Multiple sequence alignment - TraesCS3D01G532300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G532300 chr3D 100.000 3161 0 0 1 3161 608400134 608403294 0.000000e+00 5838.0
1 TraesCS3D01G532300 chr3D 100.000 34 0 0 25 58 608395562 608395595 2.630000e-06 63.9
2 TraesCS3D01G532300 chr3A 95.725 2152 63 19 1023 3160 740888246 740886110 0.000000e+00 3437.0
3 TraesCS3D01G532300 chr3A 86.702 1128 90 30 1501 2606 143700522 143699433 0.000000e+00 1197.0
4 TraesCS3D01G532300 chr3A 86.562 640 61 16 2534 3161 740885630 740885004 0.000000e+00 682.0
5 TraesCS3D01G532300 chr3A 78.102 548 40 31 510 1023 740888783 740888282 1.120000e-69 274.0
6 TraesCS3D01G532300 chr3A 78.261 230 31 11 2670 2891 740886138 740885920 2.560000e-26 130.0
7 TraesCS3D01G532300 chr3B 93.458 2186 88 28 1023 3160 818277396 818275218 0.000000e+00 3193.0
8 TraesCS3D01G532300 chr3B 91.522 460 23 7 421 875 818278320 818277872 1.250000e-173 619.0
9 TraesCS3D01G532300 chr3B 76.966 356 34 18 25 338 818285028 818284679 3.260000e-35 159.0
10 TraesCS3D01G532300 chr4D 87.174 1536 119 29 1086 2606 311190468 311188996 0.000000e+00 1674.0
11 TraesCS3D01G532300 chr1B 86.254 1535 134 36 1086 2605 532235352 532236824 0.000000e+00 1594.0
12 TraesCS3D01G532300 chr1B 86.458 384 44 5 1322 1704 17623921 17623545 6.310000e-112 414.0
13 TraesCS3D01G532300 chr6A 83.148 1531 176 42 1086 2606 320299389 320300847 0.000000e+00 1323.0
14 TraesCS3D01G532300 chr6A 83.639 1253 137 36 1087 2323 43118165 43119365 0.000000e+00 1116.0
15 TraesCS3D01G532300 chr6A 82.921 1253 137 38 1087 2323 43103215 43104406 0.000000e+00 1057.0
16 TraesCS3D01G532300 chrUn 87.066 835 71 21 1083 1899 325727627 325728442 0.000000e+00 909.0
17 TraesCS3D01G532300 chrUn 87.139 832 70 21 1086 1899 334361412 334360600 0.000000e+00 909.0
18 TraesCS3D01G532300 chr2B 87.376 808 69 10 1086 1887 175745678 175746458 0.000000e+00 896.0
19 TraesCS3D01G532300 chr2B 83.678 821 66 29 1084 1899 368311452 368310695 0.000000e+00 712.0
20 TraesCS3D01G532300 chr4A 83.996 956 109 23 1086 2035 67744978 67744061 0.000000e+00 878.0
21 TraesCS3D01G532300 chr4A 85.200 500 43 17 2111 2606 67744024 67743552 4.740000e-133 484.0
22 TraesCS3D01G532300 chr1D 89.091 55 6 0 1012 1066 11782764 11782710 5.660000e-08 69.4
23 TraesCS3D01G532300 chr1A 90.196 51 4 1 1016 1066 13862678 13862629 7.320000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G532300 chr3D 608400134 608403294 3160 False 5838.00 5838 100.0000 1 3161 1 chr3D.!!$F2 3160
1 TraesCS3D01G532300 chr3A 143699433 143700522 1089 True 1197.00 1197 86.7020 1501 2606 1 chr3A.!!$R1 1105
2 TraesCS3D01G532300 chr3A 740885004 740888783 3779 True 1130.75 3437 84.6625 510 3161 4 chr3A.!!$R2 2651
3 TraesCS3D01G532300 chr3B 818275218 818278320 3102 True 1906.00 3193 92.4900 421 3160 2 chr3B.!!$R2 2739
4 TraesCS3D01G532300 chr4D 311188996 311190468 1472 True 1674.00 1674 87.1740 1086 2606 1 chr4D.!!$R1 1520
5 TraesCS3D01G532300 chr1B 532235352 532236824 1472 False 1594.00 1594 86.2540 1086 2605 1 chr1B.!!$F1 1519
6 TraesCS3D01G532300 chr6A 320299389 320300847 1458 False 1323.00 1323 83.1480 1086 2606 1 chr6A.!!$F3 1520
7 TraesCS3D01G532300 chr6A 43118165 43119365 1200 False 1116.00 1116 83.6390 1087 2323 1 chr6A.!!$F2 1236
8 TraesCS3D01G532300 chr6A 43103215 43104406 1191 False 1057.00 1057 82.9210 1087 2323 1 chr6A.!!$F1 1236
9 TraesCS3D01G532300 chrUn 325727627 325728442 815 False 909.00 909 87.0660 1083 1899 1 chrUn.!!$F1 816
10 TraesCS3D01G532300 chrUn 334360600 334361412 812 True 909.00 909 87.1390 1086 1899 1 chrUn.!!$R1 813
11 TraesCS3D01G532300 chr2B 175745678 175746458 780 False 896.00 896 87.3760 1086 1887 1 chr2B.!!$F1 801
12 TraesCS3D01G532300 chr2B 368310695 368311452 757 True 712.00 712 83.6780 1084 1899 1 chr2B.!!$R1 815
13 TraesCS3D01G532300 chr4A 67743552 67744978 1426 True 681.00 878 84.5980 1086 2606 2 chr4A.!!$R1 1520

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
119 120 0.034337 CTTCCTTTTCGTGGACCGGA 59.966 55.0 9.46 0.00 37.11 5.14 F
124 125 0.036765 TTTTCGTGGACCGGATCTGG 60.037 55.0 19.66 19.66 37.11 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2070 2457 1.048601 TGAAAACCGAGCTCCACTCT 58.951 50.000 8.47 0.0 43.85 3.24 R
2182 2578 9.692749 TCTCCAACATCTAATGTCGTAATATTC 57.307 33.333 0.00 0.0 44.07 1.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 2.678934 CGGGTCCTTCCGTCCAGA 60.679 66.667 0.00 0.00 44.60 3.86
39 40 2.711922 CGGGTCCTTCCGTCCAGAG 61.712 68.421 0.00 0.00 44.60 3.35
40 41 2.359967 GGGTCCTTCCGTCCAGAGG 61.360 68.421 0.00 0.00 37.00 3.69
41 42 2.359967 GGTCCTTCCGTCCAGAGGG 61.360 68.421 0.00 0.00 37.69 4.30
42 43 2.683933 TCCTTCCGTCCAGAGGGC 60.684 66.667 1.40 0.00 36.36 5.19
43 44 3.787001 CCTTCCGTCCAGAGGGCC 61.787 72.222 0.00 0.00 36.36 5.80
44 45 2.685380 CTTCCGTCCAGAGGGCCT 60.685 66.667 5.25 5.25 36.36 5.19
45 46 2.203938 TTCCGTCCAGAGGGCCTT 60.204 61.111 7.89 0.00 36.36 4.35
46 47 1.842381 CTTCCGTCCAGAGGGCCTTT 61.842 60.000 7.89 0.00 36.36 3.11
47 48 2.045926 CCGTCCAGAGGGCCTTTG 60.046 66.667 16.89 16.89 0.00 2.77
48 49 2.592993 CCGTCCAGAGGGCCTTTGA 61.593 63.158 24.69 10.79 0.00 2.69
49 50 1.376037 CGTCCAGAGGGCCTTTGAC 60.376 63.158 24.69 20.03 0.00 3.18
50 51 1.831652 CGTCCAGAGGGCCTTTGACT 61.832 60.000 24.69 6.12 0.00 3.41
51 52 0.035915 GTCCAGAGGGCCTTTGACTC 60.036 60.000 24.69 10.71 0.00 3.36
52 53 1.201429 TCCAGAGGGCCTTTGACTCC 61.201 60.000 24.69 1.48 31.70 3.85
53 54 1.492133 CCAGAGGGCCTTTGACTCCA 61.492 60.000 24.69 0.00 31.70 3.86
54 55 0.622665 CAGAGGGCCTTTGACTCCAT 59.377 55.000 18.90 0.00 31.70 3.41
55 56 0.622665 AGAGGGCCTTTGACTCCATG 59.377 55.000 7.89 0.00 31.70 3.66
56 57 0.394899 GAGGGCCTTTGACTCCATGG 60.395 60.000 7.89 4.97 0.00 3.66
57 58 2.054453 GGGCCTTTGACTCCATGGC 61.054 63.158 6.96 0.00 39.77 4.40
58 59 1.304381 GGCCTTTGACTCCATGGCA 60.304 57.895 6.96 0.00 41.19 4.92
59 60 1.318158 GGCCTTTGACTCCATGGCAG 61.318 60.000 6.96 8.24 41.19 4.85
60 61 1.941999 GCCTTTGACTCCATGGCAGC 61.942 60.000 6.96 0.00 40.04 5.25
61 62 1.318158 CCTTTGACTCCATGGCAGCC 61.318 60.000 6.96 3.66 33.66 4.85
62 63 0.609957 CTTTGACTCCATGGCAGCCA 60.610 55.000 18.99 18.99 38.19 4.75
63 64 0.895100 TTTGACTCCATGGCAGCCAC 60.895 55.000 19.10 2.91 35.80 5.01
64 65 1.782201 TTGACTCCATGGCAGCCACT 61.782 55.000 19.10 3.07 35.80 4.00
65 66 1.451028 GACTCCATGGCAGCCACTC 60.451 63.158 19.10 2.64 35.80 3.51
66 67 2.124403 CTCCATGGCAGCCACTCC 60.124 66.667 19.10 0.00 35.80 3.85
67 68 3.711059 CTCCATGGCAGCCACTCCC 62.711 68.421 19.10 0.00 35.80 4.30
68 69 3.736224 CCATGGCAGCCACTCCCT 61.736 66.667 19.10 0.00 35.80 4.20
69 70 2.439701 CATGGCAGCCACTCCCTG 60.440 66.667 19.10 6.98 35.80 4.45
70 71 2.937689 ATGGCAGCCACTCCCTGT 60.938 61.111 19.10 0.00 35.80 4.00
71 72 3.278072 ATGGCAGCCACTCCCTGTG 62.278 63.158 19.10 0.00 45.80 3.66
79 80 3.231736 ACTCCCTGTGACGCCGTT 61.232 61.111 0.00 0.00 0.00 4.44
80 81 1.904865 ACTCCCTGTGACGCCGTTA 60.905 57.895 0.00 0.00 0.00 3.18
81 82 1.255667 ACTCCCTGTGACGCCGTTAT 61.256 55.000 0.00 0.00 0.00 1.89
82 83 0.527817 CTCCCTGTGACGCCGTTATC 60.528 60.000 0.00 0.00 0.00 1.75
83 84 0.968901 TCCCTGTGACGCCGTTATCT 60.969 55.000 0.00 0.00 0.00 1.98
84 85 0.527817 CCCTGTGACGCCGTTATCTC 60.528 60.000 0.00 0.00 0.00 2.75
85 86 0.172578 CCTGTGACGCCGTTATCTCA 59.827 55.000 0.00 0.00 0.00 3.27
86 87 1.269166 CTGTGACGCCGTTATCTCAC 58.731 55.000 0.00 0.00 34.74 3.51
87 88 0.455464 TGTGACGCCGTTATCTCACG 60.455 55.000 0.00 0.00 36.59 4.35
88 89 0.455633 GTGACGCCGTTATCTCACGT 60.456 55.000 0.00 0.00 38.57 4.49
89 90 0.241749 TGACGCCGTTATCTCACGTT 59.758 50.000 0.00 0.00 38.57 3.99
90 91 0.912528 GACGCCGTTATCTCACGTTC 59.087 55.000 0.00 0.00 38.57 3.95
91 92 0.241749 ACGCCGTTATCTCACGTTCA 59.758 50.000 0.00 0.00 38.57 3.18
92 93 0.638746 CGCCGTTATCTCACGTTCAC 59.361 55.000 0.00 0.00 38.57 3.18
93 94 0.638746 GCCGTTATCTCACGTTCACG 59.361 55.000 0.00 0.00 46.33 4.35
94 95 1.265568 CCGTTATCTCACGTTCACGG 58.734 55.000 4.07 0.00 44.95 4.94
95 96 1.265568 CGTTATCTCACGTTCACGGG 58.734 55.000 4.07 0.00 45.65 5.28
96 97 0.997196 GTTATCTCACGTTCACGGGC 59.003 55.000 4.07 0.00 43.59 6.13
97 98 0.108520 TTATCTCACGTTCACGGGCC 60.109 55.000 4.07 0.00 43.59 5.80
98 99 2.274232 TATCTCACGTTCACGGGCCG 62.274 60.000 27.06 27.06 43.59 6.13
108 109 4.280019 ACGGGCCGGCTTCCTTTT 62.280 61.111 31.78 1.72 0.00 2.27
109 110 3.440415 CGGGCCGGCTTCCTTTTC 61.440 66.667 28.56 6.44 0.00 2.29
110 111 3.440415 GGGCCGGCTTCCTTTTCG 61.440 66.667 28.56 0.00 0.00 3.46
111 112 2.671963 GGCCGGCTTCCTTTTCGT 60.672 61.111 28.56 0.00 0.00 3.85
112 113 2.561373 GCCGGCTTCCTTTTCGTG 59.439 61.111 22.15 0.00 0.00 4.35
113 114 2.978018 GCCGGCTTCCTTTTCGTGG 61.978 63.158 22.15 0.00 0.00 4.94
114 115 1.302192 CCGGCTTCCTTTTCGTGGA 60.302 57.895 0.00 0.00 0.00 4.02
115 116 1.574702 CCGGCTTCCTTTTCGTGGAC 61.575 60.000 0.00 0.00 32.65 4.02
116 117 1.574702 CGGCTTCCTTTTCGTGGACC 61.575 60.000 0.00 0.00 32.65 4.46
117 118 1.574702 GGCTTCCTTTTCGTGGACCG 61.575 60.000 0.00 0.00 32.65 4.79
118 119 1.574702 GCTTCCTTTTCGTGGACCGG 61.575 60.000 0.00 0.00 37.11 5.28
119 120 0.034337 CTTCCTTTTCGTGGACCGGA 59.966 55.000 9.46 0.00 37.11 5.14
120 121 0.688487 TTCCTTTTCGTGGACCGGAT 59.312 50.000 9.46 0.00 37.11 4.18
121 122 0.248289 TCCTTTTCGTGGACCGGATC 59.752 55.000 9.46 1.18 37.11 3.36
122 123 0.249398 CCTTTTCGTGGACCGGATCT 59.751 55.000 9.46 0.00 37.11 2.75
123 124 1.359848 CTTTTCGTGGACCGGATCTG 58.640 55.000 9.46 0.00 37.11 2.90
124 125 0.036765 TTTTCGTGGACCGGATCTGG 60.037 55.000 19.66 19.66 37.11 3.86
125 126 2.515996 TTTCGTGGACCGGATCTGGC 62.516 60.000 21.17 12.92 37.11 4.85
126 127 3.461773 CGTGGACCGGATCTGGCT 61.462 66.667 21.17 7.92 0.00 4.75
127 128 2.501610 GTGGACCGGATCTGGCTC 59.498 66.667 21.17 15.92 0.00 4.70
128 129 3.147595 TGGACCGGATCTGGCTCG 61.148 66.667 21.17 0.46 0.00 5.03
130 131 4.593864 GACCGGATCTGGCTCGGC 62.594 72.222 21.17 3.62 46.87 5.54
132 133 4.598894 CCGGATCTGGCTCGGCTG 62.599 72.222 7.89 0.00 37.25 4.85
133 134 4.598894 CGGATCTGGCTCGGCTGG 62.599 72.222 0.00 0.00 0.00 4.85
134 135 4.925861 GGATCTGGCTCGGCTGGC 62.926 72.222 0.00 0.00 0.00 4.85
135 136 3.859414 GATCTGGCTCGGCTGGCT 61.859 66.667 0.00 0.00 0.00 4.75
136 137 4.172512 ATCTGGCTCGGCTGGCTG 62.173 66.667 0.00 0.00 0.00 4.85
140 141 4.925861 GGCTCGGCTGGCTGGATC 62.926 72.222 0.00 0.00 0.00 3.36
141 142 4.166888 GCTCGGCTGGCTGGATCA 62.167 66.667 0.00 0.00 0.00 2.92
142 143 2.827423 CTCGGCTGGCTGGATCAT 59.173 61.111 0.00 0.00 0.00 2.45
143 144 1.597302 CTCGGCTGGCTGGATCATG 60.597 63.158 0.00 0.00 0.00 3.07
144 145 2.593725 CGGCTGGCTGGATCATGG 60.594 66.667 0.00 0.00 0.00 3.66
145 146 2.203451 GGCTGGCTGGATCATGGG 60.203 66.667 0.00 0.00 0.00 4.00
146 147 2.910994 GCTGGCTGGATCATGGGC 60.911 66.667 0.00 0.00 0.00 5.36
147 148 2.593725 CTGGCTGGATCATGGGCG 60.594 66.667 0.00 0.00 0.00 6.13
148 149 4.881440 TGGCTGGATCATGGGCGC 62.881 66.667 0.00 0.00 0.00 6.53
150 151 4.881440 GCTGGATCATGGGCGCCA 62.881 66.667 30.85 15.30 38.19 5.69
151 152 2.903855 CTGGATCATGGGCGCCAC 60.904 66.667 30.85 18.39 35.80 5.01
152 153 4.504596 TGGATCATGGGCGCCACC 62.505 66.667 30.85 19.74 35.80 4.61
153 154 4.504596 GGATCATGGGCGCCACCA 62.505 66.667 30.85 19.02 46.24 4.17
154 155 2.440065 GATCATGGGCGCCACCAA 60.440 61.111 30.85 11.31 45.13 3.67
155 156 2.037049 ATCATGGGCGCCACCAAA 59.963 55.556 30.85 10.94 45.13 3.28
156 157 1.603236 GATCATGGGCGCCACCAAAA 61.603 55.000 30.85 10.57 45.13 2.44
157 158 1.606885 ATCATGGGCGCCACCAAAAG 61.607 55.000 30.85 12.11 45.13 2.27
158 159 2.117206 ATGGGCGCCACCAAAAGA 59.883 55.556 30.85 0.59 45.13 2.52
159 160 1.305213 ATGGGCGCCACCAAAAGAT 60.305 52.632 30.85 3.13 45.13 2.40
160 161 0.904394 ATGGGCGCCACCAAAAGATT 60.904 50.000 30.85 0.00 45.13 2.40
161 162 1.118356 TGGGCGCCACCAAAAGATTT 61.118 50.000 30.85 0.00 42.05 2.17
162 163 0.670239 GGGCGCCACCAAAAGATTTG 60.670 55.000 30.85 0.00 42.05 2.32
163 164 0.316841 GGCGCCACCAAAAGATTTGA 59.683 50.000 24.80 0.00 38.86 2.69
164 165 1.066929 GGCGCCACCAAAAGATTTGAT 60.067 47.619 24.80 0.00 38.86 2.57
165 166 2.612721 GGCGCCACCAAAAGATTTGATT 60.613 45.455 24.80 0.00 38.86 2.57
166 167 3.066380 GCGCCACCAAAAGATTTGATTT 58.934 40.909 0.00 0.00 0.00 2.17
167 168 3.123453 GCGCCACCAAAAGATTTGATTTC 59.877 43.478 0.00 0.00 0.00 2.17
168 169 3.364621 CGCCACCAAAAGATTTGATTTCG 59.635 43.478 4.47 0.40 0.00 3.46
169 170 3.679502 GCCACCAAAAGATTTGATTTCGG 59.320 43.478 4.47 0.00 0.00 4.30
170 171 4.560513 GCCACCAAAAGATTTGATTTCGGA 60.561 41.667 4.47 0.00 0.00 4.55
171 172 5.537188 CCACCAAAAGATTTGATTTCGGAA 58.463 37.500 4.47 0.00 0.00 4.30
172 173 5.405269 CCACCAAAAGATTTGATTTCGGAAC 59.595 40.000 4.47 0.00 0.00 3.62
173 174 5.982516 CACCAAAAGATTTGATTTCGGAACA 59.017 36.000 4.47 0.00 0.00 3.18
174 175 6.144402 CACCAAAAGATTTGATTTCGGAACAG 59.856 38.462 4.47 0.00 0.00 3.16
175 176 5.634859 CCAAAAGATTTGATTTCGGAACAGG 59.365 40.000 4.47 0.00 0.00 4.00
176 177 5.391312 AAAGATTTGATTTCGGAACAGGG 57.609 39.130 0.00 0.00 0.00 4.45
177 178 2.755103 AGATTTGATTTCGGAACAGGGC 59.245 45.455 0.00 0.00 0.00 5.19
178 179 1.988293 TTTGATTTCGGAACAGGGCA 58.012 45.000 0.00 0.00 0.00 5.36
179 180 2.214376 TTGATTTCGGAACAGGGCAT 57.786 45.000 0.00 0.00 0.00 4.40
180 181 1.750193 TGATTTCGGAACAGGGCATC 58.250 50.000 0.00 0.00 0.00 3.91
181 182 1.281867 TGATTTCGGAACAGGGCATCT 59.718 47.619 0.00 0.00 0.00 2.90
191 192 1.964552 CAGGGCATCTGTCTGAATCC 58.035 55.000 0.00 0.00 38.64 3.01
192 193 0.842635 AGGGCATCTGTCTGAATCCC 59.157 55.000 10.05 10.05 39.26 3.85
193 194 0.842635 GGGCATCTGTCTGAATCCCT 59.157 55.000 10.53 0.00 37.34 4.20
194 195 1.476471 GGGCATCTGTCTGAATCCCTG 60.476 57.143 10.53 0.00 37.34 4.45
195 196 1.307097 GCATCTGTCTGAATCCCTGC 58.693 55.000 0.00 0.00 0.00 4.85
196 197 1.134159 GCATCTGTCTGAATCCCTGCT 60.134 52.381 0.00 0.00 0.00 4.24
197 198 2.683152 GCATCTGTCTGAATCCCTGCTT 60.683 50.000 0.00 0.00 0.00 3.91
198 199 3.618351 CATCTGTCTGAATCCCTGCTTT 58.382 45.455 0.00 0.00 0.00 3.51
199 200 3.795688 TCTGTCTGAATCCCTGCTTTT 57.204 42.857 0.00 0.00 0.00 2.27
200 201 4.104383 TCTGTCTGAATCCCTGCTTTTT 57.896 40.909 0.00 0.00 0.00 1.94
221 222 4.830826 TTCTTCTTTCTTTCTTTCGGCC 57.169 40.909 0.00 0.00 0.00 6.13
222 223 3.815809 TCTTCTTTCTTTCTTTCGGCCA 58.184 40.909 2.24 0.00 0.00 5.36
223 224 4.204012 TCTTCTTTCTTTCTTTCGGCCAA 58.796 39.130 2.24 0.00 0.00 4.52
224 225 3.982576 TCTTTCTTTCTTTCGGCCAAC 57.017 42.857 2.24 0.00 0.00 3.77
225 226 3.551846 TCTTTCTTTCTTTCGGCCAACT 58.448 40.909 2.24 0.00 0.00 3.16
226 227 3.315191 TCTTTCTTTCTTTCGGCCAACTG 59.685 43.478 2.24 0.00 0.00 3.16
227 228 1.604604 TCTTTCTTTCGGCCAACTGG 58.395 50.000 2.24 0.00 38.53 4.00
228 229 1.133915 TCTTTCTTTCGGCCAACTGGT 60.134 47.619 2.24 0.00 37.57 4.00
229 230 1.001378 CTTTCTTTCGGCCAACTGGTG 60.001 52.381 2.24 0.00 37.57 4.17
230 231 0.181587 TTCTTTCGGCCAACTGGTGA 59.818 50.000 2.24 0.00 37.57 4.02
231 232 0.534203 TCTTTCGGCCAACTGGTGAC 60.534 55.000 2.24 0.00 37.57 3.67
232 233 0.817634 CTTTCGGCCAACTGGTGACA 60.818 55.000 2.24 0.00 37.57 3.58
242 243 2.046988 TGGTGACAGATGCCGCTG 60.047 61.111 1.74 1.74 41.63 5.18
243 244 3.503363 GGTGACAGATGCCGCTGC 61.503 66.667 3.10 0.00 39.51 5.25
244 245 2.435586 GTGACAGATGCCGCTGCT 60.436 61.111 0.70 0.00 39.51 4.24
245 246 2.435410 TGACAGATGCCGCTGCTG 60.435 61.111 0.70 10.32 39.51 4.41
246 247 3.200593 GACAGATGCCGCTGCTGG 61.201 66.667 14.66 1.93 39.51 4.85
247 248 4.790962 ACAGATGCCGCTGCTGGG 62.791 66.667 14.66 0.25 39.51 4.45
248 249 4.478371 CAGATGCCGCTGCTGGGA 62.478 66.667 9.32 9.35 38.71 4.37
249 250 3.720601 AGATGCCGCTGCTGGGAA 61.721 61.111 9.32 0.00 38.71 3.97
250 251 2.517875 GATGCCGCTGCTGGGAAT 60.518 61.111 9.32 0.46 38.71 3.01
251 252 2.043652 ATGCCGCTGCTGGGAATT 60.044 55.556 9.32 0.00 38.71 2.17
252 253 2.345880 GATGCCGCTGCTGGGAATTG 62.346 60.000 9.32 0.00 38.71 2.32
253 254 3.830192 GCCGCTGCTGGGAATTGG 61.830 66.667 9.32 0.00 33.53 3.16
254 255 3.142838 CCGCTGCTGGGAATTGGG 61.143 66.667 9.32 0.00 0.00 4.12
255 256 2.361610 CGCTGCTGGGAATTGGGT 60.362 61.111 1.02 0.00 0.00 4.51
256 257 2.409870 CGCTGCTGGGAATTGGGTC 61.410 63.158 1.02 0.00 0.00 4.46
257 258 1.000396 GCTGCTGGGAATTGGGTCT 60.000 57.895 0.00 0.00 0.00 3.85
258 259 1.034292 GCTGCTGGGAATTGGGTCTC 61.034 60.000 0.00 0.00 0.00 3.36
259 260 0.394899 CTGCTGGGAATTGGGTCTCC 60.395 60.000 0.00 0.00 0.00 3.71
260 261 0.846427 TGCTGGGAATTGGGTCTCCT 60.846 55.000 0.00 0.00 31.88 3.69
261 262 0.106967 GCTGGGAATTGGGTCTCCTC 60.107 60.000 0.00 0.00 31.88 3.71
262 263 1.289160 CTGGGAATTGGGTCTCCTCA 58.711 55.000 0.00 0.00 31.88 3.86
263 264 1.211457 CTGGGAATTGGGTCTCCTCAG 59.789 57.143 0.00 0.00 31.88 3.35
264 265 0.548510 GGGAATTGGGTCTCCTCAGG 59.451 60.000 0.00 0.00 31.88 3.86
265 266 0.106967 GGAATTGGGTCTCCTCAGGC 60.107 60.000 0.00 0.00 0.00 4.85
266 267 0.462759 GAATTGGGTCTCCTCAGGCG 60.463 60.000 0.00 0.00 0.00 5.52
267 268 2.543067 AATTGGGTCTCCTCAGGCGC 62.543 60.000 0.00 0.00 37.70 6.53
268 269 4.704103 TGGGTCTCCTCAGGCGCT 62.704 66.667 7.64 0.00 38.04 5.92
269 270 4.154347 GGGTCTCCTCAGGCGCTG 62.154 72.222 7.64 3.67 34.35 5.18
270 271 4.828925 GGTCTCCTCAGGCGCTGC 62.829 72.222 7.64 0.00 0.00 5.25
271 272 4.074526 GTCTCCTCAGGCGCTGCA 62.075 66.667 7.64 0.00 0.00 4.41
272 273 4.074526 TCTCCTCAGGCGCTGCAC 62.075 66.667 7.64 0.00 0.00 4.57
273 274 4.383861 CTCCTCAGGCGCTGCACA 62.384 66.667 7.64 0.00 0.00 4.57
274 275 4.687215 TCCTCAGGCGCTGCACAC 62.687 66.667 7.64 0.00 0.00 3.82
276 277 4.994471 CTCAGGCGCTGCACACCA 62.994 66.667 7.64 0.00 0.00 4.17
277 278 4.560743 TCAGGCGCTGCACACCAA 62.561 61.111 7.64 0.00 0.00 3.67
278 279 3.594775 CAGGCGCTGCACACCAAA 61.595 61.111 7.64 0.00 0.00 3.28
279 280 3.289834 AGGCGCTGCACACCAAAG 61.290 61.111 7.64 0.00 0.00 2.77
281 282 3.969802 GCGCTGCACACCAAAGCT 61.970 61.111 0.00 0.00 34.72 3.74
282 283 2.050714 CGCTGCACACCAAAGCTG 60.051 61.111 0.00 0.00 34.72 4.24
291 292 2.437897 CCAAAGCTGGCCACTCCT 59.562 61.111 0.00 0.00 35.39 3.69
292 293 1.228675 CCAAAGCTGGCCACTCCTT 60.229 57.895 0.00 1.49 35.39 3.36
293 294 0.829182 CCAAAGCTGGCCACTCCTTT 60.829 55.000 0.00 8.42 35.39 3.11
294 295 1.043022 CAAAGCTGGCCACTCCTTTT 58.957 50.000 15.18 4.58 35.26 2.27
295 296 1.413812 CAAAGCTGGCCACTCCTTTTT 59.586 47.619 15.18 3.14 35.26 1.94
296 297 1.332195 AAGCTGGCCACTCCTTTTTC 58.668 50.000 0.00 0.00 35.26 2.29
297 298 0.540597 AGCTGGCCACTCCTTTTTCC 60.541 55.000 0.00 0.00 35.26 3.13
298 299 0.827507 GCTGGCCACTCCTTTTTCCA 60.828 55.000 0.00 0.00 35.26 3.53
299 300 1.928868 CTGGCCACTCCTTTTTCCAT 58.071 50.000 0.00 0.00 35.26 3.41
300 301 1.547372 CTGGCCACTCCTTTTTCCATG 59.453 52.381 0.00 0.00 35.26 3.66
301 302 0.897621 GGCCACTCCTTTTTCCATGG 59.102 55.000 4.97 4.97 0.00 3.66
302 303 0.247460 GCCACTCCTTTTTCCATGGC 59.753 55.000 6.96 0.00 45.26 4.40
303 304 1.928868 CCACTCCTTTTTCCATGGCT 58.071 50.000 6.96 0.00 0.00 4.75
304 305 1.821136 CCACTCCTTTTTCCATGGCTC 59.179 52.381 6.96 0.00 0.00 4.70
305 306 2.517959 CACTCCTTTTTCCATGGCTCA 58.482 47.619 6.96 0.00 0.00 4.26
306 307 2.892852 CACTCCTTTTTCCATGGCTCAA 59.107 45.455 6.96 0.00 0.00 3.02
307 308 3.321682 CACTCCTTTTTCCATGGCTCAAA 59.678 43.478 6.96 3.12 0.00 2.69
308 309 3.321968 ACTCCTTTTTCCATGGCTCAAAC 59.678 43.478 6.96 0.00 0.00 2.93
309 310 3.303938 TCCTTTTTCCATGGCTCAAACA 58.696 40.909 6.96 0.00 0.00 2.83
310 311 3.903090 TCCTTTTTCCATGGCTCAAACAT 59.097 39.130 6.96 0.00 0.00 2.71
311 312 4.347583 TCCTTTTTCCATGGCTCAAACATT 59.652 37.500 6.96 0.00 0.00 2.71
312 313 4.453136 CCTTTTTCCATGGCTCAAACATTG 59.547 41.667 6.96 0.00 0.00 2.82
313 314 3.681593 TTTCCATGGCTCAAACATTGG 57.318 42.857 6.96 0.00 0.00 3.16
314 315 1.559368 TCCATGGCTCAAACATTGGG 58.441 50.000 6.96 0.00 0.00 4.12
315 316 1.203162 TCCATGGCTCAAACATTGGGT 60.203 47.619 6.96 0.00 32.32 4.51
316 317 1.066716 CCATGGCTCAAACATTGGGTG 60.067 52.381 0.00 0.00 32.32 4.61
317 318 0.609662 ATGGCTCAAACATTGGGTGC 59.390 50.000 0.00 0.00 32.32 5.01
318 319 0.469705 TGGCTCAAACATTGGGTGCT 60.470 50.000 0.00 0.00 32.32 4.40
319 320 0.681175 GGCTCAAACATTGGGTGCTT 59.319 50.000 0.00 0.00 32.32 3.91
320 321 1.892474 GGCTCAAACATTGGGTGCTTA 59.108 47.619 0.00 0.00 32.32 3.09
321 322 2.298729 GGCTCAAACATTGGGTGCTTAA 59.701 45.455 0.00 0.00 32.32 1.85
322 323 3.055891 GGCTCAAACATTGGGTGCTTAAT 60.056 43.478 0.00 0.00 32.32 1.40
323 324 4.563374 GGCTCAAACATTGGGTGCTTAATT 60.563 41.667 0.00 0.00 32.32 1.40
324 325 5.337169 GGCTCAAACATTGGGTGCTTAATTA 60.337 40.000 0.00 0.00 32.32 1.40
325 326 6.340522 GCTCAAACATTGGGTGCTTAATTAT 58.659 36.000 0.00 0.00 32.32 1.28
326 327 6.256321 GCTCAAACATTGGGTGCTTAATTATG 59.744 38.462 0.00 0.00 32.32 1.90
327 328 6.105333 TCAAACATTGGGTGCTTAATTATGC 58.895 36.000 14.72 14.72 0.00 3.14
328 329 5.937975 AACATTGGGTGCTTAATTATGCT 57.062 34.783 20.32 0.95 0.00 3.79
329 330 5.266733 ACATTGGGTGCTTAATTATGCTG 57.733 39.130 20.32 13.07 0.00 4.41
330 331 4.711355 ACATTGGGTGCTTAATTATGCTGT 59.289 37.500 20.32 13.58 0.00 4.40
331 332 4.981806 TTGGGTGCTTAATTATGCTGTC 57.018 40.909 20.32 12.32 0.00 3.51
332 333 4.235079 TGGGTGCTTAATTATGCTGTCT 57.765 40.909 20.32 0.00 0.00 3.41
333 334 4.599041 TGGGTGCTTAATTATGCTGTCTT 58.401 39.130 20.32 0.00 0.00 3.01
334 335 4.398988 TGGGTGCTTAATTATGCTGTCTTG 59.601 41.667 20.32 0.00 0.00 3.02
335 336 4.640201 GGGTGCTTAATTATGCTGTCTTGA 59.360 41.667 20.32 0.34 0.00 3.02
336 337 5.125417 GGGTGCTTAATTATGCTGTCTTGAA 59.875 40.000 20.32 0.00 0.00 2.69
337 338 6.350110 GGGTGCTTAATTATGCTGTCTTGAAA 60.350 38.462 20.32 0.00 0.00 2.69
338 339 7.260603 GGTGCTTAATTATGCTGTCTTGAAAT 58.739 34.615 20.32 0.00 0.00 2.17
339 340 7.761249 GGTGCTTAATTATGCTGTCTTGAAATT 59.239 33.333 20.32 0.00 0.00 1.82
340 341 9.143631 GTGCTTAATTATGCTGTCTTGAAATTT 57.856 29.630 20.32 0.00 0.00 1.82
350 351 8.984891 TGCTGTCTTGAAATTTATTATTGGTG 57.015 30.769 0.00 0.00 0.00 4.17
351 352 8.034215 TGCTGTCTTGAAATTTATTATTGGTGG 58.966 33.333 0.00 0.00 0.00 4.61
352 353 8.250332 GCTGTCTTGAAATTTATTATTGGTGGA 58.750 33.333 0.00 0.00 0.00 4.02
366 367 2.952273 GTGGAAAACCACGCAACAC 58.048 52.632 3.65 0.00 0.00 3.32
382 383 5.862924 GCAACACGATACATATATTGGCT 57.137 39.130 0.00 0.00 0.00 4.75
383 384 5.858475 GCAACACGATACATATATTGGCTC 58.142 41.667 0.00 0.00 0.00 4.70
384 385 5.639506 GCAACACGATACATATATTGGCTCT 59.360 40.000 0.00 0.00 0.00 4.09
385 386 6.183360 GCAACACGATACATATATTGGCTCTC 60.183 42.308 0.00 0.00 0.00 3.20
386 387 5.967088 ACACGATACATATATTGGCTCTCC 58.033 41.667 0.00 0.00 0.00 3.71
387 388 5.105310 ACACGATACATATATTGGCTCTCCC 60.105 44.000 0.00 0.00 0.00 4.30
388 389 5.127845 CACGATACATATATTGGCTCTCCCT 59.872 44.000 0.00 0.00 0.00 4.20
389 390 5.361285 ACGATACATATATTGGCTCTCCCTC 59.639 44.000 0.00 0.00 0.00 4.30
390 391 5.596361 CGATACATATATTGGCTCTCCCTCT 59.404 44.000 0.00 0.00 0.00 3.69
391 392 6.773200 CGATACATATATTGGCTCTCCCTCTA 59.227 42.308 0.00 0.00 0.00 2.43
392 393 7.255312 CGATACATATATTGGCTCTCCCTCTAC 60.255 44.444 0.00 0.00 0.00 2.59
393 394 4.707448 ACATATATTGGCTCTCCCTCTACG 59.293 45.833 0.00 0.00 0.00 3.51
394 395 2.750141 TATTGGCTCTCCCTCTACGT 57.250 50.000 0.00 0.00 0.00 3.57
395 396 1.867363 ATTGGCTCTCCCTCTACGTT 58.133 50.000 0.00 0.00 0.00 3.99
396 397 0.895530 TTGGCTCTCCCTCTACGTTG 59.104 55.000 0.00 0.00 0.00 4.10
397 398 0.039180 TGGCTCTCCCTCTACGTTGA 59.961 55.000 0.00 0.00 0.00 3.18
398 399 0.456628 GGCTCTCCCTCTACGTTGAC 59.543 60.000 0.00 0.00 0.00 3.18
399 400 1.174783 GCTCTCCCTCTACGTTGACA 58.825 55.000 0.00 0.00 0.00 3.58
400 401 1.135344 GCTCTCCCTCTACGTTGACAC 60.135 57.143 0.00 0.00 0.00 3.67
401 402 1.473278 CTCTCCCTCTACGTTGACACC 59.527 57.143 0.00 0.00 0.00 4.16
402 403 1.075050 TCTCCCTCTACGTTGACACCT 59.925 52.381 0.00 0.00 0.00 4.00
403 404 2.306805 TCTCCCTCTACGTTGACACCTA 59.693 50.000 0.00 0.00 0.00 3.08
404 405 3.053842 TCTCCCTCTACGTTGACACCTAT 60.054 47.826 0.00 0.00 0.00 2.57
405 406 3.700038 CTCCCTCTACGTTGACACCTATT 59.300 47.826 0.00 0.00 0.00 1.73
406 407 3.698040 TCCCTCTACGTTGACACCTATTC 59.302 47.826 0.00 0.00 0.00 1.75
407 408 3.446161 CCCTCTACGTTGACACCTATTCA 59.554 47.826 0.00 0.00 0.00 2.57
408 409 4.081862 CCCTCTACGTTGACACCTATTCAA 60.082 45.833 0.00 0.00 0.00 2.69
409 410 5.475719 CCTCTACGTTGACACCTATTCAAA 58.524 41.667 0.00 0.00 34.78 2.69
410 411 5.929992 CCTCTACGTTGACACCTATTCAAAA 59.070 40.000 0.00 0.00 34.78 2.44
411 412 6.128634 CCTCTACGTTGACACCTATTCAAAAC 60.129 42.308 0.00 0.00 34.78 2.43
412 413 6.282167 TCTACGTTGACACCTATTCAAAACA 58.718 36.000 0.00 0.00 34.78 2.83
413 414 6.932400 TCTACGTTGACACCTATTCAAAACAT 59.068 34.615 0.00 0.00 34.78 2.71
414 415 6.385649 ACGTTGACACCTATTCAAAACATT 57.614 33.333 0.00 0.00 34.78 2.71
415 416 6.801575 ACGTTGACACCTATTCAAAACATTT 58.198 32.000 0.00 0.00 34.78 2.32
416 417 6.695278 ACGTTGACACCTATTCAAAACATTTG 59.305 34.615 0.00 0.00 34.78 2.32
417 418 6.695278 CGTTGACACCTATTCAAAACATTTGT 59.305 34.615 3.06 0.00 34.78 2.83
418 419 7.096640 CGTTGACACCTATTCAAAACATTTGTC 60.097 37.037 3.06 0.00 34.78 3.18
419 420 7.340122 TGACACCTATTCAAAACATTTGTCA 57.660 32.000 0.00 0.00 38.73 3.58
432 433 3.745975 ACATTTGTCATACACACCTCACG 59.254 43.478 0.00 0.00 33.41 4.35
442 443 2.263077 CACACCTCACGATCAACTAGC 58.737 52.381 0.00 0.00 0.00 3.42
446 447 0.249073 CTCACGATCAACTAGCCCCG 60.249 60.000 0.00 0.00 0.00 5.73
478 479 3.070015 CACCCAATGTTCTTCCTTGCTTT 59.930 43.478 0.00 0.00 0.00 3.51
479 480 3.711190 ACCCAATGTTCTTCCTTGCTTTT 59.289 39.130 0.00 0.00 0.00 2.27
497 501 4.505742 GCTTTTCCTCTTTCTCCTTCTCCA 60.506 45.833 0.00 0.00 0.00 3.86
505 509 2.678934 TCCTTCTCCACGTCCCGG 60.679 66.667 0.00 0.00 0.00 5.73
506 510 4.452733 CCTTCTCCACGTCCCGGC 62.453 72.222 0.00 0.00 0.00 6.13
531 535 1.594862 CCTCCGAATCAAACTCGATGC 59.405 52.381 0.00 0.00 38.61 3.91
579 583 8.421002 CCATCCGTTTTAATTTCCCATTAGAAT 58.579 33.333 0.00 0.00 0.00 2.40
626 630 7.434897 TGGTTGAAAAAGAAACGAAGAATCATG 59.565 33.333 0.00 0.00 0.00 3.07
633 637 9.918630 AAAAGAAACGAAGAATCATGAATCAAT 57.081 25.926 13.19 1.42 0.00 2.57
634 638 9.565213 AAAGAAACGAAGAATCATGAATCAATC 57.435 29.630 13.19 9.42 0.00 2.67
635 639 8.272545 AGAAACGAAGAATCATGAATCAATCA 57.727 30.769 13.19 0.00 43.67 2.57
636 640 8.733458 AGAAACGAAGAATCATGAATCAATCAA 58.267 29.630 13.19 0.00 42.54 2.57
712 716 0.820871 ATCAACGGCAGAGAGGAGAC 59.179 55.000 0.00 0.00 0.00 3.36
715 719 1.587933 AACGGCAGAGAGGAGACGAC 61.588 60.000 0.00 0.00 0.00 4.34
717 721 1.587043 CGGCAGAGAGGAGACGACAA 61.587 60.000 0.00 0.00 0.00 3.18
719 723 0.172352 GCAGAGAGGAGACGACAAGG 59.828 60.000 0.00 0.00 0.00 3.61
720 724 1.827681 CAGAGAGGAGACGACAAGGA 58.172 55.000 0.00 0.00 0.00 3.36
722 726 2.163412 CAGAGAGGAGACGACAAGGAAG 59.837 54.545 0.00 0.00 0.00 3.46
723 727 2.164338 GAGAGGAGACGACAAGGAAGT 58.836 52.381 0.00 0.00 0.00 3.01
889 916 4.693915 CCCCAACCTCCTCCCCCA 62.694 72.222 0.00 0.00 0.00 4.96
891 918 2.386935 CCCAACCTCCTCCCCCATC 61.387 68.421 0.00 0.00 0.00 3.51
957 1255 2.433970 AGCTCCTTCTTATCCAGCTCAC 59.566 50.000 0.00 0.00 35.46 3.51
965 1263 1.621992 TATCCAGCTCACTCGGATCC 58.378 55.000 5.83 0.00 40.12 3.36
996 1294 3.500642 GCCCGCGCCTTTTCTCTC 61.501 66.667 0.00 0.00 0.00 3.20
1410 1761 2.690881 TTCCTCATGGGGTCCGGG 60.691 66.667 12.53 0.00 35.33 5.73
1852 2232 2.725203 CTTTGCCGTCGGGAGGTTCA 62.725 60.000 14.38 0.00 34.06 3.18
2238 2640 3.701241 TGTTTGCTTCCGTTTGATGTTC 58.299 40.909 0.00 0.00 0.00 3.18
2270 2675 3.966979 AGTCAGCTGAGAGATGAAGAGA 58.033 45.455 18.89 0.00 42.81 3.10
2368 2782 3.429085 CAGTTTGCGTATTCAAGATGGC 58.571 45.455 0.00 0.00 0.00 4.40
2415 2829 6.035843 TCATTCAGCAAGACAAGTTTTGTTC 58.964 36.000 5.53 0.00 45.52 3.18
2480 2894 3.005155 GGCAGCACTCAATTGTTTCTTCT 59.995 43.478 5.13 0.00 0.00 2.85
2508 2922 3.545124 TTGCTCAATGCGACGGGGT 62.545 57.895 0.00 0.00 46.63 4.95
2577 2991 6.195983 GCAAAGATTCAATAAAGCATCACTCG 59.804 38.462 0.00 0.00 0.00 4.18
2616 3030 8.827177 TCTTCAATTGGATATATCGTTGTACC 57.173 34.615 5.42 2.20 0.00 3.34
2624 3038 5.515626 GGATATATCGTTGTACCGATCAAGC 59.484 44.000 9.83 3.88 43.74 4.01
2844 3266 7.864882 CAGAAAAGAAAGATCCAAGAACCTTTC 59.135 37.037 0.00 0.00 42.70 2.62
2924 3347 7.867403 TGTTTTCAGCACCTCAATTATTTCTTC 59.133 33.333 0.00 0.00 0.00 2.87
2931 3381 5.067023 CACCTCAATTATTTCTTCAGGGCTC 59.933 44.000 0.00 0.00 0.00 4.70
2960 3410 2.005370 ACCCACGACCTGTTAGAAGA 57.995 50.000 0.00 0.00 0.00 2.87
2961 3411 2.322658 ACCCACGACCTGTTAGAAGAA 58.677 47.619 0.00 0.00 0.00 2.52
2965 3415 3.244112 CCACGACCTGTTAGAAGAAGGTT 60.244 47.826 0.00 0.00 44.42 3.50
2967 3417 3.991367 CGACCTGTTAGAAGAAGGTTGT 58.009 45.455 0.00 0.00 44.42 3.32
2968 3418 5.130292 CGACCTGTTAGAAGAAGGTTGTA 57.870 43.478 0.00 0.00 44.42 2.41
2969 3419 5.162075 CGACCTGTTAGAAGAAGGTTGTAG 58.838 45.833 0.00 0.00 44.42 2.74
3019 3472 9.582431 AACATCATTCAAGATATTTTCTGCTTG 57.418 29.630 0.00 0.00 39.17 4.01
3153 3619 5.843673 TGTCTTATTCAACAAAGCCAACA 57.156 34.783 0.00 0.00 0.00 3.33
3160 3626 2.159254 TCAACAAAGCCAACAAGCTGAC 60.159 45.455 0.00 0.00 44.11 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.359967 CCTCTGGACGGAAGGACCC 61.360 68.421 0.00 0.00 34.64 4.46
23 24 2.359967 CCCTCTGGACGGAAGGACC 61.360 68.421 0.00 0.00 0.00 4.46
24 25 3.020237 GCCCTCTGGACGGAAGGAC 62.020 68.421 0.00 0.00 0.00 3.85
25 26 2.683933 GCCCTCTGGACGGAAGGA 60.684 66.667 0.00 0.00 0.00 3.36
26 27 3.787001 GGCCCTCTGGACGGAAGG 61.787 72.222 0.00 0.00 0.00 3.46
32 33 0.035915 GAGTCAAAGGCCCTCTGGAC 60.036 60.000 0.00 0.26 41.67 4.02
33 34 1.201429 GGAGTCAAAGGCCCTCTGGA 61.201 60.000 0.00 0.00 0.00 3.86
34 35 1.301293 GGAGTCAAAGGCCCTCTGG 59.699 63.158 0.00 0.00 0.00 3.86
35 36 0.622665 ATGGAGTCAAAGGCCCTCTG 59.377 55.000 0.00 0.00 0.00 3.35
36 37 0.622665 CATGGAGTCAAAGGCCCTCT 59.377 55.000 0.00 0.00 0.00 3.69
37 38 0.394899 CCATGGAGTCAAAGGCCCTC 60.395 60.000 5.56 0.00 0.00 4.30
38 39 1.693640 CCATGGAGTCAAAGGCCCT 59.306 57.895 5.56 0.00 0.00 5.19
39 40 2.054453 GCCATGGAGTCAAAGGCCC 61.054 63.158 18.40 0.00 40.24 5.80
40 41 1.304381 TGCCATGGAGTCAAAGGCC 60.304 57.895 18.40 0.00 43.30 5.19
41 42 1.941999 GCTGCCATGGAGTCAAAGGC 61.942 60.000 18.40 6.83 43.83 4.35
42 43 1.318158 GGCTGCCATGGAGTCAAAGG 61.318 60.000 18.40 0.00 0.00 3.11
43 44 0.609957 TGGCTGCCATGGAGTCAAAG 60.610 55.000 19.30 3.35 0.00 2.77
44 45 0.895100 GTGGCTGCCATGGAGTCAAA 60.895 55.000 26.22 0.00 35.28 2.69
45 46 1.303561 GTGGCTGCCATGGAGTCAA 60.304 57.895 26.22 0.00 35.28 3.18
46 47 2.189191 GAGTGGCTGCCATGGAGTCA 62.189 60.000 26.22 14.85 35.28 3.41
47 48 1.451028 GAGTGGCTGCCATGGAGTC 60.451 63.158 26.22 12.24 35.28 3.36
48 49 2.673523 GAGTGGCTGCCATGGAGT 59.326 61.111 26.22 3.92 35.28 3.85
49 50 2.124403 GGAGTGGCTGCCATGGAG 60.124 66.667 26.22 11.30 35.28 3.86
50 51 3.731728 GGGAGTGGCTGCCATGGA 61.732 66.667 26.22 0.00 41.77 3.41
51 52 3.736224 AGGGAGTGGCTGCCATGG 61.736 66.667 26.22 7.63 44.71 3.66
52 53 2.439701 CAGGGAGTGGCTGCCATG 60.440 66.667 26.22 14.76 44.71 3.66
53 54 2.937689 ACAGGGAGTGGCTGCCAT 60.938 61.111 26.22 13.77 44.71 4.40
54 55 3.957586 CACAGGGAGTGGCTGCCA 61.958 66.667 19.30 19.30 44.71 4.92
62 63 1.255667 ATAACGGCGTCACAGGGAGT 61.256 55.000 15.17 0.00 0.00 3.85
63 64 0.527817 GATAACGGCGTCACAGGGAG 60.528 60.000 15.17 0.00 0.00 4.30
64 65 0.968901 AGATAACGGCGTCACAGGGA 60.969 55.000 15.17 0.00 0.00 4.20
65 66 0.527817 GAGATAACGGCGTCACAGGG 60.528 60.000 15.17 0.00 0.00 4.45
66 67 0.172578 TGAGATAACGGCGTCACAGG 59.827 55.000 15.17 0.00 0.00 4.00
67 68 1.269166 GTGAGATAACGGCGTCACAG 58.731 55.000 15.17 0.00 39.33 3.66
68 69 0.455464 CGTGAGATAACGGCGTCACA 60.455 55.000 22.85 10.53 39.46 3.58
69 70 2.275703 CGTGAGATAACGGCGTCAC 58.724 57.895 15.17 15.76 39.89 3.67
70 71 4.777781 CGTGAGATAACGGCGTCA 57.222 55.556 15.17 0.00 39.89 4.35
77 78 0.997196 GCCCGTGAACGTGAGATAAC 59.003 55.000 1.75 0.00 37.74 1.89
78 79 0.108520 GGCCCGTGAACGTGAGATAA 60.109 55.000 0.00 0.00 37.74 1.75
79 80 1.514087 GGCCCGTGAACGTGAGATA 59.486 57.895 0.00 0.00 37.74 1.98
80 81 2.264794 GGCCCGTGAACGTGAGAT 59.735 61.111 0.00 0.00 37.74 2.75
81 82 4.351938 CGGCCCGTGAACGTGAGA 62.352 66.667 0.00 0.00 37.74 3.27
91 92 4.280019 AAAAGGAAGCCGGCCCGT 62.280 61.111 26.15 14.15 0.00 5.28
92 93 3.440415 GAAAAGGAAGCCGGCCCG 61.440 66.667 26.15 0.00 0.00 6.13
93 94 3.440415 CGAAAAGGAAGCCGGCCC 61.440 66.667 26.15 19.13 0.00 5.80
94 95 2.671963 ACGAAAAGGAAGCCGGCC 60.672 61.111 26.15 8.83 0.00 6.13
95 96 2.561373 CACGAAAAGGAAGCCGGC 59.439 61.111 21.89 21.89 0.00 6.13
96 97 1.302192 TCCACGAAAAGGAAGCCGG 60.302 57.895 0.00 0.00 30.71 6.13
97 98 1.574702 GGTCCACGAAAAGGAAGCCG 61.575 60.000 0.00 0.00 36.80 5.52
98 99 2.254471 GGTCCACGAAAAGGAAGCC 58.746 57.895 0.00 0.00 36.80 4.35
109 110 3.432051 GAGCCAGATCCGGTCCACG 62.432 68.421 0.00 0.00 43.80 4.94
110 111 2.501610 GAGCCAGATCCGGTCCAC 59.498 66.667 0.00 0.00 0.00 4.02
111 112 3.147595 CGAGCCAGATCCGGTCCA 61.148 66.667 0.00 0.00 0.00 4.02
112 113 3.917760 CCGAGCCAGATCCGGTCC 61.918 72.222 0.00 0.00 38.55 4.46
113 114 4.593864 GCCGAGCCAGATCCGGTC 62.594 72.222 0.00 0.00 44.63 4.79
115 116 4.598894 CAGCCGAGCCAGATCCGG 62.599 72.222 0.00 0.00 45.51 5.14
116 117 4.598894 CCAGCCGAGCCAGATCCG 62.599 72.222 0.00 0.00 0.00 4.18
117 118 4.925861 GCCAGCCGAGCCAGATCC 62.926 72.222 0.00 0.00 0.00 3.36
118 119 3.859414 AGCCAGCCGAGCCAGATC 61.859 66.667 0.00 0.00 0.00 2.75
119 120 4.172512 CAGCCAGCCGAGCCAGAT 62.173 66.667 0.00 0.00 0.00 2.90
123 124 4.925861 GATCCAGCCAGCCGAGCC 62.926 72.222 0.00 0.00 0.00 4.70
124 125 3.472943 ATGATCCAGCCAGCCGAGC 62.473 63.158 0.00 0.00 0.00 5.03
125 126 1.597302 CATGATCCAGCCAGCCGAG 60.597 63.158 0.00 0.00 0.00 4.63
126 127 2.507452 CATGATCCAGCCAGCCGA 59.493 61.111 0.00 0.00 0.00 5.54
127 128 2.593725 CCATGATCCAGCCAGCCG 60.594 66.667 0.00 0.00 0.00 5.52
128 129 2.203451 CCCATGATCCAGCCAGCC 60.203 66.667 0.00 0.00 0.00 4.85
129 130 2.910994 GCCCATGATCCAGCCAGC 60.911 66.667 0.00 0.00 0.00 4.85
130 131 2.593725 CGCCCATGATCCAGCCAG 60.594 66.667 0.00 0.00 0.00 4.85
131 132 4.881440 GCGCCCATGATCCAGCCA 62.881 66.667 0.00 0.00 0.00 4.75
133 134 4.881440 TGGCGCCCATGATCCAGC 62.881 66.667 26.77 0.00 0.00 4.85
134 135 2.903855 GTGGCGCCCATGATCCAG 60.904 66.667 26.77 0.00 35.28 3.86
135 136 4.504596 GGTGGCGCCCATGATCCA 62.505 66.667 26.77 0.00 35.28 3.41
136 137 4.504596 TGGTGGCGCCCATGATCC 62.505 66.667 26.77 16.23 35.28 3.36
137 138 1.603236 TTTTGGTGGCGCCCATGATC 61.603 55.000 26.77 5.76 35.28 2.92
138 139 1.606885 CTTTTGGTGGCGCCCATGAT 61.607 55.000 26.77 0.00 35.28 2.45
139 140 2.203552 TTTTGGTGGCGCCCATGA 60.204 55.556 26.77 0.59 35.28 3.07
140 141 1.606885 ATCTTTTGGTGGCGCCCATG 61.607 55.000 26.77 8.97 35.28 3.66
141 142 0.904394 AATCTTTTGGTGGCGCCCAT 60.904 50.000 26.77 0.63 35.28 4.00
142 143 1.118356 AAATCTTTTGGTGGCGCCCA 61.118 50.000 26.77 13.42 36.04 5.36
143 144 0.670239 CAAATCTTTTGGTGGCGCCC 60.670 55.000 26.77 15.53 36.04 6.13
144 145 0.316841 TCAAATCTTTTGGTGGCGCC 59.683 50.000 22.73 22.73 37.90 6.53
145 146 2.368655 ATCAAATCTTTTGGTGGCGC 57.631 45.000 0.00 0.00 0.00 6.53
146 147 3.364621 CGAAATCAAATCTTTTGGTGGCG 59.635 43.478 0.55 0.00 0.00 5.69
147 148 3.679502 CCGAAATCAAATCTTTTGGTGGC 59.320 43.478 0.55 0.00 33.94 5.01
148 149 5.132897 TCCGAAATCAAATCTTTTGGTGG 57.867 39.130 0.55 0.00 38.04 4.61
149 150 5.982516 TGTTCCGAAATCAAATCTTTTGGTG 59.017 36.000 0.55 0.00 38.04 4.17
150 151 6.155475 TGTTCCGAAATCAAATCTTTTGGT 57.845 33.333 0.55 0.00 38.04 3.67
151 152 5.634859 CCTGTTCCGAAATCAAATCTTTTGG 59.365 40.000 0.55 0.00 38.15 3.28
152 153 5.634859 CCCTGTTCCGAAATCAAATCTTTTG 59.365 40.000 0.00 0.00 0.00 2.44
153 154 5.783111 CCCTGTTCCGAAATCAAATCTTTT 58.217 37.500 0.00 0.00 0.00 2.27
154 155 4.321974 GCCCTGTTCCGAAATCAAATCTTT 60.322 41.667 0.00 0.00 0.00 2.52
155 156 3.193479 GCCCTGTTCCGAAATCAAATCTT 59.807 43.478 0.00 0.00 0.00 2.40
156 157 2.755103 GCCCTGTTCCGAAATCAAATCT 59.245 45.455 0.00 0.00 0.00 2.40
157 158 2.491693 TGCCCTGTTCCGAAATCAAATC 59.508 45.455 0.00 0.00 0.00 2.17
158 159 2.524306 TGCCCTGTTCCGAAATCAAAT 58.476 42.857 0.00 0.00 0.00 2.32
159 160 1.988293 TGCCCTGTTCCGAAATCAAA 58.012 45.000 0.00 0.00 0.00 2.69
160 161 2.091541 GATGCCCTGTTCCGAAATCAA 58.908 47.619 0.00 0.00 0.00 2.57
161 162 1.281867 AGATGCCCTGTTCCGAAATCA 59.718 47.619 0.00 0.00 0.00 2.57
162 163 1.672881 CAGATGCCCTGTTCCGAAATC 59.327 52.381 0.00 0.00 38.10 2.17
163 164 1.755179 CAGATGCCCTGTTCCGAAAT 58.245 50.000 0.00 0.00 38.10 2.17
164 165 3.248043 CAGATGCCCTGTTCCGAAA 57.752 52.632 0.00 0.00 38.10 3.46
172 173 3.819109 AGGGATTCAGACAGATGCCCTG 61.819 54.545 0.00 2.10 44.29 4.45
173 174 0.842635 GGGATTCAGACAGATGCCCT 59.157 55.000 0.00 0.00 37.14 5.19
174 175 0.842635 AGGGATTCAGACAGATGCCC 59.157 55.000 0.00 0.00 39.21 5.36
175 176 1.964552 CAGGGATTCAGACAGATGCC 58.035 55.000 0.00 0.00 0.00 4.40
176 177 1.134159 AGCAGGGATTCAGACAGATGC 60.134 52.381 0.00 0.00 0.00 3.91
177 178 3.278668 AAGCAGGGATTCAGACAGATG 57.721 47.619 0.00 0.00 0.00 2.90
178 179 4.313020 AAAAGCAGGGATTCAGACAGAT 57.687 40.909 0.00 0.00 0.00 2.90
179 180 3.795688 AAAAGCAGGGATTCAGACAGA 57.204 42.857 0.00 0.00 0.00 3.41
197 198 6.040247 GGCCGAAAGAAAGAAAGAAGAAAAA 58.960 36.000 0.00 0.00 0.00 1.94
198 199 5.126384 TGGCCGAAAGAAAGAAAGAAGAAAA 59.874 36.000 0.00 0.00 0.00 2.29
199 200 4.642885 TGGCCGAAAGAAAGAAAGAAGAAA 59.357 37.500 0.00 0.00 0.00 2.52
200 201 4.204012 TGGCCGAAAGAAAGAAAGAAGAA 58.796 39.130 0.00 0.00 0.00 2.52
201 202 3.815809 TGGCCGAAAGAAAGAAAGAAGA 58.184 40.909 0.00 0.00 0.00 2.87
202 203 4.036852 AGTTGGCCGAAAGAAAGAAAGAAG 59.963 41.667 0.00 0.00 0.00 2.85
203 204 3.951680 AGTTGGCCGAAAGAAAGAAAGAA 59.048 39.130 0.00 0.00 0.00 2.52
204 205 3.315191 CAGTTGGCCGAAAGAAAGAAAGA 59.685 43.478 0.00 0.00 0.00 2.52
205 206 3.550842 CCAGTTGGCCGAAAGAAAGAAAG 60.551 47.826 0.00 0.00 0.00 2.62
206 207 2.360801 CCAGTTGGCCGAAAGAAAGAAA 59.639 45.455 0.00 0.00 0.00 2.52
207 208 1.953686 CCAGTTGGCCGAAAGAAAGAA 59.046 47.619 0.00 0.00 0.00 2.52
208 209 1.133915 ACCAGTTGGCCGAAAGAAAGA 60.134 47.619 0.00 0.00 39.32 2.52
209 210 1.001378 CACCAGTTGGCCGAAAGAAAG 60.001 52.381 0.00 0.00 39.32 2.62
210 211 1.028905 CACCAGTTGGCCGAAAGAAA 58.971 50.000 0.00 0.00 39.32 2.52
211 212 0.181587 TCACCAGTTGGCCGAAAGAA 59.818 50.000 0.00 0.00 39.32 2.52
212 213 0.534203 GTCACCAGTTGGCCGAAAGA 60.534 55.000 0.00 0.00 39.32 2.52
213 214 0.817634 TGTCACCAGTTGGCCGAAAG 60.818 55.000 0.00 0.00 39.32 2.62
214 215 0.817634 CTGTCACCAGTTGGCCGAAA 60.818 55.000 0.00 0.00 39.32 3.46
215 216 1.227823 CTGTCACCAGTTGGCCGAA 60.228 57.895 0.00 0.00 39.32 4.30
216 217 1.480212 ATCTGTCACCAGTTGGCCGA 61.480 55.000 0.00 0.00 39.82 5.54
217 218 1.003355 ATCTGTCACCAGTTGGCCG 60.003 57.895 0.00 0.00 39.82 6.13
218 219 1.589716 GCATCTGTCACCAGTTGGCC 61.590 60.000 0.00 0.00 38.36 5.36
219 220 1.878775 GCATCTGTCACCAGTTGGC 59.121 57.895 0.00 0.00 38.36 4.52
220 221 1.300971 CGGCATCTGTCACCAGTTGG 61.301 60.000 0.00 0.00 38.36 3.77
221 222 1.915614 GCGGCATCTGTCACCAGTTG 61.916 60.000 0.00 0.00 40.08 3.16
222 223 1.672356 GCGGCATCTGTCACCAGTT 60.672 57.895 0.00 0.00 39.82 3.16
223 224 2.046892 GCGGCATCTGTCACCAGT 60.047 61.111 0.00 0.00 39.82 4.00
224 225 2.104859 CAGCGGCATCTGTCACCAG 61.105 63.158 1.45 0.00 40.25 4.00
225 226 2.046988 CAGCGGCATCTGTCACCA 60.047 61.111 1.45 0.00 0.00 4.17
226 227 3.503363 GCAGCGGCATCTGTCACC 61.503 66.667 3.18 0.00 40.72 4.02
227 228 2.435586 AGCAGCGGCATCTGTCAC 60.436 61.111 12.44 0.00 44.61 3.67
228 229 2.435410 CAGCAGCGGCATCTGTCA 60.435 61.111 12.44 0.00 44.61 3.58
229 230 3.200593 CCAGCAGCGGCATCTGTC 61.201 66.667 12.44 0.32 44.61 3.51
230 231 4.790962 CCCAGCAGCGGCATCTGT 62.791 66.667 12.44 0.00 44.61 3.41
231 232 3.982316 TTCCCAGCAGCGGCATCTG 62.982 63.158 12.44 8.57 44.61 2.90
232 233 2.563013 AATTCCCAGCAGCGGCATCT 62.563 55.000 12.44 0.00 44.61 2.90
233 234 2.123428 AATTCCCAGCAGCGGCATC 61.123 57.895 12.44 0.00 44.61 3.91
234 235 2.043652 AATTCCCAGCAGCGGCAT 60.044 55.556 12.44 0.00 44.61 4.40
235 236 3.063704 CAATTCCCAGCAGCGGCA 61.064 61.111 12.44 0.00 44.61 5.69
236 237 3.830192 CCAATTCCCAGCAGCGGC 61.830 66.667 0.00 0.00 41.61 6.53
237 238 3.142838 CCCAATTCCCAGCAGCGG 61.143 66.667 0.00 0.00 0.00 5.52
238 239 2.361610 ACCCAATTCCCAGCAGCG 60.362 61.111 0.00 0.00 0.00 5.18
239 240 1.000396 AGACCCAATTCCCAGCAGC 60.000 57.895 0.00 0.00 0.00 5.25
240 241 0.394899 GGAGACCCAATTCCCAGCAG 60.395 60.000 0.00 0.00 0.00 4.24
241 242 0.846427 AGGAGACCCAATTCCCAGCA 60.846 55.000 0.00 0.00 33.83 4.41
242 243 0.106967 GAGGAGACCCAATTCCCAGC 60.107 60.000 0.00 0.00 33.83 4.85
243 244 1.211457 CTGAGGAGACCCAATTCCCAG 59.789 57.143 0.00 0.00 33.83 4.45
244 245 1.289160 CTGAGGAGACCCAATTCCCA 58.711 55.000 0.00 0.00 33.83 4.37
245 246 0.548510 CCTGAGGAGACCCAATTCCC 59.451 60.000 0.00 0.00 33.83 3.97
246 247 0.106967 GCCTGAGGAGACCCAATTCC 60.107 60.000 0.65 0.00 33.88 3.01
247 248 0.462759 CGCCTGAGGAGACCCAATTC 60.463 60.000 0.65 0.00 33.88 2.17
248 249 1.604378 CGCCTGAGGAGACCCAATT 59.396 57.895 0.65 0.00 33.88 2.32
249 250 3.036429 GCGCCTGAGGAGACCCAAT 62.036 63.158 6.36 0.00 33.88 3.16
250 251 3.706373 GCGCCTGAGGAGACCCAA 61.706 66.667 6.36 0.00 33.88 4.12
251 252 4.704103 AGCGCCTGAGGAGACCCA 62.704 66.667 6.36 0.00 33.88 4.51
252 253 4.154347 CAGCGCCTGAGGAGACCC 62.154 72.222 6.36 0.00 32.44 4.46
253 254 4.828925 GCAGCGCCTGAGGAGACC 62.829 72.222 6.36 0.00 32.44 3.85
254 255 4.074526 TGCAGCGCCTGAGGAGAC 62.075 66.667 6.36 0.00 32.44 3.36
255 256 4.074526 GTGCAGCGCCTGAGGAGA 62.075 66.667 6.36 0.00 32.44 3.71
256 257 4.383861 TGTGCAGCGCCTGAGGAG 62.384 66.667 0.65 0.00 32.44 3.69
257 258 4.687215 GTGTGCAGCGCCTGAGGA 62.687 66.667 0.65 0.00 32.44 3.71
264 265 3.969802 AGCTTTGGTGTGCAGCGC 61.970 61.111 0.00 0.00 38.66 5.92
265 266 2.050714 CAGCTTTGGTGTGCAGCG 60.051 61.111 0.00 0.00 38.66 5.18
266 267 2.337532 CCAGCTTTGGTGTGCAGC 59.662 61.111 0.00 0.00 0.00 5.25
267 268 2.337532 GCCAGCTTTGGTGTGCAG 59.662 61.111 0.00 0.00 31.35 4.41
268 269 3.225798 GGCCAGCTTTGGTGTGCA 61.226 61.111 0.00 0.00 32.13 4.57
269 270 3.225798 TGGCCAGCTTTGGTGTGC 61.226 61.111 0.00 0.00 0.00 4.57
270 271 1.799258 GAGTGGCCAGCTTTGGTGTG 61.799 60.000 5.11 0.00 0.00 3.82
271 272 1.529244 GAGTGGCCAGCTTTGGTGT 60.529 57.895 5.11 0.00 0.00 4.16
272 273 2.270986 GGAGTGGCCAGCTTTGGTG 61.271 63.158 5.11 0.00 36.34 4.17
273 274 2.011617 AAGGAGTGGCCAGCTTTGGT 62.012 55.000 5.11 0.00 40.02 3.67
274 275 0.829182 AAAGGAGTGGCCAGCTTTGG 60.829 55.000 5.11 0.00 40.02 3.28
275 276 1.043022 AAAAGGAGTGGCCAGCTTTG 58.957 50.000 5.11 0.00 40.02 2.77
276 277 1.688735 GAAAAAGGAGTGGCCAGCTTT 59.311 47.619 5.11 0.40 40.02 3.51
277 278 1.332195 GAAAAAGGAGTGGCCAGCTT 58.668 50.000 5.11 0.00 40.02 3.74
278 279 0.540597 GGAAAAAGGAGTGGCCAGCT 60.541 55.000 5.11 6.62 40.02 4.24
279 280 0.827507 TGGAAAAAGGAGTGGCCAGC 60.828 55.000 5.11 0.00 40.02 4.85
280 281 1.547372 CATGGAAAAAGGAGTGGCCAG 59.453 52.381 5.11 0.00 40.02 4.85
281 282 1.631405 CATGGAAAAAGGAGTGGCCA 58.369 50.000 0.00 0.00 40.02 5.36
282 283 0.897621 CCATGGAAAAAGGAGTGGCC 59.102 55.000 5.56 0.00 0.00 5.36
283 284 0.247460 GCCATGGAAAAAGGAGTGGC 59.753 55.000 18.40 0.00 44.37 5.01
284 285 1.821136 GAGCCATGGAAAAAGGAGTGG 59.179 52.381 18.40 0.00 0.00 4.00
285 286 2.517959 TGAGCCATGGAAAAAGGAGTG 58.482 47.619 18.40 0.00 0.00 3.51
286 287 2.978156 TGAGCCATGGAAAAAGGAGT 57.022 45.000 18.40 0.00 0.00 3.85
287 288 3.321682 TGTTTGAGCCATGGAAAAAGGAG 59.678 43.478 18.40 0.00 0.00 3.69
288 289 3.303938 TGTTTGAGCCATGGAAAAAGGA 58.696 40.909 18.40 0.00 0.00 3.36
289 290 3.749665 TGTTTGAGCCATGGAAAAAGG 57.250 42.857 18.40 0.00 0.00 3.11
290 291 4.453136 CCAATGTTTGAGCCATGGAAAAAG 59.547 41.667 18.40 0.73 0.00 2.27
291 292 4.387598 CCAATGTTTGAGCCATGGAAAAA 58.612 39.130 18.40 9.34 0.00 1.94
292 293 3.244491 CCCAATGTTTGAGCCATGGAAAA 60.244 43.478 18.40 9.72 0.00 2.29
293 294 2.302445 CCCAATGTTTGAGCCATGGAAA 59.698 45.455 18.40 4.21 0.00 3.13
294 295 1.901159 CCCAATGTTTGAGCCATGGAA 59.099 47.619 18.40 0.00 0.00 3.53
295 296 1.203162 ACCCAATGTTTGAGCCATGGA 60.203 47.619 18.40 0.00 0.00 3.41
296 297 1.066716 CACCCAATGTTTGAGCCATGG 60.067 52.381 7.63 7.63 0.00 3.66
297 298 1.673626 GCACCCAATGTTTGAGCCATG 60.674 52.381 0.00 0.00 0.00 3.66
298 299 0.609662 GCACCCAATGTTTGAGCCAT 59.390 50.000 0.00 0.00 0.00 4.40
299 300 0.469705 AGCACCCAATGTTTGAGCCA 60.470 50.000 0.00 0.00 0.00 4.75
300 301 0.681175 AAGCACCCAATGTTTGAGCC 59.319 50.000 0.00 0.00 29.28 4.70
301 302 3.658757 TTAAGCACCCAATGTTTGAGC 57.341 42.857 0.00 0.00 33.24 4.26
302 303 6.256321 GCATAATTAAGCACCCAATGTTTGAG 59.744 38.462 7.78 0.00 33.24 3.02
303 304 6.070881 AGCATAATTAAGCACCCAATGTTTGA 60.071 34.615 14.58 0.00 33.24 2.69
304 305 6.036300 CAGCATAATTAAGCACCCAATGTTTG 59.964 38.462 14.58 0.00 33.24 2.93
305 306 6.108015 CAGCATAATTAAGCACCCAATGTTT 58.892 36.000 14.58 0.00 35.64 2.83
306 307 5.187576 ACAGCATAATTAAGCACCCAATGTT 59.812 36.000 14.58 0.00 0.00 2.71
307 308 4.711355 ACAGCATAATTAAGCACCCAATGT 59.289 37.500 14.58 6.36 0.00 2.71
308 309 5.068198 AGACAGCATAATTAAGCACCCAATG 59.932 40.000 14.58 5.79 0.00 2.82
309 310 5.203528 AGACAGCATAATTAAGCACCCAAT 58.796 37.500 14.58 0.00 0.00 3.16
310 311 4.599041 AGACAGCATAATTAAGCACCCAA 58.401 39.130 14.58 0.00 0.00 4.12
311 312 4.235079 AGACAGCATAATTAAGCACCCA 57.765 40.909 14.58 0.00 0.00 4.51
312 313 4.640201 TCAAGACAGCATAATTAAGCACCC 59.360 41.667 14.58 3.44 0.00 4.61
313 314 5.818136 TCAAGACAGCATAATTAAGCACC 57.182 39.130 14.58 3.75 0.00 5.01
314 315 8.693542 AATTTCAAGACAGCATAATTAAGCAC 57.306 30.769 14.58 6.08 0.00 4.40
324 325 9.590451 CACCAATAATAAATTTCAAGACAGCAT 57.410 29.630 0.00 0.00 0.00 3.79
325 326 8.034215 CCACCAATAATAAATTTCAAGACAGCA 58.966 33.333 0.00 0.00 0.00 4.41
326 327 8.250332 TCCACCAATAATAAATTTCAAGACAGC 58.750 33.333 0.00 0.00 0.00 4.40
349 350 1.025113 TCGTGTTGCGTGGTTTTCCA 61.025 50.000 0.00 0.00 43.11 3.53
350 351 0.309612 ATCGTGTTGCGTGGTTTTCC 59.690 50.000 0.00 0.00 42.13 3.13
351 352 2.032722 TGTATCGTGTTGCGTGGTTTTC 60.033 45.455 0.00 0.00 42.13 2.29
352 353 1.941294 TGTATCGTGTTGCGTGGTTTT 59.059 42.857 0.00 0.00 42.13 2.43
353 354 1.584175 TGTATCGTGTTGCGTGGTTT 58.416 45.000 0.00 0.00 42.13 3.27
354 355 1.803334 ATGTATCGTGTTGCGTGGTT 58.197 45.000 0.00 0.00 42.13 3.67
355 356 2.658373 TATGTATCGTGTTGCGTGGT 57.342 45.000 0.00 0.00 42.13 4.16
356 357 5.389411 CCAATATATGTATCGTGTTGCGTGG 60.389 44.000 0.00 0.00 42.13 4.94
357 358 5.608146 CCAATATATGTATCGTGTTGCGTG 58.392 41.667 0.00 0.00 42.13 5.34
358 359 4.151689 GCCAATATATGTATCGTGTTGCGT 59.848 41.667 0.00 0.00 42.13 5.24
359 360 4.388773 AGCCAATATATGTATCGTGTTGCG 59.611 41.667 0.00 0.00 43.01 4.85
360 361 5.639506 AGAGCCAATATATGTATCGTGTTGC 59.360 40.000 0.00 0.00 0.00 4.17
361 362 6.311445 GGAGAGCCAATATATGTATCGTGTTG 59.689 42.308 0.00 0.00 0.00 3.33
362 363 6.398918 GGAGAGCCAATATATGTATCGTGTT 58.601 40.000 0.00 0.00 0.00 3.32
363 364 5.105310 GGGAGAGCCAATATATGTATCGTGT 60.105 44.000 0.00 0.00 35.15 4.49
364 365 5.127845 AGGGAGAGCCAATATATGTATCGTG 59.872 44.000 0.00 0.00 35.15 4.35
365 366 5.273208 AGGGAGAGCCAATATATGTATCGT 58.727 41.667 0.00 0.00 35.15 3.73
366 367 5.596361 AGAGGGAGAGCCAATATATGTATCG 59.404 44.000 0.00 0.00 35.15 2.92
367 368 7.255312 CGTAGAGGGAGAGCCAATATATGTATC 60.255 44.444 0.00 0.00 35.15 2.24
368 369 6.547880 CGTAGAGGGAGAGCCAATATATGTAT 59.452 42.308 0.00 0.00 35.15 2.29
369 370 5.886474 CGTAGAGGGAGAGCCAATATATGTA 59.114 44.000 0.00 0.00 35.15 2.29
370 371 4.707448 CGTAGAGGGAGAGCCAATATATGT 59.293 45.833 0.00 0.00 35.15 2.29
371 372 4.707448 ACGTAGAGGGAGAGCCAATATATG 59.293 45.833 0.00 0.00 35.15 1.78
372 373 4.936802 ACGTAGAGGGAGAGCCAATATAT 58.063 43.478 0.00 0.00 35.15 0.86
373 374 4.383931 ACGTAGAGGGAGAGCCAATATA 57.616 45.455 0.00 0.00 35.15 0.86
374 375 3.246416 ACGTAGAGGGAGAGCCAATAT 57.754 47.619 0.00 0.00 35.15 1.28
375 376 2.693591 CAACGTAGAGGGAGAGCCAATA 59.306 50.000 0.00 0.00 35.15 1.90
376 377 1.482593 CAACGTAGAGGGAGAGCCAAT 59.517 52.381 0.00 0.00 35.15 3.16
377 378 0.895530 CAACGTAGAGGGAGAGCCAA 59.104 55.000 0.00 0.00 35.15 4.52
378 379 0.039180 TCAACGTAGAGGGAGAGCCA 59.961 55.000 0.00 0.00 35.15 4.75
379 380 0.456628 GTCAACGTAGAGGGAGAGCC 59.543 60.000 0.00 0.00 0.00 4.70
380 381 1.135344 GTGTCAACGTAGAGGGAGAGC 60.135 57.143 0.00 0.00 0.00 4.09
381 382 1.473278 GGTGTCAACGTAGAGGGAGAG 59.527 57.143 0.00 0.00 0.00 3.20
382 383 1.075050 AGGTGTCAACGTAGAGGGAGA 59.925 52.381 0.00 0.00 0.00 3.71
383 384 1.546961 AGGTGTCAACGTAGAGGGAG 58.453 55.000 0.00 0.00 0.00 4.30
384 385 2.885135 TAGGTGTCAACGTAGAGGGA 57.115 50.000 0.00 0.00 0.00 4.20
385 386 3.446161 TGAATAGGTGTCAACGTAGAGGG 59.554 47.826 0.00 0.00 30.63 4.30
386 387 4.713824 TGAATAGGTGTCAACGTAGAGG 57.286 45.455 0.00 0.00 30.63 3.69
387 388 6.422701 TGTTTTGAATAGGTGTCAACGTAGAG 59.577 38.462 0.00 0.00 34.78 2.43
388 389 6.282167 TGTTTTGAATAGGTGTCAACGTAGA 58.718 36.000 0.00 0.00 34.78 2.59
389 390 6.533819 TGTTTTGAATAGGTGTCAACGTAG 57.466 37.500 0.00 0.00 34.78 3.51
390 391 7.499321 AATGTTTTGAATAGGTGTCAACGTA 57.501 32.000 0.00 0.00 34.78 3.57
391 392 6.385649 AATGTTTTGAATAGGTGTCAACGT 57.614 33.333 0.00 0.00 34.78 3.99
392 393 6.695278 ACAAATGTTTTGAATAGGTGTCAACG 59.305 34.615 6.96 0.00 34.78 4.10
393 394 7.704472 TGACAAATGTTTTGAATAGGTGTCAAC 59.296 33.333 6.96 0.00 39.72 3.18
394 395 7.776107 TGACAAATGTTTTGAATAGGTGTCAA 58.224 30.769 6.96 0.00 39.72 3.18
395 396 7.340122 TGACAAATGTTTTGAATAGGTGTCA 57.660 32.000 6.96 0.00 40.21 3.58
396 397 9.341899 GTATGACAAATGTTTTGAATAGGTGTC 57.658 33.333 6.96 0.00 34.76 3.67
397 398 8.855110 TGTATGACAAATGTTTTGAATAGGTGT 58.145 29.630 6.96 0.00 0.00 4.16
398 399 9.128107 GTGTATGACAAATGTTTTGAATAGGTG 57.872 33.333 6.96 0.00 0.00 4.00
399 400 8.855110 TGTGTATGACAAATGTTTTGAATAGGT 58.145 29.630 6.96 0.00 0.00 3.08
400 401 9.128107 GTGTGTATGACAAATGTTTTGAATAGG 57.872 33.333 6.96 0.00 35.91 2.57
401 402 9.128107 GGTGTGTATGACAAATGTTTTGAATAG 57.872 33.333 6.96 0.00 35.91 1.73
402 403 8.855110 AGGTGTGTATGACAAATGTTTTGAATA 58.145 29.630 6.96 2.67 35.91 1.75
403 404 7.725251 AGGTGTGTATGACAAATGTTTTGAAT 58.275 30.769 6.96 3.46 35.91 2.57
404 405 7.106439 AGGTGTGTATGACAAATGTTTTGAA 57.894 32.000 6.96 0.00 35.91 2.69
405 406 6.319911 TGAGGTGTGTATGACAAATGTTTTGA 59.680 34.615 6.96 0.00 35.91 2.69
406 407 6.417635 GTGAGGTGTGTATGACAAATGTTTTG 59.582 38.462 0.00 0.00 35.91 2.44
407 408 6.503524 GTGAGGTGTGTATGACAAATGTTTT 58.496 36.000 0.00 0.00 35.91 2.43
408 409 5.277779 CGTGAGGTGTGTATGACAAATGTTT 60.278 40.000 0.00 0.00 35.91 2.83
409 410 4.213270 CGTGAGGTGTGTATGACAAATGTT 59.787 41.667 0.00 0.00 35.91 2.71
410 411 3.745975 CGTGAGGTGTGTATGACAAATGT 59.254 43.478 0.00 0.00 35.91 2.71
411 412 3.993736 TCGTGAGGTGTGTATGACAAATG 59.006 43.478 0.00 0.00 35.91 2.32
412 413 4.265904 TCGTGAGGTGTGTATGACAAAT 57.734 40.909 0.00 0.00 35.91 2.32
413 414 3.737032 TCGTGAGGTGTGTATGACAAA 57.263 42.857 0.00 0.00 35.91 2.83
414 415 3.257127 TGATCGTGAGGTGTGTATGACAA 59.743 43.478 0.00 0.00 35.91 3.18
415 416 2.823154 TGATCGTGAGGTGTGTATGACA 59.177 45.455 0.00 0.00 0.00 3.58
416 417 3.503827 TGATCGTGAGGTGTGTATGAC 57.496 47.619 0.00 0.00 0.00 3.06
417 418 3.509967 AGTTGATCGTGAGGTGTGTATGA 59.490 43.478 0.00 0.00 0.00 2.15
418 419 3.849911 AGTTGATCGTGAGGTGTGTATG 58.150 45.455 0.00 0.00 0.00 2.39
419 420 4.440250 GCTAGTTGATCGTGAGGTGTGTAT 60.440 45.833 0.00 0.00 0.00 2.29
432 433 2.280186 CCGCGGGGCTAGTTGATC 60.280 66.667 20.10 0.00 0.00 2.92
452 453 1.212751 GAAGAACATTGGGTGGCGC 59.787 57.895 0.00 0.00 0.00 6.53
458 459 4.309933 GAAAAGCAAGGAAGAACATTGGG 58.690 43.478 0.00 0.00 40.12 4.12
478 479 2.563179 CGTGGAGAAGGAGAAAGAGGAA 59.437 50.000 0.00 0.00 0.00 3.36
479 480 2.171840 CGTGGAGAAGGAGAAAGAGGA 58.828 52.381 0.00 0.00 0.00 3.71
505 509 0.748367 GTTTGATTCGGAGGAGGGGC 60.748 60.000 0.00 0.00 0.00 5.80
506 510 0.912486 AGTTTGATTCGGAGGAGGGG 59.088 55.000 0.00 0.00 0.00 4.79
531 535 2.655364 CGCTACATCGGCCGTCTG 60.655 66.667 27.15 24.57 0.00 3.51
633 637 8.605746 CATTCTGCTTTTTGTTTTCTTGATTGA 58.394 29.630 0.00 0.00 0.00 2.57
634 638 7.853929 CCATTCTGCTTTTTGTTTTCTTGATTG 59.146 33.333 0.00 0.00 0.00 2.67
635 639 7.467675 GCCATTCTGCTTTTTGTTTTCTTGATT 60.468 33.333 0.00 0.00 0.00 2.57
636 640 6.017687 GCCATTCTGCTTTTTGTTTTCTTGAT 60.018 34.615 0.00 0.00 0.00 2.57
688 692 1.967066 CCTCTCTGCCGTTGATATCCT 59.033 52.381 0.00 0.00 0.00 3.24
692 696 2.025155 GTCTCCTCTCTGCCGTTGATA 58.975 52.381 0.00 0.00 0.00 2.15
712 716 1.801178 GCTTCCTTCACTTCCTTGTCG 59.199 52.381 0.00 0.00 0.00 4.35
715 719 1.801178 GACGCTTCCTTCACTTCCTTG 59.199 52.381 0.00 0.00 0.00 3.61
717 721 0.321996 GGACGCTTCCTTCACTTCCT 59.678 55.000 1.07 0.00 39.13 3.36
719 723 0.673956 GGGGACGCTTCCTTCACTTC 60.674 60.000 9.40 0.00 42.38 3.01
720 724 1.375326 GGGGACGCTTCCTTCACTT 59.625 57.895 9.40 0.00 42.38 3.16
910 937 4.880426 GATCGGGGCAGGGAGGGA 62.880 72.222 0.00 0.00 0.00 4.20
913 940 3.866582 GTGGATCGGGGCAGGGAG 61.867 72.222 0.00 0.00 0.00 4.30
932 959 0.839946 TGGATAAGAAGGAGCTGGGC 59.160 55.000 0.00 0.00 0.00 5.36
1017 1315 4.814294 CACCAGTAGGACGCCGGC 62.814 72.222 19.07 19.07 38.69 6.13
1018 1316 4.814294 GCACCAGTAGGACGCCGG 62.814 72.222 0.00 0.00 38.69 6.13
2070 2457 1.048601 TGAAAACCGAGCTCCACTCT 58.951 50.000 8.47 0.00 43.85 3.24
2182 2578 9.692749 TCTCCAACATCTAATGTCGTAATATTC 57.307 33.333 0.00 0.00 44.07 1.75
2255 2660 7.436080 GCTCTACAAATTCTCTTCATCTCTCAG 59.564 40.741 0.00 0.00 0.00 3.35
2264 2669 4.928661 TTGCGCTCTACAAATTCTCTTC 57.071 40.909 9.73 0.00 0.00 2.87
2368 2782 2.629617 ACTCCAAAATGCAACAGGAAGG 59.370 45.455 0.00 0.00 0.00 3.46
2415 2829 3.075148 CCAGATGCTTGCATCTATCAGG 58.925 50.000 30.05 23.94 39.69 3.86
2480 2894 4.035558 GTCGCATTGAGCAAGATGGAATTA 59.964 41.667 0.00 0.00 46.13 1.40
2491 2905 3.545124 AACCCCGTCGCATTGAGCA 62.545 57.895 0.00 0.00 46.13 4.26
2508 2922 4.710324 AGTCATGGTTACAAAGGACGAAA 58.290 39.130 0.00 0.00 33.87 3.46
2577 2991 8.218338 TCCAATTGAAGAGCAGAAAATATCTC 57.782 34.615 7.12 0.00 35.73 2.75
2616 3030 2.099141 TGAAAGGGTGAGCTTGATCG 57.901 50.000 0.00 0.00 0.00 3.69
2624 3038 4.829492 AGAAAACAAGGATGAAAGGGTGAG 59.171 41.667 0.00 0.00 0.00 3.51
2787 3206 8.218338 ACAGATTTGATGAAGATATTCCACAC 57.782 34.615 0.00 0.00 0.00 3.82
2792 3213 9.727627 GGAACAACAGATTTGATGAAGATATTC 57.272 33.333 0.24 0.00 32.02 1.75
2844 3266 5.158101 CAGCTCTGCTTCACATAAATCAG 57.842 43.478 0.00 0.00 36.40 2.90
2924 3347 1.369625 GGTACAATCAACGAGCCCTG 58.630 55.000 0.00 0.00 0.00 4.45
2931 3381 1.073177 GGTCGTGGGTACAATCAACG 58.927 55.000 0.00 0.00 0.00 4.10
2960 3410 1.457346 GCTGCAGCATCTACAACCTT 58.543 50.000 33.36 0.00 41.59 3.50
2961 3411 3.165606 GCTGCAGCATCTACAACCT 57.834 52.632 33.36 0.00 41.59 3.50
3036 3489 8.627208 ACAATCATATCCAACTAAATAGCTGG 57.373 34.615 0.00 3.89 40.16 4.85
3066 3531 2.770802 AGGATGAGAAGGTGACCATGAG 59.229 50.000 3.63 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.