Multiple sequence alignment - TraesCS3D01G529800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G529800 chr3D 100.000 3041 0 0 1 3041 606929041 606932081 0.000000e+00 5616.0
1 TraesCS3D01G529800 chr3D 91.146 1954 125 16 746 2669 607310709 607308774 0.000000e+00 2606.0
2 TraesCS3D01G529800 chr3D 93.396 212 12 1 2774 2983 607308576 607308365 2.280000e-81 313.0
3 TraesCS3D01G529800 chr3D 90.426 94 3 2 2694 2781 607308703 607308610 5.330000e-23 119.0
4 TraesCS3D01G529800 chr3D 88.889 81 9 0 12 92 607314012 607313932 1.930000e-17 100.0
5 TraesCS3D01G529800 chr3D 98.039 51 1 0 2175 2225 606931147 606931197 4.180000e-14 89.8
6 TraesCS3D01G529800 chr3D 98.039 51 1 0 2107 2157 606931215 606931265 4.180000e-14 89.8
7 TraesCS3D01G529800 chr3B 93.950 1438 59 9 615 2044 816264216 816265633 0.000000e+00 2148.0
8 TraesCS3D01G529800 chr3B 90.565 1505 103 14 683 2155 816692410 816690913 0.000000e+00 1956.0
9 TraesCS3D01G529800 chr3B 86.667 450 31 10 2175 2623 816265658 816266079 3.550000e-129 472.0
10 TraesCS3D01G529800 chr3B 91.558 308 21 3 2175 2477 816690962 816690655 1.300000e-113 420.0
11 TraesCS3D01G529800 chr3B 92.511 227 11 5 2771 2991 816271940 816272166 1.360000e-83 320.0
12 TraesCS3D01G529800 chr3B 90.254 236 13 5 2774 2999 816690318 816690083 1.770000e-77 300.0
13 TraesCS3D01G529800 chr3B 92.045 88 7 0 2694 2781 816690440 816690353 1.140000e-24 124.0
14 TraesCS3D01G529800 chr3B 93.333 75 5 0 2083 2157 816265634 816265708 8.910000e-21 111.0
15 TraesCS3D01G529800 chr3A 90.167 1495 116 14 683 2157 739735362 739733879 0.000000e+00 1917.0
16 TraesCS3D01G529800 chr3A 88.878 1007 58 10 615 1600 739322213 739323186 0.000000e+00 1190.0
17 TraesCS3D01G529800 chr3A 88.679 689 37 6 1997 2658 739325239 739325913 0.000000e+00 802.0
18 TraesCS3D01G529800 chr3A 82.390 636 66 25 1541 2157 739323191 739323799 2.090000e-141 512.0
19 TraesCS3D01G529800 chr3A 88.123 261 17 5 2252 2501 739733810 739733553 6.370000e-77 298.0
20 TraesCS3D01G529800 chr3A 78.533 368 38 21 47 380 739321857 739322217 1.430000e-48 204.0
21 TraesCS3D01G529800 chr3A 86.624 157 16 5 2886 3041 739324408 739324560 5.210000e-38 169.0
22 TraesCS3D01G529800 chr3A 94.495 109 6 0 2775 2883 739326111 739326219 5.210000e-38 169.0
23 TraesCS3D01G529800 chr3A 81.726 197 25 9 2847 3039 739733117 739732928 1.460000e-33 154.0
24 TraesCS3D01G529800 chr3A 85.161 155 11 3 2527 2669 739733558 739733404 6.790000e-32 148.0
25 TraesCS3D01G529800 chr3A 96.552 87 3 0 2694 2780 739733333 739733247 8.790000e-31 145.0
26 TraesCS3D01G529800 chr3A 94.286 70 3 1 2714 2782 739326009 739326078 4.150000e-19 106.0
27 TraesCS3D01G529800 chr3A 90.123 81 8 0 12 92 739737934 739737854 4.150000e-19 106.0
28 TraesCS3D01G529800 chr3A 98.246 57 1 0 2101 2157 739325411 739325467 1.930000e-17 100.0
29 TraesCS3D01G529800 chr3A 84.694 98 13 2 12 107 499272702 499272605 2.500000e-16 97.1
30 TraesCS3D01G529800 chr3A 86.207 87 12 0 6 92 51519196 51519282 8.980000e-16 95.3
31 TraesCS3D01G529800 chr1A 82.578 1435 172 34 682 2064 406189444 406190852 0.000000e+00 1194.0
32 TraesCS3D01G529800 chr1A 81.534 352 53 12 332 681 406189062 406189403 2.310000e-71 279.0
33 TraesCS3D01G529800 chr1B 82.744 1414 159 39 694 2064 327024632 327023261 0.000000e+00 1181.0
34 TraesCS3D01G529800 chr1B 84.294 885 101 21 694 1550 435194091 435194965 0.000000e+00 830.0
35 TraesCS3D01G529800 chr1B 83.085 402 43 8 1672 2064 435195411 435195796 2.900000e-90 342.0
36 TraesCS3D01G529800 chr1B 82.768 354 50 10 335 687 327025022 327024679 3.810000e-79 305.0
37 TraesCS3D01G529800 chr1D 85.039 889 95 19 694 1550 227130925 227130043 0.000000e+00 870.0
38 TraesCS3D01G529800 chr1D 83.532 419 44 8 1655 2064 227129632 227129230 4.790000e-98 368.0
39 TraesCS3D01G529800 chr1D 82.203 354 48 11 335 687 227131311 227130972 1.070000e-74 291.0
40 TraesCS3D01G529800 chr1D 81.020 353 55 12 332 681 322284719 322285062 1.390000e-68 270.0
41 TraesCS3D01G529800 chr1D 88.889 81 9 0 12 92 78088472 78088392 1.930000e-17 100.0
42 TraesCS3D01G529800 chr7D 97.778 90 0 2 2912 2999 44702638 44702549 1.460000e-33 154.0
43 TraesCS3D01G529800 chr7D 97.778 90 0 2 2912 2999 45271727 45271816 1.460000e-33 154.0
44 TraesCS3D01G529800 chr7D 87.654 81 10 0 12 92 94211973 94211893 8.980000e-16 95.3
45 TraesCS3D01G529800 chr4A 97.727 88 0 2 2912 2999 656488767 656488682 1.890000e-32 150.0
46 TraesCS3D01G529800 chr4A 94.681 94 4 1 2898 2991 655448575 655448483 8.790000e-31 145.0
47 TraesCS3D01G529800 chr4A 86.585 82 11 0 12 93 228766910 228766991 1.160000e-14 91.6
48 TraesCS3D01G529800 chr4D 93.204 103 1 5 2892 2991 401529021 401528922 2.440000e-31 147.0
49 TraesCS3D01G529800 chr7A 88.889 81 9 0 12 92 729642855 729642775 1.930000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G529800 chr3D 606929041 606932081 3040 False 1931.866667 5616 98.692667 1 3041 3 chr3D.!!$F1 3040
1 TraesCS3D01G529800 chr3D 607308365 607314012 5647 True 784.500000 2606 90.964250 12 2983 4 chr3D.!!$R1 2971
2 TraesCS3D01G529800 chr3B 816264216 816266079 1863 False 910.333333 2148 91.316667 615 2623 3 chr3B.!!$F2 2008
3 TraesCS3D01G529800 chr3B 816690083 816692410 2327 True 700.000000 1956 91.105500 683 2999 4 chr3B.!!$R1 2316
4 TraesCS3D01G529800 chr3A 739732928 739737934 5006 True 461.333333 1917 88.642000 12 3039 6 chr3A.!!$R2 3027
5 TraesCS3D01G529800 chr3A 739321857 739326219 4362 False 406.500000 1190 89.016375 47 3041 8 chr3A.!!$F2 2994
6 TraesCS3D01G529800 chr1A 406189062 406190852 1790 False 736.500000 1194 82.056000 332 2064 2 chr1A.!!$F1 1732
7 TraesCS3D01G529800 chr1B 327023261 327025022 1761 True 743.000000 1181 82.756000 335 2064 2 chr1B.!!$R1 1729
8 TraesCS3D01G529800 chr1B 435194091 435195796 1705 False 586.000000 830 83.689500 694 2064 2 chr1B.!!$F1 1370
9 TraesCS3D01G529800 chr1D 227129230 227131311 2081 True 509.666667 870 83.591333 335 2064 3 chr1D.!!$R2 1729

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
208 421 0.02811 GGATTTCGAGATGCGTTGGC 59.972 55.0 0.0 0.0 41.8 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2185 7160 0.031178 CTGAACAAAGCACCAGCACC 59.969 55.0 0.0 0.0 45.49 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.343758 CCGCCCCCACGATATCAG 59.656 66.667 3.12 0.00 34.06 2.90
26 27 3.138625 CCCCCACGATATCAGCGT 58.861 61.111 3.12 0.00 43.67 5.07
28 29 1.371758 CCCCACGATATCAGCGTCG 60.372 63.158 3.12 0.00 40.44 5.12
35 36 0.110147 GATATCAGCGTCGTCCCGAG 60.110 60.000 0.00 0.00 36.23 4.63
142 192 1.307691 AGCTCAGCCAGATCCCCTT 60.308 57.895 0.00 0.00 0.00 3.95
189 402 1.612469 CGAGCTGTTCTGCTGTGTCG 61.612 60.000 8.78 3.46 44.17 4.35
195 408 2.143122 TGTTCTGCTGTGTCGGATTTC 58.857 47.619 0.00 0.00 0.00 2.17
206 419 1.277326 TCGGATTTCGAGATGCGTTG 58.723 50.000 24.98 2.64 43.74 4.10
208 421 0.028110 GGATTTCGAGATGCGTTGGC 59.972 55.000 0.00 0.00 41.80 4.52
210 423 1.398390 GATTTCGAGATGCGTTGGCTT 59.602 47.619 0.00 0.00 41.80 4.35
211 424 2.087501 TTTCGAGATGCGTTGGCTTA 57.912 45.000 0.00 0.00 41.80 3.09
212 425 2.309528 TTCGAGATGCGTTGGCTTAT 57.690 45.000 0.00 0.00 41.80 1.73
213 426 1.852942 TCGAGATGCGTTGGCTTATC 58.147 50.000 0.00 0.00 41.80 1.75
214 427 1.136110 TCGAGATGCGTTGGCTTATCA 59.864 47.619 0.00 0.00 41.80 2.15
216 429 2.555199 GAGATGCGTTGGCTTATCACT 58.445 47.619 0.00 0.00 40.82 3.41
217 430 2.283298 AGATGCGTTGGCTTATCACTG 58.717 47.619 0.00 0.00 40.82 3.66
218 431 2.093500 AGATGCGTTGGCTTATCACTGA 60.093 45.455 0.00 0.00 40.82 3.41
219 432 1.725641 TGCGTTGGCTTATCACTGAG 58.274 50.000 0.00 0.00 40.82 3.35
221 434 2.009042 GCGTTGGCTTATCACTGAGCT 61.009 52.381 0.00 0.00 38.89 4.09
222 435 1.662629 CGTTGGCTTATCACTGAGCTG 59.337 52.381 0.00 0.00 38.89 4.24
248 498 5.107109 TGTGCTGTGCTGTGTAAATTTAG 57.893 39.130 0.00 0.00 0.00 1.85
253 503 5.713025 CTGTGCTGTGTAAATTTAGCCATT 58.287 37.500 7.94 0.00 35.36 3.16
256 506 5.345741 GTGCTGTGTAAATTTAGCCATTGTG 59.654 40.000 7.94 0.00 35.36 3.33
258 508 4.815269 TGTGTAAATTTAGCCATTGTGCC 58.185 39.130 0.00 0.00 0.00 5.01
264 514 1.904287 TTAGCCATTGTGCCGTCTTT 58.096 45.000 0.00 0.00 0.00 2.52
276 526 1.284982 CCGTCTTTCACCGAGCTGTG 61.285 60.000 0.00 0.00 37.59 3.66
286 536 0.169672 CCGAGCTGTGCAGAATTTGG 59.830 55.000 3.02 0.00 0.00 3.28
288 538 2.076100 CGAGCTGTGCAGAATTTGGTA 58.924 47.619 3.02 0.00 0.00 3.25
291 541 2.165030 AGCTGTGCAGAATTTGGTATGC 59.835 45.455 3.02 0.00 39.14 3.14
296 546 1.683385 GCAGAATTTGGTATGCCCCTC 59.317 52.381 0.00 0.00 32.49 4.30
302 552 0.325296 TTGGTATGCCCCTCTCGAGT 60.325 55.000 13.13 0.00 0.00 4.18
309 559 1.817209 CCCCTCTCGAGTTGGCTAC 59.183 63.158 13.13 0.00 0.00 3.58
319 569 1.936547 GAGTTGGCTACTGTGCTATGC 59.063 52.381 6.27 0.00 37.17 3.14
320 570 1.017387 GTTGGCTACTGTGCTATGCC 58.983 55.000 0.00 0.00 43.49 4.40
321 571 0.461870 TTGGCTACTGTGCTATGCCG 60.462 55.000 0.00 0.00 45.90 5.69
354 612 5.221126 GCTGATTGCTTACCTCAAAATAGGG 60.221 44.000 0.00 0.00 38.70 3.53
420 684 3.897239 TCTGTGGTTGAACAGTGGAAAT 58.103 40.909 0.00 0.00 46.33 2.17
424 688 4.950475 TGTGGTTGAACAGTGGAAATAACA 59.050 37.500 0.00 0.00 0.00 2.41
428 692 7.332182 GTGGTTGAACAGTGGAAATAACAAAAA 59.668 33.333 0.00 0.00 0.00 1.94
483 751 7.399191 TCAGGGACATTGTAGACTTTACACTAT 59.601 37.037 0.00 0.00 0.00 2.12
498 766 8.784043 ACTTTACACTATTTAGCACAGAAAAGG 58.216 33.333 0.00 0.00 0.00 3.11
520 788 1.834188 CCCCAAATTCAGTAAGCCGT 58.166 50.000 0.00 0.00 0.00 5.68
535 803 8.879759 TCAGTAAGCCGTAAAGAATATGAAAAG 58.120 33.333 0.00 0.00 0.00 2.27
557 826 1.535444 TTCCTCGGAGCTTCCCACA 60.535 57.895 0.00 0.00 31.13 4.17
564 834 1.743772 CGGAGCTTCCCACATTGTAGG 60.744 57.143 0.00 0.00 31.13 3.18
565 835 1.559682 GGAGCTTCCCACATTGTAGGA 59.440 52.381 0.00 0.00 0.00 2.94
566 836 2.420687 GGAGCTTCCCACATTGTAGGAG 60.421 54.545 4.14 1.32 0.00 3.69
567 837 1.065126 AGCTTCCCACATTGTAGGAGC 60.065 52.381 13.63 13.63 0.00 4.70
568 838 1.065126 GCTTCCCACATTGTAGGAGCT 60.065 52.381 13.97 0.00 0.00 4.09
569 839 2.619074 GCTTCCCACATTGTAGGAGCTT 60.619 50.000 13.97 0.00 0.00 3.74
570 840 3.370527 GCTTCCCACATTGTAGGAGCTTA 60.371 47.826 13.97 0.00 0.00 3.09
576 846 8.270137 TCCCACATTGTAGGAGCTTATATTTA 57.730 34.615 0.00 0.00 0.00 1.40
611 881 2.191400 AGCCTGTTTCTGGAGATGCTA 58.809 47.619 0.00 0.00 0.00 3.49
632 902 7.810658 TGCTAAAGCTCAAAAGAAGTAATCAG 58.189 34.615 3.26 0.00 42.66 2.90
669 939 4.278419 AGTTGTTTTGCAGTGGAGGTTATC 59.722 41.667 0.00 0.00 0.00 1.75
704 1018 7.561237 TTCTTGCGCAGAAATGTTAAAATAC 57.439 32.000 11.31 0.00 38.68 1.89
763 1079 7.448161 TGTCACCATTCACAGTTAGAAATTGAT 59.552 33.333 0.00 0.00 0.00 2.57
766 1082 7.904977 CACCATTCACAGTTAGAAATTGATACG 59.095 37.037 0.00 0.00 0.00 3.06
857 3700 9.936759 TTGGAAAAATTATAACATCAGGAAACC 57.063 29.630 0.00 0.00 0.00 3.27
917 3767 3.320673 TTCACCAAACAAACCAACCAC 57.679 42.857 0.00 0.00 0.00 4.16
919 3769 2.900546 TCACCAAACAAACCAACCACTT 59.099 40.909 0.00 0.00 0.00 3.16
920 3770 2.999355 CACCAAACAAACCAACCACTTG 59.001 45.455 0.00 0.00 0.00 3.16
921 3771 2.006169 CCAAACAAACCAACCACTTGC 58.994 47.619 0.00 0.00 0.00 4.01
922 3772 1.658095 CAAACAAACCAACCACTTGCG 59.342 47.619 0.00 0.00 0.00 4.85
923 3773 0.892063 AACAAACCAACCACTTGCGT 59.108 45.000 0.00 0.00 0.00 5.24
944 3810 5.462405 CGTGGTTTTAAAATCATTTCCGGA 58.538 37.500 16.58 0.00 30.69 5.14
981 3850 5.871396 TCTCTTGTCTAACACTCTGGTTT 57.129 39.130 0.00 0.00 32.29 3.27
1045 3914 2.365617 CGCCAGTACTATGAGGAACCAT 59.634 50.000 0.00 0.00 0.00 3.55
1080 3949 3.787001 CCCCCTCCTCGACTTGCC 61.787 72.222 0.00 0.00 0.00 4.52
1083 3952 4.148825 CCTCCTCGACTTGCCCGG 62.149 72.222 0.00 0.00 0.00 5.73
1169 4038 3.691118 AGAATCCATGATGACAACCAACG 59.309 43.478 0.00 0.00 0.00 4.10
1555 4428 3.466836 CTGGTCTGTGTTTCTGCTACAA 58.533 45.455 0.00 0.00 0.00 2.41
1602 4510 1.106285 GTGGCCCACATGAGGAAATC 58.894 55.000 9.55 0.00 34.08 2.17
1609 4583 5.070847 GGCCCACATGAGGAAATCATTTTAT 59.929 40.000 11.19 0.00 46.97 1.40
1626 4600 9.675464 ATCATTTTATTGTTTCAATGCATTCCT 57.325 25.926 9.53 0.00 0.00 3.36
2045 6952 2.472414 TACCCGCGCCCTTGATTTGT 62.472 55.000 0.00 0.00 0.00 2.83
2047 6954 2.179018 CGCGCCCTTGATTTGTGG 59.821 61.111 0.00 0.00 0.00 4.17
2157 7132 4.885907 CAGAAGATTGTAACCATGGATGCT 59.114 41.667 21.47 2.03 0.00 3.79
2158 7133 5.359009 CAGAAGATTGTAACCATGGATGCTT 59.641 40.000 21.47 11.06 0.00 3.91
2159 7134 5.359009 AGAAGATTGTAACCATGGATGCTTG 59.641 40.000 21.47 0.00 0.00 4.01
2160 7135 4.603131 AGATTGTAACCATGGATGCTTGT 58.397 39.130 21.47 0.31 0.00 3.16
2161 7136 5.754782 AGATTGTAACCATGGATGCTTGTA 58.245 37.500 21.47 0.00 0.00 2.41
2162 7137 5.590259 AGATTGTAACCATGGATGCTTGTAC 59.410 40.000 21.47 0.55 0.00 2.90
2163 7138 4.568072 TGTAACCATGGATGCTTGTACT 57.432 40.909 21.47 0.00 0.00 2.73
2164 7139 4.260985 TGTAACCATGGATGCTTGTACTG 58.739 43.478 21.47 0.00 0.00 2.74
2165 7140 3.719268 AACCATGGATGCTTGTACTGA 57.281 42.857 21.47 0.00 0.00 3.41
2166 7141 3.939740 ACCATGGATGCTTGTACTGAT 57.060 42.857 21.47 0.00 0.00 2.90
2167 7142 3.548770 ACCATGGATGCTTGTACTGATG 58.451 45.455 21.47 0.00 0.00 3.07
2168 7143 2.292569 CCATGGATGCTTGTACTGATGC 59.707 50.000 5.56 0.00 0.00 3.91
2169 7144 3.211865 CATGGATGCTTGTACTGATGCT 58.788 45.455 0.00 0.00 0.00 3.79
2170 7145 3.354948 TGGATGCTTGTACTGATGCTT 57.645 42.857 0.00 0.00 0.00 3.91
2171 7146 3.689347 TGGATGCTTGTACTGATGCTTT 58.311 40.909 0.00 0.00 0.00 3.51
2172 7147 4.081406 TGGATGCTTGTACTGATGCTTTT 58.919 39.130 0.00 0.00 0.00 2.27
2173 7148 4.523943 TGGATGCTTGTACTGATGCTTTTT 59.476 37.500 0.00 0.00 0.00 1.94
2174 7149 5.098211 GGATGCTTGTACTGATGCTTTTTC 58.902 41.667 0.00 0.00 0.00 2.29
2175 7150 5.105997 GGATGCTTGTACTGATGCTTTTTCT 60.106 40.000 0.00 0.00 0.00 2.52
2176 7151 5.112220 TGCTTGTACTGATGCTTTTTCTG 57.888 39.130 0.00 0.00 0.00 3.02
2177 7152 4.821260 TGCTTGTACTGATGCTTTTTCTGA 59.179 37.500 0.00 0.00 0.00 3.27
2178 7153 5.474532 TGCTTGTACTGATGCTTTTTCTGAT 59.525 36.000 0.00 0.00 0.00 2.90
2179 7154 5.798934 GCTTGTACTGATGCTTTTTCTGATG 59.201 40.000 0.00 0.00 0.00 3.07
2180 7155 5.300969 TGTACTGATGCTTTTTCTGATGC 57.699 39.130 0.00 0.00 0.00 3.91
2181 7156 5.005740 TGTACTGATGCTTTTTCTGATGCT 58.994 37.500 0.00 0.00 0.00 3.79
2182 7157 5.474532 TGTACTGATGCTTTTTCTGATGCTT 59.525 36.000 0.00 0.00 0.00 3.91
2183 7158 4.806330 ACTGATGCTTTTTCTGATGCTTG 58.194 39.130 0.00 0.00 0.00 4.01
2184 7159 4.280174 ACTGATGCTTTTTCTGATGCTTGT 59.720 37.500 0.00 0.00 0.00 3.16
2185 7160 4.552355 TGATGCTTTTTCTGATGCTTGTG 58.448 39.130 0.00 0.00 0.00 3.33
2186 7161 3.374220 TGCTTTTTCTGATGCTTGTGG 57.626 42.857 0.00 0.00 0.00 4.17
2187 7162 2.694628 TGCTTTTTCTGATGCTTGTGGT 59.305 40.909 0.00 0.00 0.00 4.16
2188 7163 3.054878 GCTTTTTCTGATGCTTGTGGTG 58.945 45.455 0.00 0.00 0.00 4.17
2189 7164 2.798976 TTTTCTGATGCTTGTGGTGC 57.201 45.000 0.00 0.00 0.00 5.01
2190 7165 1.985473 TTTCTGATGCTTGTGGTGCT 58.015 45.000 0.00 0.00 0.00 4.40
2191 7166 1.241165 TTCTGATGCTTGTGGTGCTG 58.759 50.000 0.00 0.00 0.00 4.41
2192 7167 0.607217 TCTGATGCTTGTGGTGCTGG 60.607 55.000 0.00 0.00 0.00 4.85
2193 7168 0.892358 CTGATGCTTGTGGTGCTGGT 60.892 55.000 0.00 0.00 0.00 4.00
2194 7169 1.174078 TGATGCTTGTGGTGCTGGTG 61.174 55.000 0.00 0.00 0.00 4.17
2195 7170 2.482296 GATGCTTGTGGTGCTGGTGC 62.482 60.000 0.00 0.00 40.20 5.01
2196 7171 2.908940 GCTTGTGGTGCTGGTGCT 60.909 61.111 0.00 0.00 40.48 4.40
2197 7172 2.492773 GCTTGTGGTGCTGGTGCTT 61.493 57.895 0.00 0.00 40.48 3.91
2198 7173 2.019897 GCTTGTGGTGCTGGTGCTTT 62.020 55.000 0.00 0.00 40.48 3.51
2199 7174 0.249155 CTTGTGGTGCTGGTGCTTTG 60.249 55.000 0.00 0.00 40.48 2.77
2200 7175 0.969917 TTGTGGTGCTGGTGCTTTGT 60.970 50.000 0.00 0.00 40.48 2.83
2201 7176 0.969917 TGTGGTGCTGGTGCTTTGTT 60.970 50.000 0.00 0.00 40.48 2.83
2202 7177 0.249031 GTGGTGCTGGTGCTTTGTTC 60.249 55.000 0.00 0.00 40.48 3.18
2203 7178 0.682532 TGGTGCTGGTGCTTTGTTCA 60.683 50.000 0.00 0.00 40.48 3.18
2204 7179 0.031178 GGTGCTGGTGCTTTGTTCAG 59.969 55.000 0.00 0.00 40.48 3.02
2205 7180 1.024271 GTGCTGGTGCTTTGTTCAGA 58.976 50.000 0.00 0.00 40.48 3.27
2206 7181 1.405105 GTGCTGGTGCTTTGTTCAGAA 59.595 47.619 0.00 0.00 40.48 3.02
2207 7182 1.677576 TGCTGGTGCTTTGTTCAGAAG 59.322 47.619 0.00 0.00 40.48 2.85
2208 7183 1.949525 GCTGGTGCTTTGTTCAGAAGA 59.050 47.619 0.00 0.00 36.03 2.87
2209 7184 2.555757 GCTGGTGCTTTGTTCAGAAGAT 59.444 45.455 0.00 0.00 36.03 2.40
2210 7185 3.005155 GCTGGTGCTTTGTTCAGAAGATT 59.995 43.478 0.00 0.00 36.03 2.40
2211 7186 4.543692 CTGGTGCTTTGTTCAGAAGATTG 58.456 43.478 0.00 0.00 0.00 2.67
2212 7187 3.953612 TGGTGCTTTGTTCAGAAGATTGT 59.046 39.130 0.00 0.00 0.00 2.71
2213 7188 5.129634 TGGTGCTTTGTTCAGAAGATTGTA 58.870 37.500 0.00 0.00 0.00 2.41
2214 7189 5.592282 TGGTGCTTTGTTCAGAAGATTGTAA 59.408 36.000 0.00 0.00 0.00 2.41
2215 7190 5.915196 GGTGCTTTGTTCAGAAGATTGTAAC 59.085 40.000 0.00 0.00 0.00 2.50
2216 7191 5.915196 GTGCTTTGTTCAGAAGATTGTAACC 59.085 40.000 0.00 0.00 0.00 2.85
2217 7192 5.592282 TGCTTTGTTCAGAAGATTGTAACCA 59.408 36.000 0.00 0.00 0.00 3.67
2218 7193 6.265196 TGCTTTGTTCAGAAGATTGTAACCAT 59.735 34.615 0.00 0.00 0.00 3.55
2219 7194 6.583806 GCTTTGTTCAGAAGATTGTAACCATG 59.416 38.462 0.00 0.00 0.00 3.66
2220 7195 6.573664 TTGTTCAGAAGATTGTAACCATGG 57.426 37.500 11.19 11.19 0.00 3.66
2221 7196 5.875224 TGTTCAGAAGATTGTAACCATGGA 58.125 37.500 21.47 0.00 0.00 3.41
2222 7197 6.484288 TGTTCAGAAGATTGTAACCATGGAT 58.516 36.000 21.47 9.83 0.00 3.41
2223 7198 6.375174 TGTTCAGAAGATTGTAACCATGGATG 59.625 38.462 21.47 0.00 0.00 3.51
2224 7199 4.883585 TCAGAAGATTGTAACCATGGATGC 59.116 41.667 21.47 11.51 0.00 3.91
2322 7350 5.015515 TGATTGGTGAACATTATTGCCTGA 58.984 37.500 0.00 0.00 0.00 3.86
2407 7452 6.515272 AGGATAACAGCAACCTAAATGTTG 57.485 37.500 0.00 0.00 46.59 3.33
2421 7466 5.065859 CCTAAATGTTGTGCATTCACCGATA 59.934 40.000 0.00 0.00 46.29 2.92
2443 7489 5.717038 ATCGCCTTGTTTTTGTTTTCTTG 57.283 34.783 0.00 0.00 0.00 3.02
2447 7493 7.206687 TCGCCTTGTTTTTGTTTTCTTGATAT 58.793 30.769 0.00 0.00 0.00 1.63
2560 7611 1.024271 TCAGGTGTTGAAGCACAAGC 58.976 50.000 0.00 0.00 40.89 4.01
2583 7634 2.683152 GCTCTGGATGCCTCAGAATTGT 60.683 50.000 0.00 0.00 40.29 2.71
2588 7639 2.089980 GATGCCTCAGAATTGTGTGCT 58.910 47.619 16.36 6.52 0.00 4.40
2594 7645 5.059161 GCCTCAGAATTGTGTGCTATATGA 58.941 41.667 2.11 0.00 0.00 2.15
2600 7651 7.439356 TCAGAATTGTGTGCTATATGAAGTAGC 59.561 37.037 2.11 0.00 43.73 3.58
2900 8138 9.547753 ACAGTATAATAGCTAACTTGTCCAATG 57.452 33.333 0.00 0.00 0.00 2.82
2907 8145 4.099266 AGCTAACTTGTCCAATGCAAACAA 59.901 37.500 0.00 0.00 0.00 2.83
3007 8250 4.891992 TTTTTCCCTTTTTCACCACACA 57.108 36.364 0.00 0.00 0.00 3.72
3008 8251 4.891992 TTTTCCCTTTTTCACCACACAA 57.108 36.364 0.00 0.00 0.00 3.33
3009 8252 4.464069 TTTCCCTTTTTCACCACACAAG 57.536 40.909 0.00 0.00 0.00 3.16
3010 8253 3.374042 TCCCTTTTTCACCACACAAGA 57.626 42.857 0.00 0.00 0.00 3.02
3011 8254 3.909732 TCCCTTTTTCACCACACAAGAT 58.090 40.909 0.00 0.00 0.00 2.40
3012 8255 3.636300 TCCCTTTTTCACCACACAAGATG 59.364 43.478 0.00 0.00 0.00 2.90
3039 8282 9.454585 GTTGCTTACGAAGGTTTTAACTAAAAT 57.545 29.630 0.00 0.00 37.48 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 2.343758 CTGATATCGTGGGGGCGG 59.656 66.667 0.00 0.00 0.00 6.13
7 8 2.357517 GCTGATATCGTGGGGGCG 60.358 66.667 0.00 0.00 0.00 6.13
8 9 2.357517 CGCTGATATCGTGGGGGC 60.358 66.667 0.00 0.00 0.00 5.80
9 10 1.006102 GACGCTGATATCGTGGGGG 60.006 63.158 14.04 8.21 40.59 5.40
10 11 1.371758 CGACGCTGATATCGTGGGG 60.372 63.158 14.04 10.08 40.59 4.96
189 402 0.028110 GCCAACGCATCTCGAAATCC 59.972 55.000 0.00 0.00 41.67 3.01
195 408 1.258982 GTGATAAGCCAACGCATCTCG 59.741 52.381 0.00 0.00 45.38 4.04
203 416 1.399791 GCAGCTCAGTGATAAGCCAAC 59.600 52.381 0.00 0.00 0.00 3.77
204 417 1.742761 GCAGCTCAGTGATAAGCCAA 58.257 50.000 0.00 0.00 0.00 4.52
206 419 2.305405 CGCAGCTCAGTGATAAGCC 58.695 57.895 0.00 0.00 0.00 4.35
222 435 4.678269 CACAGCACAGCACAGCGC 62.678 66.667 0.00 0.00 42.91 5.92
248 498 0.387239 GTGAAAGACGGCACAATGGC 60.387 55.000 0.00 0.00 39.85 4.40
253 503 1.300620 CTCGGTGAAAGACGGCACA 60.301 57.895 0.00 0.00 36.76 4.57
256 506 2.048127 AGCTCGGTGAAAGACGGC 60.048 61.111 0.00 0.00 0.00 5.68
258 508 1.891060 GCACAGCTCGGTGAAAGACG 61.891 60.000 8.31 0.00 41.32 4.18
264 514 0.035317 AATTCTGCACAGCTCGGTGA 59.965 50.000 8.31 0.00 41.32 4.02
276 526 1.683385 GAGGGGCATACCAAATTCTGC 59.317 52.381 0.00 0.00 42.91 4.26
286 536 0.105039 CCAACTCGAGAGGGGCATAC 59.895 60.000 21.68 0.00 34.16 2.39
288 538 3.036429 GCCAACTCGAGAGGGGCAT 62.036 63.158 28.74 3.20 46.03 4.40
291 541 0.684805 AGTAGCCAACTCGAGAGGGG 60.685 60.000 21.68 17.29 30.33 4.79
296 546 0.244994 AGCACAGTAGCCAACTCGAG 59.755 55.000 11.84 11.84 35.76 4.04
302 552 0.461870 CGGCATAGCACAGTAGCCAA 60.462 55.000 0.00 0.00 45.47 4.52
309 559 3.403277 GCAGTCGGCATAGCACAG 58.597 61.111 0.00 0.00 43.97 3.66
319 569 2.169789 CAATCAGCTCGGCAGTCGG 61.170 63.158 0.00 0.00 39.77 4.79
320 570 2.806856 GCAATCAGCTCGGCAGTCG 61.807 63.158 0.00 0.00 41.15 4.18
321 571 3.096791 GCAATCAGCTCGGCAGTC 58.903 61.111 0.00 0.00 41.15 3.51
390 654 2.163818 TCAACCACAGAAGTAAGCGG 57.836 50.000 0.00 0.00 0.00 5.52
391 655 2.869801 TGTTCAACCACAGAAGTAAGCG 59.130 45.455 0.00 0.00 0.00 4.68
392 656 3.877508 ACTGTTCAACCACAGAAGTAAGC 59.122 43.478 7.82 0.00 46.29 3.09
429 693 8.981659 CCTTAATCCCATCCTTTTGTTAGAAAT 58.018 33.333 0.00 0.00 0.00 2.17
430 694 7.953493 ACCTTAATCCCATCCTTTTGTTAGAAA 59.047 33.333 0.00 0.00 0.00 2.52
431 695 7.475299 ACCTTAATCCCATCCTTTTGTTAGAA 58.525 34.615 0.00 0.00 0.00 2.10
447 711 4.600062 ACAATGTCCCTGAACCTTAATCC 58.400 43.478 0.00 0.00 0.00 3.01
454 718 3.983044 AGTCTACAATGTCCCTGAACC 57.017 47.619 0.00 0.00 0.00 3.62
483 751 2.514803 GGGCTCCTTTTCTGTGCTAAA 58.485 47.619 0.00 0.00 0.00 1.85
498 766 1.751351 GGCTTACTGAATTTGGGGCTC 59.249 52.381 0.00 0.00 0.00 4.70
520 788 7.065803 CCGAGGAACTGCTTTTCATATTCTTTA 59.934 37.037 0.00 0.00 41.55 1.85
535 803 1.448717 GGAAGCTCCGAGGAACTGC 60.449 63.158 0.00 0.00 41.55 4.40
557 826 8.210946 TGCAGTGTAAATATAAGCTCCTACAAT 58.789 33.333 0.00 0.00 0.00 2.71
564 834 7.496529 TGGATTGCAGTGTAAATATAAGCTC 57.503 36.000 0.00 0.00 0.00 4.09
565 835 9.573166 TTATGGATTGCAGTGTAAATATAAGCT 57.427 29.630 0.00 0.00 0.00 3.74
566 836 9.831737 CTTATGGATTGCAGTGTAAATATAAGC 57.168 33.333 15.33 0.00 0.00 3.09
567 837 9.831737 GCTTATGGATTGCAGTGTAAATATAAG 57.168 33.333 19.27 19.27 0.00 1.73
568 838 8.792633 GGCTTATGGATTGCAGTGTAAATATAA 58.207 33.333 0.00 3.46 0.00 0.98
569 839 8.163408 AGGCTTATGGATTGCAGTGTAAATATA 58.837 33.333 0.00 0.00 0.00 0.86
570 840 7.006509 AGGCTTATGGATTGCAGTGTAAATAT 58.993 34.615 0.00 0.00 0.00 1.28
576 846 2.291153 ACAGGCTTATGGATTGCAGTGT 60.291 45.455 0.00 0.00 0.00 3.55
611 881 7.807977 TCACTGATTACTTCTTTTGAGCTTT 57.192 32.000 0.00 0.00 0.00 3.51
632 902 5.052370 GCAAAACAACTTCGAAAGACATCAC 60.052 40.000 0.00 0.00 41.84 3.06
669 939 5.046910 TCTGCGCAAGAATTTAAGGAAAG 57.953 39.130 13.05 0.00 43.02 2.62
718 1032 6.974622 GGTGACAATTTGGCAGTAAGATTATG 59.025 38.462 4.84 0.00 35.04 1.90
720 1034 6.007076 TGGTGACAATTTGGCAGTAAGATTA 58.993 36.000 4.84 0.00 35.04 1.75
763 1079 0.826256 ACACAGAGTCAGTGCCCGTA 60.826 55.000 14.99 0.00 40.59 4.02
766 1082 0.601311 GACACACAGAGTCAGTGCCC 60.601 60.000 14.99 1.88 40.59 5.36
882 3725 3.340034 TGGTGAAACATGACGTATTCCC 58.660 45.455 0.00 1.38 39.98 3.97
919 3769 4.681942 CGGAAATGATTTTAAAACCACGCA 59.318 37.500 1.97 0.00 0.00 5.24
920 3770 4.090786 CCGGAAATGATTTTAAAACCACGC 59.909 41.667 1.97 0.00 0.00 5.34
921 3771 5.462405 TCCGGAAATGATTTTAAAACCACG 58.538 37.500 0.00 0.00 0.00 4.94
922 3772 5.347635 GCTCCGGAAATGATTTTAAAACCAC 59.652 40.000 5.23 0.00 0.00 4.16
923 3773 5.245075 AGCTCCGGAAATGATTTTAAAACCA 59.755 36.000 5.23 0.00 0.00 3.67
925 3791 6.866248 TCAAGCTCCGGAAATGATTTTAAAAC 59.134 34.615 5.23 0.00 0.00 2.43
929 3795 4.096382 GCTCAAGCTCCGGAAATGATTTTA 59.904 41.667 5.23 0.00 38.21 1.52
981 3850 6.191315 TGCCATTTATAGCCCTGTAAAGAAA 58.809 36.000 4.09 0.00 31.41 2.52
1045 3914 1.077068 GGCCATCACGAAATCCCCA 60.077 57.895 0.00 0.00 0.00 4.96
1080 3949 1.413077 GGTGAGATAGACCTTTCCCGG 59.587 57.143 0.00 0.00 0.00 5.73
1083 3952 2.758979 TCGTGGTGAGATAGACCTTTCC 59.241 50.000 0.00 0.00 34.26 3.13
1169 4038 2.415893 CCAACAATTTCATCCGCCAGAC 60.416 50.000 0.00 0.00 0.00 3.51
1323 4192 0.828677 TAAGGGGTTCTAAGGAGCGC 59.171 55.000 0.00 0.00 35.52 5.92
1602 4510 8.392612 GGAGGAATGCATTGAAACAATAAAATG 58.607 33.333 18.59 0.00 33.98 2.32
1609 4583 3.509442 AGGGAGGAATGCATTGAAACAA 58.491 40.909 18.59 0.00 0.00 2.83
2003 6910 3.739613 GGGGGTCCCATGGTCCAC 61.740 72.222 20.21 17.67 44.65 4.02
2045 6952 3.563808 CCGACTGACAAGAATCAAAACCA 59.436 43.478 0.00 0.00 0.00 3.67
2047 6954 3.555518 GCCGACTGACAAGAATCAAAAC 58.444 45.455 0.00 0.00 0.00 2.43
2157 7132 5.474532 AGCATCAGAAAAAGCATCAGTACAA 59.525 36.000 0.00 0.00 0.00 2.41
2158 7133 5.005740 AGCATCAGAAAAAGCATCAGTACA 58.994 37.500 0.00 0.00 0.00 2.90
2159 7134 5.557891 AGCATCAGAAAAAGCATCAGTAC 57.442 39.130 0.00 0.00 0.00 2.73
2160 7135 5.474532 ACAAGCATCAGAAAAAGCATCAGTA 59.525 36.000 0.00 0.00 0.00 2.74
2161 7136 4.280174 ACAAGCATCAGAAAAAGCATCAGT 59.720 37.500 0.00 0.00 0.00 3.41
2162 7137 4.621460 CACAAGCATCAGAAAAAGCATCAG 59.379 41.667 0.00 0.00 0.00 2.90
2163 7138 4.552355 CACAAGCATCAGAAAAAGCATCA 58.448 39.130 0.00 0.00 0.00 3.07
2164 7139 3.924686 CCACAAGCATCAGAAAAAGCATC 59.075 43.478 0.00 0.00 0.00 3.91
2165 7140 3.322828 ACCACAAGCATCAGAAAAAGCAT 59.677 39.130 0.00 0.00 0.00 3.79
2166 7141 2.694628 ACCACAAGCATCAGAAAAAGCA 59.305 40.909 0.00 0.00 0.00 3.91
2167 7142 3.054878 CACCACAAGCATCAGAAAAAGC 58.945 45.455 0.00 0.00 0.00 3.51
2168 7143 3.054878 GCACCACAAGCATCAGAAAAAG 58.945 45.455 0.00 0.00 0.00 2.27
2169 7144 2.694628 AGCACCACAAGCATCAGAAAAA 59.305 40.909 0.00 0.00 0.00 1.94
2170 7145 2.034939 CAGCACCACAAGCATCAGAAAA 59.965 45.455 0.00 0.00 0.00 2.29
2171 7146 1.610038 CAGCACCACAAGCATCAGAAA 59.390 47.619 0.00 0.00 0.00 2.52
2172 7147 1.241165 CAGCACCACAAGCATCAGAA 58.759 50.000 0.00 0.00 0.00 3.02
2173 7148 0.607217 CCAGCACCACAAGCATCAGA 60.607 55.000 0.00 0.00 0.00 3.27
2174 7149 0.892358 ACCAGCACCACAAGCATCAG 60.892 55.000 0.00 0.00 0.00 2.90
2175 7150 1.151221 ACCAGCACCACAAGCATCA 59.849 52.632 0.00 0.00 0.00 3.07
2176 7151 1.582968 CACCAGCACCACAAGCATC 59.417 57.895 0.00 0.00 0.00 3.91
2177 7152 2.567497 GCACCAGCACCACAAGCAT 61.567 57.895 0.00 0.00 41.58 3.79
2178 7153 3.218470 GCACCAGCACCACAAGCA 61.218 61.111 0.00 0.00 41.58 3.91
2179 7154 2.019897 AAAGCACCAGCACCACAAGC 62.020 55.000 0.00 0.00 45.49 4.01
2180 7155 0.249155 CAAAGCACCAGCACCACAAG 60.249 55.000 0.00 0.00 45.49 3.16
2181 7156 0.969917 ACAAAGCACCAGCACCACAA 60.970 50.000 0.00 0.00 45.49 3.33
2182 7157 0.969917 AACAAAGCACCAGCACCACA 60.970 50.000 0.00 0.00 45.49 4.17
2183 7158 0.249031 GAACAAAGCACCAGCACCAC 60.249 55.000 0.00 0.00 45.49 4.16
2184 7159 0.682532 TGAACAAAGCACCAGCACCA 60.683 50.000 0.00 0.00 45.49 4.17
2185 7160 0.031178 CTGAACAAAGCACCAGCACC 59.969 55.000 0.00 0.00 45.49 5.01
2186 7161 1.024271 TCTGAACAAAGCACCAGCAC 58.976 50.000 0.00 0.00 45.49 4.40
2187 7162 1.677576 CTTCTGAACAAAGCACCAGCA 59.322 47.619 0.00 0.00 45.49 4.41
2188 7163 1.949525 TCTTCTGAACAAAGCACCAGC 59.050 47.619 0.00 0.00 42.56 4.85
2189 7164 4.037208 ACAATCTTCTGAACAAAGCACCAG 59.963 41.667 0.00 0.00 0.00 4.00
2190 7165 3.953612 ACAATCTTCTGAACAAAGCACCA 59.046 39.130 0.00 0.00 0.00 4.17
2191 7166 4.574599 ACAATCTTCTGAACAAAGCACC 57.425 40.909 0.00 0.00 0.00 5.01
2192 7167 5.915196 GGTTACAATCTTCTGAACAAAGCAC 59.085 40.000 0.00 0.00 0.00 4.40
2193 7168 5.592282 TGGTTACAATCTTCTGAACAAAGCA 59.408 36.000 0.00 0.00 0.00 3.91
2194 7169 6.072112 TGGTTACAATCTTCTGAACAAAGC 57.928 37.500 0.00 0.00 0.00 3.51
2195 7170 7.040478 TCCATGGTTACAATCTTCTGAACAAAG 60.040 37.037 12.58 0.00 0.00 2.77
2196 7171 6.775142 TCCATGGTTACAATCTTCTGAACAAA 59.225 34.615 12.58 0.00 0.00 2.83
2197 7172 6.303054 TCCATGGTTACAATCTTCTGAACAA 58.697 36.000 12.58 0.00 0.00 2.83
2198 7173 5.875224 TCCATGGTTACAATCTTCTGAACA 58.125 37.500 12.58 0.00 0.00 3.18
2199 7174 6.678900 GCATCCATGGTTACAATCTTCTGAAC 60.679 42.308 12.58 0.00 0.00 3.18
2200 7175 5.357878 GCATCCATGGTTACAATCTTCTGAA 59.642 40.000 12.58 0.00 0.00 3.02
2201 7176 4.883585 GCATCCATGGTTACAATCTTCTGA 59.116 41.667 12.58 0.00 0.00 3.27
2202 7177 4.037208 GGCATCCATGGTTACAATCTTCTG 59.963 45.833 12.58 0.00 0.00 3.02
2203 7178 4.210331 GGCATCCATGGTTACAATCTTCT 58.790 43.478 12.58 0.00 0.00 2.85
2204 7179 3.319122 GGGCATCCATGGTTACAATCTTC 59.681 47.826 12.58 0.00 0.00 2.87
2205 7180 3.299503 GGGCATCCATGGTTACAATCTT 58.700 45.455 12.58 0.00 0.00 2.40
2206 7181 2.749466 CGGGCATCCATGGTTACAATCT 60.749 50.000 12.58 0.00 0.00 2.40
2207 7182 1.608590 CGGGCATCCATGGTTACAATC 59.391 52.381 12.58 0.00 0.00 2.67
2208 7183 1.064017 ACGGGCATCCATGGTTACAAT 60.064 47.619 12.58 0.00 0.00 2.71
2209 7184 0.329931 ACGGGCATCCATGGTTACAA 59.670 50.000 12.58 0.00 0.00 2.41
2210 7185 0.393673 CACGGGCATCCATGGTTACA 60.394 55.000 12.58 0.00 0.00 2.41
2211 7186 1.101049 CCACGGGCATCCATGGTTAC 61.101 60.000 12.58 0.00 29.77 2.50
2212 7187 1.225983 CCACGGGCATCCATGGTTA 59.774 57.895 12.58 0.00 29.77 2.85
2213 7188 2.044053 CCACGGGCATCCATGGTT 60.044 61.111 12.58 0.00 29.77 3.67
2214 7189 4.127744 CCCACGGGCATCCATGGT 62.128 66.667 12.58 0.00 31.66 3.55
2215 7190 4.127744 ACCCACGGGCATCCATGG 62.128 66.667 4.97 4.97 39.32 3.66
2216 7191 2.516930 GACCCACGGGCATCCATG 60.517 66.667 0.69 0.00 39.32 3.66
2217 7192 1.936767 AATGACCCACGGGCATCCAT 61.937 55.000 0.69 0.00 39.32 3.41
2218 7193 2.148723 AAATGACCCACGGGCATCCA 62.149 55.000 0.69 0.00 39.32 3.41
2219 7194 0.970427 AAAATGACCCACGGGCATCC 60.970 55.000 0.69 0.00 39.32 3.51
2220 7195 1.676006 CTAAAATGACCCACGGGCATC 59.324 52.381 0.69 0.00 39.32 3.91
2221 7196 1.684869 CCTAAAATGACCCACGGGCAT 60.685 52.381 0.69 4.17 39.32 4.40
2222 7197 0.322997 CCTAAAATGACCCACGGGCA 60.323 55.000 0.69 1.68 39.32 5.36
2223 7198 0.034863 TCCTAAAATGACCCACGGGC 60.035 55.000 0.69 0.00 39.32 6.13
2224 7199 2.365582 CTTCCTAAAATGACCCACGGG 58.634 52.381 0.00 0.00 42.03 5.28
2232 7207 9.023962 AGTACAATGAATTGCTTCCTAAAATGA 57.976 29.630 2.92 0.00 41.38 2.57
2322 7350 1.458639 GCAGCAGCCCTCACTTTTGT 61.459 55.000 0.00 0.00 33.58 2.83
2407 7452 0.512952 GGCGATATCGGTGAATGCAC 59.487 55.000 25.51 0.00 44.39 4.57
2421 7466 5.415221 TCAAGAAAACAAAAACAAGGCGAT 58.585 33.333 0.00 0.00 0.00 4.58
2447 7493 8.364142 ACCACAAAAATTCTCCATTCGAATTTA 58.636 29.630 8.21 0.00 45.36 1.40
2560 7611 0.540454 TTCTGAGGCATCCAGAGCAG 59.460 55.000 0.00 0.00 41.16 4.24
2583 7634 6.978674 AACCTAGCTACTTCATATAGCACA 57.021 37.500 6.77 0.00 46.27 4.57
2594 7645 8.769359 ACTATTGGATTACAAACCTAGCTACTT 58.231 33.333 0.00 0.00 43.46 2.24
2600 7651 7.336931 ACTTGCACTATTGGATTACAAACCTAG 59.663 37.037 0.00 0.00 43.46 3.02
2661 7724 2.622064 AAGTTTCACTTCAGCTCGGT 57.378 45.000 0.00 0.00 31.77 4.69
2662 7725 3.312421 TCAAAAGTTTCACTTCAGCTCGG 59.688 43.478 0.00 0.00 37.47 4.63
2899 8137 0.940519 GATGCGCTGCTTTGTTTGCA 60.941 50.000 9.73 0.00 38.81 4.08
2900 8138 0.665369 AGATGCGCTGCTTTGTTTGC 60.665 50.000 9.73 0.00 0.00 3.68
2907 8145 0.742281 CTACACCAGATGCGCTGCTT 60.742 55.000 9.73 0.00 43.50 3.91
2991 8234 3.243839 CCATCTTGTGTGGTGAAAAAGGG 60.244 47.826 0.00 0.00 31.96 3.95
3000 8243 6.785369 TCGTAAGCAACCATCTTGTGTGGT 62.785 45.833 0.00 0.00 44.99 4.16
3001 8244 2.095768 CGTAAGCAACCATCTTGTGTGG 60.096 50.000 0.00 0.00 42.55 4.17
3002 8245 2.805671 TCGTAAGCAACCATCTTGTGTG 59.194 45.455 0.00 0.00 37.18 3.82
3004 8247 3.120199 CCTTCGTAAGCAACCATCTTGTG 60.120 47.826 0.00 0.00 37.18 3.33
3005 8248 3.074412 CCTTCGTAAGCAACCATCTTGT 58.926 45.455 0.00 0.00 37.18 3.16
3006 8249 3.074412 ACCTTCGTAAGCAACCATCTTG 58.926 45.455 0.00 0.00 37.18 3.02
3007 8250 3.418684 ACCTTCGTAAGCAACCATCTT 57.581 42.857 0.00 0.00 37.18 2.40
3008 8251 3.418684 AACCTTCGTAAGCAACCATCT 57.581 42.857 0.00 0.00 37.18 2.90
3009 8252 4.499037 AAAACCTTCGTAAGCAACCATC 57.501 40.909 0.00 0.00 37.18 3.51
3010 8253 5.533528 AGTTAAAACCTTCGTAAGCAACCAT 59.466 36.000 0.00 0.00 37.18 3.55
3011 8254 4.883006 AGTTAAAACCTTCGTAAGCAACCA 59.117 37.500 0.00 0.00 37.18 3.67
3012 8255 5.428496 AGTTAAAACCTTCGTAAGCAACC 57.572 39.130 0.00 0.00 37.18 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.