69
35 36 3.432186 ACAAAAGTGTGGCTCGCC 58.568 55.556 0.00 0.00 36.31 5.54
43 44 3.874392 AGAAGCAAAGCACAAAAGTGT 57.126 38.095 0.00 0.00 39.07 3.55
86 87 7.990314 TGGCAAATTCATGTAATGCTACTACTA 59.010 33.333 11.42 0.00 46.21 1.82
163 164 8.918658 CACTCAATTTGTTGGTGAATAATTGAG 58.081 33.333 23.67 23.67 44.51 3.02
168 169 6.403866 AGCACTCAATTTGTTGGTGAATAA 57.596 33.333 17.10 0.00 0.00 1.40
201 202 2.125912 GACTGCGCCATCGTGTCT 60.126 61.111 4.18 0.00 37.85 3.41
212 281 1.070577 CGTTCCAACTGAAAGACTGCG 60.071 52.381 0.00 0.00 37.43 5.18
327 396 2.026905 GCACAACTTTCCCCCAAGTCA 61.027 52.381 0.00 0.00 35.87 3.41
497 570 1.408702 GGGCACACACACTCACAATTT 59.591 47.619 0.00 0.00 0.00 1.82
498 571 1.032014 GGGCACACACACTCACAATT 58.968 50.000 0.00 0.00 0.00 2.32
500 573 0.833949 TAGGGCACACACACTCACAA 59.166 50.000 0.00 0.00 0.00 3.33
560 637 3.039743 GGGGGTTGGTTTAACTTGGAAA 58.960 45.455 0.00 0.00 39.31 3.13
622 699 7.488187 TCAAATAGTAGTAGTAGCAGGTACG 57.512 40.000 4.10 0.00 36.66 3.67
668 749 2.129607 GCAATTCAAGTGGTGCAACTG 58.870 47.619 2.04 0.00 36.97 3.16
669 750 1.755959 TGCAATTCAAGTGGTGCAACT 59.244 42.857 2.04 0.00 43.65 3.16
670 751 2.222007 TGCAATTCAAGTGGTGCAAC 57.778 45.000 0.00 0.00 43.65 4.17
718 799 4.502604 GCTTTGGTAACTACTCCTGTGTCA 60.503 45.833 0.00 0.00 37.61 3.58
719 800 3.995048 GCTTTGGTAACTACTCCTGTGTC 59.005 47.826 0.00 0.00 37.61 3.67
724 805 4.031611 CCCTAGCTTTGGTAACTACTCCT 58.968 47.826 0.00 0.00 37.61 3.69
738 819 7.072454 TGGAGAATTGTATATTCACCCTAGCTT 59.928 37.037 10.20 0.00 37.78 3.74
850 932 2.017668 ATTGCACCAACCCAGTCCCA 62.018 55.000 0.00 0.00 0.00 4.37
980 1062 1.621814 TGGACAACACCTGGCTACTAC 59.378 52.381 0.00 0.00 31.36 2.73
1137 1231 5.295540 GGAAGAAGAAGAATTATCAGCGCTT 59.704 40.000 7.50 0.00 0.00 4.68
1164 1258 0.392998 CCTCGTCACCAATCCCCTTG 60.393 60.000 0.00 0.00 34.42 3.61
1380 1474 4.628333 CGGAGAATTGTACGTACATGGTTT 59.372 41.667 27.82 18.22 35.89 3.27
1387 1481 4.674211 GCATCTACGGAGAATTGTACGTAC 59.326 45.833 15.55 18.90 40.38 3.67
1390 1484 3.702330 TGCATCTACGGAGAATTGTACG 58.298 45.455 0.00 5.53 34.61 3.67
1639 1746 9.770503 GGCTAAGAACTACAAGTAATTAAAAGC 57.229 33.333 0.00 0.00 0.00 3.51
1733 1945 4.656041 GCTGTCTTTCATATGTCAACTGC 58.344 43.478 1.90 8.87 0.00 4.40
2030 2246 1.376037 CCACCTCCGCAAACTCCTC 60.376 63.158 0.00 0.00 0.00 3.71
2031 2247 1.831652 CTCCACCTCCGCAAACTCCT 61.832 60.000 0.00 0.00 0.00 3.69
2032 2248 1.376037 CTCCACCTCCGCAAACTCC 60.376 63.158 0.00 0.00 0.00 3.85
2033 2249 0.606604 TACTCCACCTCCGCAAACTC 59.393 55.000 0.00 0.00 0.00 3.01
2041 2260 2.303175 CTACTCAGCTACTCCACCTCC 58.697 57.143 0.00 0.00 0.00 4.30
2194 2413 3.270027 CCATGCTCCACTATCGTTTTCA 58.730 45.455 0.00 0.00 0.00 2.69
2243 2462 6.152932 AGAGTGTGCAATTTGACTGAATTT 57.847 33.333 0.00 0.00 0.00 1.82
2245 2464 7.458409 AATAGAGTGTGCAATTTGACTGAAT 57.542 32.000 0.00 0.00 0.00 2.57
2313 2557 7.560796 ACCACCACCAAAATTTATCCAATAA 57.439 32.000 0.00 0.00 0.00 1.40
2322 2566 4.081031 ACCGTTTTACCACCACCAAAATTT 60.081 37.500 0.00 0.00 0.00 1.82
2341 2585 7.410728 CGTTCACGTCAATTTAGTTATTACCGT 60.411 37.037 0.00 0.00 34.11 4.83
2342 2586 6.890870 CGTTCACGTCAATTTAGTTATTACCG 59.109 38.462 0.00 0.00 34.11 4.02
2364 2608 1.274447 GGTAGTAACTCCTGCCACGTT 59.726 52.381 0.00 0.00 37.20 3.99
2750 3003 1.562575 AACAATCCGCCGTCGAACAC 61.563 55.000 0.00 0.00 38.10 3.32
2929 3182 3.450115 GACGACGTGGAGGGGGAG 61.450 72.222 4.58 0.00 0.00 4.30
3053 3306 3.871594 CGATTTTCCTCGAGCCTAATTGT 59.128 43.478 6.99 0.00 41.12 2.71
3065 3318 5.222631 AGCACAAACAATTCGATTTTCCTC 58.777 37.500 0.00 0.00 0.00 3.71
3076 3329 3.472283 TGGATGCAAGCACAAACAATT 57.528 38.095 0.00 0.00 0.00 2.32
3249 3512 8.162848 TCCACCGGTACCTATACTAATATACT 57.837 38.462 6.87 0.00 0.00 2.12
3250 3513 8.844244 CATCCACCGGTACCTATACTAATATAC 58.156 40.741 6.87 0.00 0.00 1.47
3251 3514 8.560039 ACATCCACCGGTACCTATACTAATATA 58.440 37.037 6.87 0.00 0.00 0.86
3252 3515 7.416731 ACATCCACCGGTACCTATACTAATAT 58.583 38.462 6.87 0.00 0.00 1.28
3352 3642 9.767684 TTTTCACTGACAATTATATTTGCTACG 57.232 29.630 7.17 0.00 0.00 3.51
3355 3645 9.590451 CCATTTTCACTGACAATTATATTTGCT 57.410 29.630 7.17 0.00 0.00 3.91
3356 3646 9.369904 ACCATTTTCACTGACAATTATATTTGC 57.630 29.630 7.17 2.42 0.00 3.68
3360 3650 9.685276 TCTCACCATTTTCACTGACAATTATAT 57.315 29.630 0.00 0.00 0.00 0.86
3361 3651 9.685276 ATCTCACCATTTTCACTGACAATTATA 57.315 29.630 0.00 0.00 0.00 0.98
3362 3652 8.585471 ATCTCACCATTTTCACTGACAATTAT 57.415 30.769 0.00 0.00 0.00 1.28
3363 3653 9.685276 ATATCTCACCATTTTCACTGACAATTA 57.315 29.630 0.00 0.00 0.00 1.40
3364 3654 6.906157 ATCTCACCATTTTCACTGACAATT 57.094 33.333 0.00 0.00 0.00 2.32
3365 3655 7.613022 ACATATCTCACCATTTTCACTGACAAT 59.387 33.333 0.00 0.00 0.00 2.71
3366 3656 6.942005 ACATATCTCACCATTTTCACTGACAA 59.058 34.615 0.00 0.00 0.00 3.18
3367 3657 6.475504 ACATATCTCACCATTTTCACTGACA 58.524 36.000 0.00 0.00 0.00 3.58
3368 3658 6.992063 ACATATCTCACCATTTTCACTGAC 57.008 37.500 0.00 0.00 0.00 3.51
3369 3659 7.765819 CACTACATATCTCACCATTTTCACTGA 59.234 37.037 0.00 0.00 0.00 3.41
3370 3660 7.550551 ACACTACATATCTCACCATTTTCACTG 59.449 37.037 0.00 0.00 0.00 3.66
3377 3667 8.540388 AGTTAACACACTACATATCTCACCATT 58.460 33.333 8.61 0.00 0.00 3.16
3413 3703 3.262915 CCCTGAAGAGGAGAAACTCATGT 59.737 47.826 0.00 0.00 42.93 3.21
3565 3855 4.083003 CGCTAACTTAATGCCCAAACAAGA 60.083 41.667 0.00 0.00 0.00 3.02
3617 3907 4.400884 ACGATCTTGCAGTAAGTGAGATCT 59.599 41.667 16.36 0.00 40.17 2.75
3624 3914 4.457834 AAGCTACGATCTTGCAGTAAGT 57.542 40.909 0.00 0.00 37.65 2.24
3655 3945 5.046591 ACACTAGCTATGGTCTTGCTTAACA 60.047 40.000 0.00 0.00 37.18 2.41
3656 3946 5.420409 ACACTAGCTATGGTCTTGCTTAAC 58.580 41.667 0.00 0.00 37.18 2.01
3668 3958 3.452474 GCTTGAGGTGACACTAGCTATG 58.548 50.000 5.39 0.00 43.83 2.23
3708 3998 2.755650 CTCGTATCACACCTATTGGGC 58.244 52.381 0.00 0.00 39.10 5.36
3737 4027 1.722034 ACTGGTCCTCAGAAGCTTCA 58.278 50.000 27.57 7.77 46.18 3.02
3791 4081 8.343787 TCTGAATTCCTTCCCCATTTAATAAGT 58.656 33.333 2.27 0.00 0.00 2.24
3814 4104 4.094590 GTCATCAGAGCCTTCACATTTCTG 59.905 45.833 0.00 0.00 37.27 3.02
3902 4192 8.485392 TCAATGATATCAACCTAGATTCACACA 58.515 33.333 9.99 0.00 0.00 3.72
3909 4199 8.267620 TCCAACTCAATGATATCAACCTAGAT 57.732 34.615 9.99 0.00 0.00 1.98
3910 4200 7.675161 TCCAACTCAATGATATCAACCTAGA 57.325 36.000 9.99 3.08 0.00 2.43
3950 4255 3.614092 AGTGGTTGCAGGACATGATAAG 58.386 45.455 0.00 0.00 0.00 1.73
3951 4256 3.609853 GAGTGGTTGCAGGACATGATAA 58.390 45.455 0.00 0.00 0.00 1.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.