Multiple sequence alignment - TraesCS3D01G532100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G532100 chr3D 100.000 8762 0 0 1 8762 608073580 608064819 0.000000e+00 16181.0
1 TraesCS3D01G532100 chr3A 98.164 3431 53 3 4988 8415 740352714 740349291 0.000000e+00 5978.0
2 TraesCS3D01G532100 chr3A 94.811 2428 88 11 2413 4828 740355122 740352721 0.000000e+00 3751.0
3 TraesCS3D01G532100 chr3A 88.120 1431 79 36 572 1963 740356920 740355542 0.000000e+00 1616.0
4 TraesCS3D01G532100 chr3A 90.507 611 41 10 8159 8762 63069145 63069745 0.000000e+00 791.0
5 TraesCS3D01G532100 chr3A 82.828 297 33 9 2136 2427 740355501 740355218 5.250000e-62 250.0
6 TraesCS3D01G532100 chr3A 89.362 141 12 1 2054 2191 740355524 740355384 3.250000e-39 174.0
7 TraesCS3D01G532100 chr3A 88.696 115 9 2 1823 1933 740356131 740356017 4.270000e-28 137.0
8 TraesCS3D01G532100 chr3A 77.160 162 30 5 5 163 124666073 124666230 4.360000e-13 87.9
9 TraesCS3D01G532100 chr3B 93.889 3813 171 28 4987 8762 817824332 817820545 0.000000e+00 5694.0
10 TraesCS3D01G532100 chr3B 97.348 1848 45 3 2983 4828 817826183 817824338 0.000000e+00 3138.0
11 TraesCS3D01G532100 chr3B 86.224 1597 109 54 8 1565 817829113 817827589 0.000000e+00 1628.0
12 TraesCS3D01G532100 chr3B 86.828 1450 97 50 8 1423 817836774 817835385 0.000000e+00 1533.0
13 TraesCS3D01G532100 chr3B 91.694 602 39 7 8163 8762 370553799 370553207 0.000000e+00 824.0
14 TraesCS3D01G532100 chr3B 85.057 522 35 14 2413 2920 817826677 817826185 7.900000e-135 492.0
15 TraesCS3D01G532100 chr3B 88.614 404 19 10 1556 1934 817827560 817827159 4.790000e-127 466.0
16 TraesCS3D01G532100 chr3B 82.192 292 38 8 2137 2427 817826974 817826696 1.140000e-58 239.0
17 TraesCS3D01G532100 chr3B 82.836 268 22 11 1931 2198 817827099 817826856 1.480000e-52 219.0
18 TraesCS3D01G532100 chr3B 89.565 115 8 2 1823 1933 817827784 817827670 9.170000e-30 143.0
19 TraesCS3D01G532100 chr3B 86.567 67 9 0 4908 4974 79471842 79471908 3.390000e-09 75.0
20 TraesCS3D01G532100 chr2A 91.708 603 40 6 8161 8762 599426406 599425813 0.000000e+00 828.0
21 TraesCS3D01G532100 chr7B 91.181 601 43 7 8163 8762 587653387 587653978 0.000000e+00 808.0
22 TraesCS3D01G532100 chr7B 90.849 601 45 6 8163 8762 241774264 241773673 0.000000e+00 797.0
23 TraesCS3D01G532100 chr7A 90.909 605 44 7 8159 8762 702619782 702619188 0.000000e+00 802.0
24 TraesCS3D01G532100 chr5A 91.015 601 42 7 8163 8762 237958424 237959013 0.000000e+00 800.0
25 TraesCS3D01G532100 chr5A 79.245 159 27 4 9 162 314145302 314145145 1.200000e-18 106.0
26 TraesCS3D01G532100 chr6A 90.148 609 49 8 8155 8762 123505619 123506217 0.000000e+00 782.0
27 TraesCS3D01G532100 chr6A 84.286 70 9 2 5870 5938 115279298 115279366 5.680000e-07 67.6
28 TraesCS3D01G532100 chr1A 81.057 454 64 15 5433 5865 13672157 13671705 8.420000e-90 342.0
29 TraesCS3D01G532100 chr1A 78.299 341 57 15 4463 4791 13672905 13672570 4.150000e-48 204.0
30 TraesCS3D01G532100 chr1A 76.771 353 50 21 1000 1324 13676213 13675865 1.510000e-37 169.0
31 TraesCS3D01G532100 chr1A 97.826 46 1 0 5870 5915 376754396 376754441 7.290000e-11 80.5
32 TraesCS3D01G532100 chr1A 83.333 84 11 1 73 156 578209448 578209368 3.390000e-09 75.0
33 TraesCS3D01G532100 chr1B 80.294 477 64 23 5413 5864 17354364 17353893 5.070000e-87 333.0
34 TraesCS3D01G532100 chr1B 87.391 230 29 0 5428 5657 16920216 16919987 1.880000e-66 265.0
35 TraesCS3D01G532100 chr1B 78.917 351 60 8 4447 4791 17355371 17355029 8.850000e-55 226.0
36 TraesCS3D01G532100 chr1B 79.403 335 55 8 4463 4791 16921231 16920905 3.180000e-54 224.0
37 TraesCS3D01G532100 chr1B 87.629 97 8 3 1174 1268 17358275 17358181 9.300000e-20 110.0
38 TraesCS3D01G532100 chr1D 80.568 458 60 20 5433 5865 11546224 11545771 8.480000e-85 326.0
39 TraesCS3D01G532100 chr1D 77.591 357 63 15 4447 4791 11547151 11546800 5.360000e-47 200.0
40 TraesCS3D01G532100 chr1D 78.322 286 37 16 1000 1268 11550514 11550237 2.530000e-35 161.0
41 TraesCS3D01G532100 chr1D 84.706 85 9 2 73 157 378722186 378722266 2.030000e-11 82.4
42 TraesCS3D01G532100 chr7D 76.966 178 33 6 5 179 54793244 54793416 2.600000e-15 95.3
43 TraesCS3D01G532100 chr6B 97.917 48 1 0 5868 5915 616933654 616933607 5.640000e-12 84.2
44 TraesCS3D01G532100 chr6B 85.333 75 8 2 5871 5945 136794089 136794018 3.390000e-09 75.0
45 TraesCS3D01G532100 chr6B 85.333 75 8 2 5871 5945 136795042 136794971 3.390000e-09 75.0
46 TraesCS3D01G532100 chr6B 84.416 77 5 7 5870 5942 668427352 668427425 1.580000e-07 69.4
47 TraesCS3D01G532100 chr5B 92.727 55 4 0 108 162 263936427 263936373 7.290000e-11 80.5
48 TraesCS3D01G532100 chr5D 87.692 65 4 4 5872 5934 334903429 334903367 1.220000e-08 73.1
49 TraesCS3D01G532100 chr4D 93.617 47 3 0 109 155 471966258 471966304 4.390000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G532100 chr3D 608064819 608073580 8761 True 16181.000000 16181 100.000000 1 8762 1 chr3D.!!$R1 8761
1 TraesCS3D01G532100 chr3A 740349291 740356920 7629 True 1984.333333 5978 90.330167 572 8415 6 chr3A.!!$R1 7843
2 TraesCS3D01G532100 chr3A 63069145 63069745 600 False 791.000000 791 90.507000 8159 8762 1 chr3A.!!$F1 603
3 TraesCS3D01G532100 chr3B 817835385 817836774 1389 True 1533.000000 1533 86.828000 8 1423 1 chr3B.!!$R2 1415
4 TraesCS3D01G532100 chr3B 817820545 817829113 8568 True 1502.375000 5694 88.215625 8 8762 8 chr3B.!!$R3 8754
5 TraesCS3D01G532100 chr3B 370553207 370553799 592 True 824.000000 824 91.694000 8163 8762 1 chr3B.!!$R1 599
6 TraesCS3D01G532100 chr2A 599425813 599426406 593 True 828.000000 828 91.708000 8161 8762 1 chr2A.!!$R1 601
7 TraesCS3D01G532100 chr7B 587653387 587653978 591 False 808.000000 808 91.181000 8163 8762 1 chr7B.!!$F1 599
8 TraesCS3D01G532100 chr7B 241773673 241774264 591 True 797.000000 797 90.849000 8163 8762 1 chr7B.!!$R1 599
9 TraesCS3D01G532100 chr7A 702619188 702619782 594 True 802.000000 802 90.909000 8159 8762 1 chr7A.!!$R1 603
10 TraesCS3D01G532100 chr5A 237958424 237959013 589 False 800.000000 800 91.015000 8163 8762 1 chr5A.!!$F1 599
11 TraesCS3D01G532100 chr6A 123505619 123506217 598 False 782.000000 782 90.148000 8155 8762 1 chr6A.!!$F2 607
12 TraesCS3D01G532100 chr1A 13671705 13676213 4508 True 238.333333 342 78.709000 1000 5865 3 chr1A.!!$R2 4865
13 TraesCS3D01G532100 chr1B 16919987 16921231 1244 True 244.500000 265 83.397000 4463 5657 2 chr1B.!!$R1 1194
14 TraesCS3D01G532100 chr1B 17353893 17358275 4382 True 223.000000 333 82.280000 1174 5864 3 chr1B.!!$R2 4690
15 TraesCS3D01G532100 chr1D 11545771 11550514 4743 True 229.000000 326 78.827000 1000 5865 3 chr1D.!!$R1 4865

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
343 345 0.109319 GTTTAGGCCGTCGAACCGTA 60.109 55.000 0.00 0.00 0.00 4.02 F
556 567 0.305617 GCAGCAAAGGCAAACAAAGC 59.694 50.000 0.00 0.00 44.61 3.51 F
562 573 0.307760 AAGGCAAACAAAGCTCGTCG 59.692 50.000 0.00 0.00 0.00 5.12 F
831 858 0.343726 CCTCCTTTCCCCCTACTCCT 59.656 60.000 0.00 0.00 0.00 3.69 F
942 969 0.391793 CTCTTCTTGGAGGCGTTCCC 60.392 60.000 5.77 0.00 46.19 3.97 F
2013 2601 0.606401 ACATTCAGTCCAAGTGGCCG 60.606 55.000 0.00 0.00 34.44 6.13 F
2557 3260 0.653636 TTCGTGCGAACTGGTTGAAC 59.346 50.000 2.65 0.00 0.00 3.18 F
3717 4442 0.037590 CAAGGATTGGTTCCCGGTCA 59.962 55.000 0.00 0.00 46.81 4.02 F
4824 6318 5.448632 GGAACCTGTTTATTATCGGTGCTTG 60.449 44.000 0.00 0.00 0.00 4.01 F
4870 6364 0.177141 TAGCAAAATAGCGTCGGCCT 59.823 50.000 0.00 0.00 41.24 5.19 F
4972 6466 0.315251 TCAGAATGCTATAGCGCGCT 59.685 50.000 38.01 38.01 45.83 5.92 F
4973 6467 1.539827 TCAGAATGCTATAGCGCGCTA 59.460 47.619 39.72 39.72 45.83 4.26 F
4974 6468 2.164422 TCAGAATGCTATAGCGCGCTAT 59.836 45.455 44.16 44.16 45.83 2.97 F
5105 6602 2.224378 CCAGCTGGAACTCTTCTTGACA 60.224 50.000 29.88 0.00 37.39 3.58 F
7209 9395 5.105473 GCCCTATACGCTTAGGTTATCATCA 60.105 44.000 9.67 0.00 37.62 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2006 2594 0.321653 GAACATGAACTCCGGCCACT 60.322 55.000 2.24 0.00 0.00 4.00 R
2008 2596 0.327924 ATGAACATGAACTCCGGCCA 59.672 50.000 2.24 0.00 0.00 5.36 R
2539 3241 0.460459 TGTTCAACCAGTTCGCACGA 60.460 50.000 0.00 0.00 0.00 4.35 R
2764 3471 2.038952 TGCACCAGAACATTGAGTAGCT 59.961 45.455 0.00 0.00 0.00 3.32 R
2779 3486 2.093181 ACCGCATTATTCTAGTGCACCA 60.093 45.455 14.63 0.00 40.94 4.17 R
3717 4442 1.558294 GAAGATAAACTCCCACCGGGT 59.442 52.381 6.32 0.00 44.74 5.28 R
4171 4905 3.399440 TGGAACCAAATTGGCATTCAC 57.601 42.857 12.67 4.80 42.67 3.18 R
4851 6345 0.177141 AGGCCGACGCTATTTTGCTA 59.823 50.000 0.00 0.00 34.44 3.49 R
6208 8390 1.144708 TCCCAGCTGAAACCATTGACA 59.855 47.619 17.39 0.00 0.00 3.58 R
6209 8391 1.909700 TCCCAGCTGAAACCATTGAC 58.090 50.000 17.39 0.00 0.00 3.18 R
6210 8392 2.041485 TCATCCCAGCTGAAACCATTGA 59.959 45.455 17.39 5.41 0.00 2.57 R
6354 8536 9.812347 TCACCTTATTTCCAGATATTAATGCAT 57.188 29.630 0.00 0.00 0.00 3.96 R
7209 9395 4.204799 GGGTTAGACACAAACCTTGAGTT 58.795 43.478 5.09 0.00 44.83 3.01 R
7454 9642 7.192852 ACTCATTCTCCACATCTTTACTCAT 57.807 36.000 0.00 0.00 0.00 2.90 R
8593 10801 0.803740 CTCTGCAGGCTGAAGCTTTC 59.196 55.000 20.86 0.00 41.70 2.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.513204 CCGTGGGCTCTGCATCAG 60.513 66.667 0.00 0.00 0.00 2.90
32 33 1.397343 CATCAGTGTGATGCAGACAGC 59.603 52.381 4.04 0.00 46.37 4.40
37 39 1.131883 GTGTGATGCAGACAGCCATTC 59.868 52.381 1.63 0.00 44.83 2.67
41 43 3.881688 GTGATGCAGACAGCCATTCTTAT 59.118 43.478 0.00 0.00 44.83 1.73
50 52 9.403110 GCAGACAGCCATTCTTATTAATTATTG 57.597 33.333 0.00 0.00 37.23 1.90
54 56 8.694540 ACAGCCATTCTTATTAATTATTGTGCA 58.305 29.630 0.00 0.00 0.00 4.57
55 57 9.531942 CAGCCATTCTTATTAATTATTGTGCAA 57.468 29.630 0.00 0.00 0.00 4.08
77 79 9.303537 TGCAAAGTAAATAACAAAGTAAACCAC 57.696 29.630 0.00 0.00 0.00 4.16
84 86 4.625972 AACAAAGTAAACCACGACCAAG 57.374 40.909 0.00 0.00 0.00 3.61
98 100 4.271049 CACGACCAAGCCATTACAAGATAG 59.729 45.833 0.00 0.00 0.00 2.08
99 101 4.161565 ACGACCAAGCCATTACAAGATAGA 59.838 41.667 0.00 0.00 0.00 1.98
101 103 5.584649 CGACCAAGCCATTACAAGATAGAAA 59.415 40.000 0.00 0.00 0.00 2.52
137 139 2.517935 GACTAAGTCGACTTCTTCCGC 58.482 52.381 32.86 14.30 37.40 5.54
139 141 2.095161 ACTAAGTCGACTTCTTCCGCAG 60.095 50.000 32.86 23.63 37.40 5.18
142 144 1.080501 TCGACTTCTTCCGCAGCAG 60.081 57.895 0.00 0.00 0.00 4.24
154 156 1.283793 GCAGCAGCGCTTTCAAGAA 59.716 52.632 7.50 0.00 36.40 2.52
156 158 0.109873 CAGCAGCGCTTTCAAGAAGG 60.110 55.000 7.50 0.00 36.40 3.46
175 177 1.818674 GGAAAAACGTCCTCATGCCAT 59.181 47.619 0.00 0.00 34.56 4.40
181 183 1.723870 GTCCTCATGCCATCGTTGC 59.276 57.895 0.00 0.00 0.00 4.17
184 186 1.314534 CCTCATGCCATCGTTGCCAA 61.315 55.000 0.00 0.00 0.00 4.52
198 200 3.303495 CGTTGCCAAGTACGATTGTAGAG 59.697 47.826 0.00 0.00 40.03 2.43
199 201 3.520290 TGCCAAGTACGATTGTAGAGG 57.480 47.619 0.00 0.00 0.00 3.69
210 212 5.202004 ACGATTGTAGAGGACCTAGACAAT 58.798 41.667 24.03 24.03 30.96 2.71
211 213 5.067936 ACGATTGTAGAGGACCTAGACAATG 59.932 44.000 26.92 21.66 29.44 2.82
217 219 3.118956 AGAGGACCTAGACAATGCTTTCG 60.119 47.826 0.00 0.00 0.00 3.46
220 222 3.751698 GGACCTAGACAATGCTTTCGTTT 59.248 43.478 0.00 0.00 0.00 3.60
225 227 6.823689 ACCTAGACAATGCTTTCGTTTCATAT 59.176 34.615 0.00 0.00 0.00 1.78
226 228 7.985184 ACCTAGACAATGCTTTCGTTTCATATA 59.015 33.333 0.00 0.00 0.00 0.86
230 232 9.341899 AGACAATGCTTTCGTTTCATATAAAAC 57.658 29.630 0.00 0.00 36.09 2.43
249 251 6.582437 AAAACTAAACATTTGTGAAAGCCG 57.418 33.333 0.00 0.00 0.00 5.52
250 252 3.638484 ACTAAACATTTGTGAAAGCCGC 58.362 40.909 0.00 0.00 0.00 6.53
251 253 1.486439 AAACATTTGTGAAAGCCGCG 58.514 45.000 0.00 0.00 0.00 6.46
275 277 4.148825 GCCCACGCCACGAGAGAT 62.149 66.667 0.00 0.00 0.00 2.75
276 278 2.782222 GCCCACGCCACGAGAGATA 61.782 63.158 0.00 0.00 0.00 1.98
278 280 0.249073 CCCACGCCACGAGAGATAAG 60.249 60.000 0.00 0.00 0.00 1.73
279 281 0.738975 CCACGCCACGAGAGATAAGA 59.261 55.000 0.00 0.00 0.00 2.10
280 282 1.268794 CCACGCCACGAGAGATAAGAG 60.269 57.143 0.00 0.00 0.00 2.85
281 283 0.382515 ACGCCACGAGAGATAAGAGC 59.617 55.000 0.00 0.00 0.00 4.09
282 284 0.665835 CGCCACGAGAGATAAGAGCT 59.334 55.000 0.00 0.00 0.00 4.09
301 303 2.092211 GCTCGAGTGACACCATAAAACG 59.908 50.000 15.13 0.00 0.00 3.60
320 322 1.324435 CGCATCATGTCCAGTAACACG 59.676 52.381 0.00 0.00 30.55 4.49
324 326 1.068125 TCATGTCCAGTAACACGACCG 60.068 52.381 0.00 0.00 30.55 4.79
325 327 0.963962 ATGTCCAGTAACACGACCGT 59.036 50.000 0.00 0.00 30.55 4.83
343 345 0.109319 GTTTAGGCCGTCGAACCGTA 60.109 55.000 0.00 0.00 0.00 4.02
346 348 1.369091 TAGGCCGTCGAACCGTAGAC 61.369 60.000 0.00 0.00 0.00 2.59
353 355 2.084681 CGAACCGTAGACACGTGCC 61.085 63.158 17.22 3.99 46.96 5.01
382 384 3.054878 GTGGCAGAAGCAATGTTCTTTG 58.945 45.455 0.00 0.00 44.61 2.77
383 385 2.694628 TGGCAGAAGCAATGTTCTTTGT 59.305 40.909 0.00 0.00 44.61 2.83
406 408 6.036626 TGTCAAACACGGTATACAAGCATATG 59.963 38.462 5.01 0.00 0.00 1.78
407 409 5.525745 TCAAACACGGTATACAAGCATATGG 59.474 40.000 4.56 0.00 0.00 2.74
414 421 7.008901 CACGGTATACAAGCATATGGTTATACG 59.991 40.741 19.18 18.58 32.21 3.06
421 428 6.826741 ACAAGCATATGGTTATACGAAAACCT 59.173 34.615 19.18 0.00 45.53 3.50
422 429 7.338449 ACAAGCATATGGTTATACGAAAACCTT 59.662 33.333 19.18 12.74 45.53 3.50
473 484 2.728397 AAAAAGGCCGGTCAACCTC 58.272 52.632 9.71 0.00 34.31 3.85
491 502 4.135747 CCTCAAAAAGGCCTCAAACAAA 57.864 40.909 5.23 0.00 38.67 2.83
545 556 3.437795 CCGGGAGCAGCAGCAAAG 61.438 66.667 3.17 0.00 45.49 2.77
546 557 3.437795 CGGGAGCAGCAGCAAAGG 61.438 66.667 3.17 0.00 45.49 3.11
547 558 3.756727 GGGAGCAGCAGCAAAGGC 61.757 66.667 3.17 0.00 45.49 4.35
548 559 2.987547 GGAGCAGCAGCAAAGGCA 60.988 61.111 3.17 0.00 45.49 4.75
549 560 2.567497 GGAGCAGCAGCAAAGGCAA 61.567 57.895 3.17 0.00 45.49 4.52
550 561 1.364901 GAGCAGCAGCAAAGGCAAA 59.635 52.632 3.17 0.00 45.49 3.68
551 562 0.942884 GAGCAGCAGCAAAGGCAAAC 60.943 55.000 3.17 0.00 45.49 2.93
552 563 1.227321 GCAGCAGCAAAGGCAAACA 60.227 52.632 0.00 0.00 44.61 2.83
553 564 0.810823 GCAGCAGCAAAGGCAAACAA 60.811 50.000 0.00 0.00 44.61 2.83
554 565 1.654317 CAGCAGCAAAGGCAAACAAA 58.346 45.000 0.00 0.00 44.61 2.83
555 566 1.595794 CAGCAGCAAAGGCAAACAAAG 59.404 47.619 0.00 0.00 44.61 2.77
556 567 0.305617 GCAGCAAAGGCAAACAAAGC 59.694 50.000 0.00 0.00 44.61 3.51
557 568 1.944032 CAGCAAAGGCAAACAAAGCT 58.056 45.000 0.00 0.00 44.61 3.74
558 569 1.862827 CAGCAAAGGCAAACAAAGCTC 59.137 47.619 0.00 0.00 44.61 4.09
559 570 0.854705 GCAAAGGCAAACAAAGCTCG 59.145 50.000 0.00 0.00 40.72 5.03
560 571 1.802508 GCAAAGGCAAACAAAGCTCGT 60.803 47.619 0.00 0.00 40.72 4.18
561 572 2.119457 CAAAGGCAAACAAAGCTCGTC 58.881 47.619 0.00 0.00 0.00 4.20
562 573 0.307760 AAGGCAAACAAAGCTCGTCG 59.692 50.000 0.00 0.00 0.00 5.12
563 574 1.082104 GGCAAACAAAGCTCGTCGG 60.082 57.895 0.00 0.00 0.00 4.79
564 575 1.725973 GCAAACAAAGCTCGTCGGC 60.726 57.895 0.00 0.00 0.00 5.54
565 576 1.082104 CAAACAAAGCTCGTCGGCC 60.082 57.895 0.00 0.00 0.00 6.13
566 577 2.604174 AAACAAAGCTCGTCGGCCG 61.604 57.895 22.12 22.12 38.13 6.13
746 768 1.226156 CGGACAGCGACTTCTCTCG 60.226 63.158 0.00 0.00 36.70 4.04
752 774 2.492090 CGACTTCTCTCGCCCCAG 59.508 66.667 0.00 0.00 0.00 4.45
753 775 2.185608 GACTTCTCTCGCCCCAGC 59.814 66.667 0.00 0.00 0.00 4.85
754 776 2.284258 ACTTCTCTCGCCCCAGCT 60.284 61.111 0.00 0.00 36.60 4.24
755 777 2.291457 GACTTCTCTCGCCCCAGCTC 62.291 65.000 0.00 0.00 36.60 4.09
756 778 2.283894 TTCTCTCGCCCCAGCTCA 60.284 61.111 0.00 0.00 36.60 4.26
757 779 2.570582 CTTCTCTCGCCCCAGCTCAC 62.571 65.000 0.00 0.00 36.60 3.51
758 780 3.073735 CTCTCGCCCCAGCTCACT 61.074 66.667 0.00 0.00 36.60 3.41
759 781 3.071206 TCTCGCCCCAGCTCACTC 61.071 66.667 0.00 0.00 36.60 3.51
760 782 4.154347 CTCGCCCCAGCTCACTCC 62.154 72.222 0.00 0.00 36.60 3.85
825 852 1.307430 GCTCTCCTCCTTTCCCCCT 60.307 63.158 0.00 0.00 0.00 4.79
831 858 0.343726 CCTCCTTTCCCCCTACTCCT 59.656 60.000 0.00 0.00 0.00 3.69
832 859 1.693083 CCTCCTTTCCCCCTACTCCTC 60.693 61.905 0.00 0.00 0.00 3.71
837 864 1.898190 TTCCCCCTACTCCTCCCCAG 61.898 65.000 0.00 0.00 0.00 4.45
897 924 1.152735 CCGGTCTCTAGCCCTGCTA 60.153 63.158 0.00 0.00 40.44 3.49
933 960 7.112779 AGTTCTGTTCTTTTTCTCTTCTTGGA 58.887 34.615 0.00 0.00 0.00 3.53
938 965 2.930826 TTTTCTCTTCTTGGAGGCGT 57.069 45.000 0.00 0.00 34.39 5.68
942 969 0.391793 CTCTTCTTGGAGGCGTTCCC 60.392 60.000 5.77 0.00 46.19 3.97
945 972 1.415672 TTCTTGGAGGCGTTCCCTGT 61.416 55.000 5.77 0.00 46.60 4.00
1432 1538 1.203013 TCTCCGGTCTCTTTCAGGTGA 60.203 52.381 0.00 0.00 0.00 4.02
1436 1547 2.622436 CGGTCTCTTTCAGGTGATTCC 58.378 52.381 0.00 0.00 0.00 3.01
1465 1580 7.565029 TGAAGAATATATCCCTGTCTGAACTCA 59.435 37.037 0.00 0.00 0.00 3.41
1467 1582 8.503428 AGAATATATCCCTGTCTGAACTCATT 57.497 34.615 0.00 0.00 0.00 2.57
1479 1594 9.160496 CTGTCTGAACTCATTTCTTATTAAGCT 57.840 33.333 0.00 0.00 34.97 3.74
1488 1603 9.107177 CTCATTTCTTATTAAGCTCATGTGACT 57.893 33.333 0.00 0.00 0.00 3.41
1490 1605 6.668541 TTCTTATTAAGCTCATGTGACTGC 57.331 37.500 0.00 0.00 0.00 4.40
1510 1625 3.138304 GCGTTCTGGATATACATGCCAA 58.862 45.455 0.00 0.00 0.00 4.52
1551 1666 6.035650 GTCAACGCTGTAATGCTAATGTTCTA 59.964 38.462 0.00 0.00 0.00 2.10
1594 1997 6.463995 TTGTTTGATTAGTTCTGTTGCCTT 57.536 33.333 0.00 0.00 0.00 4.35
1595 1998 6.072112 TGTTTGATTAGTTCTGTTGCCTTC 57.928 37.500 0.00 0.00 0.00 3.46
1596 1999 5.592282 TGTTTGATTAGTTCTGTTGCCTTCA 59.408 36.000 0.00 0.00 0.00 3.02
1597 2000 5.947228 TTGATTAGTTCTGTTGCCTTCAG 57.053 39.130 0.00 0.00 0.00 3.02
1778 2210 5.243060 TCCGGGTGTTACTGATAGTGATATG 59.757 44.000 0.00 0.00 0.00 1.78
1824 2258 7.009179 TGTAGAATATTTAGAGGATGCCTGG 57.991 40.000 0.00 0.00 31.76 4.45
1958 2546 0.953960 GGTTGCGGAGTGTGGTTAGG 60.954 60.000 0.00 0.00 0.00 2.69
1977 2565 9.629878 TGGTTAGGTTTTCAGTTAGTTTGATTA 57.370 29.630 0.00 0.00 0.00 1.75
1994 2582 8.691797 AGTTTGATTACTTTTGTTGCCTCTTAA 58.308 29.630 0.00 0.00 0.00 1.85
2004 2592 4.072131 TGTTGCCTCTTAACATTCAGTCC 58.928 43.478 0.00 0.00 33.43 3.85
2006 2594 4.365514 TGCCTCTTAACATTCAGTCCAA 57.634 40.909 0.00 0.00 0.00 3.53
2007 2595 4.326826 TGCCTCTTAACATTCAGTCCAAG 58.673 43.478 0.00 0.00 0.00 3.61
2008 2596 4.202461 TGCCTCTTAACATTCAGTCCAAGT 60.202 41.667 0.00 0.00 0.00 3.16
2010 2598 4.697352 CCTCTTAACATTCAGTCCAAGTGG 59.303 45.833 0.00 0.00 33.39 4.00
2011 2599 4.072131 TCTTAACATTCAGTCCAAGTGGC 58.928 43.478 0.00 0.00 34.44 5.01
2012 2600 1.620822 AACATTCAGTCCAAGTGGCC 58.379 50.000 0.00 0.00 34.44 5.36
2013 2601 0.606401 ACATTCAGTCCAAGTGGCCG 60.606 55.000 0.00 0.00 34.44 6.13
2036 2624 5.452496 CGGAGTTCATGTTCATCTGAGGTAT 60.452 44.000 0.00 0.00 0.00 2.73
2037 2625 5.757320 GGAGTTCATGTTCATCTGAGGTATG 59.243 44.000 0.00 0.00 0.00 2.39
2038 2626 5.678583 AGTTCATGTTCATCTGAGGTATGG 58.321 41.667 0.00 0.00 0.00 2.74
2039 2627 5.190528 AGTTCATGTTCATCTGAGGTATGGT 59.809 40.000 0.00 0.00 0.00 3.55
2040 2628 6.384015 AGTTCATGTTCATCTGAGGTATGGTA 59.616 38.462 0.00 0.00 0.00 3.25
2041 2629 6.161855 TCATGTTCATCTGAGGTATGGTAC 57.838 41.667 0.00 0.00 0.00 3.34
2042 2630 5.899547 TCATGTTCATCTGAGGTATGGTACT 59.100 40.000 0.00 0.00 0.00 2.73
2043 2631 5.598416 TGTTCATCTGAGGTATGGTACTG 57.402 43.478 0.00 0.00 0.00 2.74
2044 2632 5.023452 TGTTCATCTGAGGTATGGTACTGT 58.977 41.667 0.00 0.00 0.00 3.55
2045 2633 5.483937 TGTTCATCTGAGGTATGGTACTGTT 59.516 40.000 0.00 0.00 0.00 3.16
2046 2634 6.013725 TGTTCATCTGAGGTATGGTACTGTTT 60.014 38.462 0.00 0.00 0.00 2.83
2047 2635 5.977635 TCATCTGAGGTATGGTACTGTTTG 58.022 41.667 0.00 0.00 0.00 2.93
2048 2636 5.719563 TCATCTGAGGTATGGTACTGTTTGA 59.280 40.000 0.00 0.00 0.00 2.69
2049 2637 5.661056 TCTGAGGTATGGTACTGTTTGAG 57.339 43.478 0.00 0.00 0.00 3.02
2050 2638 4.081642 TCTGAGGTATGGTACTGTTTGAGC 60.082 45.833 0.00 0.00 0.00 4.26
2051 2639 3.838317 TGAGGTATGGTACTGTTTGAGCT 59.162 43.478 0.00 0.00 0.00 4.09
2052 2640 4.286032 TGAGGTATGGTACTGTTTGAGCTT 59.714 41.667 0.00 0.00 0.00 3.74
2053 2641 4.579869 AGGTATGGTACTGTTTGAGCTTG 58.420 43.478 0.00 0.00 0.00 4.01
2054 2642 4.041691 AGGTATGGTACTGTTTGAGCTTGT 59.958 41.667 0.00 0.00 0.00 3.16
2055 2643 5.247564 AGGTATGGTACTGTTTGAGCTTGTA 59.752 40.000 0.00 0.00 0.00 2.41
2071 2659 5.072741 AGCTTGTATTGGGGTATATGCTTG 58.927 41.667 0.00 0.00 0.00 4.01
2110 2698 4.981674 TGTTTCTGAATCGAATTGTTTGGC 59.018 37.500 0.00 0.00 0.00 4.52
2116 2707 6.016693 TCTGAATCGAATTGTTTGGCTGTTAA 60.017 34.615 0.00 0.00 0.00 2.01
2121 2712 6.092092 TCGAATTGTTTGGCTGTTAATGATG 58.908 36.000 0.00 0.00 0.00 3.07
2158 2749 4.214971 GCTGCTCTTTTTGTCTCTGAATCA 59.785 41.667 0.00 0.00 0.00 2.57
2159 2750 5.278169 GCTGCTCTTTTTGTCTCTGAATCAA 60.278 40.000 0.00 0.00 0.00 2.57
2166 2757 9.874205 TCTTTTTGTCTCTGAATCAAATTGTTT 57.126 25.926 7.42 0.00 32.41 2.83
2173 2764 7.168135 GTCTCTGAATCAAATTGTTTTGGTGTC 59.832 37.037 0.00 0.00 42.10 3.67
2176 2767 6.638610 TGAATCAAATTGTTTTGGTGTCACT 58.361 32.000 2.35 0.00 42.10 3.41
2202 2793 5.095145 AGTGATATATGCCACTATGCCAG 57.905 43.478 5.49 0.00 41.38 4.85
2203 2794 4.533707 AGTGATATATGCCACTATGCCAGT 59.466 41.667 5.49 0.00 41.38 4.00
2204 2795 5.013495 AGTGATATATGCCACTATGCCAGTT 59.987 40.000 5.49 0.00 41.38 3.16
2205 2796 5.707298 GTGATATATGCCACTATGCCAGTTT 59.293 40.000 0.00 0.00 34.26 2.66
2206 2797 5.939883 TGATATATGCCACTATGCCAGTTTC 59.060 40.000 0.00 0.00 34.26 2.78
2207 2798 2.814805 ATGCCACTATGCCAGTTTCT 57.185 45.000 0.00 0.00 34.26 2.52
2208 2799 2.113860 TGCCACTATGCCAGTTTCTC 57.886 50.000 0.00 0.00 34.26 2.87
2209 2800 1.630369 TGCCACTATGCCAGTTTCTCT 59.370 47.619 0.00 0.00 34.26 3.10
2210 2801 2.012673 GCCACTATGCCAGTTTCTCTG 58.987 52.381 0.00 0.00 43.27 3.35
2211 2802 2.616510 GCCACTATGCCAGTTTCTCTGT 60.617 50.000 0.00 0.00 42.19 3.41
2212 2803 3.679389 CCACTATGCCAGTTTCTCTGTT 58.321 45.455 0.00 0.00 42.19 3.16
2213 2804 4.074970 CCACTATGCCAGTTTCTCTGTTT 58.925 43.478 0.00 0.00 42.19 2.83
2214 2805 4.083110 CCACTATGCCAGTTTCTCTGTTTG 60.083 45.833 0.00 0.00 42.19 2.93
2215 2806 4.516698 CACTATGCCAGTTTCTCTGTTTGT 59.483 41.667 0.00 0.00 42.19 2.83
2216 2807 5.009010 CACTATGCCAGTTTCTCTGTTTGTT 59.991 40.000 0.00 0.00 42.19 2.83
2217 2808 5.594317 ACTATGCCAGTTTCTCTGTTTGTTT 59.406 36.000 0.00 0.00 42.19 2.83
2218 2809 4.370364 TGCCAGTTTCTCTGTTTGTTTC 57.630 40.909 0.00 0.00 42.19 2.78
2219 2810 4.016444 TGCCAGTTTCTCTGTTTGTTTCT 58.984 39.130 0.00 0.00 42.19 2.52
2220 2811 4.462483 TGCCAGTTTCTCTGTTTGTTTCTT 59.538 37.500 0.00 0.00 42.19 2.52
2221 2812 5.650266 TGCCAGTTTCTCTGTTTGTTTCTTA 59.350 36.000 0.00 0.00 42.19 2.10
2222 2813 6.151985 TGCCAGTTTCTCTGTTTGTTTCTTAA 59.848 34.615 0.00 0.00 42.19 1.85
2223 2814 7.147915 TGCCAGTTTCTCTGTTTGTTTCTTAAT 60.148 33.333 0.00 0.00 42.19 1.40
2224 2815 7.706607 GCCAGTTTCTCTGTTTGTTTCTTAATT 59.293 33.333 0.00 0.00 42.19 1.40
2225 2816 9.023967 CCAGTTTCTCTGTTTGTTTCTTAATTG 57.976 33.333 0.00 0.00 42.19 2.32
2226 2817 9.787532 CAGTTTCTCTGTTTGTTTCTTAATTGA 57.212 29.630 0.00 0.00 39.17 2.57
2234 2825 9.833894 CTGTTTGTTTCTTAATTGAATTGTTCG 57.166 29.630 0.00 0.00 0.00 3.95
2235 2826 8.812329 TGTTTGTTTCTTAATTGAATTGTTCGG 58.188 29.630 0.00 0.00 0.00 4.30
2236 2827 7.938563 TTGTTTCTTAATTGAATTGTTCGGG 57.061 32.000 0.00 0.00 0.00 5.14
2237 2828 7.045126 TGTTTCTTAATTGAATTGTTCGGGT 57.955 32.000 0.00 0.00 0.00 5.28
2238 2829 6.920758 TGTTTCTTAATTGAATTGTTCGGGTG 59.079 34.615 0.00 0.00 0.00 4.61
2239 2830 6.642707 TTCTTAATTGAATTGTTCGGGTGT 57.357 33.333 0.00 0.00 0.00 4.16
2240 2831 6.642707 TCTTAATTGAATTGTTCGGGTGTT 57.357 33.333 0.00 0.00 0.00 3.32
2241 2832 6.442952 TCTTAATTGAATTGTTCGGGTGTTG 58.557 36.000 0.00 0.00 0.00 3.33
2242 2833 2.500509 TTGAATTGTTCGGGTGTTGC 57.499 45.000 0.00 0.00 0.00 4.17
2243 2834 1.686355 TGAATTGTTCGGGTGTTGCT 58.314 45.000 0.00 0.00 0.00 3.91
2244 2835 1.336440 TGAATTGTTCGGGTGTTGCTG 59.664 47.619 0.00 0.00 0.00 4.41
2245 2836 1.606668 GAATTGTTCGGGTGTTGCTGA 59.393 47.619 0.00 0.00 0.00 4.26
2246 2837 1.909700 ATTGTTCGGGTGTTGCTGAT 58.090 45.000 0.00 0.00 0.00 2.90
2247 2838 1.686355 TTGTTCGGGTGTTGCTGATT 58.314 45.000 0.00 0.00 0.00 2.57
2248 2839 0.950836 TGTTCGGGTGTTGCTGATTG 59.049 50.000 0.00 0.00 0.00 2.67
2249 2840 0.951558 GTTCGGGTGTTGCTGATTGT 59.048 50.000 0.00 0.00 0.00 2.71
2250 2841 0.950836 TTCGGGTGTTGCTGATTGTG 59.049 50.000 0.00 0.00 0.00 3.33
2251 2842 0.888736 TCGGGTGTTGCTGATTGTGG 60.889 55.000 0.00 0.00 0.00 4.17
2252 2843 1.172180 CGGGTGTTGCTGATTGTGGT 61.172 55.000 0.00 0.00 0.00 4.16
2253 2844 1.880221 CGGGTGTTGCTGATTGTGGTA 60.880 52.381 0.00 0.00 0.00 3.25
2254 2845 1.539827 GGGTGTTGCTGATTGTGGTAC 59.460 52.381 0.00 0.00 0.00 3.34
2255 2846 2.504367 GGTGTTGCTGATTGTGGTACT 58.496 47.619 0.00 0.00 0.00 2.73
2256 2847 3.558321 GGGTGTTGCTGATTGTGGTACTA 60.558 47.826 0.00 0.00 0.00 1.82
2257 2848 3.684788 GGTGTTGCTGATTGTGGTACTAG 59.315 47.826 0.00 0.00 0.00 2.57
2258 2849 3.125316 GTGTTGCTGATTGTGGTACTAGC 59.875 47.826 0.00 0.00 0.00 3.42
2259 2850 3.007940 TGTTGCTGATTGTGGTACTAGCT 59.992 43.478 0.00 0.00 32.66 3.32
2260 2851 3.251479 TGCTGATTGTGGTACTAGCTG 57.749 47.619 0.00 0.00 32.66 4.24
2261 2852 2.567169 TGCTGATTGTGGTACTAGCTGT 59.433 45.455 0.00 0.00 32.66 4.40
2262 2853 3.767131 TGCTGATTGTGGTACTAGCTGTA 59.233 43.478 0.00 0.00 32.66 2.74
2266 2857 7.155328 GCTGATTGTGGTACTAGCTGTATATT 58.845 38.462 0.00 0.00 33.23 1.28
2267 2858 7.657761 GCTGATTGTGGTACTAGCTGTATATTT 59.342 37.037 0.00 0.00 33.23 1.40
2303 2894 6.542821 TGTGGATTGTTTAGAGGATGAAGTT 58.457 36.000 0.00 0.00 0.00 2.66
2304 2895 7.685481 TGTGGATTGTTTAGAGGATGAAGTTA 58.315 34.615 0.00 0.00 0.00 2.24
2305 2896 8.160765 TGTGGATTGTTTAGAGGATGAAGTTAA 58.839 33.333 0.00 0.00 0.00 2.01
2324 2915 3.415457 AAGAGAAGGTTCAAGCTCTGG 57.585 47.619 0.00 0.00 37.75 3.86
2344 2936 7.229506 GCTCTGGCTCTTAATTATGGTTGTTAT 59.770 37.037 0.00 0.00 35.22 1.89
2361 2953 5.871396 TGTTATGTTTTGGGCCTGTTAAA 57.129 34.783 4.53 0.00 0.00 1.52
2385 2977 7.404671 AAAATGTATTTCTGGTATGGTGACC 57.595 36.000 0.00 0.00 40.21 4.02
2423 3015 2.005537 GCTGCGCAAGTTGTTGACG 61.006 57.895 13.05 0.00 35.46 4.35
2427 3019 1.044725 GCGCAAGTTGTTGACGAATG 58.955 50.000 0.30 0.00 36.13 2.67
2428 3020 1.333702 GCGCAAGTTGTTGACGAATGA 60.334 47.619 0.30 0.00 36.13 2.57
2429 3021 2.563976 CGCAAGTTGTTGACGAATGAG 58.436 47.619 4.48 0.00 36.13 2.90
2461 3163 3.524541 CCAAAAGCATTATGTTCCTGCC 58.475 45.455 0.00 0.00 36.56 4.85
2516 3218 1.072331 GGTGTCTGCTTCCTTTCCTCA 59.928 52.381 0.00 0.00 0.00 3.86
2545 3248 6.102006 TGGTCTTAAATCTTAATTCGTGCG 57.898 37.500 0.00 0.00 0.00 5.34
2557 3260 0.653636 TTCGTGCGAACTGGTTGAAC 59.346 50.000 2.65 0.00 0.00 3.18
2570 3273 4.163458 ACTGGTTGAACAGGAAGTTACTGA 59.837 41.667 22.32 0.00 41.51 3.41
2635 3338 6.607019 AGTAATTTTTAGTCTGGTCCCACAA 58.393 36.000 0.00 0.00 0.00 3.33
2639 3342 2.112279 TAGTCTGGTCCCACAAAGGT 57.888 50.000 0.00 0.00 34.66 3.50
2641 3344 1.569072 AGTCTGGTCCCACAAAGGTTT 59.431 47.619 0.00 0.00 34.66 3.27
2642 3345 2.024369 AGTCTGGTCCCACAAAGGTTTT 60.024 45.455 0.00 0.00 34.66 2.43
2643 3346 2.764010 GTCTGGTCCCACAAAGGTTTTT 59.236 45.455 0.00 0.00 34.66 1.94
2644 3347 3.028130 TCTGGTCCCACAAAGGTTTTTC 58.972 45.455 0.00 0.00 34.66 2.29
2645 3348 3.031013 CTGGTCCCACAAAGGTTTTTCT 58.969 45.455 0.00 0.00 34.66 2.52
2646 3349 4.079672 TCTGGTCCCACAAAGGTTTTTCTA 60.080 41.667 0.00 0.00 34.66 2.10
2647 3350 3.955551 TGGTCCCACAAAGGTTTTTCTAC 59.044 43.478 0.00 0.00 34.66 2.59
2648 3351 3.319972 GGTCCCACAAAGGTTTTTCTACC 59.680 47.826 0.00 0.00 38.53 3.18
2654 3360 7.039363 TCCCACAAAGGTTTTTCTACCAATATG 60.039 37.037 0.00 0.00 40.82 1.78
2674 3380 9.421806 CAATATGATACAAAAGTTTTCTGCCAA 57.578 29.630 0.00 0.00 0.00 4.52
2692 3398 8.995027 TCTGCCAATATATTTGACTATTTGGT 57.005 30.769 0.81 0.00 0.00 3.67
2766 3473 9.757227 ATCTGAAAGTATAATTCTGTGACTAGC 57.243 33.333 0.00 0.00 33.76 3.42
2767 3474 8.972127 TCTGAAAGTATAATTCTGTGACTAGCT 58.028 33.333 0.00 0.00 33.76 3.32
2772 3479 8.982091 AGTATAATTCTGTGACTAGCTACTCA 57.018 34.615 0.00 0.00 0.00 3.41
2773 3480 9.409918 AGTATAATTCTGTGACTAGCTACTCAA 57.590 33.333 4.84 0.00 0.00 3.02
2776 3483 5.984695 TTCTGTGACTAGCTACTCAATGT 57.015 39.130 4.84 0.00 0.00 2.71
2777 3484 5.984695 TCTGTGACTAGCTACTCAATGTT 57.015 39.130 4.84 0.00 0.00 2.71
2778 3485 5.955488 TCTGTGACTAGCTACTCAATGTTC 58.045 41.667 4.84 0.00 0.00 3.18
2779 3486 5.712446 TCTGTGACTAGCTACTCAATGTTCT 59.288 40.000 4.84 0.00 0.00 3.01
2780 3487 5.714047 TGTGACTAGCTACTCAATGTTCTG 58.286 41.667 4.84 0.00 0.00 3.02
2781 3488 5.105752 GTGACTAGCTACTCAATGTTCTGG 58.894 45.833 4.84 0.00 0.00 3.86
2782 3489 4.772624 TGACTAGCTACTCAATGTTCTGGT 59.227 41.667 1.04 0.00 0.00 4.00
2783 3490 5.078411 ACTAGCTACTCAATGTTCTGGTG 57.922 43.478 0.00 0.00 0.00 4.17
2784 3491 2.704572 AGCTACTCAATGTTCTGGTGC 58.295 47.619 0.00 0.00 0.00 5.01
2882 3591 6.741992 TTGTAATACTTGCTTGGTCATGAG 57.258 37.500 0.00 0.00 0.00 2.90
2883 3592 4.635765 TGTAATACTTGCTTGGTCATGAGC 59.364 41.667 18.01 18.01 39.33 4.26
2954 3672 3.445096 GGTCAGGTTTCTTATGCAAGCAT 59.555 43.478 12.66 12.66 40.19 3.79
2962 3680 1.820519 CTTATGCAAGCATGTGGGTGT 59.179 47.619 17.26 0.00 37.82 4.16
2973 3691 5.754782 AGCATGTGGGTGTCATAATCTTTA 58.245 37.500 0.00 0.00 0.00 1.85
2981 3699 7.171678 GTGGGTGTCATAATCTTTATGTAGAGC 59.828 40.741 7.03 3.73 0.00 4.09
3191 3913 1.751927 CTCACCTGCCAGGCAATCC 60.752 63.158 17.03 0.00 39.63 3.01
3440 4162 0.687354 AACCTGTCGTCATCAAGGCT 59.313 50.000 0.00 0.00 0.00 4.58
3717 4442 0.037590 CAAGGATTGGTTCCCGGTCA 59.962 55.000 0.00 0.00 46.81 4.02
3748 4473 5.932883 GGGAGTTTATCTTCCCGACATAATC 59.067 44.000 0.00 0.00 35.79 1.75
3840 4574 6.286758 TGATCCACTCTATGCTCAATTTCTC 58.713 40.000 0.00 0.00 0.00 2.87
4171 4905 5.480073 TGGAATTCAGATTTTGGTGGTAAGG 59.520 40.000 7.93 0.00 0.00 2.69
4334 5820 5.551760 ACTAAACTGCAAATCCAAGATCG 57.448 39.130 0.00 0.00 0.00 3.69
4800 6294 8.765219 CGAGTTATACAGAAGGTATGGAAATTG 58.235 37.037 0.00 0.00 42.63 2.32
4824 6318 5.448632 GGAACCTGTTTATTATCGGTGCTTG 60.449 44.000 0.00 0.00 0.00 4.01
4828 6322 6.046593 CCTGTTTATTATCGGTGCTTGAGTA 58.953 40.000 0.00 0.00 0.00 2.59
4829 6323 6.018994 CCTGTTTATTATCGGTGCTTGAGTAC 60.019 42.308 0.00 0.00 0.00 2.73
4830 6324 5.813672 TGTTTATTATCGGTGCTTGAGTACC 59.186 40.000 8.07 8.07 45.70 3.34
4867 6361 3.706994 GCTATAGCAAAATAGCGTCGG 57.293 47.619 20.01 0.00 43.50 4.79
4868 6362 2.159827 GCTATAGCAAAATAGCGTCGGC 60.160 50.000 20.01 0.00 43.50 5.54
4869 6363 1.226746 ATAGCAAAATAGCGTCGGCC 58.773 50.000 0.00 0.00 41.24 6.13
4870 6364 0.177141 TAGCAAAATAGCGTCGGCCT 59.823 50.000 0.00 0.00 41.24 5.19
4871 6365 0.676782 AGCAAAATAGCGTCGGCCTT 60.677 50.000 0.00 0.00 41.24 4.35
4872 6366 1.011333 GCAAAATAGCGTCGGCCTTA 58.989 50.000 0.00 0.00 41.24 2.69
4873 6367 1.399089 GCAAAATAGCGTCGGCCTTAA 59.601 47.619 0.00 0.00 41.24 1.85
4874 6368 2.159490 GCAAAATAGCGTCGGCCTTAAA 60.159 45.455 0.00 0.00 41.24 1.52
4875 6369 3.671164 GCAAAATAGCGTCGGCCTTAAAA 60.671 43.478 0.00 0.00 41.24 1.52
4876 6370 3.752412 AAATAGCGTCGGCCTTAAAAC 57.248 42.857 0.00 0.00 41.24 2.43
4877 6371 2.389962 ATAGCGTCGGCCTTAAAACA 57.610 45.000 0.00 0.00 41.24 2.83
4878 6372 1.431496 TAGCGTCGGCCTTAAAACAC 58.569 50.000 0.00 0.00 41.24 3.32
4879 6373 1.154543 GCGTCGGCCTTAAAACACG 60.155 57.895 0.00 0.00 0.00 4.49
4880 6374 1.154543 CGTCGGCCTTAAAACACGC 60.155 57.895 0.00 0.00 0.00 5.34
4881 6375 1.562575 CGTCGGCCTTAAAACACGCT 61.563 55.000 0.00 0.00 0.00 5.07
4882 6376 1.431496 GTCGGCCTTAAAACACGCTA 58.569 50.000 0.00 0.00 0.00 4.26
4883 6377 2.004733 GTCGGCCTTAAAACACGCTAT 58.995 47.619 0.00 0.00 0.00 2.97
4884 6378 2.417586 GTCGGCCTTAAAACACGCTATT 59.582 45.455 0.00 0.00 0.00 1.73
4885 6379 3.618150 GTCGGCCTTAAAACACGCTATTA 59.382 43.478 0.00 0.00 0.00 0.98
4886 6380 3.866910 TCGGCCTTAAAACACGCTATTAG 59.133 43.478 0.00 0.00 0.00 1.73
4887 6381 3.619929 CGGCCTTAAAACACGCTATTAGT 59.380 43.478 0.00 0.00 0.00 2.24
4888 6382 4.493545 CGGCCTTAAAACACGCTATTAGTG 60.494 45.833 0.00 2.69 44.57 2.74
4896 6390 1.836383 ACGCTATTAGTGTGCTACGC 58.164 50.000 9.05 0.00 37.59 4.42
4897 6391 0.770590 CGCTATTAGTGTGCTACGCG 59.229 55.000 3.53 3.53 34.64 6.01
4898 6392 0.503117 GCTATTAGTGTGCTACGCGC 59.497 55.000 5.73 0.00 39.75 6.86
4899 6393 1.864435 GCTATTAGTGTGCTACGCGCT 60.864 52.381 5.73 0.00 40.03 5.92
4900 6394 2.603892 GCTATTAGTGTGCTACGCGCTA 60.604 50.000 5.73 0.00 40.03 4.26
4901 6395 2.795175 ATTAGTGTGCTACGCGCTAT 57.205 45.000 5.73 0.00 40.03 2.97
4902 6396 3.909776 ATTAGTGTGCTACGCGCTATA 57.090 42.857 5.73 0.00 40.03 1.31
4903 6397 2.963498 TAGTGTGCTACGCGCTATAG 57.037 50.000 5.73 8.56 40.03 1.31
4904 6398 0.317938 AGTGTGCTACGCGCTATAGC 60.318 55.000 25.48 25.48 44.48 2.97
4908 6402 1.704582 GCTACGCGCTATAGCATGC 59.295 57.895 26.61 18.11 43.81 4.06
4909 6403 0.734253 GCTACGCGCTATAGCATGCT 60.734 55.000 25.99 25.99 43.81 3.79
4910 6404 1.467543 GCTACGCGCTATAGCATGCTA 60.468 52.381 28.72 28.72 43.81 3.49
4911 6405 2.796383 GCTACGCGCTATAGCATGCTAT 60.796 50.000 35.68 35.68 43.81 2.97
4912 6406 2.370281 ACGCGCTATAGCATGCTATT 57.630 45.000 37.80 24.14 42.21 1.73
4913 6407 3.503827 ACGCGCTATAGCATGCTATTA 57.496 42.857 37.80 23.99 42.21 0.98
4914 6408 3.439293 ACGCGCTATAGCATGCTATTAG 58.561 45.455 37.80 30.10 42.21 1.73
4915 6409 2.217393 CGCGCTATAGCATGCTATTAGC 59.783 50.000 37.80 34.61 40.83 3.09
4916 6410 2.217393 GCGCTATAGCATGCTATTAGCG 59.783 50.000 42.10 42.10 46.48 4.26
4917 6411 3.695816 CGCTATAGCATGCTATTAGCGA 58.304 45.455 42.81 29.70 46.56 4.93
4918 6412 3.728221 CGCTATAGCATGCTATTAGCGAG 59.272 47.826 42.81 34.40 46.56 5.03
4919 6413 4.496507 CGCTATAGCATGCTATTAGCGAGA 60.497 45.833 42.81 28.75 46.56 4.04
4920 6414 5.527951 GCTATAGCATGCTATTAGCGAGAT 58.472 41.667 37.80 19.69 42.14 2.75
4921 6415 5.982516 GCTATAGCATGCTATTAGCGAGATT 59.017 40.000 37.80 18.09 42.14 2.40
4922 6416 6.478344 GCTATAGCATGCTATTAGCGAGATTT 59.522 38.462 37.80 17.62 42.14 2.17
4923 6417 7.010923 GCTATAGCATGCTATTAGCGAGATTTT 59.989 37.037 37.80 17.44 42.14 1.82
4924 6418 9.521503 CTATAGCATGCTATTAGCGAGATTTTA 57.478 33.333 37.80 18.48 46.26 1.52
4925 6419 8.954950 ATAGCATGCTATTAGCGAGATTTTAT 57.045 30.769 30.43 8.37 46.26 1.40
4927 6421 8.190888 AGCATGCTATTAGCGAGATTTTATAC 57.809 34.615 21.21 0.00 46.26 1.47
4928 6422 7.819415 AGCATGCTATTAGCGAGATTTTATACA 59.181 33.333 21.21 0.00 46.26 2.29
4929 6423 8.607459 GCATGCTATTAGCGAGATTTTATACAT 58.393 33.333 11.37 0.00 46.26 2.29
4931 6425 9.875691 ATGCTATTAGCGAGATTTTATACATCA 57.124 29.630 10.94 0.00 46.26 3.07
4932 6426 9.705290 TGCTATTAGCGAGATTTTATACATCAA 57.295 29.630 10.94 0.00 46.26 2.57
4952 6446 9.722056 ACATCAATTTATTTAGCGAGACAATTC 57.278 29.630 0.00 0.00 0.00 2.17
4953 6447 9.941664 CATCAATTTATTTAGCGAGACAATTCT 57.058 29.630 0.00 0.00 33.37 2.40
4967 6461 7.350110 GAGACAATTCTCAGAATGCTATAGC 57.650 40.000 18.18 18.18 46.84 2.97
4968 6462 5.925397 AGACAATTCTCAGAATGCTATAGCG 59.075 40.000 19.55 5.29 45.83 4.26
4969 6463 4.450419 ACAATTCTCAGAATGCTATAGCGC 59.550 41.667 19.55 11.42 45.83 5.92
4970 6464 2.338140 TCTCAGAATGCTATAGCGCG 57.662 50.000 19.55 0.00 45.83 6.86
4971 6465 0.712775 CTCAGAATGCTATAGCGCGC 59.287 55.000 26.66 26.66 45.83 6.86
4972 6466 0.315251 TCAGAATGCTATAGCGCGCT 59.685 50.000 38.01 38.01 45.83 5.92
4973 6467 1.539827 TCAGAATGCTATAGCGCGCTA 59.460 47.619 39.72 39.72 45.83 4.26
4974 6468 2.164422 TCAGAATGCTATAGCGCGCTAT 59.836 45.455 44.16 44.16 45.83 2.97
4975 6469 2.926200 CAGAATGCTATAGCGCGCTATT 59.074 45.455 46.76 34.91 45.83 1.73
4976 6470 3.369147 CAGAATGCTATAGCGCGCTATTT 59.631 43.478 46.76 36.59 45.83 1.40
4977 6471 3.997021 AGAATGCTATAGCGCGCTATTTT 59.003 39.130 46.76 34.49 45.83 1.82
4978 6472 4.452455 AGAATGCTATAGCGCGCTATTTTT 59.548 37.500 46.76 34.21 45.83 1.94
5048 6542 5.633830 AATTGTCATCTCGAAAGCAACAT 57.366 34.783 0.00 0.00 0.00 2.71
5105 6602 2.224378 CCAGCTGGAACTCTTCTTGACA 60.224 50.000 29.88 0.00 37.39 3.58
5162 6659 9.976511 AAATTGATTGCTTGAGTATGGAATATG 57.023 29.630 0.00 0.00 0.00 1.78
5168 6665 6.594744 TGCTTGAGTATGGAATATGTGACAT 58.405 36.000 2.65 2.65 0.00 3.06
5193 6690 8.534954 TCACCTAGAATACAGTTACAAGCTAT 57.465 34.615 0.00 0.00 0.00 2.97
5397 7368 7.741027 ACATGAAGGACATAAATATGCAGAG 57.259 36.000 0.00 0.00 37.46 3.35
5973 8155 7.624360 TTGCTATTTTCTTATTGATGGTCGT 57.376 32.000 0.00 0.00 0.00 4.34
7209 9395 5.105473 GCCCTATACGCTTAGGTTATCATCA 60.105 44.000 9.67 0.00 37.62 3.07
7454 9642 7.522542 AGGAGAATGTAGATTCTGTAGCTAGA 58.477 38.462 19.08 0.00 47.00 2.43
7582 9774 3.069729 ACTTGAGACTGAAAGCCGTTAGT 59.930 43.478 0.00 0.00 37.60 2.24
7600 9792 7.520937 GCCGTTAGTCCTTTTAATTTTCTGTCA 60.521 37.037 0.00 0.00 0.00 3.58
7773 9965 9.748708 ACAATATAATTAATTGTGCATGGTCAC 57.251 29.630 11.05 0.00 43.96 3.67
7853 10045 7.988028 AGATAATTAGCCTGTTAAACTCCAGAC 59.012 37.037 0.00 0.00 0.00 3.51
7875 10067 8.080417 CAGACATGACAGATTCAAATTGTTCTT 58.920 33.333 0.00 0.00 37.92 2.52
8255 10456 3.644966 TGGATTACAAAGCCCTCGAAT 57.355 42.857 0.00 0.00 35.65 3.34
8468 10675 5.843019 AAACTTTCCTGATAGTCCAAGGA 57.157 39.130 0.00 0.00 0.00 3.36
8469 10676 6.394345 AAACTTTCCTGATAGTCCAAGGAT 57.606 37.500 0.00 0.00 0.00 3.24
8504 10712 3.906720 ATCTTCCTACTAGCCGCAAAA 57.093 42.857 0.00 0.00 0.00 2.44
8505 10713 3.906720 TCTTCCTACTAGCCGCAAAAT 57.093 42.857 0.00 0.00 0.00 1.82
8506 10714 3.531538 TCTTCCTACTAGCCGCAAAATG 58.468 45.455 0.00 0.00 0.00 2.32
8508 10716 3.620427 TCCTACTAGCCGCAAAATGAA 57.380 42.857 0.00 0.00 0.00 2.57
8509 10717 3.531538 TCCTACTAGCCGCAAAATGAAG 58.468 45.455 0.00 0.00 0.00 3.02
8511 10719 0.811281 ACTAGCCGCAAAATGAAGCC 59.189 50.000 0.00 0.00 0.00 4.35
8513 10721 0.810648 TAGCCGCAAAATGAAGCCAG 59.189 50.000 0.00 0.00 0.00 4.85
8514 10722 0.895100 AGCCGCAAAATGAAGCCAGA 60.895 50.000 0.00 0.00 0.00 3.86
8515 10723 0.457337 GCCGCAAAATGAAGCCAGAG 60.457 55.000 0.00 0.00 0.00 3.35
8516 10724 1.167851 CCGCAAAATGAAGCCAGAGA 58.832 50.000 0.00 0.00 0.00 3.10
8517 10725 1.131883 CCGCAAAATGAAGCCAGAGAG 59.868 52.381 0.00 0.00 0.00 3.20
8593 10801 1.375140 TGCAGCCAAGAGAAGAGCG 60.375 57.895 0.00 0.00 0.00 5.03
8616 10824 1.374190 CTTCAGCCTGCAGAGGTGT 59.626 57.895 24.23 1.94 42.15 4.16
8617 10825 0.610174 CTTCAGCCTGCAGAGGTGTA 59.390 55.000 24.23 17.85 42.15 2.90
8630 10838 4.511826 GCAGAGGTGTATACTTGTAATGGC 59.488 45.833 4.17 0.00 0.00 4.40
8639 10847 1.073284 ACTTGTAATGGCGGTGGAAGT 59.927 47.619 0.00 0.00 0.00 3.01
8670 10878 1.205893 ACGCTGACTTCCTTCTGATCC 59.794 52.381 0.00 0.00 0.00 3.36
8672 10880 2.481104 CGCTGACTTCCTTCTGATCCTC 60.481 54.545 0.00 0.00 0.00 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.513204 CTGATGCAGAGCCCACGG 60.513 66.667 0.00 0.00 32.44 4.94
1 2 2.104859 CACTGATGCAGAGCCCACG 61.105 63.158 0.82 0.00 35.18 4.94
2 3 1.002868 ACACTGATGCAGAGCCCAC 60.003 57.895 0.82 0.00 35.18 4.61
4 5 0.107312 ATCACACTGATGCAGAGCCC 60.107 55.000 0.82 0.00 35.43 5.19
5 6 1.015109 CATCACACTGATGCAGAGCC 58.985 55.000 0.82 0.00 46.37 4.70
17 18 1.131883 GAATGGCTGTCTGCATCACAC 59.868 52.381 3.96 0.00 45.15 3.82
27 28 9.185192 GCACAATAATTAATAAGAATGGCTGTC 57.815 33.333 0.00 0.00 0.00 3.51
50 52 9.303537 TGGTTTACTTTGTTATTTACTTTGCAC 57.696 29.630 0.00 0.00 0.00 4.57
54 56 9.720667 GTCGTGGTTTACTTTGTTATTTACTTT 57.279 29.630 0.00 0.00 0.00 2.66
55 57 8.344831 GGTCGTGGTTTACTTTGTTATTTACTT 58.655 33.333 0.00 0.00 0.00 2.24
60 62 6.696441 TTGGTCGTGGTTTACTTTGTTATT 57.304 33.333 0.00 0.00 0.00 1.40
77 79 4.693283 TCTATCTTGTAATGGCTTGGTCG 58.307 43.478 0.00 0.00 0.00 4.79
136 138 0.728466 CTTCTTGAAAGCGCTGCTGC 60.728 55.000 12.58 5.34 39.62 5.25
137 139 0.109873 CCTTCTTGAAAGCGCTGCTG 60.110 55.000 12.58 4.34 39.62 4.41
139 141 0.593128 TTCCTTCTTGAAAGCGCTGC 59.407 50.000 12.58 7.21 0.00 5.25
142 144 2.467673 CGTTTTTCCTTCTTGAAAGCGC 59.532 45.455 0.00 0.00 35.77 5.92
146 148 4.944930 TGAGGACGTTTTTCCTTCTTGAAA 59.055 37.500 0.00 0.00 46.80 2.69
152 154 2.095212 GGCATGAGGACGTTTTTCCTTC 60.095 50.000 0.00 0.00 46.80 3.46
156 158 2.476185 CGATGGCATGAGGACGTTTTTC 60.476 50.000 3.81 0.00 0.00 2.29
181 183 3.700038 AGGTCCTCTACAATCGTACTTGG 59.300 47.826 0.55 0.00 0.00 3.61
184 186 5.104610 TGTCTAGGTCCTCTACAATCGTACT 60.105 44.000 0.00 0.00 0.00 2.73
198 200 2.973945 ACGAAAGCATTGTCTAGGTCC 58.026 47.619 0.00 0.00 0.00 4.46
199 201 4.451096 TGAAACGAAAGCATTGTCTAGGTC 59.549 41.667 0.00 0.00 0.00 3.85
225 227 6.199342 GCGGCTTTCACAAATGTTTAGTTTTA 59.801 34.615 0.00 0.00 0.00 1.52
226 228 5.006261 GCGGCTTTCACAAATGTTTAGTTTT 59.994 36.000 0.00 0.00 0.00 2.43
230 232 2.656422 CGCGGCTTTCACAAATGTTTAG 59.344 45.455 0.00 0.00 0.00 1.85
239 241 1.954146 GAGTCACGCGGCTTTCACA 60.954 57.895 12.47 0.00 0.00 3.58
240 242 2.853914 GAGTCACGCGGCTTTCAC 59.146 61.111 12.47 0.00 0.00 3.18
241 243 2.733218 CGAGTCACGCGGCTTTCA 60.733 61.111 12.47 0.00 34.51 2.69
260 262 0.738975 TCTTATCTCTCGTGGCGTGG 59.261 55.000 0.00 0.00 0.00 4.94
264 266 1.334599 CGAGCTCTTATCTCTCGTGGC 60.335 57.143 12.85 0.00 43.16 5.01
265 267 2.214347 TCGAGCTCTTATCTCTCGTGG 58.786 52.381 12.85 0.00 46.76 4.94
266 268 2.869801 ACTCGAGCTCTTATCTCTCGTG 59.130 50.000 13.61 10.14 46.76 4.35
267 269 2.869801 CACTCGAGCTCTTATCTCTCGT 59.130 50.000 13.61 0.00 46.76 4.18
272 274 2.685897 GGTGTCACTCGAGCTCTTATCT 59.314 50.000 13.61 0.00 0.00 1.98
273 275 2.423892 TGGTGTCACTCGAGCTCTTATC 59.576 50.000 13.61 0.00 0.00 1.75
275 277 1.905637 TGGTGTCACTCGAGCTCTTA 58.094 50.000 13.61 0.00 0.00 2.10
276 278 1.261480 ATGGTGTCACTCGAGCTCTT 58.739 50.000 13.61 0.00 0.00 2.85
278 280 2.941453 TTATGGTGTCACTCGAGCTC 57.059 50.000 13.61 2.73 0.00 4.09
279 281 3.326747 GTTTTATGGTGTCACTCGAGCT 58.673 45.455 13.61 0.00 0.00 4.09
280 282 2.092211 CGTTTTATGGTGTCACTCGAGC 59.908 50.000 13.61 0.00 0.00 5.03
281 283 2.092211 GCGTTTTATGGTGTCACTCGAG 59.908 50.000 11.84 11.84 0.00 4.04
282 284 2.063266 GCGTTTTATGGTGTCACTCGA 58.937 47.619 2.35 0.00 0.00 4.04
289 291 3.128589 GGACATGATGCGTTTTATGGTGT 59.871 43.478 0.00 0.00 0.00 4.16
301 303 2.348666 GTCGTGTTACTGGACATGATGC 59.651 50.000 0.00 0.00 44.69 3.91
320 322 1.080569 TTCGACGGCCTAAACGGTC 60.081 57.895 0.00 0.00 36.75 4.79
324 326 0.109319 TACGGTTCGACGGCCTAAAC 60.109 55.000 0.00 0.00 38.39 2.01
325 327 0.171007 CTACGGTTCGACGGCCTAAA 59.829 55.000 0.00 0.00 38.39 1.85
343 345 2.184167 CAAAACCGGGCACGTGTCT 61.184 57.895 21.13 0.00 38.78 3.41
346 348 2.025441 CACAAAACCGGGCACGTG 59.975 61.111 12.28 12.28 38.78 4.49
353 355 1.007387 GCTTCTGCCACAAAACCGG 60.007 57.895 0.00 0.00 0.00 5.28
382 384 4.939509 ATGCTTGTATACCGTGTTTGAC 57.060 40.909 0.00 0.00 0.00 3.18
383 385 5.525745 CCATATGCTTGTATACCGTGTTTGA 59.474 40.000 0.00 0.00 0.00 2.69
406 408 8.920509 AAATGCATAAAGGTTTTCGTATAACC 57.079 30.769 0.00 7.65 44.34 2.85
434 441 7.993821 TTTTTGTATTCTGTGCGAAATTTGA 57.006 28.000 0.00 0.00 34.79 2.69
498 509 0.892358 GGTTCGGTTCCCTGGTTTCC 60.892 60.000 0.00 0.00 0.00 3.13
499 510 0.892358 GGGTTCGGTTCCCTGGTTTC 60.892 60.000 0.00 0.00 41.58 2.78
532 543 0.942884 GTTTGCCTTTGCTGCTGCTC 60.943 55.000 17.00 2.00 40.48 4.26
534 545 0.810823 TTGTTTGCCTTTGCTGCTGC 60.811 50.000 8.89 8.89 38.71 5.25
535 546 1.595794 CTTTGTTTGCCTTTGCTGCTG 59.404 47.619 0.00 0.00 38.71 4.41
536 547 1.944032 CTTTGTTTGCCTTTGCTGCT 58.056 45.000 0.00 0.00 38.71 4.24
537 548 0.305617 GCTTTGTTTGCCTTTGCTGC 59.694 50.000 0.00 0.00 38.71 5.25
538 549 1.862827 GAGCTTTGTTTGCCTTTGCTG 59.137 47.619 0.00 0.00 38.71 4.41
539 550 1.536709 CGAGCTTTGTTTGCCTTTGCT 60.537 47.619 0.00 0.00 38.71 3.91
540 551 0.854705 CGAGCTTTGTTTGCCTTTGC 59.145 50.000 0.00 0.00 38.26 3.68
541 552 2.119457 GACGAGCTTTGTTTGCCTTTG 58.881 47.619 0.00 0.00 0.00 2.77
542 553 1.268539 CGACGAGCTTTGTTTGCCTTT 60.269 47.619 0.00 0.00 0.00 3.11
543 554 0.307760 CGACGAGCTTTGTTTGCCTT 59.692 50.000 0.00 0.00 0.00 4.35
544 555 1.507141 CCGACGAGCTTTGTTTGCCT 61.507 55.000 0.00 0.00 0.00 4.75
545 556 1.082104 CCGACGAGCTTTGTTTGCC 60.082 57.895 0.00 0.00 0.00 4.52
546 557 1.725973 GCCGACGAGCTTTGTTTGC 60.726 57.895 0.00 0.00 0.00 3.68
547 558 1.082104 GGCCGACGAGCTTTGTTTG 60.082 57.895 0.00 0.00 0.00 2.93
548 559 3.340789 GGCCGACGAGCTTTGTTT 58.659 55.556 0.00 0.00 0.00 2.83
746 768 3.334054 AAGGGAGTGAGCTGGGGC 61.334 66.667 0.00 0.00 39.06 5.80
748 770 2.674220 GGGAAGGGAGTGAGCTGGG 61.674 68.421 0.00 0.00 0.00 4.45
749 771 1.204113 AAGGGAAGGGAGTGAGCTGG 61.204 60.000 0.00 0.00 0.00 4.85
750 772 0.251634 GAAGGGAAGGGAGTGAGCTG 59.748 60.000 0.00 0.00 0.00 4.24
751 773 0.912006 GGAAGGGAAGGGAGTGAGCT 60.912 60.000 0.00 0.00 0.00 4.09
752 774 1.604915 GGAAGGGAAGGGAGTGAGC 59.395 63.158 0.00 0.00 0.00 4.26
753 775 0.252927 AGGGAAGGGAAGGGAGTGAG 60.253 60.000 0.00 0.00 0.00 3.51
754 776 0.547712 CAGGGAAGGGAAGGGAGTGA 60.548 60.000 0.00 0.00 0.00 3.41
755 777 0.842467 ACAGGGAAGGGAAGGGAGTG 60.842 60.000 0.00 0.00 0.00 3.51
756 778 0.103876 AACAGGGAAGGGAAGGGAGT 60.104 55.000 0.00 0.00 0.00 3.85
757 779 1.076438 AAACAGGGAAGGGAAGGGAG 58.924 55.000 0.00 0.00 0.00 4.30
758 780 2.444033 TAAACAGGGAAGGGAAGGGA 57.556 50.000 0.00 0.00 0.00 4.20
759 781 3.536075 TTTAAACAGGGAAGGGAAGGG 57.464 47.619 0.00 0.00 0.00 3.95
825 852 1.934459 CGAGGGTCTGGGGAGGAGTA 61.934 65.000 0.00 0.00 0.00 2.59
897 924 7.898014 AAAAGAACAGAACTTGGTAGGATTT 57.102 32.000 0.00 0.00 0.00 2.17
933 960 3.953775 CCACCACAGGGAACGCCT 61.954 66.667 0.00 0.00 38.05 5.52
938 965 1.302949 GCTATGCCACCACAGGGAA 59.697 57.895 0.00 0.00 38.05 3.97
942 969 0.679002 AAGCTGCTATGCCACCACAG 60.679 55.000 0.90 0.00 0.00 3.66
945 972 2.048023 GCAAGCTGCTATGCCACCA 61.048 57.895 19.35 0.00 40.96 4.17
996 1023 1.447643 CATCTCCGTCACCATCCCC 59.552 63.158 0.00 0.00 0.00 4.81
1068 1135 1.299773 GCGGAAGAGCTCCATCTCG 60.300 63.158 10.93 14.75 45.74 4.04
1432 1538 7.960861 AGACAGGGATATATTCTTCAGAGGAAT 59.039 37.037 12.16 12.16 37.24 3.01
1436 1547 7.773489 TCAGACAGGGATATATTCTTCAGAG 57.227 40.000 0.00 0.00 0.00 3.35
1465 1580 7.466455 CGCAGTCACATGAGCTTAATAAGAAAT 60.466 37.037 3.88 0.00 0.00 2.17
1467 1582 5.291858 CGCAGTCACATGAGCTTAATAAGAA 59.708 40.000 3.88 0.00 0.00 2.52
1479 1594 0.678950 TCCAGAACGCAGTCACATGA 59.321 50.000 0.00 0.00 45.00 3.07
1488 1603 2.103941 TGGCATGTATATCCAGAACGCA 59.896 45.455 0.00 0.00 0.00 5.24
1490 1605 4.154737 CCATTGGCATGTATATCCAGAACG 59.845 45.833 0.00 0.00 0.00 3.95
1510 1625 4.516698 GCGTTGACATAATCCAATCTCCAT 59.483 41.667 0.00 0.00 0.00 3.41
1585 1988 1.605710 CACTTGGACTGAAGGCAACAG 59.394 52.381 8.89 8.89 40.68 3.16
1594 1997 2.088104 ACTCTGACCACTTGGACTGA 57.912 50.000 1.14 4.80 38.94 3.41
1595 1998 2.103094 TGAACTCTGACCACTTGGACTG 59.897 50.000 1.14 0.11 38.94 3.51
1596 1999 2.398588 TGAACTCTGACCACTTGGACT 58.601 47.619 1.14 0.00 38.94 3.85
1597 2000 2.910688 TGAACTCTGACCACTTGGAC 57.089 50.000 1.14 0.00 38.94 4.02
1778 2210 9.778993 CTACATGCATATAAAAATCTATGGCAC 57.221 33.333 0.00 0.00 30.57 5.01
1811 2245 1.460305 GGAGCCCAGGCATCCTCTA 60.460 63.158 12.03 0.00 44.88 2.43
1977 2565 6.096846 ACTGAATGTTAAGAGGCAACAAAAGT 59.903 34.615 0.00 0.00 39.22 2.66
1994 2582 0.606401 CGGCCACTTGGACTGAATGT 60.606 55.000 2.24 0.00 42.58 2.71
2004 2592 0.606401 ACATGAACTCCGGCCACTTG 60.606 55.000 2.24 0.00 0.00 3.16
2006 2594 0.321653 GAACATGAACTCCGGCCACT 60.322 55.000 2.24 0.00 0.00 4.00
2007 2595 0.605319 TGAACATGAACTCCGGCCAC 60.605 55.000 2.24 0.00 0.00 5.01
2008 2596 0.327924 ATGAACATGAACTCCGGCCA 59.672 50.000 2.24 0.00 0.00 5.36
2010 2598 1.667724 CAGATGAACATGAACTCCGGC 59.332 52.381 0.00 0.00 0.00 6.13
2011 2599 3.193263 CTCAGATGAACATGAACTCCGG 58.807 50.000 0.00 0.00 0.00 5.14
2012 2600 3.193263 CCTCAGATGAACATGAACTCCG 58.807 50.000 0.00 0.00 0.00 4.63
2013 2601 4.213564 ACCTCAGATGAACATGAACTCC 57.786 45.455 0.00 0.00 0.00 3.85
2036 2624 4.759693 CCAATACAAGCTCAAACAGTACCA 59.240 41.667 0.00 0.00 0.00 3.25
2037 2625 4.156008 CCCAATACAAGCTCAAACAGTACC 59.844 45.833 0.00 0.00 0.00 3.34
2038 2626 4.156008 CCCCAATACAAGCTCAAACAGTAC 59.844 45.833 0.00 0.00 0.00 2.73
2039 2627 4.202524 ACCCCAATACAAGCTCAAACAGTA 60.203 41.667 0.00 0.00 0.00 2.74
2040 2628 3.157087 CCCCAATACAAGCTCAAACAGT 58.843 45.455 0.00 0.00 0.00 3.55
2041 2629 3.157087 ACCCCAATACAAGCTCAAACAG 58.843 45.455 0.00 0.00 0.00 3.16
2042 2630 3.237268 ACCCCAATACAAGCTCAAACA 57.763 42.857 0.00 0.00 0.00 2.83
2043 2631 6.515035 GCATATACCCCAATACAAGCTCAAAC 60.515 42.308 0.00 0.00 0.00 2.93
2044 2632 5.534654 GCATATACCCCAATACAAGCTCAAA 59.465 40.000 0.00 0.00 0.00 2.69
2045 2633 5.070001 GCATATACCCCAATACAAGCTCAA 58.930 41.667 0.00 0.00 0.00 3.02
2046 2634 4.350816 AGCATATACCCCAATACAAGCTCA 59.649 41.667 0.00 0.00 0.00 4.26
2047 2635 4.911390 AGCATATACCCCAATACAAGCTC 58.089 43.478 0.00 0.00 0.00 4.09
2048 2636 5.072741 CAAGCATATACCCCAATACAAGCT 58.927 41.667 0.00 0.00 0.00 3.74
2049 2637 4.827284 ACAAGCATATACCCCAATACAAGC 59.173 41.667 0.00 0.00 0.00 4.01
2050 2638 5.827797 ACACAAGCATATACCCCAATACAAG 59.172 40.000 0.00 0.00 0.00 3.16
2051 2639 5.761205 ACACAAGCATATACCCCAATACAA 58.239 37.500 0.00 0.00 0.00 2.41
2052 2640 5.373222 GACACAAGCATATACCCCAATACA 58.627 41.667 0.00 0.00 0.00 2.29
2053 2641 4.451096 CGACACAAGCATATACCCCAATAC 59.549 45.833 0.00 0.00 0.00 1.89
2054 2642 4.637276 CGACACAAGCATATACCCCAATA 58.363 43.478 0.00 0.00 0.00 1.90
2055 2643 3.476552 CGACACAAGCATATACCCCAAT 58.523 45.455 0.00 0.00 0.00 3.16
2071 2659 2.475200 AACAAAAAGAGCAGCGACAC 57.525 45.000 0.00 0.00 0.00 3.67
2110 2698 7.414873 GCTGGCATATATCACCATCATTAACAG 60.415 40.741 4.77 0.00 31.79 3.16
2116 2707 4.524053 CAGCTGGCATATATCACCATCAT 58.476 43.478 5.57 0.00 31.79 2.45
2158 2749 7.346751 ACTATCAGTGACACCAAAACAATTT 57.653 32.000 0.84 0.00 0.00 1.82
2159 2750 6.959639 ACTATCAGTGACACCAAAACAATT 57.040 33.333 0.84 0.00 0.00 2.32
2208 2799 9.833894 CGAACAATTCAATTAAGAAACAAACAG 57.166 29.630 0.00 0.00 0.00 3.16
2209 2800 8.812329 CCGAACAATTCAATTAAGAAACAAACA 58.188 29.630 0.00 0.00 0.00 2.83
2210 2801 8.272866 CCCGAACAATTCAATTAAGAAACAAAC 58.727 33.333 0.00 0.00 0.00 2.93
2211 2802 7.982354 ACCCGAACAATTCAATTAAGAAACAAA 59.018 29.630 0.00 0.00 0.00 2.83
2212 2803 7.436673 CACCCGAACAATTCAATTAAGAAACAA 59.563 33.333 0.00 0.00 0.00 2.83
2213 2804 6.920758 CACCCGAACAATTCAATTAAGAAACA 59.079 34.615 0.00 0.00 0.00 2.83
2214 2805 6.921307 ACACCCGAACAATTCAATTAAGAAAC 59.079 34.615 0.00 0.00 0.00 2.78
2215 2806 7.045126 ACACCCGAACAATTCAATTAAGAAA 57.955 32.000 0.00 0.00 0.00 2.52
2216 2807 6.642707 ACACCCGAACAATTCAATTAAGAA 57.357 33.333 0.00 0.00 0.00 2.52
2217 2808 6.442952 CAACACCCGAACAATTCAATTAAGA 58.557 36.000 0.00 0.00 0.00 2.10
2218 2809 5.118510 GCAACACCCGAACAATTCAATTAAG 59.881 40.000 0.00 0.00 0.00 1.85
2219 2810 4.985409 GCAACACCCGAACAATTCAATTAA 59.015 37.500 0.00 0.00 0.00 1.40
2220 2811 4.279671 AGCAACACCCGAACAATTCAATTA 59.720 37.500 0.00 0.00 0.00 1.40
2221 2812 3.069443 AGCAACACCCGAACAATTCAATT 59.931 39.130 0.00 0.00 0.00 2.32
2222 2813 2.627699 AGCAACACCCGAACAATTCAAT 59.372 40.909 0.00 0.00 0.00 2.57
2223 2814 2.028130 AGCAACACCCGAACAATTCAA 58.972 42.857 0.00 0.00 0.00 2.69
2224 2815 1.336440 CAGCAACACCCGAACAATTCA 59.664 47.619 0.00 0.00 0.00 2.57
2225 2816 1.606668 TCAGCAACACCCGAACAATTC 59.393 47.619 0.00 0.00 0.00 2.17
2226 2817 1.686355 TCAGCAACACCCGAACAATT 58.314 45.000 0.00 0.00 0.00 2.32
2227 2818 1.909700 ATCAGCAACACCCGAACAAT 58.090 45.000 0.00 0.00 0.00 2.71
2228 2819 1.336440 CAATCAGCAACACCCGAACAA 59.664 47.619 0.00 0.00 0.00 2.83
2229 2820 0.950836 CAATCAGCAACACCCGAACA 59.049 50.000 0.00 0.00 0.00 3.18
2230 2821 0.951558 ACAATCAGCAACACCCGAAC 59.048 50.000 0.00 0.00 0.00 3.95
2231 2822 0.950836 CACAATCAGCAACACCCGAA 59.049 50.000 0.00 0.00 0.00 4.30
2232 2823 0.888736 CCACAATCAGCAACACCCGA 60.889 55.000 0.00 0.00 0.00 5.14
2233 2824 1.172180 ACCACAATCAGCAACACCCG 61.172 55.000 0.00 0.00 0.00 5.28
2234 2825 1.539827 GTACCACAATCAGCAACACCC 59.460 52.381 0.00 0.00 0.00 4.61
2235 2826 2.504367 AGTACCACAATCAGCAACACC 58.496 47.619 0.00 0.00 0.00 4.16
2236 2827 3.125316 GCTAGTACCACAATCAGCAACAC 59.875 47.826 0.00 0.00 0.00 3.32
2237 2828 3.007940 AGCTAGTACCACAATCAGCAACA 59.992 43.478 0.00 0.00 0.00 3.33
2238 2829 3.372206 CAGCTAGTACCACAATCAGCAAC 59.628 47.826 0.00 0.00 0.00 4.17
2239 2830 3.007940 ACAGCTAGTACCACAATCAGCAA 59.992 43.478 0.00 0.00 0.00 3.91
2240 2831 2.567169 ACAGCTAGTACCACAATCAGCA 59.433 45.455 0.00 0.00 0.00 4.41
2241 2832 3.252974 ACAGCTAGTACCACAATCAGC 57.747 47.619 0.00 0.00 0.00 4.26
2242 2833 9.547753 AAAATATACAGCTAGTACCACAATCAG 57.452 33.333 0.00 0.00 35.05 2.90
2243 2834 9.899661 AAAAATATACAGCTAGTACCACAATCA 57.100 29.630 0.00 0.00 35.05 2.57
2278 2869 6.725364 ACTTCATCCTCTAAACAATCCACAT 58.275 36.000 0.00 0.00 0.00 3.21
2285 2876 9.712305 CTTCTCTTAACTTCATCCTCTAAACAA 57.288 33.333 0.00 0.00 0.00 2.83
2293 2884 6.688073 TGAACCTTCTCTTAACTTCATCCT 57.312 37.500 0.00 0.00 0.00 3.24
2303 2894 3.307059 GCCAGAGCTTGAACCTTCTCTTA 60.307 47.826 0.00 0.00 33.99 2.10
2304 2895 2.551938 GCCAGAGCTTGAACCTTCTCTT 60.552 50.000 0.00 0.00 33.99 2.85
2305 2896 1.003003 GCCAGAGCTTGAACCTTCTCT 59.997 52.381 0.00 0.00 36.43 3.10
2330 2922 6.012945 AGGCCCAAAACATAACAACCATAATT 60.013 34.615 0.00 0.00 0.00 1.40
2337 2929 3.744238 ACAGGCCCAAAACATAACAAC 57.256 42.857 0.00 0.00 0.00 3.32
2361 2953 6.379988 GGGTCACCATACCAGAAATACATTTT 59.620 38.462 0.00 0.00 41.67 1.82
2382 2974 3.202906 GGAAAACCAAGCTTTTTGGGTC 58.797 45.455 6.65 1.82 38.86 4.46
2384 2976 3.205338 CTGGAAAACCAAGCTTTTTGGG 58.795 45.455 7.81 3.54 43.71 4.12
2385 2977 2.613595 GCTGGAAAACCAAGCTTTTTGG 59.386 45.455 0.00 0.00 44.91 3.28
2423 3015 6.183360 TGCTTTTGGCTCTAAATAGCTCATTC 60.183 38.462 0.00 0.00 42.37 2.67
2427 3019 5.764487 ATGCTTTTGGCTCTAAATAGCTC 57.236 39.130 0.00 0.00 42.37 4.09
2428 3020 7.286316 ACATAATGCTTTTGGCTCTAAATAGCT 59.714 33.333 0.00 0.00 42.37 3.32
2429 3021 7.428826 ACATAATGCTTTTGGCTCTAAATAGC 58.571 34.615 0.00 0.00 42.39 2.97
2459 3161 3.256631 ACAACATCCAACAAGATGAAGGC 59.743 43.478 8.44 0.00 45.43 4.35
2461 3163 6.969366 TGTAACAACATCCAACAAGATGAAG 58.031 36.000 8.44 3.24 45.43 3.02
2500 3202 5.188434 CAACATATGAGGAAAGGAAGCAGA 58.812 41.667 10.38 0.00 0.00 4.26
2539 3241 0.460459 TGTTCAACCAGTTCGCACGA 60.460 50.000 0.00 0.00 0.00 4.35
2545 3248 5.007724 CAGTAACTTCCTGTTCAACCAGTTC 59.992 44.000 0.00 0.00 39.89 3.01
2570 3273 8.629158 TCTTATTGAACACATGCAAACTAAGTT 58.371 29.630 0.00 0.00 0.00 2.66
2577 3280 8.959548 AGATGTATCTTATTGAACACATGCAAA 58.040 29.630 0.00 0.00 31.97 3.68
2614 3317 5.304357 CCTTTGTGGGACCAGACTAAAAATT 59.696 40.000 0.00 0.00 0.00 1.82
2629 3332 5.545063 ATTGGTAGAAAAACCTTTGTGGG 57.455 39.130 0.00 0.00 40.44 4.61
2646 3349 8.034804 GGCAGAAAACTTTTGTATCATATTGGT 58.965 33.333 0.00 0.00 0.00 3.67
2647 3350 8.034215 TGGCAGAAAACTTTTGTATCATATTGG 58.966 33.333 0.00 0.00 0.00 3.16
2648 3351 8.984891 TGGCAGAAAACTTTTGTATCATATTG 57.015 30.769 0.00 0.00 0.00 1.90
2723 3430 6.806668 TTCAGATACATCACTCATGGGTAA 57.193 37.500 0.00 0.00 36.72 2.85
2727 3434 9.987272 TTATACTTTCAGATACATCACTCATGG 57.013 33.333 0.00 0.00 36.72 3.66
2754 3461 5.984695 ACATTGAGTAGCTAGTCACAGAA 57.015 39.130 27.30 15.37 35.52 3.02
2761 3468 4.621747 GCACCAGAACATTGAGTAGCTAGT 60.622 45.833 0.00 0.00 0.00 2.57
2762 3469 3.868077 GCACCAGAACATTGAGTAGCTAG 59.132 47.826 0.00 0.00 0.00 3.42
2763 3470 3.260632 TGCACCAGAACATTGAGTAGCTA 59.739 43.478 0.00 0.00 0.00 3.32
2764 3471 2.038952 TGCACCAGAACATTGAGTAGCT 59.961 45.455 0.00 0.00 0.00 3.32
2765 3472 2.160417 GTGCACCAGAACATTGAGTAGC 59.840 50.000 5.22 0.00 0.00 3.58
2766 3473 3.668447 AGTGCACCAGAACATTGAGTAG 58.332 45.455 14.63 0.00 0.00 2.57
2767 3474 3.769739 AGTGCACCAGAACATTGAGTA 57.230 42.857 14.63 0.00 0.00 2.59
2768 3475 2.645838 AGTGCACCAGAACATTGAGT 57.354 45.000 14.63 0.00 0.00 3.41
2769 3476 3.930336 TCTAGTGCACCAGAACATTGAG 58.070 45.455 12.84 0.00 0.00 3.02
2770 3477 4.350368 TTCTAGTGCACCAGAACATTGA 57.650 40.909 21.63 0.97 0.00 2.57
2771 3478 6.741992 TTATTCTAGTGCACCAGAACATTG 57.258 37.500 26.58 2.75 33.78 2.82
2772 3479 6.183360 GCATTATTCTAGTGCACCAGAACATT 60.183 38.462 26.58 15.42 40.64 2.71
2773 3480 5.297776 GCATTATTCTAGTGCACCAGAACAT 59.702 40.000 26.58 18.97 40.64 2.71
2774 3481 4.635765 GCATTATTCTAGTGCACCAGAACA 59.364 41.667 26.58 15.39 40.64 3.18
2775 3482 4.260375 CGCATTATTCTAGTGCACCAGAAC 60.260 45.833 26.58 14.29 40.94 3.01
2776 3483 3.871006 CGCATTATTCTAGTGCACCAGAA 59.129 43.478 26.30 26.30 40.94 3.02
2777 3484 3.457234 CGCATTATTCTAGTGCACCAGA 58.543 45.455 14.63 12.79 40.94 3.86
2778 3485 2.545526 CCGCATTATTCTAGTGCACCAG 59.454 50.000 14.63 10.07 40.94 4.00
2779 3486 2.093181 ACCGCATTATTCTAGTGCACCA 60.093 45.455 14.63 0.00 40.94 4.17
2780 3487 2.561569 ACCGCATTATTCTAGTGCACC 58.438 47.619 14.63 0.00 40.94 5.01
2781 3488 4.988540 TCATACCGCATTATTCTAGTGCAC 59.011 41.667 9.40 9.40 40.94 4.57
2782 3489 5.208463 TCATACCGCATTATTCTAGTGCA 57.792 39.130 3.52 0.00 40.94 4.57
2783 3490 7.827819 TTATCATACCGCATTATTCTAGTGC 57.172 36.000 0.00 0.00 37.96 4.40
2882 3591 4.370049 TGTGTAAATGCAATGCCATATGC 58.630 39.130 1.53 5.31 42.86 3.14
2883 3592 7.868922 AGTATTGTGTAAATGCAATGCCATATG 59.131 33.333 1.53 0.00 38.07 1.78
2921 3639 8.792633 CATAAGAAACCTGACCTAAATGTTCAA 58.207 33.333 0.00 0.00 0.00 2.69
2954 3672 8.084985 TCTACATAAAGATTATGACACCCACA 57.915 34.615 15.07 0.00 0.00 4.17
2962 3680 9.935241 GGATTGAGCTCTACATAAAGATTATGA 57.065 33.333 16.19 1.33 0.00 2.15
2973 3691 4.442192 GGAAAGACGGATTGAGCTCTACAT 60.442 45.833 16.19 4.27 0.00 2.29
2981 3699 3.931578 ACTGAAGGAAAGACGGATTGAG 58.068 45.455 0.00 0.00 0.00 3.02
3087 3806 2.824341 TCTAGAAGAACCCGACAAGTCC 59.176 50.000 0.00 0.00 0.00 3.85
3191 3913 6.993175 ATGTATGTGTCGACTCATTATTCG 57.007 37.500 31.18 0.00 36.55 3.34
3440 4162 3.266510 GGTCAGCATGTCCATTGACTA 57.733 47.619 10.38 0.00 44.07 2.59
3717 4442 1.558294 GAAGATAAACTCCCACCGGGT 59.442 52.381 6.32 0.00 44.74 5.28
3748 4473 5.120830 CACTGTAGTTTGCAAGGTTAGCTAG 59.879 44.000 0.00 0.00 0.00 3.42
4171 4905 3.399440 TGGAACCAAATTGGCATTCAC 57.601 42.857 12.67 4.80 42.67 3.18
4800 6294 4.196971 AGCACCGATAATAAACAGGTTCC 58.803 43.478 0.00 0.00 32.04 3.62
4837 6331 7.084486 GCTATTTTGCTATAGCCGCTATTTTT 58.916 34.615 21.84 0.00 44.62 1.94
4839 6333 5.163854 CGCTATTTTGCTATAGCCGCTATTT 60.164 40.000 21.84 0.00 46.60 1.40
4841 6335 3.865745 CGCTATTTTGCTATAGCCGCTAT 59.134 43.478 21.84 16.97 46.60 2.97
4843 6337 2.069273 CGCTATTTTGCTATAGCCGCT 58.931 47.619 21.84 0.00 46.60 5.52
4844 6338 1.798813 ACGCTATTTTGCTATAGCCGC 59.201 47.619 21.84 12.64 46.60 6.53
4846 6340 2.412089 CCGACGCTATTTTGCTATAGCC 59.588 50.000 21.84 4.84 46.60 3.93
4847 6341 2.159827 GCCGACGCTATTTTGCTATAGC 60.160 50.000 18.18 18.18 46.10 2.97
4848 6342 2.412089 GGCCGACGCTATTTTGCTATAG 59.588 50.000 0.00 0.00 34.44 1.31
4849 6343 2.036733 AGGCCGACGCTATTTTGCTATA 59.963 45.455 0.00 0.00 34.44 1.31
4850 6344 1.202651 AGGCCGACGCTATTTTGCTAT 60.203 47.619 0.00 0.00 34.44 2.97
4851 6345 0.177141 AGGCCGACGCTATTTTGCTA 59.823 50.000 0.00 0.00 34.44 3.49
4852 6346 0.676782 AAGGCCGACGCTATTTTGCT 60.677 50.000 0.00 0.00 34.44 3.91
4853 6347 1.011333 TAAGGCCGACGCTATTTTGC 58.989 50.000 0.00 0.00 34.44 3.68
4854 6348 3.750639 TTTAAGGCCGACGCTATTTTG 57.249 42.857 0.00 0.00 34.44 2.44
4855 6349 3.502979 TGTTTTAAGGCCGACGCTATTTT 59.497 39.130 0.00 0.00 34.44 1.82
4856 6350 3.075884 TGTTTTAAGGCCGACGCTATTT 58.924 40.909 0.00 0.00 34.44 1.40
4857 6351 2.417586 GTGTTTTAAGGCCGACGCTATT 59.582 45.455 0.00 0.00 34.44 1.73
4858 6352 2.004733 GTGTTTTAAGGCCGACGCTAT 58.995 47.619 0.00 0.00 34.44 2.97
4859 6353 1.431496 GTGTTTTAAGGCCGACGCTA 58.569 50.000 0.00 0.00 34.44 4.26
4860 6354 1.562575 CGTGTTTTAAGGCCGACGCT 61.563 55.000 0.00 0.00 34.44 5.07
4861 6355 1.154543 CGTGTTTTAAGGCCGACGC 60.155 57.895 0.00 0.00 0.00 5.19
4862 6356 1.154543 GCGTGTTTTAAGGCCGACG 60.155 57.895 0.00 0.00 0.00 5.12
4863 6357 1.431496 TAGCGTGTTTTAAGGCCGAC 58.569 50.000 0.00 0.00 0.00 4.79
4864 6358 2.389962 ATAGCGTGTTTTAAGGCCGA 57.610 45.000 0.00 0.00 0.00 5.54
4865 6359 3.619929 ACTAATAGCGTGTTTTAAGGCCG 59.380 43.478 0.00 0.00 0.00 6.13
4866 6360 4.393990 ACACTAATAGCGTGTTTTAAGGCC 59.606 41.667 0.00 0.00 42.56 5.19
4867 6361 5.321516 CACACTAATAGCGTGTTTTAAGGC 58.678 41.667 0.55 0.00 42.56 4.35
4868 6362 5.121768 AGCACACTAATAGCGTGTTTTAAGG 59.878 40.000 9.78 0.00 42.56 2.69
4869 6363 6.165659 AGCACACTAATAGCGTGTTTTAAG 57.834 37.500 9.78 0.00 42.56 1.85
4870 6364 6.183360 CGTAGCACACTAATAGCGTGTTTTAA 60.183 38.462 9.78 0.00 42.56 1.52
4871 6365 5.286797 CGTAGCACACTAATAGCGTGTTTTA 59.713 40.000 9.78 0.00 42.56 1.52
4872 6366 4.090930 CGTAGCACACTAATAGCGTGTTTT 59.909 41.667 9.78 0.53 42.56 2.43
4873 6367 3.611113 CGTAGCACACTAATAGCGTGTTT 59.389 43.478 9.78 2.61 42.56 2.83
4874 6368 3.176708 CGTAGCACACTAATAGCGTGTT 58.823 45.455 9.78 6.65 42.56 3.32
4875 6369 2.793933 CGTAGCACACTAATAGCGTGT 58.206 47.619 9.78 0.00 45.80 4.49
4890 6384 2.796383 ATAGCATGCTATAGCGCGTAGC 60.796 50.000 33.73 29.19 43.39 3.58
4891 6385 2.544480 TAGCATGCTATAGCGCGTAG 57.456 50.000 23.52 15.70 45.83 3.51
4892 6386 3.503827 AATAGCATGCTATAGCGCGTA 57.496 42.857 34.51 11.84 45.83 4.42
4893 6387 2.370281 AATAGCATGCTATAGCGCGT 57.630 45.000 34.51 18.81 45.83 6.01
4894 6388 2.217393 GCTAATAGCATGCTATAGCGCG 59.783 50.000 34.51 22.22 42.14 6.86
4895 6389 2.217393 CGCTAATAGCATGCTATAGCGC 59.783 50.000 40.06 34.69 43.21 5.92
4896 6390 3.695816 TCGCTAATAGCATGCTATAGCG 58.304 45.455 41.63 41.63 45.97 4.26
4897 6391 4.926244 TCTCGCTAATAGCATGCTATAGC 58.074 43.478 34.51 33.34 42.58 2.97
4898 6392 8.417780 AAAATCTCGCTAATAGCATGCTATAG 57.582 34.615 34.51 28.71 42.58 1.31
4900 6394 8.954950 ATAAAATCTCGCTAATAGCATGCTAT 57.045 30.769 30.43 30.43 42.58 2.97
4901 6395 9.302345 GTATAAAATCTCGCTAATAGCATGCTA 57.698 33.333 28.72 28.72 42.58 3.49
4902 6396 7.819415 TGTATAAAATCTCGCTAATAGCATGCT 59.181 33.333 25.99 25.99 42.58 3.79
4903 6397 7.963981 TGTATAAAATCTCGCTAATAGCATGC 58.036 34.615 10.51 10.51 42.58 4.06
4905 6399 9.875691 TGATGTATAAAATCTCGCTAATAGCAT 57.124 29.630 13.15 0.00 42.58 3.79
4906 6400 9.705290 TTGATGTATAAAATCTCGCTAATAGCA 57.295 29.630 13.15 0.00 42.58 3.49
4926 6420 9.722056 GAATTGTCTCGCTAAATAAATTGATGT 57.278 29.630 0.00 0.00 0.00 3.06
4927 6421 9.941664 AGAATTGTCTCGCTAAATAAATTGATG 57.058 29.630 0.00 0.00 0.00 3.07
4941 6435 9.191817 GCTATAGCATTCTGAGAATTGTCTCGC 62.192 44.444 20.01 4.96 45.98 5.03
4942 6436 6.089283 GCTATAGCATTCTGAGAATTGTCTCG 59.911 42.308 20.01 0.00 45.98 4.04
4943 6437 6.089283 CGCTATAGCATTCTGAGAATTGTCTC 59.911 42.308 23.99 0.00 45.10 3.36
4944 6438 5.925397 CGCTATAGCATTCTGAGAATTGTCT 59.075 40.000 23.99 5.88 42.21 3.41
4945 6439 5.389307 GCGCTATAGCATTCTGAGAATTGTC 60.389 44.000 23.99 0.00 42.21 3.18
4946 6440 4.450419 GCGCTATAGCATTCTGAGAATTGT 59.550 41.667 23.99 0.00 42.21 2.71
4947 6441 4.433936 CGCGCTATAGCATTCTGAGAATTG 60.434 45.833 23.99 2.93 42.21 2.32
4948 6442 3.677121 CGCGCTATAGCATTCTGAGAATT 59.323 43.478 23.99 0.00 42.21 2.17
4949 6443 3.249091 CGCGCTATAGCATTCTGAGAAT 58.751 45.455 23.99 0.97 42.21 2.40
4950 6444 2.666026 CGCGCTATAGCATTCTGAGAA 58.334 47.619 23.99 0.00 42.21 2.87
4951 6445 1.667177 GCGCGCTATAGCATTCTGAGA 60.667 52.381 26.67 0.00 42.21 3.27
4952 6446 0.712775 GCGCGCTATAGCATTCTGAG 59.287 55.000 26.67 10.23 42.21 3.35
4953 6447 0.315251 AGCGCGCTATAGCATTCTGA 59.685 50.000 35.79 0.00 42.21 3.27
4954 6448 1.982612 TAGCGCGCTATAGCATTCTG 58.017 50.000 35.48 8.71 42.21 3.02
4955 6449 2.949451 ATAGCGCGCTATAGCATTCT 57.051 45.000 43.42 23.99 42.21 2.40
4956 6450 3.999229 AAATAGCGCGCTATAGCATTC 57.001 42.857 43.81 9.48 42.21 2.67
4957 6451 4.749245 AAAAATAGCGCGCTATAGCATT 57.251 36.364 43.81 33.15 42.21 3.56
4976 6470 7.931578 TTTTCTAGTCTTGACCACTCAAAAA 57.068 32.000 0.00 0.00 35.92 1.94
4977 6471 9.793259 ATATTTTCTAGTCTTGACCACTCAAAA 57.207 29.630 0.00 0.00 35.92 2.44
4978 6472 9.436957 GATATTTTCTAGTCTTGACCACTCAAA 57.563 33.333 0.00 0.00 35.92 2.69
4979 6473 8.041323 GGATATTTTCTAGTCTTGACCACTCAA 58.959 37.037 0.00 0.00 35.04 3.02
4980 6474 7.364762 GGGATATTTTCTAGTCTTGACCACTCA 60.365 40.741 0.00 0.00 0.00 3.41
4981 6475 6.987404 GGGATATTTTCTAGTCTTGACCACTC 59.013 42.308 0.00 0.00 0.00 3.51
4982 6476 6.674419 AGGGATATTTTCTAGTCTTGACCACT 59.326 38.462 0.00 0.00 0.00 4.00
4983 6477 6.763610 CAGGGATATTTTCTAGTCTTGACCAC 59.236 42.308 0.00 0.00 0.00 4.16
4984 6478 6.443849 ACAGGGATATTTTCTAGTCTTGACCA 59.556 38.462 0.00 0.00 0.00 4.02
4985 6479 6.890293 ACAGGGATATTTTCTAGTCTTGACC 58.110 40.000 0.00 0.00 0.00 4.02
5037 6531 3.329386 TCAGAGGAGAATGTTGCTTTCG 58.671 45.455 0.00 0.00 0.00 3.46
5043 6537 3.436015 CAGCAGTTCAGAGGAGAATGTTG 59.564 47.826 0.00 0.00 0.00 3.33
5048 6542 3.501349 AGTACAGCAGTTCAGAGGAGAA 58.499 45.455 0.00 0.00 0.00 2.87
5105 6602 6.757237 TGTTTGAATATCATGGTGCAGTTTT 58.243 32.000 0.00 0.00 0.00 2.43
5162 6659 7.544622 TGTAACTGTATTCTAGGTGATGTCAC 58.455 38.462 4.58 4.58 45.72 3.67
5168 6665 6.852420 AGCTTGTAACTGTATTCTAGGTGA 57.148 37.500 0.00 0.00 0.00 4.02
5193 6690 5.774690 AGACAATTTCCTGCCAAACATAAGA 59.225 36.000 0.00 0.00 0.00 2.10
5973 8155 7.893302 ACCAAAAGGTGATAATCCATAGAACAA 59.107 33.333 0.00 0.00 0.00 2.83
6205 8387 3.581755 CCAGCTGAAACCATTGACATTG 58.418 45.455 17.39 0.00 0.00 2.82
6206 8388 2.564062 CCCAGCTGAAACCATTGACATT 59.436 45.455 17.39 0.00 0.00 2.71
6207 8389 2.173519 CCCAGCTGAAACCATTGACAT 58.826 47.619 17.39 0.00 0.00 3.06
6208 8390 1.144708 TCCCAGCTGAAACCATTGACA 59.855 47.619 17.39 0.00 0.00 3.58
6209 8391 1.909700 TCCCAGCTGAAACCATTGAC 58.090 50.000 17.39 0.00 0.00 3.18
6210 8392 2.041485 TCATCCCAGCTGAAACCATTGA 59.959 45.455 17.39 5.41 0.00 2.57
6354 8536 9.812347 TCACCTTATTTCCAGATATTAATGCAT 57.188 29.630 0.00 0.00 0.00 3.96
7209 9395 4.204799 GGGTTAGACACAAACCTTGAGTT 58.795 43.478 5.09 0.00 44.83 3.01
7454 9642 7.192852 ACTCATTCTCCACATCTTTACTCAT 57.807 36.000 0.00 0.00 0.00 2.90
7582 9774 6.041409 TGCCACATGACAGAAAATTAAAAGGA 59.959 34.615 0.00 0.00 0.00 3.36
7600 9792 2.440517 TGCCATTACATCTGCCACAT 57.559 45.000 0.00 0.00 0.00 3.21
7773 9965 3.181476 CCCTGAAATTTTCCATAAGGCGG 60.181 47.826 6.68 0.00 33.74 6.13
7853 10045 7.359765 GCCAAAGAACAATTTGAATCTGTCATG 60.360 37.037 2.79 0.00 41.71 3.07
7910 10102 6.037098 TGGTGTTGTAACATAAAAGTTGCAC 58.963 36.000 0.26 0.00 42.43 4.57
8347 10554 5.529581 TCATAATGTCGCTCATCAGGTAA 57.470 39.130 0.00 0.00 35.48 2.85
8348 10555 4.559502 GCTCATAATGTCGCTCATCAGGTA 60.560 45.833 0.00 0.00 35.48 3.08
8504 10712 3.290710 GTCTCTCTCTCTCTGGCTTCAT 58.709 50.000 0.00 0.00 0.00 2.57
8505 10713 2.040947 TGTCTCTCTCTCTCTGGCTTCA 59.959 50.000 0.00 0.00 0.00 3.02
8506 10714 2.684881 CTGTCTCTCTCTCTCTGGCTTC 59.315 54.545 0.00 0.00 0.00 3.86
8508 10716 1.635487 ACTGTCTCTCTCTCTCTGGCT 59.365 52.381 0.00 0.00 0.00 4.75
8509 10717 2.017049 GACTGTCTCTCTCTCTCTGGC 58.983 57.143 0.00 0.00 0.00 4.85
8511 10719 3.686241 CACAGACTGTCTCTCTCTCTCTG 59.314 52.174 7.49 0.00 0.00 3.35
8513 10721 3.935203 CTCACAGACTGTCTCTCTCTCTC 59.065 52.174 7.49 0.00 0.00 3.20
8514 10722 3.307691 CCTCACAGACTGTCTCTCTCTCT 60.308 52.174 7.49 0.00 0.00 3.10
8515 10723 3.009723 CCTCACAGACTGTCTCTCTCTC 58.990 54.545 7.49 0.00 0.00 3.20
8516 10724 2.642311 TCCTCACAGACTGTCTCTCTCT 59.358 50.000 7.49 0.00 0.00 3.10
8517 10725 3.066291 TCCTCACAGACTGTCTCTCTC 57.934 52.381 7.49 0.00 0.00 3.20
8593 10801 0.803740 CTCTGCAGGCTGAAGCTTTC 59.196 55.000 20.86 0.00 41.70 2.62
8616 10824 4.162698 ACTTCCACCGCCATTACAAGTATA 59.837 41.667 0.00 0.00 0.00 1.47
8617 10825 3.054655 ACTTCCACCGCCATTACAAGTAT 60.055 43.478 0.00 0.00 0.00 2.12
8630 10838 1.879380 TGCAGATTCAAACTTCCACCG 59.121 47.619 0.00 0.00 0.00 4.94
8639 10847 1.882912 AGTCAGCGTGCAGATTCAAA 58.117 45.000 0.00 0.00 0.00 2.69
8670 10878 4.058817 GGTATCTACATTCTTTGCCGGAG 58.941 47.826 5.05 0.00 0.00 4.63
8672 10880 3.804036 TGGTATCTACATTCTTTGCCGG 58.196 45.455 0.00 0.00 0.00 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.