Multiple sequence alignment - TraesCS3D01G529900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G529900 chr3D 100.000 3952 0 0 1 3952 606951384 606947433 0.000000e+00 7299.0
1 TraesCS3D01G529900 chr3D 92.473 93 6 1 1 92 283321175 283321267 8.910000e-27 132.0
2 TraesCS3D01G529900 chr3B 90.883 2424 139 36 855 3251 816278639 816276271 0.000000e+00 3177.0
3 TraesCS3D01G529900 chr3B 92.897 535 34 2 1262 1792 155848766 155848232 0.000000e+00 774.0
4 TraesCS3D01G529900 chr3B 88.412 466 36 10 3262 3713 816275992 816275531 2.690000e-151 545.0
5 TraesCS3D01G529900 chr3B 85.356 239 11 4 285 510 816279068 816278841 3.970000e-55 226.0
6 TraesCS3D01G529900 chr3B 92.500 120 7 2 661 780 816278850 816278733 1.890000e-38 171.0
7 TraesCS3D01G529900 chr3B 94.253 87 5 0 1 87 798395106 798395020 2.480000e-27 134.0
8 TraesCS3D01G529900 chr3A 91.876 1157 59 16 1179 2316 739378961 739377821 0.000000e+00 1583.0
9 TraesCS3D01G529900 chr3A 88.263 835 59 13 2346 3177 739377825 739377027 0.000000e+00 963.0
10 TraesCS3D01G529900 chr3A 86.989 807 46 22 74 852 739385153 739384378 0.000000e+00 854.0
11 TraesCS3D01G529900 chr3A 89.211 380 32 6 3340 3715 739376810 739376436 2.150000e-127 466.0
12 TraesCS3D01G529900 chr3A 92.580 283 15 3 901 1182 739384296 739384019 6.150000e-108 401.0
13 TraesCS3D01G529900 chr3A 93.182 44 3 0 817 860 739384353 739384310 9.170000e-07 65.8
14 TraesCS3D01G529900 chr4B 87.624 1212 108 26 1444 2639 658172692 658173877 0.000000e+00 1369.0
15 TraesCS3D01G529900 chr4B 84.224 767 88 12 1880 2646 658168939 658169672 0.000000e+00 715.0
16 TraesCS3D01G529900 chr4B 87.899 595 47 15 856 1449 658172097 658172667 0.000000e+00 676.0
17 TraesCS3D01G529900 chr4B 90.000 260 26 0 1530 1789 658170625 658170884 1.760000e-88 337.0
18 TraesCS3D01G529900 chr5A 91.646 790 51 7 1444 2229 697761046 697760268 0.000000e+00 1079.0
19 TraesCS3D01G529900 chr5A 84.162 764 88 11 1879 2642 697764775 697764045 0.000000e+00 710.0
20 TraesCS3D01G529900 chr5A 85.092 597 47 15 856 1451 697761630 697761075 4.430000e-159 571.0
21 TraesCS3D01G529900 chr5A 87.688 333 33 3 2310 2639 697760225 697759898 8.010000e-102 381.0
22 TraesCS3D01G529900 chr5A 91.600 250 19 2 1541 1789 697763143 697762895 1.050000e-90 344.0
23 TraesCS3D01G529900 chr5A 80.422 332 50 10 1064 1394 697763547 697763230 5.100000e-59 239.0
24 TraesCS3D01G529900 chr5A 75.720 243 47 10 2386 2626 697752649 697752417 1.160000e-20 111.0
25 TraesCS3D01G529900 chr4D 90.633 790 59 9 1444 2229 509101485 509100707 0.000000e+00 1035.0
26 TraesCS3D01G529900 chr4D 84.459 785 95 14 1879 2649 509105223 509104452 0.000000e+00 749.0
27 TraesCS3D01G529900 chr4D 88.215 594 46 13 856 1449 509102080 509101511 0.000000e+00 688.0
28 TraesCS3D01G529900 chr4D 87.988 333 32 3 2310 2639 509100664 509100337 1.720000e-103 387.0
29 TraesCS3D01G529900 chr4D 84.478 335 52 0 1882 2216 509103080 509102746 8.190000e-87 331.0
30 TraesCS3D01G529900 chr4D 89.615 260 27 0 1530 1789 509103565 509103306 8.190000e-87 331.0
31 TraesCS3D01G529900 chr7A 97.619 84 2 0 1 84 442265805 442265888 1.140000e-30 145.0
32 TraesCS3D01G529900 chr7A 98.718 78 1 0 2 79 704624387 704624310 5.330000e-29 139.0
33 TraesCS3D01G529900 chr7D 100.000 77 0 0 1 77 543740679 543740603 4.120000e-30 143.0
34 TraesCS3D01G529900 chr7D 98.718 78 1 0 1 78 466822279 466822356 5.330000e-29 139.0
35 TraesCS3D01G529900 chr6A 98.718 78 1 0 1 78 32749138 32749061 5.330000e-29 139.0
36 TraesCS3D01G529900 chr4A 96.429 84 2 1 2 84 14338691 14338774 1.920000e-28 137.0
37 TraesCS3D01G529900 chr1A 90.909 99 5 3 1 97 220553516 220553612 3.200000e-26 130.0
38 TraesCS3D01G529900 chrUn 83.898 118 6 4 73 190 46226094 46226198 2.510000e-17 100.0
39 TraesCS3D01G529900 chr1D 89.706 68 7 0 891 958 485885776 485885843 1.960000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G529900 chr3D 606947433 606951384 3951 True 7299.000000 7299 100.000000 1 3952 1 chr3D.!!$R1 3951
1 TraesCS3D01G529900 chr3B 816275531 816279068 3537 True 1029.750000 3177 89.287750 285 3713 4 chr3B.!!$R3 3428
2 TraesCS3D01G529900 chr3B 155848232 155848766 534 True 774.000000 774 92.897000 1262 1792 1 chr3B.!!$R1 530
3 TraesCS3D01G529900 chr3A 739376436 739378961 2525 True 1004.000000 1583 89.783333 1179 3715 3 chr3A.!!$R1 2536
4 TraesCS3D01G529900 chr3A 739384019 739385153 1134 True 440.266667 854 90.917000 74 1182 3 chr3A.!!$R2 1108
5 TraesCS3D01G529900 chr4B 658168939 658173877 4938 False 774.250000 1369 87.436750 856 2646 4 chr4B.!!$F1 1790
6 TraesCS3D01G529900 chr5A 697759898 697764775 4877 True 554.000000 1079 86.768333 856 2642 6 chr5A.!!$R2 1786
7 TraesCS3D01G529900 chr4D 509100337 509105223 4886 True 586.833333 1035 87.564667 856 2649 6 chr4D.!!$R1 1793

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
536 561 0.323360 AGCTGAGCGGGCCAAAAATA 60.323 50.000 4.39 0.0 0.0 1.40 F
879 3279 2.297701 TCTGTCCAGTGTGAAAAAGGC 58.702 47.619 0.00 0.0 0.0 4.35 F
2734 5226 0.308993 GAACTGGACACTGCTTGCAC 59.691 55.000 0.00 0.0 0.0 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1481 3960 0.534427 CAGGATGATGAGGCGCACAT 60.534 55.0 16.85 16.85 39.69 3.21 R
2863 5355 0.040058 TACAAGGTACCTCGCTCCCA 59.960 55.0 16.64 0.00 0.00 4.37 R
3827 6618 0.110295 CCATGGTGGATATTCCCGCA 59.890 55.0 2.57 0.00 40.96 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 9.578439 AAGTCACGTTTTAGTATTAGATACACC 57.422 33.333 0.00 0.00 38.21 4.16
32 33 7.166473 GTCACGTTTTAGTATTAGATACACCCG 59.834 40.741 0.00 0.00 38.21 5.28
33 34 6.974622 CACGTTTTAGTATTAGATACACCCGT 59.025 38.462 0.00 0.00 38.21 5.28
50 51 9.760077 ATACACCCGTATCTAGACAAATTTAAG 57.240 33.333 0.00 0.00 32.66 1.85
51 52 7.844009 ACACCCGTATCTAGACAAATTTAAGA 58.156 34.615 0.00 0.00 0.00 2.10
54 55 8.316214 ACCCGTATCTAGACAAATTTAAGACAA 58.684 33.333 0.00 0.00 0.00 3.18
55 56 8.818057 CCCGTATCTAGACAAATTTAAGACAAG 58.182 37.037 0.00 0.00 0.00 3.16
56 57 9.582431 CCGTATCTAGACAAATTTAAGACAAGA 57.418 33.333 0.00 0.00 0.00 3.02
64 65 9.546428 AGACAAATTTAAGACAAGAATTTTGGG 57.454 29.630 0.00 0.00 33.39 4.12
65 66 9.541143 GACAAATTTAAGACAAGAATTTTGGGA 57.459 29.630 0.00 0.00 33.39 4.37
66 67 9.325198 ACAAATTTAAGACAAGAATTTTGGGAC 57.675 29.630 0.00 0.00 33.39 4.46
67 68 8.487176 CAAATTTAAGACAAGAATTTTGGGACG 58.513 33.333 0.00 0.00 32.35 4.79
68 69 5.699097 TTAAGACAAGAATTTTGGGACGG 57.301 39.130 0.00 0.00 0.00 4.79
70 71 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
72 73 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
92 93 6.099269 GGAGGGAGTACAACCATCAGTTTATA 59.901 42.308 19.67 0.00 39.56 0.98
100 101 7.391148 ACAACCATCAGTTTATATTGTGGTC 57.609 36.000 0.00 0.00 37.49 4.02
178 179 8.517878 TGTAAGCTGTCCCTATTATTATACGTC 58.482 37.037 0.00 0.00 0.00 4.34
216 217 1.185618 TCTGGTGCCGAGTTACTGCT 61.186 55.000 0.00 0.00 0.00 4.24
239 240 7.571892 GCTAGCTGAAGCAAGTATTTCTAATC 58.428 38.462 7.70 0.00 45.16 1.75
272 273 8.854117 GGCCAAATTGTCTCTGAAGAATATTAT 58.146 33.333 0.00 0.00 31.93 1.28
309 317 3.279434 GGACAGTTGACTTGGACTTTGT 58.721 45.455 0.00 0.00 0.00 2.83
316 324 3.221771 TGACTTGGACTTTGTGATTGGG 58.778 45.455 0.00 0.00 0.00 4.12
335 343 3.245016 TGGGTGAAGAAGTGCAGATCAAT 60.245 43.478 0.00 0.00 0.00 2.57
341 349 6.476380 GTGAAGAAGTGCAGATCAATCTCTAG 59.524 42.308 0.00 0.00 34.22 2.43
468 493 1.873698 CGGTTTCCGTTTTCCTCAGA 58.126 50.000 0.00 0.00 42.73 3.27
525 550 0.952497 TTTCCTTGAGCAGCTGAGCG 60.952 55.000 20.43 0.00 40.15 5.03
536 561 0.323360 AGCTGAGCGGGCCAAAAATA 60.323 50.000 4.39 0.00 0.00 1.40
574 599 3.067461 TGGGTTTTTCAGTTGGTCATTCG 59.933 43.478 0.00 0.00 0.00 3.34
584 609 8.956533 TTCAGTTGGTCATTCGATTATTATGA 57.043 30.769 0.00 0.00 0.00 2.15
608 633 8.988060 TGAACTAATAGAACATAGGGTGATTCA 58.012 33.333 0.00 0.00 0.00 2.57
609 634 9.262358 GAACTAATAGAACATAGGGTGATTCAC 57.738 37.037 8.34 8.34 0.00 3.18
612 637 7.437713 AATAGAACATAGGGTGATTCACAGA 57.562 36.000 18.09 3.38 35.86 3.41
613 638 5.965033 AGAACATAGGGTGATTCACAGAT 57.035 39.130 18.09 5.49 35.86 2.90
636 661 3.367646 AGACTGAGGACTGGACGATAA 57.632 47.619 0.00 0.00 0.00 1.75
637 662 3.698289 AGACTGAGGACTGGACGATAAA 58.302 45.455 0.00 0.00 0.00 1.40
652 677 8.343974 TGGACGATAAAACATTCGAGTATTAC 57.656 34.615 0.00 0.00 38.67 1.89
766 795 2.433604 TGTCATCTCTGATTGCTCTCCC 59.566 50.000 0.00 0.00 32.98 4.30
877 3277 5.567138 AGTTTCTGTCCAGTGTGAAAAAG 57.433 39.130 0.00 0.00 31.47 2.27
879 3279 2.297701 TCTGTCCAGTGTGAAAAAGGC 58.702 47.619 0.00 0.00 0.00 4.35
902 3302 8.061304 AGGCTGATTCCCAGAAAATAAGATAAA 58.939 33.333 0.00 0.00 45.78 1.40
939 3339 7.944729 TCCCCAGAAAATAAAAGAATGAGAG 57.055 36.000 0.00 0.00 0.00 3.20
982 3382 9.657121 GTTTTCTATTTCTATGATTGTAGCTGC 57.343 33.333 0.00 0.00 0.00 5.25
1000 3400 7.986889 TGTAGCTGCACTGATTTTCTGAATATA 59.013 33.333 0.00 0.00 0.00 0.86
1001 3401 8.997323 GTAGCTGCACTGATTTTCTGAATATAT 58.003 33.333 1.02 0.00 0.00 0.86
1003 3403 9.736414 AGCTGCACTGATTTTCTGAATATATAT 57.264 29.630 1.02 0.00 0.00 0.86
1055 3462 7.230913 TGGCTACCATCTGTCTATAACTCTTAC 59.769 40.741 0.00 0.00 0.00 2.34
1107 3517 5.799213 CCAGAACAGAAGACTCCAGTATTT 58.201 41.667 0.00 0.00 28.51 1.40
1396 3828 2.306219 GGGCTTCTTCCAGGTTAGTTCT 59.694 50.000 0.00 0.00 0.00 3.01
1470 3938 4.697514 CAAAGACAGTTGACTTCCTCTGA 58.302 43.478 0.00 0.00 0.00 3.27
1476 3955 7.122715 AGACAGTTGACTTCCTCTGATATACT 58.877 38.462 0.00 0.00 0.00 2.12
1477 3956 8.275758 AGACAGTTGACTTCCTCTGATATACTA 58.724 37.037 0.00 0.00 0.00 1.82
1478 3957 9.073475 GACAGTTGACTTCCTCTGATATACTAT 57.927 37.037 0.00 0.00 0.00 2.12
1727 4206 2.164422 TGACATGCTCTTCCTCTACACG 59.836 50.000 0.00 0.00 0.00 4.49
1816 4295 7.877097 AGCTAGATTGCGATGATATTCTTCTTT 59.123 33.333 0.00 0.00 38.13 2.52
1818 4297 6.666417 AGATTGCGATGATATTCTTCTTTGC 58.334 36.000 0.00 0.00 33.10 3.68
1847 4326 1.957177 TCTGTCACGCTCTTCTTCAGT 59.043 47.619 0.00 0.00 0.00 3.41
1868 4356 8.862325 TCAGTTTAGTTACAATGGAATGATGT 57.138 30.769 0.00 0.00 0.00 3.06
1943 4431 6.672218 TGAAGGATGTATCAGACTCCCTTTTA 59.328 38.462 0.00 0.00 39.24 1.52
2090 4578 1.883084 CCCGCACTCCGATGCTAAC 60.883 63.158 5.03 0.00 43.80 2.34
2233 4721 4.312231 GAGCACGCGCAGTTGCAA 62.312 61.111 23.03 0.00 42.27 4.08
2235 4723 2.175566 GCACGCGCAGTTGCAATA 59.824 55.556 18.00 0.00 42.21 1.90
2236 4724 1.441849 GCACGCGCAGTTGCAATAA 60.442 52.632 18.00 0.00 42.21 1.40
2294 4782 6.836007 TGATCAGATGTTAGAGACTGTATGGT 59.164 38.462 0.00 0.00 0.00 3.55
2296 4784 5.952347 TCAGATGTTAGAGACTGTATGGTGT 59.048 40.000 0.00 0.00 0.00 4.16
2299 4787 3.056107 TGTTAGAGACTGTATGGTGTGGC 60.056 47.826 0.00 0.00 0.00 5.01
2321 4810 4.142513 GCCATATGCTAGCTAGATTTTGCC 60.143 45.833 25.15 5.17 36.87 4.52
2328 4817 2.359900 AGCTAGATTTTGCCGAACTGG 58.640 47.619 0.00 0.00 42.50 4.00
2350 4839 8.145767 ACTGGCATATCATCAACCAAATAAATG 58.854 33.333 0.00 0.00 0.00 2.32
2467 4959 0.602638 AAGAACGGCTGTCGATTGCA 60.603 50.000 9.35 0.00 42.43 4.08
2596 5088 1.733041 CTTCGCGACCAAGCTCGAA 60.733 57.895 9.15 5.68 38.42 3.71
2698 5190 0.664767 GACTCGACAGTGCTCGCTTT 60.665 55.000 9.39 0.00 33.47 3.51
2718 5210 4.853924 TTGGCTCTTCTTTCCAATGAAC 57.146 40.909 0.00 0.00 35.17 3.18
2734 5226 0.308993 GAACTGGACACTGCTTGCAC 59.691 55.000 0.00 0.00 0.00 4.57
2748 5240 1.532868 CTTGCACCGGAGTTCTCTTTG 59.467 52.381 9.46 0.00 0.00 2.77
2764 5256 3.312890 TCTTTGGGGAGGCAAAATTTCA 58.687 40.909 0.00 0.00 0.00 2.69
2798 5290 8.846211 ACTAGCTTTGTTGATTTTAAAGTGCTA 58.154 29.630 0.00 0.00 34.69 3.49
2799 5291 9.846248 CTAGCTTTGTTGATTTTAAAGTGCTAT 57.154 29.630 0.00 0.00 34.69 2.97
2806 5298 7.871973 TGTTGATTTTAAAGTGCTATTGTGCAT 59.128 29.630 0.00 0.00 45.23 3.96
2869 5361 2.437897 CCATATGGCCCTGGGAGC 59.562 66.667 19.27 0.75 0.00 4.70
2888 5380 1.567504 CGAGGTACCTTGTATTGGCG 58.432 55.000 17.53 8.46 0.00 5.69
2894 5386 0.034337 ACCTTGTATTGGCGTGACGT 59.966 50.000 6.91 0.00 0.00 4.34
2905 5397 1.149361 GCGTGACGTTGTTCCTGACA 61.149 55.000 6.91 0.00 36.19 3.58
2933 5425 1.781786 TCTCTGGTGGCTAGTGATCC 58.218 55.000 0.00 0.00 0.00 3.36
2996 5503 5.886960 AAAAAGCAGCTGAATACTACCAG 57.113 39.130 20.43 0.00 0.00 4.00
3006 5513 5.221541 GCTGAATACTACCAGAGCAGGTAAT 60.222 44.000 4.59 0.00 43.24 1.89
3068 5575 5.262588 TCAGATAGCGTGACACATGTATT 57.737 39.130 6.37 0.00 0.00 1.89
3069 5576 5.660460 TCAGATAGCGTGACACATGTATTT 58.340 37.500 6.37 0.00 0.00 1.40
3095 5602 0.445436 GGCTTGCAGACAGACAATCG 59.555 55.000 0.00 0.00 0.00 3.34
3101 5608 1.671261 GCAGACAGACAATCGTGCTCT 60.671 52.381 0.00 0.00 0.00 4.09
3109 5616 4.790140 CAGACAATCGTGCTCTAAAATTGC 59.210 41.667 0.00 0.00 31.96 3.56
3133 5640 7.094162 TGCAGTTTCCTGTATATAGCTAGCTAG 60.094 40.741 27.42 16.84 41.02 3.42
3134 5641 7.254852 CAGTTTCCTGTATATAGCTAGCTAGC 58.745 42.308 33.96 33.96 40.48 3.42
3135 5642 7.122055 CAGTTTCCTGTATATAGCTAGCTAGCT 59.878 40.741 41.49 41.49 46.09 3.32
3146 5653 2.603652 GCTAGCTAGCTAGTCGTCTTGC 60.604 54.545 39.05 25.88 45.67 4.01
3177 5684 3.936564 AGAGATCTGAACTTGTCAAGCC 58.063 45.455 12.66 5.65 35.22 4.35
3178 5685 3.582208 AGAGATCTGAACTTGTCAAGCCT 59.418 43.478 12.66 0.00 35.22 4.58
3179 5686 4.041444 AGAGATCTGAACTTGTCAAGCCTT 59.959 41.667 12.66 0.24 35.22 4.35
3180 5687 4.322567 AGATCTGAACTTGTCAAGCCTTC 58.677 43.478 12.66 10.15 35.22 3.46
3181 5688 3.558931 TCTGAACTTGTCAAGCCTTCA 57.441 42.857 12.66 13.81 35.22 3.02
3203 5710 5.009510 TCAATATTGTGGTTTCAGTGTGTGG 59.990 40.000 14.97 0.00 0.00 4.17
3279 6054 6.630203 TTTTACATAGGCAGTTAGGAAGGA 57.370 37.500 0.00 0.00 0.00 3.36
3351 6126 9.634163 CTCAACATATACATAGTGCCGTTATTA 57.366 33.333 0.00 0.00 0.00 0.98
3359 6134 7.709269 ACATAGTGCCGTTATTAATGTAGTG 57.291 36.000 0.00 0.00 0.00 2.74
3360 6135 7.270047 ACATAGTGCCGTTATTAATGTAGTGT 58.730 34.615 0.00 0.00 0.00 3.55
3378 6155 7.539436 TGTAGTGTGTTCTCTTATCTCATGTC 58.461 38.462 0.00 0.00 0.00 3.06
3401 6178 3.814625 TGTCAACCTGCTAACAATGTCA 58.185 40.909 0.00 0.00 0.00 3.58
3526 6312 0.938168 GTTGTCGACGAGGTGACCAC 60.938 60.000 11.62 0.00 34.18 4.16
3529 6315 1.072678 TCGACGAGGTGACCACTCT 59.927 57.895 3.63 0.00 32.83 3.24
3530 6316 1.210413 CGACGAGGTGACCACTCTG 59.790 63.158 3.63 0.00 32.83 3.35
3531 6317 1.516365 CGACGAGGTGACCACTCTGT 61.516 60.000 3.63 0.00 32.83 3.41
3533 6319 0.674534 ACGAGGTGACCACTCTGTTC 59.325 55.000 3.63 0.00 32.83 3.18
3537 6323 1.341531 AGGTGACCACTCTGTTCTTCG 59.658 52.381 3.63 0.00 0.00 3.79
3538 6324 1.605712 GGTGACCACTCTGTTCTTCGG 60.606 57.143 0.00 0.00 0.00 4.30
3583 6372 6.524101 TGCAGTGTCTACATATCTTGTACA 57.476 37.500 0.00 0.00 39.87 2.90
3584 6373 6.564328 TGCAGTGTCTACATATCTTGTACAG 58.436 40.000 0.00 0.00 39.87 2.74
3695 6486 6.205101 GAGTGAACTCCCTTCGTAAGATAA 57.795 41.667 0.00 0.00 41.04 1.75
3720 6511 6.560253 AAATTCTTATACATCATCGGTGGC 57.440 37.500 0.00 0.00 0.00 5.01
3721 6512 4.681074 TTCTTATACATCATCGGTGGCA 57.319 40.909 0.00 0.00 0.00 4.92
3722 6513 4.257267 TCTTATACATCATCGGTGGCAG 57.743 45.455 0.00 0.00 0.00 4.85
3723 6514 2.455674 TATACATCATCGGTGGCAGC 57.544 50.000 6.62 6.62 0.00 5.25
3724 6515 0.761187 ATACATCATCGGTGGCAGCT 59.239 50.000 15.48 0.00 0.00 4.24
3725 6516 0.104855 TACATCATCGGTGGCAGCTC 59.895 55.000 15.48 0.00 0.00 4.09
3726 6517 1.145598 CATCATCGGTGGCAGCTCT 59.854 57.895 15.48 0.00 0.00 4.09
3727 6518 0.390492 CATCATCGGTGGCAGCTCTA 59.610 55.000 15.48 0.30 0.00 2.43
3728 6519 1.001746 CATCATCGGTGGCAGCTCTAT 59.998 52.381 15.48 2.82 0.00 1.98
3729 6520 0.390492 TCATCGGTGGCAGCTCTATG 59.610 55.000 15.48 14.49 0.00 2.23
3730 6521 0.602106 CATCGGTGGCAGCTCTATGG 60.602 60.000 15.48 0.00 0.00 2.74
3731 6522 1.762522 ATCGGTGGCAGCTCTATGGG 61.763 60.000 15.48 0.00 0.00 4.00
3732 6523 2.512896 GGTGGCAGCTCTATGGGG 59.487 66.667 9.90 0.00 0.00 4.96
3733 6524 2.512896 GTGGCAGCTCTATGGGGG 59.487 66.667 0.00 0.00 0.00 5.40
3734 6525 2.072487 GTGGCAGCTCTATGGGGGA 61.072 63.158 0.00 0.00 0.00 4.81
3735 6526 1.767672 TGGCAGCTCTATGGGGGAG 60.768 63.158 0.00 0.00 0.00 4.30
3736 6527 2.524204 GGCAGCTCTATGGGGGAGG 61.524 68.421 0.00 0.00 0.00 4.30
3737 6528 1.460305 GCAGCTCTATGGGGGAGGA 60.460 63.158 0.00 0.00 0.00 3.71
3738 6529 0.839853 GCAGCTCTATGGGGGAGGAT 60.840 60.000 0.00 0.00 0.00 3.24
3739 6530 1.553417 GCAGCTCTATGGGGGAGGATA 60.553 57.143 0.00 0.00 0.00 2.59
3740 6531 2.465813 CAGCTCTATGGGGGAGGATAG 58.534 57.143 0.00 0.00 0.00 2.08
3741 6532 2.043664 CAGCTCTATGGGGGAGGATAGA 59.956 54.545 0.00 0.00 31.71 1.98
3742 6533 2.939340 AGCTCTATGGGGGAGGATAGAT 59.061 50.000 0.00 0.00 32.10 1.98
3743 6534 3.052186 AGCTCTATGGGGGAGGATAGATC 60.052 52.174 0.00 0.00 32.10 2.75
3757 6548 5.319043 GGATAGATCCCCATTTGTAACCA 57.681 43.478 0.00 0.00 41.20 3.67
3758 6549 5.892348 GGATAGATCCCCATTTGTAACCAT 58.108 41.667 0.00 0.00 41.20 3.55
3759 6550 6.314917 GGATAGATCCCCATTTGTAACCATT 58.685 40.000 0.00 0.00 41.20 3.16
3760 6551 6.782494 GGATAGATCCCCATTTGTAACCATTT 59.218 38.462 0.00 0.00 41.20 2.32
3761 6552 7.039714 GGATAGATCCCCATTTGTAACCATTTC 60.040 40.741 0.00 0.00 41.20 2.17
3762 6553 5.842339 AGATCCCCATTTGTAACCATTTCT 58.158 37.500 0.00 0.00 0.00 2.52
3763 6554 6.980577 AGATCCCCATTTGTAACCATTTCTA 58.019 36.000 0.00 0.00 0.00 2.10
3764 6555 7.418378 AGATCCCCATTTGTAACCATTTCTAA 58.582 34.615 0.00 0.00 0.00 2.10
3765 6556 6.844097 TCCCCATTTGTAACCATTTCTAAC 57.156 37.500 0.00 0.00 0.00 2.34
3766 6557 6.557568 TCCCCATTTGTAACCATTTCTAACT 58.442 36.000 0.00 0.00 0.00 2.24
3767 6558 6.661805 TCCCCATTTGTAACCATTTCTAACTC 59.338 38.462 0.00 0.00 0.00 3.01
3768 6559 6.435904 CCCCATTTGTAACCATTTCTAACTCA 59.564 38.462 0.00 0.00 0.00 3.41
3769 6560 7.124147 CCCCATTTGTAACCATTTCTAACTCAT 59.876 37.037 0.00 0.00 0.00 2.90
3770 6561 9.184523 CCCATTTGTAACCATTTCTAACTCATA 57.815 33.333 0.00 0.00 0.00 2.15
3779 6570 8.954950 ACCATTTCTAACTCATAACTCATCAG 57.045 34.615 0.00 0.00 0.00 2.90
3780 6571 7.989741 ACCATTTCTAACTCATAACTCATCAGG 59.010 37.037 0.00 0.00 0.00 3.86
3781 6572 8.206867 CCATTTCTAACTCATAACTCATCAGGA 58.793 37.037 0.00 0.00 0.00 3.86
3782 6573 9.775854 CATTTCTAACTCATAACTCATCAGGAT 57.224 33.333 0.00 0.00 0.00 3.24
3787 6578 7.976135 AACTCATAACTCATCAGGATTATGC 57.024 36.000 0.00 0.00 35.76 3.14
3788 6579 6.471146 ACTCATAACTCATCAGGATTATGCC 58.529 40.000 0.00 0.00 35.76 4.40
3789 6580 6.043590 ACTCATAACTCATCAGGATTATGCCA 59.956 38.462 0.00 0.00 35.76 4.92
3790 6581 7.024345 TCATAACTCATCAGGATTATGCCAT 57.976 36.000 0.00 0.00 35.76 4.40
3791 6582 7.108194 TCATAACTCATCAGGATTATGCCATC 58.892 38.462 0.00 0.00 35.76 3.51
3792 6583 5.579753 AACTCATCAGGATTATGCCATCT 57.420 39.130 0.00 0.00 0.00 2.90
3793 6584 5.579753 ACTCATCAGGATTATGCCATCTT 57.420 39.130 0.00 0.00 0.00 2.40
3794 6585 6.692849 ACTCATCAGGATTATGCCATCTTA 57.307 37.500 0.00 0.00 0.00 2.10
3795 6586 7.268212 ACTCATCAGGATTATGCCATCTTAT 57.732 36.000 0.00 0.00 0.00 1.73
3796 6587 7.110810 ACTCATCAGGATTATGCCATCTTATG 58.889 38.462 0.00 0.00 0.00 1.90
3797 6588 7.037802 ACTCATCAGGATTATGCCATCTTATGA 60.038 37.037 0.00 0.00 0.00 2.15
3798 6589 7.692172 TCATCAGGATTATGCCATCTTATGAA 58.308 34.615 0.00 0.00 0.00 2.57
3799 6590 7.609146 TCATCAGGATTATGCCATCTTATGAAC 59.391 37.037 0.00 0.00 0.00 3.18
3800 6591 6.840527 TCAGGATTATGCCATCTTATGAACA 58.159 36.000 0.00 0.00 0.00 3.18
3801 6592 7.464273 TCAGGATTATGCCATCTTATGAACAT 58.536 34.615 0.00 0.00 33.45 2.71
3802 6593 8.605065 TCAGGATTATGCCATCTTATGAACATA 58.395 33.333 0.00 0.00 31.97 2.29
3803 6594 8.671921 CAGGATTATGCCATCTTATGAACATAC 58.328 37.037 0.00 0.00 32.54 2.39
3804 6595 8.385491 AGGATTATGCCATCTTATGAACATACA 58.615 33.333 0.00 0.00 32.54 2.29
3805 6596 9.013229 GGATTATGCCATCTTATGAACATACAA 57.987 33.333 0.00 0.00 32.54 2.41
3810 6601 9.797642 ATGCCATCTTATGAACATACAAATAGA 57.202 29.630 0.00 0.00 0.00 1.98
3811 6602 9.625747 TGCCATCTTATGAACATACAAATAGAA 57.374 29.630 0.00 0.00 0.00 2.10
3820 6611 9.784531 ATGAACATACAAATAGAATTCCTCGAT 57.215 29.630 0.65 0.00 0.00 3.59
3821 6612 9.045223 TGAACATACAAATAGAATTCCTCGATG 57.955 33.333 0.65 0.00 0.00 3.84
3822 6613 8.964476 AACATACAAATAGAATTCCTCGATGT 57.036 30.769 0.65 4.52 0.00 3.06
3823 6614 8.594881 ACATACAAATAGAATTCCTCGATGTC 57.405 34.615 0.65 0.00 0.00 3.06
3824 6615 8.204160 ACATACAAATAGAATTCCTCGATGTCA 58.796 33.333 0.65 0.00 0.00 3.58
3825 6616 6.910536 ACAAATAGAATTCCTCGATGTCAC 57.089 37.500 0.65 0.00 0.00 3.67
3826 6617 6.644347 ACAAATAGAATTCCTCGATGTCACT 58.356 36.000 0.65 0.00 0.00 3.41
3827 6618 7.106239 ACAAATAGAATTCCTCGATGTCACTT 58.894 34.615 0.65 0.00 0.00 3.16
3828 6619 7.065085 ACAAATAGAATTCCTCGATGTCACTTG 59.935 37.037 0.65 0.00 0.00 3.16
3829 6620 3.265791 AGAATTCCTCGATGTCACTTGC 58.734 45.455 0.65 0.00 0.00 4.01
3830 6621 1.645034 ATTCCTCGATGTCACTTGCG 58.355 50.000 0.00 0.00 0.00 4.85
3831 6622 0.389817 TTCCTCGATGTCACTTGCGG 60.390 55.000 0.00 0.00 0.00 5.69
3832 6623 1.811266 CCTCGATGTCACTTGCGGG 60.811 63.158 0.00 0.00 0.00 6.13
3833 6624 1.215382 CTCGATGTCACTTGCGGGA 59.785 57.895 0.00 0.00 0.00 5.14
3834 6625 0.389817 CTCGATGTCACTTGCGGGAA 60.390 55.000 0.00 0.00 0.00 3.97
3835 6626 0.249120 TCGATGTCACTTGCGGGAAT 59.751 50.000 0.00 0.00 0.00 3.01
3836 6627 1.478916 TCGATGTCACTTGCGGGAATA 59.521 47.619 0.00 0.00 0.00 1.75
3837 6628 2.102420 TCGATGTCACTTGCGGGAATAT 59.898 45.455 0.00 0.00 0.00 1.28
3838 6629 2.476619 CGATGTCACTTGCGGGAATATC 59.523 50.000 0.00 0.00 0.00 1.63
3839 6630 2.325583 TGTCACTTGCGGGAATATCC 57.674 50.000 0.00 0.00 35.23 2.59
3840 6631 1.557371 TGTCACTTGCGGGAATATCCA 59.443 47.619 0.00 0.00 38.64 3.41
3841 6632 1.940613 GTCACTTGCGGGAATATCCAC 59.059 52.381 0.00 0.00 38.64 4.02
3842 6633 1.134220 TCACTTGCGGGAATATCCACC 60.134 52.381 0.00 0.00 38.64 4.61
3843 6634 0.916086 ACTTGCGGGAATATCCACCA 59.084 50.000 0.00 0.00 38.64 4.17
3844 6635 1.494721 ACTTGCGGGAATATCCACCAT 59.505 47.619 0.00 0.00 38.64 3.55
3845 6636 1.881973 CTTGCGGGAATATCCACCATG 59.118 52.381 0.00 0.00 38.64 3.66
3846 6637 0.110295 TGCGGGAATATCCACCATGG 59.890 55.000 11.19 11.19 38.64 3.66
3860 6651 6.395780 TCCACCATGGATTTAACTAAGGAA 57.604 37.500 21.47 0.00 42.67 3.36
3861 6652 6.423182 TCCACCATGGATTTAACTAAGGAAG 58.577 40.000 21.47 0.00 42.67 3.46
3862 6653 6.216662 TCCACCATGGATTTAACTAAGGAAGA 59.783 38.462 21.47 0.00 42.67 2.87
3863 6654 7.062957 CCACCATGGATTTAACTAAGGAAGAT 58.937 38.462 21.47 0.00 40.96 2.40
3864 6655 7.229506 CCACCATGGATTTAACTAAGGAAGATC 59.770 40.741 21.47 0.00 40.96 2.75
3865 6656 7.775093 CACCATGGATTTAACTAAGGAAGATCA 59.225 37.037 21.47 0.00 0.00 2.92
3866 6657 8.506083 ACCATGGATTTAACTAAGGAAGATCAT 58.494 33.333 21.47 0.00 0.00 2.45
3867 6658 9.007901 CCATGGATTTAACTAAGGAAGATCATC 57.992 37.037 5.56 0.00 0.00 2.92
3868 6659 8.715998 CATGGATTTAACTAAGGAAGATCATCG 58.284 37.037 0.00 0.00 0.00 3.84
3869 6660 7.792032 TGGATTTAACTAAGGAAGATCATCGT 58.208 34.615 0.00 0.00 0.00 3.73
3870 6661 7.926555 TGGATTTAACTAAGGAAGATCATCGTC 59.073 37.037 0.00 0.00 0.00 4.20
3871 6662 7.926555 GGATTTAACTAAGGAAGATCATCGTCA 59.073 37.037 2.83 0.00 0.00 4.35
3872 6663 9.314321 GATTTAACTAAGGAAGATCATCGTCAA 57.686 33.333 2.83 0.00 0.00 3.18
3873 6664 9.667107 ATTTAACTAAGGAAGATCATCGTCAAA 57.333 29.630 2.83 0.00 0.00 2.69
3874 6665 9.496873 TTTAACTAAGGAAGATCATCGTCAAAA 57.503 29.630 2.83 0.00 0.00 2.44
3875 6666 7.979444 AACTAAGGAAGATCATCGTCAAAAA 57.021 32.000 2.83 0.00 0.00 1.94
3876 6667 8.567285 AACTAAGGAAGATCATCGTCAAAAAT 57.433 30.769 2.83 0.00 0.00 1.82
3877 6668 8.567285 ACTAAGGAAGATCATCGTCAAAAATT 57.433 30.769 2.83 0.00 0.00 1.82
3878 6669 9.667107 ACTAAGGAAGATCATCGTCAAAAATTA 57.333 29.630 2.83 0.00 0.00 1.40
3881 6672 8.567285 AGGAAGATCATCGTCAAAAATTAAGT 57.433 30.769 2.83 0.00 0.00 2.24
3882 6673 8.454106 AGGAAGATCATCGTCAAAAATTAAGTG 58.546 33.333 2.83 0.00 0.00 3.16
3883 6674 7.218963 GGAAGATCATCGTCAAAAATTAAGTGC 59.781 37.037 2.83 0.00 0.00 4.40
3884 6675 7.383102 AGATCATCGTCAAAAATTAAGTGCT 57.617 32.000 0.00 0.00 0.00 4.40
3885 6676 8.492673 AGATCATCGTCAAAAATTAAGTGCTA 57.507 30.769 0.00 0.00 0.00 3.49
3886 6677 8.391106 AGATCATCGTCAAAAATTAAGTGCTAC 58.609 33.333 0.00 0.00 0.00 3.58
3887 6678 7.667043 TCATCGTCAAAAATTAAGTGCTACT 57.333 32.000 0.00 0.00 0.00 2.57
3888 6679 7.739295 TCATCGTCAAAAATTAAGTGCTACTC 58.261 34.615 0.00 0.00 0.00 2.59
3889 6680 7.386573 TCATCGTCAAAAATTAAGTGCTACTCA 59.613 33.333 0.00 0.00 0.00 3.41
3890 6681 7.667043 TCGTCAAAAATTAAGTGCTACTCAT 57.333 32.000 0.00 0.00 0.00 2.90
3891 6682 8.766000 TCGTCAAAAATTAAGTGCTACTCATA 57.234 30.769 0.00 0.00 0.00 2.15
3892 6683 9.378551 TCGTCAAAAATTAAGTGCTACTCATAT 57.621 29.630 0.00 0.00 0.00 1.78
3893 6684 9.425893 CGTCAAAAATTAAGTGCTACTCATATG 57.574 33.333 0.00 0.00 0.00 1.78
3902 6693 5.960113 AGTGCTACTCATATGTATAGCTGC 58.040 41.667 26.70 21.70 40.59 5.25
3903 6694 4.795795 GTGCTACTCATATGTATAGCTGCG 59.204 45.833 26.70 5.69 40.59 5.18
3904 6695 3.794028 GCTACTCATATGTATAGCTGCGC 59.206 47.826 22.83 0.00 37.62 6.09
3905 6696 4.439426 GCTACTCATATGTATAGCTGCGCT 60.439 45.833 22.83 8.09 43.41 5.92
3906 6697 3.842820 ACTCATATGTATAGCTGCGCTG 58.157 45.455 9.73 10.04 40.10 5.18
3907 6698 3.507622 ACTCATATGTATAGCTGCGCTGA 59.492 43.478 19.32 2.84 40.10 4.26
3908 6699 4.021981 ACTCATATGTATAGCTGCGCTGAA 60.022 41.667 19.32 5.33 40.10 3.02
3909 6700 4.488879 TCATATGTATAGCTGCGCTGAAG 58.511 43.478 19.32 3.29 40.10 3.02
3910 6701 4.218417 TCATATGTATAGCTGCGCTGAAGA 59.782 41.667 19.32 2.02 40.10 2.87
3911 6702 2.959507 TGTATAGCTGCGCTGAAGAA 57.040 45.000 19.32 0.00 40.10 2.52
3912 6703 3.459232 TGTATAGCTGCGCTGAAGAAT 57.541 42.857 19.32 7.30 40.10 2.40
3913 6704 3.797039 TGTATAGCTGCGCTGAAGAATT 58.203 40.909 19.32 0.00 40.10 2.17
3931 6722 8.195617 GAAGAATTCACATGAAAACCAAAACA 57.804 30.769 8.44 0.00 46.62 2.83
3932 6723 8.735692 AAGAATTCACATGAAAACCAAAACAT 57.264 26.923 8.44 0.00 37.61 2.71
3933 6724 8.735692 AGAATTCACATGAAAACCAAAACATT 57.264 26.923 8.44 0.00 37.61 2.71
3934 6725 8.614346 AGAATTCACATGAAAACCAAAACATTG 58.386 29.630 8.44 0.00 37.61 2.82
3935 6726 7.261829 ATTCACATGAAAACCAAAACATTGG 57.738 32.000 0.00 6.06 41.53 3.16
3936 6727 5.982356 TCACATGAAAACCAAAACATTGGA 58.018 33.333 14.18 0.00 44.82 3.53
3937 6728 5.814705 TCACATGAAAACCAAAACATTGGAC 59.185 36.000 14.18 4.00 44.82 4.02
3938 6729 5.007528 CACATGAAAACCAAAACATTGGACC 59.992 40.000 14.18 0.00 44.82 4.46
3939 6730 5.104569 ACATGAAAACCAAAACATTGGACCT 60.105 36.000 14.18 0.00 44.82 3.85
3940 6731 6.098982 ACATGAAAACCAAAACATTGGACCTA 59.901 34.615 14.18 0.00 44.82 3.08
3941 6732 5.908341 TGAAAACCAAAACATTGGACCTAC 58.092 37.500 14.18 3.12 44.82 3.18
3942 6733 5.422331 TGAAAACCAAAACATTGGACCTACA 59.578 36.000 14.18 5.28 44.82 2.74
3943 6734 6.098982 TGAAAACCAAAACATTGGACCTACAT 59.901 34.615 14.18 0.00 44.82 2.29
3944 6735 6.493189 AAACCAAAACATTGGACCTACATT 57.507 33.333 14.18 0.00 44.82 2.71
3945 6736 5.722021 ACCAAAACATTGGACCTACATTC 57.278 39.130 14.18 0.00 44.82 2.67
3946 6737 5.144100 ACCAAAACATTGGACCTACATTCA 58.856 37.500 14.18 0.00 44.82 2.57
3947 6738 5.779771 ACCAAAACATTGGACCTACATTCAT 59.220 36.000 14.18 0.00 44.82 2.57
3948 6739 6.071391 ACCAAAACATTGGACCTACATTCATC 60.071 38.462 14.18 0.00 44.82 2.92
3949 6740 6.071447 CCAAAACATTGGACCTACATTCATCA 60.071 38.462 1.28 0.00 44.82 3.07
3950 6741 7.364056 CCAAAACATTGGACCTACATTCATCAT 60.364 37.037 1.28 0.00 44.82 2.45
3951 6742 6.949352 AACATTGGACCTACATTCATCATC 57.051 37.500 0.00 0.00 0.00 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 7.166473 CGGGTGTATCTAATACTAAAACGTGAC 59.834 40.741 0.00 0.00 36.70 3.67
25 26 8.970020 TCTTAAATTTGTCTAGATACGGGTGTA 58.030 33.333 0.00 0.00 34.45 2.90
27 28 7.762615 TGTCTTAAATTTGTCTAGATACGGGTG 59.237 37.037 0.00 0.00 0.00 4.61
29 30 8.712285 TTGTCTTAAATTTGTCTAGATACGGG 57.288 34.615 0.00 0.00 0.00 5.28
30 31 9.582431 TCTTGTCTTAAATTTGTCTAGATACGG 57.418 33.333 0.00 0.00 0.00 4.02
38 39 9.546428 CCCAAAATTCTTGTCTTAAATTTGTCT 57.454 29.630 0.00 0.00 33.95 3.41
40 41 9.325198 GTCCCAAAATTCTTGTCTTAAATTTGT 57.675 29.630 0.00 0.00 33.95 2.83
44 45 6.492087 TCCGTCCCAAAATTCTTGTCTTAAAT 59.508 34.615 0.00 0.00 0.00 1.40
45 46 5.828859 TCCGTCCCAAAATTCTTGTCTTAAA 59.171 36.000 0.00 0.00 0.00 1.52
46 47 5.378332 TCCGTCCCAAAATTCTTGTCTTAA 58.622 37.500 0.00 0.00 0.00 1.85
48 49 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
49 50 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
50 51 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
51 52 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
54 55 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
55 56 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
56 57 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
57 58 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
58 59 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
59 60 0.178926 TGTACTCCCTCCGTCCCAAA 60.179 55.000 0.00 0.00 0.00 3.28
60 61 0.178926 TTGTACTCCCTCCGTCCCAA 60.179 55.000 0.00 0.00 0.00 4.12
62 63 1.611474 GGTTGTACTCCCTCCGTCCC 61.611 65.000 0.00 0.00 0.00 4.46
63 64 0.901580 TGGTTGTACTCCCTCCGTCC 60.902 60.000 0.00 0.00 0.00 4.79
64 65 1.136500 GATGGTTGTACTCCCTCCGTC 59.864 57.143 0.00 0.00 0.00 4.79
65 66 1.192428 GATGGTTGTACTCCCTCCGT 58.808 55.000 0.00 0.00 0.00 4.69
66 67 1.137086 CTGATGGTTGTACTCCCTCCG 59.863 57.143 0.00 0.00 0.00 4.63
67 68 2.188817 ACTGATGGTTGTACTCCCTCC 58.811 52.381 0.00 0.00 0.00 4.30
68 69 3.983044 AACTGATGGTTGTACTCCCTC 57.017 47.619 0.00 0.74 36.70 4.30
70 71 7.773690 ACAATATAAACTGATGGTTGTACTCCC 59.226 37.037 0.00 0.00 38.29 4.30
72 73 8.612619 CCACAATATAAACTGATGGTTGTACTC 58.387 37.037 0.00 0.00 38.29 2.59
92 93 6.351286 GGGCATCTTTTATTTCTGACCACAAT 60.351 38.462 0.00 0.00 34.97 2.71
100 101 4.340381 CAGAGGGGGCATCTTTTATTTCTG 59.660 45.833 0.00 0.00 0.00 3.02
205 206 2.189342 GCTTCAGCTAGCAGTAACTCG 58.811 52.381 18.83 0.00 40.89 4.18
216 217 7.712639 CCTGATTAGAAATACTTGCTTCAGCTA 59.287 37.037 0.00 0.00 42.66 3.32
255 256 8.707839 GCAACAGCTATAATATTCTTCAGAGAC 58.292 37.037 0.00 0.00 0.00 3.36
256 257 8.424133 TGCAACAGCTATAATATTCTTCAGAGA 58.576 33.333 0.00 0.00 0.00 3.10
272 273 4.588899 ACTGTCCAATATTGCAACAGCTA 58.411 39.130 30.05 10.59 40.81 3.32
277 285 5.376854 AGTCAACTGTCCAATATTGCAAC 57.623 39.130 10.11 10.42 0.00 4.17
309 317 2.106338 TCTGCACTTCTTCACCCAATCA 59.894 45.455 0.00 0.00 0.00 2.57
316 324 5.177326 AGAGATTGATCTGCACTTCTTCAC 58.823 41.667 0.00 0.00 37.25 3.18
429 454 2.667171 CGCGGGTATTGACTTTTTGGTG 60.667 50.000 0.00 0.00 0.00 4.17
465 490 8.830201 ATAAGATATAAGCTTGCTTCTGTCTG 57.170 34.615 9.86 0.00 0.00 3.51
525 550 5.394553 CCAAGAACTGATCTATTTTTGGCCC 60.395 44.000 14.57 0.00 37.42 5.80
532 557 7.213178 ACCCATACCAAGAACTGATCTATTT 57.787 36.000 0.00 0.00 37.42 1.40
536 561 5.520748 AAACCCATACCAAGAACTGATCT 57.479 39.130 0.00 0.00 41.32 2.75
584 609 8.768397 TGTGAATCACCCTATGTTCTATTAGTT 58.232 33.333 11.24 0.00 32.73 2.24
588 613 7.437713 TCTGTGAATCACCCTATGTTCTATT 57.562 36.000 11.24 0.00 32.73 1.73
590 615 6.611236 TCATCTGTGAATCACCCTATGTTCTA 59.389 38.462 11.24 0.00 32.73 2.10
592 617 5.674525 TCATCTGTGAATCACCCTATGTTC 58.325 41.667 11.24 0.00 32.73 3.18
593 618 5.698741 TCATCTGTGAATCACCCTATGTT 57.301 39.130 11.24 0.00 32.73 2.71
598 623 3.843027 AGTCTTCATCTGTGAATCACCCT 59.157 43.478 11.24 0.00 43.08 4.34
599 624 3.937706 CAGTCTTCATCTGTGAATCACCC 59.062 47.826 11.24 0.00 43.08 4.61
603 628 5.105392 AGTCCTCAGTCTTCATCTGTGAATC 60.105 44.000 0.00 0.00 43.08 2.52
604 629 4.776837 AGTCCTCAGTCTTCATCTGTGAAT 59.223 41.667 0.00 0.00 43.08 2.57
606 631 3.509184 CAGTCCTCAGTCTTCATCTGTGA 59.491 47.826 0.00 0.00 34.86 3.58
607 632 3.368220 CCAGTCCTCAGTCTTCATCTGTG 60.368 52.174 0.00 0.00 34.86 3.66
608 633 2.830923 CCAGTCCTCAGTCTTCATCTGT 59.169 50.000 0.00 0.00 34.86 3.41
609 634 3.095332 TCCAGTCCTCAGTCTTCATCTG 58.905 50.000 0.00 0.00 0.00 2.90
612 637 1.821753 CGTCCAGTCCTCAGTCTTCAT 59.178 52.381 0.00 0.00 0.00 2.57
613 638 1.202891 TCGTCCAGTCCTCAGTCTTCA 60.203 52.381 0.00 0.00 0.00 3.02
616 641 3.367646 TTATCGTCCAGTCCTCAGTCT 57.632 47.619 0.00 0.00 0.00 3.24
618 643 3.576982 TGTTTTATCGTCCAGTCCTCAGT 59.423 43.478 0.00 0.00 0.00 3.41
620 645 4.819105 ATGTTTTATCGTCCAGTCCTCA 57.181 40.909 0.00 0.00 0.00 3.86
622 647 4.081862 TCGAATGTTTTATCGTCCAGTCCT 60.082 41.667 0.00 0.00 39.91 3.85
636 661 8.015658 GCAAGTCAAAGTAATACTCGAATGTTT 58.984 33.333 0.00 0.00 0.00 2.83
637 662 7.387948 AGCAAGTCAAAGTAATACTCGAATGTT 59.612 33.333 0.00 0.00 0.00 2.71
652 677 3.996150 ATGAACACCAGCAAGTCAAAG 57.004 42.857 0.00 0.00 0.00 2.77
735 764 8.746530 AGCAATCAGAGATGACAAAATTATTGT 58.253 29.630 5.92 5.92 34.97 2.71
877 3277 7.823745 TTATCTTATTTTCTGGGAATCAGCC 57.176 36.000 0.00 0.00 43.06 4.85
902 3302 4.402616 TTCTGGGGATCAACTTCCATTT 57.597 40.909 0.00 0.00 37.53 2.32
939 3339 2.584492 AACTGCCAACTTGCTTGTTC 57.416 45.000 0.00 0.00 0.00 3.18
1000 3400 6.318648 ACACGCATCAACCAGTGATTTAATAT 59.681 34.615 1.24 0.00 45.13 1.28
1001 3401 5.645929 ACACGCATCAACCAGTGATTTAATA 59.354 36.000 1.24 0.00 45.13 0.98
1002 3402 4.458989 ACACGCATCAACCAGTGATTTAAT 59.541 37.500 1.24 0.00 45.13 1.40
1003 3403 3.818210 ACACGCATCAACCAGTGATTTAA 59.182 39.130 1.24 0.00 45.13 1.52
1015 3415 0.319986 TAGCCAACGACACGCATCAA 60.320 50.000 0.00 0.00 0.00 2.57
1059 3466 7.829211 GGCTACCTCATATCTTTTGGCATATAA 59.171 37.037 0.00 0.00 0.00 0.98
1074 3484 4.402793 GTCTTCTGTTCTGGCTACCTCATA 59.597 45.833 0.00 0.00 0.00 2.15
1107 3517 1.204146 GAGATGCTACTGGTTCCCCA 58.796 55.000 0.00 0.00 38.87 4.96
1282 3698 1.051812 GGTCGATGATGGGGATCTGT 58.948 55.000 0.00 0.00 0.00 3.41
1396 3828 0.749818 TGTGAGCCAAGCCAACGAAA 60.750 50.000 0.00 0.00 0.00 3.46
1470 3938 8.409358 TGATGAGGCGCACATATATAGTATAT 57.591 34.615 10.83 7.78 0.00 0.86
1476 3955 4.651045 AGGATGATGAGGCGCACATATATA 59.349 41.667 10.83 2.88 0.00 0.86
1477 3956 3.453717 AGGATGATGAGGCGCACATATAT 59.546 43.478 10.83 11.80 0.00 0.86
1478 3957 2.833943 AGGATGATGAGGCGCACATATA 59.166 45.455 10.83 7.60 0.00 0.86
1479 3958 1.627329 AGGATGATGAGGCGCACATAT 59.373 47.619 10.83 8.67 0.00 1.78
1480 3959 1.051008 AGGATGATGAGGCGCACATA 58.949 50.000 10.83 4.41 0.00 2.29
1481 3960 0.534427 CAGGATGATGAGGCGCACAT 60.534 55.000 16.85 16.85 39.69 3.21
1482 3961 1.153309 CAGGATGATGAGGCGCACA 60.153 57.895 10.83 9.62 39.69 4.57
1483 3962 1.144716 TCAGGATGATGAGGCGCAC 59.855 57.895 10.83 2.81 42.56 5.34
1484 3963 3.632896 TCAGGATGATGAGGCGCA 58.367 55.556 10.83 0.00 42.56 6.09
1727 4206 1.153208 CCTCATCTCAGGTGGCTGC 60.153 63.158 0.00 0.00 0.00 5.25
1789 4268 6.812656 AGAAGAATATCATCGCAATCTAGCTG 59.187 38.462 0.00 0.00 0.00 4.24
1816 4295 3.229271 TGACAGACACAGGCAGCA 58.771 55.556 0.00 0.00 0.00 4.41
1874 4362 1.202302 GCCGATCTGAATGAGACGACA 60.202 52.381 0.00 0.00 31.75 4.35
1943 4431 0.905357 AGTTCTTGGCCATCGTAGCT 59.095 50.000 6.09 0.00 0.00 3.32
2090 4578 2.257207 TGGAGGACAAGTGTTAGGAGG 58.743 52.381 0.00 0.00 0.00 4.30
2294 4782 2.608623 TCTAGCTAGCATATGGCCACA 58.391 47.619 18.83 0.00 46.50 4.17
2296 4784 4.916041 AAATCTAGCTAGCATATGGCCA 57.084 40.909 18.83 8.56 46.50 5.36
2299 4787 4.093998 CGGCAAAATCTAGCTAGCATATGG 59.906 45.833 18.83 0.00 0.00 2.74
2321 4810 3.205338 TGGTTGATGATATGCCAGTTCG 58.795 45.455 0.00 0.00 0.00 3.95
2350 4839 6.290489 GCAAAACAAACAACGAAAATGCATTC 60.290 34.615 13.38 0.56 0.00 2.67
2438 4930 2.033194 GCCGTTCTTCCTTCGGGTG 61.033 63.158 5.06 0.00 43.77 4.61
2467 4959 1.698506 TGTTTGGGAATTGGAACGCT 58.301 45.000 0.00 0.00 0.00 5.07
2596 5088 2.039613 CTGCTCCAAGAAGTTCTTCCCT 59.960 50.000 15.35 0.00 33.78 4.20
2646 5138 0.251608 ATACGCCCAAGCCCAACTTT 60.252 50.000 0.00 0.00 36.04 2.66
2698 5190 3.822735 CAGTTCATTGGAAAGAAGAGCCA 59.177 43.478 0.00 0.00 34.13 4.75
2718 5210 2.610694 CGGTGCAAGCAGTGTCCAG 61.611 63.158 0.00 0.00 0.00 3.86
2734 5226 0.250513 CTCCCCAAAGAGAACTCCGG 59.749 60.000 0.00 0.00 35.82 5.14
2748 5240 4.558226 AAAGATGAAATTTTGCCTCCCC 57.442 40.909 0.00 0.00 0.00 4.81
2806 5298 0.321210 CACCGAGTTATGGGCACACA 60.321 55.000 0.00 0.00 0.00 3.72
2815 5307 2.180204 GCATGCGCCACCGAGTTAT 61.180 57.895 4.18 0.00 36.29 1.89
2862 5354 1.258445 ACAAGGTACCTCGCTCCCAG 61.258 60.000 16.64 0.86 0.00 4.45
2863 5355 0.040058 TACAAGGTACCTCGCTCCCA 59.960 55.000 16.64 0.00 0.00 4.37
2869 5361 1.134907 ACGCCAATACAAGGTACCTCG 60.135 52.381 16.64 14.05 0.00 4.63
2888 5380 2.612212 ACAATGTCAGGAACAACGTCAC 59.388 45.455 0.00 0.00 42.37 3.67
2894 5386 6.875726 CAGAGAAGATACAATGTCAGGAACAA 59.124 38.462 0.00 0.00 42.37 2.83
2905 5397 4.965532 ACTAGCCACCAGAGAAGATACAAT 59.034 41.667 0.00 0.00 0.00 2.71
2933 5425 5.922739 TTATTAACATACGGATGCAGCTG 57.077 39.130 9.77 9.77 36.43 4.24
2989 5491 3.197983 GGTTCATTACCTGCTCTGGTAGT 59.802 47.826 5.92 1.51 44.10 2.73
3006 5513 1.808531 GCCTGCAACAGCATGGTTCA 61.809 55.000 0.00 0.00 43.62 3.18
3015 5522 2.230508 ACAAGAATGATGCCTGCAACAG 59.769 45.455 8.09 0.00 32.46 3.16
3068 5575 0.323302 TGTCTGCAAGCCGATACCAA 59.677 50.000 0.00 0.00 0.00 3.67
3069 5576 0.108186 CTGTCTGCAAGCCGATACCA 60.108 55.000 0.00 0.00 0.00 3.25
3095 5602 5.126396 AGGAAACTGCAATTTTAGAGCAC 57.874 39.130 0.00 0.00 41.13 4.40
3133 5640 2.113910 GCTCTAGCAAGACGACTAGC 57.886 55.000 0.00 0.00 41.59 3.42
3146 5653 5.581126 AGTTCAGATCTCTTGTGCTCTAG 57.419 43.478 0.00 0.00 0.00 2.43
3177 5684 6.638063 CACACACTGAAACCACAATATTGAAG 59.362 38.462 22.16 13.92 0.00 3.02
3178 5685 6.460814 CCACACACTGAAACCACAATATTGAA 60.461 38.462 22.16 0.00 0.00 2.69
3179 5686 5.009510 CCACACACTGAAACCACAATATTGA 59.990 40.000 22.16 0.00 0.00 2.57
3180 5687 5.221224 ACCACACACTGAAACCACAATATTG 60.221 40.000 14.01 14.01 0.00 1.90
3181 5688 4.892934 ACCACACACTGAAACCACAATATT 59.107 37.500 0.00 0.00 0.00 1.28
3244 5751 9.953565 ACTGCCTATGTAAAAACAATCTAGTAA 57.046 29.630 0.00 0.00 0.00 2.24
3245 5752 9.953565 AACTGCCTATGTAAAAACAATCTAGTA 57.046 29.630 0.00 0.00 0.00 1.82
3251 5758 8.644374 TTCCTAACTGCCTATGTAAAAACAAT 57.356 30.769 0.00 0.00 0.00 2.71
3252 5759 7.175990 CCTTCCTAACTGCCTATGTAAAAACAA 59.824 37.037 0.00 0.00 0.00 2.83
3254 5761 6.882678 TCCTTCCTAACTGCCTATGTAAAAAC 59.117 38.462 0.00 0.00 0.00 2.43
3256 5763 6.630203 TCCTTCCTAACTGCCTATGTAAAA 57.370 37.500 0.00 0.00 0.00 1.52
3257 5764 6.630203 TTCCTTCCTAACTGCCTATGTAAA 57.370 37.500 0.00 0.00 0.00 2.01
3260 6035 5.514500 TTTTCCTTCCTAACTGCCTATGT 57.486 39.130 0.00 0.00 0.00 2.29
3320 6095 7.652105 ACGGCACTATGTATATGTTGAGTAAAG 59.348 37.037 0.00 0.00 0.00 1.85
3322 6097 7.046292 ACGGCACTATGTATATGTTGAGTAA 57.954 36.000 0.00 0.00 0.00 2.24
3336 6111 7.223971 ACACACTACATTAATAACGGCACTATG 59.776 37.037 0.00 0.00 0.00 2.23
3338 6113 6.632909 ACACACTACATTAATAACGGCACTA 58.367 36.000 0.00 0.00 0.00 2.74
3351 6126 8.535335 ACATGAGATAAGAGAACACACTACATT 58.465 33.333 0.00 0.00 0.00 2.71
3357 6132 5.809562 CAGGACATGAGATAAGAGAACACAC 59.190 44.000 0.00 0.00 0.00 3.82
3358 6133 5.481824 ACAGGACATGAGATAAGAGAACACA 59.518 40.000 0.00 0.00 0.00 3.72
3359 6134 5.971763 ACAGGACATGAGATAAGAGAACAC 58.028 41.667 0.00 0.00 0.00 3.32
3360 6135 5.716703 TGACAGGACATGAGATAAGAGAACA 59.283 40.000 0.00 0.00 0.00 3.18
3374 6151 2.371841 TGTTAGCAGGTTGACAGGACAT 59.628 45.455 0.00 0.00 0.00 3.06
3378 6155 3.149196 ACATTGTTAGCAGGTTGACAGG 58.851 45.455 0.00 0.00 0.00 4.00
3401 6178 2.711009 TGGGTCTGTCTGAAAACAGGAT 59.289 45.455 4.36 0.00 45.47 3.24
3414 6191 1.204146 ATTATCGCAGGTGGGTCTGT 58.796 50.000 0.00 0.00 37.12 3.41
3419 6196 1.873591 GCTACAATTATCGCAGGTGGG 59.126 52.381 0.00 0.00 0.00 4.61
3510 6296 1.209640 GAGTGGTCACCTCGTCGAC 59.790 63.158 5.18 5.18 0.00 4.20
3526 6312 0.674895 CTTGGGGCCGAAGAACAGAG 60.675 60.000 22.39 0.00 0.00 3.35
3529 6315 2.282180 GCTTGGGGCCGAAGAACA 60.282 61.111 29.66 2.86 34.27 3.18
3538 6324 2.268762 TGAAAATTTTGGCTTGGGGC 57.731 45.000 8.47 0.00 40.90 5.80
3552 6341 9.836864 AAGATATGTAGACACTGCATATGAAAA 57.163 29.630 20.58 0.41 45.10 2.29
3584 6373 0.925466 CAAGCAAATAAGCATGGCGC 59.075 50.000 0.00 0.00 42.91 6.53
3672 6462 4.722361 ATCTTACGAAGGGAGTTCACTC 57.278 45.455 0.00 0.00 42.14 3.51
3695 6486 7.882791 TGCCACCGATGATGTATAAGAATTTAT 59.117 33.333 0.00 0.00 34.04 1.40
3710 6501 0.390492 CATAGAGCTGCCACCGATGA 59.610 55.000 0.00 0.00 0.00 2.92
3715 6506 2.512896 CCCCATAGAGCTGCCACC 59.487 66.667 0.00 0.00 0.00 4.61
3716 6507 2.049627 CTCCCCCATAGAGCTGCCAC 62.050 65.000 0.00 0.00 0.00 5.01
3717 6508 1.767672 CTCCCCCATAGAGCTGCCA 60.768 63.158 0.00 0.00 0.00 4.92
3718 6509 2.524204 CCTCCCCCATAGAGCTGCC 61.524 68.421 0.00 0.00 0.00 4.85
3719 6510 0.839853 ATCCTCCCCCATAGAGCTGC 60.840 60.000 0.00 0.00 0.00 5.25
3720 6511 2.043664 TCTATCCTCCCCCATAGAGCTG 59.956 54.545 0.00 0.00 29.82 4.24
3721 6512 2.373174 TCTATCCTCCCCCATAGAGCT 58.627 52.381 0.00 0.00 29.82 4.09
3722 6513 2.930109 TCTATCCTCCCCCATAGAGC 57.070 55.000 0.00 0.00 29.82 4.09
3723 6514 3.374762 GGGATCTATCCTCCCCCATAGAG 60.375 56.522 8.85 0.00 45.80 2.43
3724 6515 2.592512 GGGATCTATCCTCCCCCATAGA 59.407 54.545 8.85 0.00 45.80 1.98
3725 6516 3.053359 GGGATCTATCCTCCCCCATAG 57.947 57.143 8.85 0.00 45.80 2.23
3734 6525 4.981647 TGGTTACAAATGGGGATCTATCCT 59.018 41.667 8.85 0.00 46.35 3.24
3735 6526 5.319043 TGGTTACAAATGGGGATCTATCC 57.681 43.478 0.00 0.00 46.41 2.59
3736 6527 7.725844 AGAAATGGTTACAAATGGGGATCTATC 59.274 37.037 0.00 0.00 0.00 2.08
3737 6528 7.595488 AGAAATGGTTACAAATGGGGATCTAT 58.405 34.615 0.00 0.00 0.00 1.98
3738 6529 6.980577 AGAAATGGTTACAAATGGGGATCTA 58.019 36.000 0.00 0.00 0.00 1.98
3739 6530 5.842339 AGAAATGGTTACAAATGGGGATCT 58.158 37.500 0.00 0.00 0.00 2.75
3740 6531 7.342026 AGTTAGAAATGGTTACAAATGGGGATC 59.658 37.037 0.00 0.00 0.00 3.36
3741 6532 7.189087 AGTTAGAAATGGTTACAAATGGGGAT 58.811 34.615 0.00 0.00 0.00 3.85
3742 6533 6.557568 AGTTAGAAATGGTTACAAATGGGGA 58.442 36.000 0.00 0.00 0.00 4.81
3743 6534 6.435904 TGAGTTAGAAATGGTTACAAATGGGG 59.564 38.462 0.00 0.00 0.00 4.96
3744 6535 7.461182 TGAGTTAGAAATGGTTACAAATGGG 57.539 36.000 0.00 0.00 0.00 4.00
3753 6544 9.388506 CTGATGAGTTATGAGTTAGAAATGGTT 57.611 33.333 0.00 0.00 0.00 3.67
3754 6545 7.989741 CCTGATGAGTTATGAGTTAGAAATGGT 59.010 37.037 0.00 0.00 0.00 3.55
3755 6546 8.206867 TCCTGATGAGTTATGAGTTAGAAATGG 58.793 37.037 0.00 0.00 0.00 3.16
3756 6547 9.775854 ATCCTGATGAGTTATGAGTTAGAAATG 57.224 33.333 0.00 0.00 0.00 2.32
3761 6552 9.149225 GCATAATCCTGATGAGTTATGAGTTAG 57.851 37.037 6.69 0.00 36.92 2.34
3762 6553 8.097038 GGCATAATCCTGATGAGTTATGAGTTA 58.903 37.037 6.69 0.00 36.92 2.24
3763 6554 6.939163 GGCATAATCCTGATGAGTTATGAGTT 59.061 38.462 6.69 0.00 36.92 3.01
3764 6555 6.043590 TGGCATAATCCTGATGAGTTATGAGT 59.956 38.462 6.69 0.00 36.92 3.41
3765 6556 6.470278 TGGCATAATCCTGATGAGTTATGAG 58.530 40.000 6.69 0.00 36.92 2.90
3766 6557 6.438186 TGGCATAATCCTGATGAGTTATGA 57.562 37.500 6.69 0.00 36.92 2.15
3767 6558 7.110810 AGATGGCATAATCCTGATGAGTTATG 58.889 38.462 0.00 0.00 37.51 1.90
3768 6559 7.268212 AGATGGCATAATCCTGATGAGTTAT 57.732 36.000 0.00 0.00 0.00 1.89
3769 6560 6.692849 AGATGGCATAATCCTGATGAGTTA 57.307 37.500 0.00 0.00 0.00 2.24
3770 6561 5.579753 AGATGGCATAATCCTGATGAGTT 57.420 39.130 0.00 0.00 0.00 3.01
3771 6562 5.579753 AAGATGGCATAATCCTGATGAGT 57.420 39.130 0.00 0.00 0.00 3.41
3772 6563 7.336396 TCATAAGATGGCATAATCCTGATGAG 58.664 38.462 0.00 0.00 0.00 2.90
3773 6564 7.261688 TCATAAGATGGCATAATCCTGATGA 57.738 36.000 0.00 4.94 0.00 2.92
3774 6565 7.392393 TGTTCATAAGATGGCATAATCCTGATG 59.608 37.037 0.00 2.41 0.00 3.07
3775 6566 7.464273 TGTTCATAAGATGGCATAATCCTGAT 58.536 34.615 0.00 0.00 0.00 2.90
3776 6567 6.840527 TGTTCATAAGATGGCATAATCCTGA 58.159 36.000 0.00 0.00 0.00 3.86
3777 6568 7.698506 ATGTTCATAAGATGGCATAATCCTG 57.301 36.000 0.00 0.00 0.00 3.86
3778 6569 8.385491 TGTATGTTCATAAGATGGCATAATCCT 58.615 33.333 0.00 0.00 33.71 3.24
3779 6570 8.565896 TGTATGTTCATAAGATGGCATAATCC 57.434 34.615 0.00 0.00 33.71 3.01
3784 6575 9.797642 TCTATTTGTATGTTCATAAGATGGCAT 57.202 29.630 0.00 0.00 33.42 4.40
3785 6576 9.625747 TTCTATTTGTATGTTCATAAGATGGCA 57.374 29.630 0.00 0.00 0.00 4.92
3794 6585 9.784531 ATCGAGGAATTCTATTTGTATGTTCAT 57.215 29.630 5.23 0.00 0.00 2.57
3795 6586 9.045223 CATCGAGGAATTCTATTTGTATGTTCA 57.955 33.333 5.23 0.00 0.00 3.18
3796 6587 9.046296 ACATCGAGGAATTCTATTTGTATGTTC 57.954 33.333 3.06 0.00 0.00 3.18
3797 6588 8.964476 ACATCGAGGAATTCTATTTGTATGTT 57.036 30.769 3.06 0.00 0.00 2.71
3798 6589 8.204160 TGACATCGAGGAATTCTATTTGTATGT 58.796 33.333 3.06 6.68 0.00 2.29
3799 6590 8.491152 GTGACATCGAGGAATTCTATTTGTATG 58.509 37.037 3.06 3.84 0.00 2.39
3800 6591 8.424918 AGTGACATCGAGGAATTCTATTTGTAT 58.575 33.333 3.06 0.00 0.00 2.29
3801 6592 7.782049 AGTGACATCGAGGAATTCTATTTGTA 58.218 34.615 3.06 0.00 0.00 2.41
3802 6593 6.644347 AGTGACATCGAGGAATTCTATTTGT 58.356 36.000 3.06 3.70 0.00 2.83
3803 6594 7.404985 CAAGTGACATCGAGGAATTCTATTTG 58.595 38.462 3.06 0.60 0.00 2.32
3804 6595 6.037610 GCAAGTGACATCGAGGAATTCTATTT 59.962 38.462 3.06 0.00 0.00 1.40
3805 6596 5.525378 GCAAGTGACATCGAGGAATTCTATT 59.475 40.000 3.06 0.00 0.00 1.73
3806 6597 5.053145 GCAAGTGACATCGAGGAATTCTAT 58.947 41.667 3.06 0.00 0.00 1.98
3807 6598 4.433615 GCAAGTGACATCGAGGAATTCTA 58.566 43.478 3.06 0.00 0.00 2.10
3808 6599 3.265791 GCAAGTGACATCGAGGAATTCT 58.734 45.455 3.06 0.00 0.00 2.40
3809 6600 2.029728 CGCAAGTGACATCGAGGAATTC 59.970 50.000 3.06 0.00 0.00 2.17
3810 6601 2.002586 CGCAAGTGACATCGAGGAATT 58.997 47.619 3.06 0.00 0.00 2.17
3811 6602 1.645034 CGCAAGTGACATCGAGGAAT 58.355 50.000 3.06 0.00 0.00 3.01
3812 6603 0.389817 CCGCAAGTGACATCGAGGAA 60.390 55.000 3.06 0.00 0.00 3.36
3813 6604 1.215382 CCGCAAGTGACATCGAGGA 59.785 57.895 3.06 0.00 0.00 3.71
3814 6605 1.811266 CCCGCAAGTGACATCGAGG 60.811 63.158 0.00 0.00 0.00 4.63
3815 6606 0.389817 TTCCCGCAAGTGACATCGAG 60.390 55.000 0.00 0.00 0.00 4.04
3816 6607 0.249120 ATTCCCGCAAGTGACATCGA 59.751 50.000 0.00 0.00 0.00 3.59
3817 6608 1.934589 TATTCCCGCAAGTGACATCG 58.065 50.000 0.00 0.00 0.00 3.84
3818 6609 2.808543 GGATATTCCCGCAAGTGACATC 59.191 50.000 0.00 0.00 0.00 3.06
3819 6610 2.172505 TGGATATTCCCGCAAGTGACAT 59.827 45.455 0.00 0.00 35.03 3.06
3820 6611 1.557371 TGGATATTCCCGCAAGTGACA 59.443 47.619 0.00 0.00 35.03 3.58
3821 6612 1.940613 GTGGATATTCCCGCAAGTGAC 59.059 52.381 0.00 0.00 35.03 3.67
3822 6613 1.134220 GGTGGATATTCCCGCAAGTGA 60.134 52.381 0.00 0.00 38.42 3.41
3823 6614 1.308998 GGTGGATATTCCCGCAAGTG 58.691 55.000 0.00 0.00 38.42 3.16
3824 6615 0.916086 TGGTGGATATTCCCGCAAGT 59.084 50.000 0.00 0.00 38.42 3.16
3825 6616 1.881973 CATGGTGGATATTCCCGCAAG 59.118 52.381 0.00 0.00 38.42 4.01
3826 6617 1.478471 CCATGGTGGATATTCCCGCAA 60.478 52.381 2.57 0.00 40.96 4.85
3827 6618 0.110295 CCATGGTGGATATTCCCGCA 59.890 55.000 2.57 0.00 40.96 5.69
3828 6619 0.400213 TCCATGGTGGATATTCCCGC 59.600 55.000 12.58 0.00 42.67 6.13
3838 6629 6.423182 TCTTCCTTAGTTAAATCCATGGTGG 58.577 40.000 12.58 0.00 39.43 4.61
3839 6630 7.775093 TGATCTTCCTTAGTTAAATCCATGGTG 59.225 37.037 12.58 0.00 0.00 4.17
3840 6631 7.872138 TGATCTTCCTTAGTTAAATCCATGGT 58.128 34.615 12.58 0.00 0.00 3.55
3841 6632 8.930846 ATGATCTTCCTTAGTTAAATCCATGG 57.069 34.615 4.97 4.97 0.00 3.66
3842 6633 8.715998 CGATGATCTTCCTTAGTTAAATCCATG 58.284 37.037 3.19 0.00 0.00 3.66
3843 6634 8.432805 ACGATGATCTTCCTTAGTTAAATCCAT 58.567 33.333 3.19 0.00 0.00 3.41
3844 6635 7.792032 ACGATGATCTTCCTTAGTTAAATCCA 58.208 34.615 3.19 0.00 0.00 3.41
3845 6636 7.926555 TGACGATGATCTTCCTTAGTTAAATCC 59.073 37.037 3.19 0.00 0.00 3.01
3846 6637 8.873215 TGACGATGATCTTCCTTAGTTAAATC 57.127 34.615 3.19 0.00 0.00 2.17
3847 6638 9.667107 TTTGACGATGATCTTCCTTAGTTAAAT 57.333 29.630 3.19 0.00 0.00 1.40
3848 6639 9.496873 TTTTGACGATGATCTTCCTTAGTTAAA 57.503 29.630 3.19 2.79 0.00 1.52
3849 6640 9.496873 TTTTTGACGATGATCTTCCTTAGTTAA 57.503 29.630 3.19 0.00 0.00 2.01
3850 6641 9.667107 ATTTTTGACGATGATCTTCCTTAGTTA 57.333 29.630 3.19 0.00 0.00 2.24
3851 6642 7.979444 TTTTTGACGATGATCTTCCTTAGTT 57.021 32.000 3.19 0.00 0.00 2.24
3852 6643 8.567285 AATTTTTGACGATGATCTTCCTTAGT 57.433 30.769 3.19 0.00 0.00 2.24
3855 6646 9.014297 ACTTAATTTTTGACGATGATCTTCCTT 57.986 29.630 3.19 0.00 0.00 3.36
3856 6647 8.454106 CACTTAATTTTTGACGATGATCTTCCT 58.546 33.333 3.19 0.00 0.00 3.36
3857 6648 7.218963 GCACTTAATTTTTGACGATGATCTTCC 59.781 37.037 3.19 0.00 0.00 3.46
3858 6649 7.965107 AGCACTTAATTTTTGACGATGATCTTC 59.035 33.333 0.00 0.00 0.00 2.87
3859 6650 7.820648 AGCACTTAATTTTTGACGATGATCTT 58.179 30.769 0.00 0.00 0.00 2.40
3860 6651 7.383102 AGCACTTAATTTTTGACGATGATCT 57.617 32.000 0.00 0.00 0.00 2.75
3861 6652 8.391106 AGTAGCACTTAATTTTTGACGATGATC 58.609 33.333 0.00 0.00 0.00 2.92
3862 6653 8.268850 AGTAGCACTTAATTTTTGACGATGAT 57.731 30.769 0.00 0.00 0.00 2.45
3863 6654 7.386573 TGAGTAGCACTTAATTTTTGACGATGA 59.613 33.333 0.00 0.00 0.00 2.92
3864 6655 7.518161 TGAGTAGCACTTAATTTTTGACGATG 58.482 34.615 0.00 0.00 0.00 3.84
3865 6656 7.667043 TGAGTAGCACTTAATTTTTGACGAT 57.333 32.000 0.00 0.00 0.00 3.73
3866 6657 7.667043 ATGAGTAGCACTTAATTTTTGACGA 57.333 32.000 0.00 0.00 0.00 4.20
3867 6658 9.425893 CATATGAGTAGCACTTAATTTTTGACG 57.574 33.333 0.00 0.00 0.00 4.35
3876 6667 8.029522 GCAGCTATACATATGAGTAGCACTTAA 58.970 37.037 28.65 0.00 41.44 1.85
3877 6668 7.539436 GCAGCTATACATATGAGTAGCACTTA 58.461 38.462 28.65 6.62 41.44 2.24
3878 6669 6.393990 GCAGCTATACATATGAGTAGCACTT 58.606 40.000 28.65 16.07 41.44 3.16
3879 6670 5.392487 CGCAGCTATACATATGAGTAGCACT 60.392 44.000 28.65 16.53 41.44 4.40
3880 6671 4.795795 CGCAGCTATACATATGAGTAGCAC 59.204 45.833 28.65 22.67 41.44 4.40
3881 6672 4.986622 CGCAGCTATACATATGAGTAGCA 58.013 43.478 28.65 5.93 41.44 3.49
3899 6690 2.417586 TCATGTGAATTCTTCAGCGCAG 59.582 45.455 11.47 0.00 41.01 5.18
3900 6691 2.425539 TCATGTGAATTCTTCAGCGCA 58.574 42.857 11.47 0.00 41.01 6.09
3901 6692 3.476295 TTCATGTGAATTCTTCAGCGC 57.524 42.857 7.05 0.00 41.01 5.92
3902 6693 4.618489 GGTTTTCATGTGAATTCTTCAGCG 59.382 41.667 7.05 2.91 41.01 5.18
3903 6694 5.531634 TGGTTTTCATGTGAATTCTTCAGC 58.468 37.500 7.05 0.00 41.01 4.26
3904 6695 8.330302 GTTTTGGTTTTCATGTGAATTCTTCAG 58.670 33.333 7.05 0.00 41.01 3.02
3905 6696 7.821359 TGTTTTGGTTTTCATGTGAATTCTTCA 59.179 29.630 7.05 6.68 37.33 3.02
3906 6697 8.195617 TGTTTTGGTTTTCATGTGAATTCTTC 57.804 30.769 7.05 0.90 33.54 2.87
3907 6698 8.735692 ATGTTTTGGTTTTCATGTGAATTCTT 57.264 26.923 7.05 0.00 33.54 2.52
3908 6699 8.614346 CAATGTTTTGGTTTTCATGTGAATTCT 58.386 29.630 7.05 0.00 33.54 2.40
3909 6700 7.856894 CCAATGTTTTGGTTTTCATGTGAATTC 59.143 33.333 0.00 0.00 46.27 2.17
3910 6701 7.705214 CCAATGTTTTGGTTTTCATGTGAATT 58.295 30.769 0.00 0.00 46.27 2.17
3911 6702 7.261829 CCAATGTTTTGGTTTTCATGTGAAT 57.738 32.000 0.00 0.00 46.27 2.57
3912 6703 6.674694 CCAATGTTTTGGTTTTCATGTGAA 57.325 33.333 0.00 0.00 46.27 3.18
3925 6716 6.923012 TGATGAATGTAGGTCCAATGTTTTG 58.077 36.000 0.00 0.00 0.00 2.44
3926 6717 7.722949 ATGATGAATGTAGGTCCAATGTTTT 57.277 32.000 0.00 0.00 0.00 2.43
3927 6718 7.338800 GATGATGAATGTAGGTCCAATGTTT 57.661 36.000 0.00 0.00 0.00 2.83
3928 6719 6.949352 GATGATGAATGTAGGTCCAATGTT 57.051 37.500 0.00 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.