Multiple sequence alignment - TraesCS3D01G529400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G529400 chr3D 100.000 6625 0 0 1 6625 606889237 606895861 0.000000e+00 12235.0
1 TraesCS3D01G529400 chr3D 88.217 314 23 9 1680 1983 606890607 606890916 4.880000e-96 363.0
2 TraesCS3D01G529400 chr3D 88.179 313 25 7 1371 1680 606890916 606891219 4.880000e-96 363.0
3 TraesCS3D01G529400 chr3D 85.161 155 21 2 6329 6481 606894874 606895028 2.470000e-34 158.0
4 TraesCS3D01G529400 chr3D 85.161 155 21 2 5638 5792 606895565 606895717 2.470000e-34 158.0
5 TraesCS3D01G529400 chr3A 92.543 4774 197 63 180 4906 739152129 739156790 0.000000e+00 6697.0
6 TraesCS3D01G529400 chr3A 89.937 1431 84 18 5201 6618 739156986 739158369 0.000000e+00 1790.0
7 TraesCS3D01G529400 chr3A 88.065 310 28 7 1680 1983 739153266 739153572 6.320000e-95 359.0
8 TraesCS3D01G529400 chr3A 85.714 315 27 11 1371 1680 739153572 739153873 3.860000e-82 316.0
9 TraesCS3D01G529400 chr3A 98.291 117 2 0 49 165 256934687 256934803 8.710000e-49 206.0
10 TraesCS3D01G529400 chr3A 83.796 216 17 5 4947 5162 739156789 739156986 8.770000e-44 189.0
11 TraesCS3D01G529400 chr3A 85.806 155 20 2 6329 6481 739157433 739157587 5.320000e-36 163.0
12 TraesCS3D01G529400 chrUn 96.318 3232 111 6 1680 4906 42599411 42602639 0.000000e+00 5302.0
13 TraesCS3D01G529400 chrUn 86.873 1554 99 50 177 1680 42598216 42599714 0.000000e+00 1642.0
14 TraesCS3D01G529400 chrUn 92.828 725 44 3 5890 6613 42603475 42604192 0.000000e+00 1044.0
15 TraesCS3D01G529400 chrUn 90.952 641 33 8 5201 5835 42602834 42603455 0.000000e+00 839.0
16 TraesCS3D01G529400 chrUn 82.870 216 19 8 4947 5162 42602638 42602835 1.900000e-40 178.0
17 TraesCS3D01G529400 chrUn 86.364 154 20 1 6329 6481 42603259 42603412 4.110000e-37 167.0
18 TraesCS3D01G529400 chrUn 79.487 156 22 6 5638 5792 42603914 42604060 1.180000e-17 102.0
19 TraesCS3D01G529400 chrUn 95.918 49 2 0 2 50 42598111 42598159 5.510000e-11 80.5
20 TraesCS3D01G529400 chrUn 100.000 40 0 0 1174 1213 42599168 42599207 2.560000e-09 75.0
21 TraesCS3D01G529400 chr5A 99.153 118 1 0 48 165 547790128 547790011 5.200000e-51 213.0
22 TraesCS3D01G529400 chr5A 100.000 110 0 0 48 157 69844785 69844894 3.130000e-48 204.0
23 TraesCS3D01G529400 chr4D 100.000 113 0 0 50 162 317234728 317234616 6.730000e-50 209.0
24 TraesCS3D01G529400 chr2A 99.123 114 1 0 46 159 16796583 16796696 8.710000e-49 206.0
25 TraesCS3D01G529400 chr2A 99.115 113 1 0 48 160 187955812 187955924 3.130000e-48 204.0
26 TraesCS3D01G529400 chr2A 98.261 115 2 0 51 165 138184411 138184297 1.130000e-47 202.0
27 TraesCS3D01G529400 chr1D 100.000 110 0 0 49 158 227655419 227655310 3.130000e-48 204.0
28 TraesCS3D01G529400 chr1A 99.115 113 1 0 48 160 376145952 376145840 3.130000e-48 204.0
29 TraesCS3D01G529400 chr2D 100.000 35 0 0 5383 5417 59378500 59378534 1.540000e-06 65.8
30 TraesCS3D01G529400 chr6D 100.000 33 0 0 5385 5417 19283227 19283195 1.990000e-05 62.1
31 TraesCS3D01G529400 chr5D 97.222 36 1 0 5382 5417 471218084 471218119 1.990000e-05 62.1
32 TraesCS3D01G529400 chr7D 100.000 28 0 0 5391 5418 501837736 501837763 1.200000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G529400 chr3D 606889237 606895861 6624 False 12235.000000 12235 100.000000 1 6625 1 chr3D.!!$F1 6624
1 TraesCS3D01G529400 chr3D 606890607 606895717 5110 False 260.500000 363 86.679500 1371 6481 4 chr3D.!!$F2 5110
2 TraesCS3D01G529400 chr3A 739152129 739158369 6240 False 1585.666667 6697 87.643500 180 6618 6 chr3A.!!$F2 6438
3 TraesCS3D01G529400 chrUn 42598111 42604192 6081 False 1047.722222 5302 90.178889 2 6613 9 chrUn.!!$F1 6611

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
67 68 0.038744 AGTACTCCCTCCGTTCCGAA 59.961 55.0 0.0 0.0 0.0 4.30 F
1142 1239 0.033208 CCTCTCTGGTCTCTGCCTCT 60.033 60.0 0.0 0.0 0.0 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1154 1251 0.034059 AAGAACACGGTGGAGCAGAG 59.966 55.000 13.48 0.0 0.00 3.35 R
6485 6679 2.031616 GCTGCACTGAGAGCACCA 59.968 61.111 0.00 0.0 37.02 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 7.336161 CAGTTAACTGATACAGGCTAGTACT 57.664 40.000 28.17 0.00 46.59 2.73
54 55 7.419204 CAGTTAACTGATACAGGCTAGTACTC 58.581 42.308 28.17 0.00 46.59 2.59
55 56 6.546772 AGTTAACTGATACAGGCTAGTACTCC 59.453 42.308 7.48 0.00 35.51 3.85
56 57 3.834938 ACTGATACAGGCTAGTACTCCC 58.165 50.000 0.00 0.91 35.51 4.30
57 58 3.464080 ACTGATACAGGCTAGTACTCCCT 59.536 47.826 0.00 3.67 35.51 4.20
58 59 4.076394 CTGATACAGGCTAGTACTCCCTC 58.924 52.174 11.12 3.30 0.00 4.30
59 60 3.181431 TGATACAGGCTAGTACTCCCTCC 60.181 52.174 11.12 3.86 0.00 4.30
60 61 0.106619 ACAGGCTAGTACTCCCTCCG 60.107 60.000 11.12 5.51 0.00 4.63
61 62 0.106619 CAGGCTAGTACTCCCTCCGT 60.107 60.000 11.12 0.00 0.00 4.69
62 63 0.630134 AGGCTAGTACTCCCTCCGTT 59.370 55.000 0.00 0.00 0.00 4.44
63 64 1.031235 GGCTAGTACTCCCTCCGTTC 58.969 60.000 0.00 0.00 0.00 3.95
64 65 1.031235 GCTAGTACTCCCTCCGTTCC 58.969 60.000 0.00 0.00 0.00 3.62
65 66 1.307097 CTAGTACTCCCTCCGTTCCG 58.693 60.000 0.00 0.00 0.00 4.30
66 67 0.911769 TAGTACTCCCTCCGTTCCGA 59.088 55.000 0.00 0.00 0.00 4.55
67 68 0.038744 AGTACTCCCTCCGTTCCGAA 59.961 55.000 0.00 0.00 0.00 4.30
68 69 1.109609 GTACTCCCTCCGTTCCGAAT 58.890 55.000 0.00 0.00 0.00 3.34
69 70 1.479730 GTACTCCCTCCGTTCCGAATT 59.520 52.381 0.00 0.00 0.00 2.17
70 71 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
71 72 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
72 73 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
73 74 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
74 75 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
75 76 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
76 77 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
77 78 2.597305 CTCCGTTCCGAATTACTTGTCG 59.403 50.000 0.00 0.00 37.01 4.35
78 79 1.060122 CCGTTCCGAATTACTTGTCGC 59.940 52.381 0.00 0.00 35.93 5.19
79 80 1.722464 CGTTCCGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 35.93 5.10
80 81 2.222508 CGTTCCGAATTACTTGTCGCAG 60.223 50.000 0.00 0.00 35.93 5.18
81 82 2.004583 TCCGAATTACTTGTCGCAGG 57.995 50.000 0.00 0.00 35.93 4.85
82 83 1.274167 TCCGAATTACTTGTCGCAGGT 59.726 47.619 0.00 0.91 35.93 4.00
83 84 2.492881 TCCGAATTACTTGTCGCAGGTA 59.507 45.455 0.00 0.00 35.93 3.08
84 85 3.131577 TCCGAATTACTTGTCGCAGGTAT 59.868 43.478 3.46 0.00 35.93 2.73
85 86 3.245284 CCGAATTACTTGTCGCAGGTATG 59.755 47.826 3.46 0.00 35.93 2.39
86 87 3.245284 CGAATTACTTGTCGCAGGTATGG 59.755 47.826 3.46 0.00 0.00 2.74
87 88 4.439057 GAATTACTTGTCGCAGGTATGGA 58.561 43.478 3.46 0.00 0.00 3.41
88 89 4.689612 ATTACTTGTCGCAGGTATGGAT 57.310 40.909 3.46 0.00 0.00 3.41
89 90 2.315925 ACTTGTCGCAGGTATGGATG 57.684 50.000 0.00 0.00 0.00 3.51
90 91 1.555075 ACTTGTCGCAGGTATGGATGT 59.445 47.619 0.00 0.00 0.00 3.06
91 92 2.764010 ACTTGTCGCAGGTATGGATGTA 59.236 45.455 0.00 0.00 0.00 2.29
92 93 3.388024 ACTTGTCGCAGGTATGGATGTAT 59.612 43.478 0.00 0.00 0.00 2.29
93 94 3.660501 TGTCGCAGGTATGGATGTATC 57.339 47.619 0.00 0.00 0.00 2.24
94 95 3.230976 TGTCGCAGGTATGGATGTATCT 58.769 45.455 0.00 0.00 0.00 1.98
95 96 4.403734 TGTCGCAGGTATGGATGTATCTA 58.596 43.478 0.00 0.00 0.00 1.98
96 97 4.459337 TGTCGCAGGTATGGATGTATCTAG 59.541 45.833 0.00 0.00 0.00 2.43
97 98 4.700692 GTCGCAGGTATGGATGTATCTAGA 59.299 45.833 0.00 0.00 0.00 2.43
98 99 5.358442 GTCGCAGGTATGGATGTATCTAGAT 59.642 44.000 10.73 10.73 0.00 1.98
99 100 5.358160 TCGCAGGTATGGATGTATCTAGATG 59.642 44.000 15.79 0.00 0.00 2.90
100 101 5.126222 CGCAGGTATGGATGTATCTAGATGT 59.874 44.000 15.79 1.25 0.00 3.06
101 102 6.318900 CGCAGGTATGGATGTATCTAGATGTA 59.681 42.308 15.79 4.44 0.00 2.29
102 103 7.013750 CGCAGGTATGGATGTATCTAGATGTAT 59.986 40.741 15.79 9.11 0.00 2.29
103 104 8.700051 GCAGGTATGGATGTATCTAGATGTATT 58.300 37.037 15.79 0.00 0.00 1.89
129 130 9.547753 TTTAGTTCTAGATACATCCATTTCTGC 57.452 33.333 0.00 0.00 0.00 4.26
130 131 6.219473 AGTTCTAGATACATCCATTTCTGCG 58.781 40.000 0.00 0.00 0.00 5.18
131 132 6.040955 AGTTCTAGATACATCCATTTCTGCGA 59.959 38.462 0.00 0.00 0.00 5.10
132 133 5.773575 TCTAGATACATCCATTTCTGCGAC 58.226 41.667 0.00 0.00 0.00 5.19
133 134 3.384668 AGATACATCCATTTCTGCGACG 58.615 45.455 0.00 0.00 0.00 5.12
134 135 2.951457 TACATCCATTTCTGCGACGA 57.049 45.000 0.00 0.00 0.00 4.20
135 136 1.645034 ACATCCATTTCTGCGACGAG 58.355 50.000 0.00 0.00 0.00 4.18
136 137 1.066858 ACATCCATTTCTGCGACGAGT 60.067 47.619 0.00 0.00 0.00 4.18
137 138 2.165641 ACATCCATTTCTGCGACGAGTA 59.834 45.455 0.00 0.00 0.00 2.59
138 139 3.186909 CATCCATTTCTGCGACGAGTAA 58.813 45.455 0.00 0.00 0.00 2.24
139 140 3.520290 TCCATTTCTGCGACGAGTAAT 57.480 42.857 0.00 0.00 0.00 1.89
140 141 3.857052 TCCATTTCTGCGACGAGTAATT 58.143 40.909 0.00 0.00 0.00 1.40
141 142 4.250464 TCCATTTCTGCGACGAGTAATTT 58.750 39.130 0.00 0.00 0.00 1.82
142 143 4.092821 TCCATTTCTGCGACGAGTAATTTG 59.907 41.667 0.00 0.00 0.00 2.32
143 144 4.334443 CATTTCTGCGACGAGTAATTTGG 58.666 43.478 0.00 0.00 0.00 3.28
144 145 3.306917 TTCTGCGACGAGTAATTTGGA 57.693 42.857 0.00 0.00 0.00 3.53
145 146 3.306917 TCTGCGACGAGTAATTTGGAA 57.693 42.857 0.00 0.00 0.00 3.53
146 147 2.991190 TCTGCGACGAGTAATTTGGAAC 59.009 45.455 0.00 0.00 0.00 3.62
147 148 1.722464 TGCGACGAGTAATTTGGAACG 59.278 47.619 0.00 0.00 0.00 3.95
148 149 1.060122 GCGACGAGTAATTTGGAACGG 59.940 52.381 0.00 0.00 0.00 4.44
149 150 2.598589 CGACGAGTAATTTGGAACGGA 58.401 47.619 0.00 0.00 0.00 4.69
150 151 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
151 152 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
152 153 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
153 154 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
154 155 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
168 169 3.577919 GGAGGGAGTAGATAAGAAGGCA 58.422 50.000 0.00 0.00 0.00 4.75
169 170 3.967987 GGAGGGAGTAGATAAGAAGGCAA 59.032 47.826 0.00 0.00 0.00 4.52
173 174 5.129650 AGGGAGTAGATAAGAAGGCAAAGAC 59.870 44.000 0.00 0.00 0.00 3.01
175 176 5.129650 GGAGTAGATAAGAAGGCAAAGACCT 59.870 44.000 0.00 0.00 43.91 3.85
198 237 7.933033 ACCTTTGACAGCAATGTTGATAAAAAT 59.067 29.630 3.62 0.00 33.25 1.82
215 257 8.213679 TGATAAAAATCCCTGATACTCCAAGAG 58.786 37.037 0.00 0.00 35.52 2.85
260 303 1.662446 GACCGCCGACTGACGAAAA 60.662 57.895 0.22 0.00 45.77 2.29
297 354 0.250770 GAGGACCCCAGGTTTGACAC 60.251 60.000 0.00 0.00 35.25 3.67
298 355 0.991355 AGGACCCCAGGTTTGACACA 60.991 55.000 0.00 0.00 35.25 3.72
299 356 0.112412 GGACCCCAGGTTTGACACAT 59.888 55.000 0.00 0.00 35.25 3.21
300 357 1.247567 GACCCCAGGTTTGACACATG 58.752 55.000 0.00 0.00 35.25 3.21
301 358 0.850100 ACCCCAGGTTTGACACATGA 59.150 50.000 0.00 0.00 39.73 3.07
302 359 1.216678 ACCCCAGGTTTGACACATGAA 59.783 47.619 0.00 0.00 39.73 2.57
303 360 1.888512 CCCCAGGTTTGACACATGAAG 59.111 52.381 0.00 0.00 39.73 3.02
304 361 2.488891 CCCCAGGTTTGACACATGAAGA 60.489 50.000 0.00 0.00 39.73 2.87
305 362 3.424703 CCCAGGTTTGACACATGAAGAT 58.575 45.455 0.00 0.00 39.73 2.40
306 363 3.192001 CCCAGGTTTGACACATGAAGATG 59.808 47.826 0.00 0.00 39.73 2.90
307 364 4.074259 CCAGGTTTGACACATGAAGATGA 58.926 43.478 0.00 0.00 39.73 2.92
308 365 4.520111 CCAGGTTTGACACATGAAGATGAA 59.480 41.667 0.00 0.00 39.73 2.57
309 366 5.335426 CCAGGTTTGACACATGAAGATGAAG 60.335 44.000 0.00 0.00 39.73 3.02
310 367 5.471116 CAGGTTTGACACATGAAGATGAAGA 59.529 40.000 0.00 0.00 39.73 2.87
311 368 5.704515 AGGTTTGACACATGAAGATGAAGAG 59.295 40.000 0.00 0.00 33.36 2.85
321 378 3.260740 GAAGATGAAGAGCAGGTCAGTG 58.739 50.000 1.66 0.00 0.00 3.66
392 450 5.574188 ACTTGTCTTTAGGGAAATCAGCAT 58.426 37.500 0.00 0.00 0.00 3.79
409 467 4.082081 TCAGCATCTTTACTTGCCATTTGG 60.082 41.667 0.00 0.00 39.72 3.28
424 482 3.250744 CATTTGGTCATGAAGCAAGCAG 58.749 45.455 0.00 0.00 45.50 4.24
425 483 1.985473 TTGGTCATGAAGCAAGCAGT 58.015 45.000 0.00 0.00 40.34 4.40
426 484 2.857186 TGGTCATGAAGCAAGCAGTA 57.143 45.000 0.00 0.00 30.91 2.74
427 485 3.354948 TGGTCATGAAGCAAGCAGTAT 57.645 42.857 0.00 0.00 30.91 2.12
428 486 3.689347 TGGTCATGAAGCAAGCAGTATT 58.311 40.909 0.00 0.00 30.91 1.89
429 487 4.081406 TGGTCATGAAGCAAGCAGTATTT 58.919 39.130 0.00 0.00 30.91 1.40
430 488 4.156556 TGGTCATGAAGCAAGCAGTATTTC 59.843 41.667 0.00 0.00 30.91 2.17
431 489 4.439289 GGTCATGAAGCAAGCAGTATTTCC 60.439 45.833 0.00 0.00 0.00 3.13
432 490 3.696051 TCATGAAGCAAGCAGTATTTCCC 59.304 43.478 0.00 0.00 0.00 3.97
433 491 3.439857 TGAAGCAAGCAGTATTTCCCT 57.560 42.857 0.00 0.00 0.00 4.20
434 492 3.084039 TGAAGCAAGCAGTATTTCCCTG 58.916 45.455 0.00 0.00 0.00 4.45
456 514 4.818534 CACTTATGCATCATTACGGCTT 57.181 40.909 0.19 0.00 0.00 4.35
477 535 6.640092 GGCTTCTATGAATTGCAGCTTAATTC 59.360 38.462 19.33 19.33 42.22 2.17
584 647 3.268603 CCAGAACACACGTGCGCA 61.269 61.111 17.22 5.66 0.00 6.09
585 648 2.246397 CAGAACACACGTGCGCAG 59.754 61.111 12.22 7.95 0.00 5.18
587 650 4.666532 GAACACACGTGCGCAGGC 62.667 66.667 28.53 9.10 40.52 4.85
773 860 3.122971 GGCAAACCGCGGGTAGAC 61.123 66.667 31.76 16.96 43.84 2.59
859 946 8.738645 TTATAAAAATCCTCTCTTGGCTCTTC 57.261 34.615 0.00 0.00 0.00 2.87
860 947 3.643199 AAATCCTCTCTTGGCTCTTCC 57.357 47.619 0.00 0.00 0.00 3.46
861 948 2.566708 ATCCTCTCTTGGCTCTTCCT 57.433 50.000 0.00 0.00 35.26 3.36
863 950 0.829990 CCTCTCTTGGCTCTTCCTCC 59.170 60.000 0.00 0.00 35.26 4.30
867 954 1.990060 CTTGGCTCTTCCTCCCCGA 60.990 63.158 0.00 0.00 35.26 5.14
868 955 1.306997 TTGGCTCTTCCTCCCCGAT 60.307 57.895 0.00 0.00 35.26 4.18
869 956 0.914417 TTGGCTCTTCCTCCCCGATT 60.914 55.000 0.00 0.00 35.26 3.34
871 958 1.051556 GGCTCTTCCTCCCCGATTCT 61.052 60.000 0.00 0.00 0.00 2.40
872 959 0.105778 GCTCTTCCTCCCCGATTCTG 59.894 60.000 0.00 0.00 0.00 3.02
873 960 1.490574 CTCTTCCTCCCCGATTCTGT 58.509 55.000 0.00 0.00 0.00 3.41
887 977 5.344066 CCGATTCTGTATATATTCGCTGCT 58.656 41.667 0.00 0.00 0.00 4.24
889 979 5.276114 CGATTCTGTATATATTCGCTGCTGC 60.276 44.000 5.34 5.34 0.00 5.25
891 981 4.488879 TCTGTATATATTCGCTGCTGCTG 58.511 43.478 14.03 0.77 36.97 4.41
892 982 4.021981 TCTGTATATATTCGCTGCTGCTGT 60.022 41.667 14.03 2.12 36.97 4.40
893 983 3.989817 TGTATATATTCGCTGCTGCTGTG 59.010 43.478 14.03 13.09 36.97 3.66
894 984 1.220529 TATATTCGCTGCTGCTGTGC 58.779 50.000 14.03 8.62 36.97 4.57
954 1044 0.110644 CGCTCTTGTTCGTTCTTGGC 60.111 55.000 0.00 0.00 0.00 4.52
1014 1105 1.153349 GGAGATGGAGAACGGGCAC 60.153 63.158 0.00 0.00 0.00 5.01
1129 1226 0.903454 CCACGGTAACCACCCTCTCT 60.903 60.000 0.00 0.00 42.43 3.10
1131 1228 0.903454 ACGGTAACCACCCTCTCTGG 60.903 60.000 0.00 0.00 42.43 3.86
1142 1239 0.033208 CCTCTCTGGTCTCTGCCTCT 60.033 60.000 0.00 0.00 0.00 3.69
1143 1240 1.392589 CTCTCTGGTCTCTGCCTCTC 58.607 60.000 0.00 0.00 0.00 3.20
1144 1241 0.701147 TCTCTGGTCTCTGCCTCTCA 59.299 55.000 0.00 0.00 0.00 3.27
1145 1242 0.817013 CTCTGGTCTCTGCCTCTCAC 59.183 60.000 0.00 0.00 0.00 3.51
1146 1243 0.613292 TCTGGTCTCTGCCTCTCACC 60.613 60.000 0.00 0.00 0.00 4.02
1147 1244 1.943116 CTGGTCTCTGCCTCTCACCG 61.943 65.000 0.00 0.00 0.00 4.94
1148 1245 1.679305 GGTCTCTGCCTCTCACCGA 60.679 63.158 0.00 0.00 0.00 4.69
1149 1246 1.662438 GGTCTCTGCCTCTCACCGAG 61.662 65.000 0.00 0.00 39.57 4.63
1157 1254 2.805897 CTCTCACCGAGGATGCTCT 58.194 57.895 12.78 0.00 36.06 4.09
1158 1255 0.385029 CTCTCACCGAGGATGCTCTG 59.615 60.000 12.78 8.41 36.06 3.35
1159 1256 1.227205 CTCACCGAGGATGCTCTGC 60.227 63.158 12.78 0.00 0.00 4.26
1160 1257 1.674764 CTCACCGAGGATGCTCTGCT 61.675 60.000 12.78 0.00 0.00 4.24
1161 1258 1.227205 CACCGAGGATGCTCTGCTC 60.227 63.158 12.78 0.00 38.87 4.26
1162 1259 2.420890 CCGAGGATGCTCTGCTCC 59.579 66.667 12.78 0.00 39.05 4.70
1163 1260 2.429767 CCGAGGATGCTCTGCTCCA 61.430 63.158 12.78 0.00 39.05 3.86
1164 1261 1.227205 CGAGGATGCTCTGCTCCAC 60.227 63.158 12.78 4.25 39.05 4.02
1165 1262 1.145819 GAGGATGCTCTGCTCCACC 59.854 63.158 7.03 0.00 36.38 4.61
1166 1263 2.202987 GGATGCTCTGCTCCACCG 60.203 66.667 0.00 0.00 0.00 4.94
1167 1264 2.581354 GATGCTCTGCTCCACCGT 59.419 61.111 0.00 0.00 0.00 4.83
1168 1265 1.812922 GATGCTCTGCTCCACCGTG 60.813 63.158 0.00 0.00 0.00 4.94
1169 1266 2.513026 GATGCTCTGCTCCACCGTGT 62.513 60.000 0.00 0.00 0.00 4.49
1170 1267 2.031163 GCTCTGCTCCACCGTGTT 59.969 61.111 0.00 0.00 0.00 3.32
1171 1268 2.029844 GCTCTGCTCCACCGTGTTC 61.030 63.158 0.00 0.00 0.00 3.18
1172 1269 1.668294 CTCTGCTCCACCGTGTTCT 59.332 57.895 0.00 0.00 0.00 3.01
1225 1381 2.026641 GCTCTGCCATTTGGAATGCTA 58.973 47.619 0.00 0.00 37.39 3.49
1235 1391 5.393461 CCATTTGGAATGCTAGTTTCTGTCC 60.393 44.000 7.28 0.00 37.39 4.02
1273 1433 1.001048 CCGATGCAATGCAATAGGTGG 60.001 52.381 13.45 4.25 43.62 4.61
1357 1517 3.447918 AATCATGTAGCAGCATTTGGC 57.552 42.857 0.00 0.00 45.30 4.52
6486 6680 8.969121 TCATATCTTACAAATGTGCTTTTGTG 57.031 30.769 19.67 9.23 46.43 3.33
6494 6688 1.024271 TGTGCTTTTGTGGTGCTCTC 58.976 50.000 0.00 0.00 0.00 3.20
6496 6690 1.002033 GTGCTTTTGTGGTGCTCTCAG 60.002 52.381 0.00 0.00 0.00 3.35
6595 6789 2.928801 AACCTTTGCCACAATTTCCC 57.071 45.000 0.00 0.00 0.00 3.97
6596 6790 2.101640 ACCTTTGCCACAATTTCCCT 57.898 45.000 0.00 0.00 0.00 4.20
6613 6807 1.559219 CCCTGTGTATGACATGTGGGA 59.441 52.381 1.15 0.00 37.10 4.37
6618 6812 3.196901 TGTGTATGACATGTGGGACCTAC 59.803 47.826 1.15 0.00 0.00 3.18
6619 6813 3.196901 GTGTATGACATGTGGGACCTACA 59.803 47.826 13.67 13.67 0.00 2.74
6620 6814 3.450817 TGTATGACATGTGGGACCTACAG 59.549 47.826 16.48 10.58 0.00 2.74
6621 6815 1.275666 TGACATGTGGGACCTACAGG 58.724 55.000 19.68 19.68 42.17 4.00
6622 6816 0.107654 GACATGTGGGACCTACAGGC 60.108 60.000 20.99 11.06 39.32 4.85
6623 6817 1.224592 CATGTGGGACCTACAGGCC 59.775 63.158 16.48 0.00 39.32 5.19
6624 6818 1.229820 ATGTGGGACCTACAGGCCA 60.230 57.895 16.48 1.77 39.32 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.646360 ACAGGTGTTGATATCCCTAAAAACG 59.354 40.000 0.00 0.00 0.00 3.60
12 13 6.495872 AGTTAACTGAGGTACAGGTGTTGATA 59.504 38.462 7.48 0.00 46.95 2.15
41 42 0.106619 CGGAGGGAGTACTAGCCTGT 60.107 60.000 0.00 0.00 0.00 4.00
60 61 2.093783 CCTGCGACAAGTAATTCGGAAC 59.906 50.000 0.00 0.00 35.02 3.62
61 62 2.289195 ACCTGCGACAAGTAATTCGGAA 60.289 45.455 0.00 0.00 35.02 4.30
62 63 1.274167 ACCTGCGACAAGTAATTCGGA 59.726 47.619 0.00 0.00 35.73 4.55
63 64 1.722011 ACCTGCGACAAGTAATTCGG 58.278 50.000 0.00 0.00 35.73 4.30
64 65 3.245284 CCATACCTGCGACAAGTAATTCG 59.755 47.826 0.00 0.00 38.31 3.34
65 66 4.439057 TCCATACCTGCGACAAGTAATTC 58.561 43.478 0.00 0.00 0.00 2.17
66 67 4.481368 TCCATACCTGCGACAAGTAATT 57.519 40.909 0.00 0.00 0.00 1.40
67 68 4.141711 ACATCCATACCTGCGACAAGTAAT 60.142 41.667 0.00 0.00 0.00 1.89
68 69 3.196901 ACATCCATACCTGCGACAAGTAA 59.803 43.478 0.00 0.00 0.00 2.24
69 70 2.764010 ACATCCATACCTGCGACAAGTA 59.236 45.455 0.00 0.00 0.00 2.24
70 71 1.555075 ACATCCATACCTGCGACAAGT 59.445 47.619 0.00 0.00 0.00 3.16
71 72 2.315925 ACATCCATACCTGCGACAAG 57.684 50.000 0.00 0.00 0.00 3.16
72 73 3.641436 AGATACATCCATACCTGCGACAA 59.359 43.478 0.00 0.00 0.00 3.18
73 74 3.230976 AGATACATCCATACCTGCGACA 58.769 45.455 0.00 0.00 0.00 4.35
74 75 3.944055 AGATACATCCATACCTGCGAC 57.056 47.619 0.00 0.00 0.00 5.19
75 76 4.918588 TCTAGATACATCCATACCTGCGA 58.081 43.478 0.00 0.00 0.00 5.10
76 77 5.126222 ACATCTAGATACATCCATACCTGCG 59.874 44.000 4.54 0.00 0.00 5.18
77 78 6.537453 ACATCTAGATACATCCATACCTGC 57.463 41.667 4.54 0.00 0.00 4.85
103 104 9.547753 GCAGAAATGGATGTATCTAGAACTAAA 57.452 33.333 0.00 0.00 0.00 1.85
104 105 7.867909 CGCAGAAATGGATGTATCTAGAACTAA 59.132 37.037 0.00 0.00 0.00 2.24
105 106 7.230712 TCGCAGAAATGGATGTATCTAGAACTA 59.769 37.037 0.00 0.00 0.00 2.24
106 107 6.040955 TCGCAGAAATGGATGTATCTAGAACT 59.959 38.462 0.00 0.00 0.00 3.01
107 108 6.144724 GTCGCAGAAATGGATGTATCTAGAAC 59.855 42.308 0.00 0.00 39.69 3.01
108 109 6.216569 GTCGCAGAAATGGATGTATCTAGAA 58.783 40.000 0.00 0.00 39.69 2.10
109 110 5.562890 CGTCGCAGAAATGGATGTATCTAGA 60.563 44.000 0.00 0.00 39.69 2.43
110 111 4.618912 CGTCGCAGAAATGGATGTATCTAG 59.381 45.833 0.00 0.00 39.69 2.43
111 112 4.277423 TCGTCGCAGAAATGGATGTATCTA 59.723 41.667 0.00 0.00 39.69 1.98
112 113 3.068165 TCGTCGCAGAAATGGATGTATCT 59.932 43.478 0.00 0.00 39.69 1.98
113 114 3.381045 TCGTCGCAGAAATGGATGTATC 58.619 45.455 0.00 0.00 39.69 2.24
114 115 3.181475 ACTCGTCGCAGAAATGGATGTAT 60.181 43.478 0.00 0.00 39.69 2.29
115 116 2.165641 ACTCGTCGCAGAAATGGATGTA 59.834 45.455 0.00 0.00 39.69 2.29
116 117 1.066858 ACTCGTCGCAGAAATGGATGT 60.067 47.619 0.00 0.00 39.69 3.06
117 118 1.645034 ACTCGTCGCAGAAATGGATG 58.355 50.000 0.00 0.00 39.69 3.51
118 119 3.520290 TTACTCGTCGCAGAAATGGAT 57.480 42.857 0.00 0.00 39.69 3.41
119 120 3.520290 ATTACTCGTCGCAGAAATGGA 57.480 42.857 0.00 0.00 39.69 3.41
120 121 4.334443 CAAATTACTCGTCGCAGAAATGG 58.666 43.478 0.00 0.00 39.69 3.16
121 122 4.092821 TCCAAATTACTCGTCGCAGAAATG 59.907 41.667 0.00 0.00 39.69 2.32
122 123 4.250464 TCCAAATTACTCGTCGCAGAAAT 58.750 39.130 0.00 0.00 39.69 2.17
123 124 3.655486 TCCAAATTACTCGTCGCAGAAA 58.345 40.909 0.00 0.00 39.69 2.52
124 125 3.306917 TCCAAATTACTCGTCGCAGAA 57.693 42.857 0.00 0.00 39.69 3.02
125 126 2.991190 GTTCCAAATTACTCGTCGCAGA 59.009 45.455 0.00 0.00 0.00 4.26
126 127 2.222508 CGTTCCAAATTACTCGTCGCAG 60.223 50.000 0.00 0.00 0.00 5.18
127 128 1.722464 CGTTCCAAATTACTCGTCGCA 59.278 47.619 0.00 0.00 0.00 5.10
128 129 1.060122 CCGTTCCAAATTACTCGTCGC 59.940 52.381 0.00 0.00 0.00 5.19
129 130 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
130 131 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
131 132 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
132 133 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
133 134 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
134 135 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
135 136 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
136 137 4.355549 TCTACTCCCTCCGTTCCAAATTA 58.644 43.478 0.00 0.00 0.00 1.40
137 138 3.178865 TCTACTCCCTCCGTTCCAAATT 58.821 45.455 0.00 0.00 0.00 1.82
138 139 2.829023 TCTACTCCCTCCGTTCCAAAT 58.171 47.619 0.00 0.00 0.00 2.32
139 140 2.314071 TCTACTCCCTCCGTTCCAAA 57.686 50.000 0.00 0.00 0.00 3.28
140 141 2.544844 ATCTACTCCCTCCGTTCCAA 57.455 50.000 0.00 0.00 0.00 3.53
141 142 3.203710 TCTTATCTACTCCCTCCGTTCCA 59.796 47.826 0.00 0.00 0.00 3.53
142 143 3.830121 TCTTATCTACTCCCTCCGTTCC 58.170 50.000 0.00 0.00 0.00 3.62
143 144 4.278919 CCTTCTTATCTACTCCCTCCGTTC 59.721 50.000 0.00 0.00 0.00 3.95
144 145 4.216708 CCTTCTTATCTACTCCCTCCGTT 58.783 47.826 0.00 0.00 0.00 4.44
145 146 3.834938 CCTTCTTATCTACTCCCTCCGT 58.165 50.000 0.00 0.00 0.00 4.69
146 147 2.559231 GCCTTCTTATCTACTCCCTCCG 59.441 54.545 0.00 0.00 0.00 4.63
147 148 3.577919 TGCCTTCTTATCTACTCCCTCC 58.422 50.000 0.00 0.00 0.00 4.30
148 149 5.364157 TCTTTGCCTTCTTATCTACTCCCTC 59.636 44.000 0.00 0.00 0.00 4.30
149 150 5.129650 GTCTTTGCCTTCTTATCTACTCCCT 59.870 44.000 0.00 0.00 0.00 4.20
150 151 5.361427 GTCTTTGCCTTCTTATCTACTCCC 58.639 45.833 0.00 0.00 0.00 4.30
151 152 5.129650 AGGTCTTTGCCTTCTTATCTACTCC 59.870 44.000 0.00 0.00 34.71 3.85
152 153 6.228616 AGGTCTTTGCCTTCTTATCTACTC 57.771 41.667 0.00 0.00 34.71 2.59
153 154 6.628644 AAGGTCTTTGCCTTCTTATCTACT 57.371 37.500 0.00 0.00 45.03 2.57
168 169 4.402155 TCAACATTGCTGTCAAAGGTCTTT 59.598 37.500 0.00 0.00 35.56 2.52
169 170 3.953612 TCAACATTGCTGTCAAAGGTCTT 59.046 39.130 0.00 0.00 35.56 3.01
173 174 7.712264 TTTTTATCAACATTGCTGTCAAAGG 57.288 32.000 0.00 0.00 35.56 3.11
175 176 7.387397 GGGATTTTTATCAACATTGCTGTCAAA 59.613 33.333 0.00 0.00 35.56 2.69
176 177 6.873076 GGGATTTTTATCAACATTGCTGTCAA 59.127 34.615 0.00 0.00 33.36 3.18
177 178 6.211184 AGGGATTTTTATCAACATTGCTGTCA 59.789 34.615 0.00 0.00 33.36 3.58
198 237 4.061131 TGAACTCTTGGAGTATCAGGGA 57.939 45.455 0.41 0.00 42.59 4.20
215 257 2.294233 TCTTGTTTCCAGCAGCATGAAC 59.706 45.455 0.00 0.00 39.69 3.18
260 303 7.001073 GGGTCCTCATGAATTTAATCTTAGCT 58.999 38.462 0.00 0.00 0.00 3.32
297 354 3.870274 TGACCTGCTCTTCATCTTCATG 58.130 45.455 0.00 0.00 0.00 3.07
298 355 3.518705 ACTGACCTGCTCTTCATCTTCAT 59.481 43.478 0.00 0.00 0.00 2.57
299 356 2.902486 ACTGACCTGCTCTTCATCTTCA 59.098 45.455 0.00 0.00 0.00 3.02
300 357 3.260740 CACTGACCTGCTCTTCATCTTC 58.739 50.000 0.00 0.00 0.00 2.87
301 358 2.636893 ACACTGACCTGCTCTTCATCTT 59.363 45.455 0.00 0.00 0.00 2.40
302 359 2.255406 ACACTGACCTGCTCTTCATCT 58.745 47.619 0.00 0.00 0.00 2.90
303 360 2.758736 ACACTGACCTGCTCTTCATC 57.241 50.000 0.00 0.00 0.00 2.92
304 361 3.771479 TGATACACTGACCTGCTCTTCAT 59.229 43.478 0.00 0.00 0.00 2.57
305 362 3.165071 TGATACACTGACCTGCTCTTCA 58.835 45.455 0.00 0.00 0.00 3.02
306 363 3.779759 CTGATACACTGACCTGCTCTTC 58.220 50.000 0.00 0.00 0.00 2.87
307 364 2.093764 GCTGATACACTGACCTGCTCTT 60.094 50.000 0.00 0.00 0.00 2.85
308 365 1.480137 GCTGATACACTGACCTGCTCT 59.520 52.381 0.00 0.00 0.00 4.09
309 366 1.205655 TGCTGATACACTGACCTGCTC 59.794 52.381 0.00 0.00 0.00 4.26
310 367 1.066573 GTGCTGATACACTGACCTGCT 60.067 52.381 0.00 0.00 37.58 4.24
311 368 1.363744 GTGCTGATACACTGACCTGC 58.636 55.000 0.00 0.00 37.58 4.85
321 378 8.983307 AAAGTACAGTAGTAAAGTGCTGATAC 57.017 34.615 9.52 8.09 34.50 2.24
363 420 6.433093 TGATTTCCCTAAAGACAAGTAAAGGC 59.567 38.462 0.00 0.00 0.00 4.35
392 450 5.076182 TCATGACCAAATGGCAAGTAAAGA 58.924 37.500 0.00 0.00 39.32 2.52
409 467 4.439289 GGGAAATACTGCTTGCTTCATGAC 60.439 45.833 0.00 0.00 0.00 3.06
435 493 4.512944 AGAAGCCGTAATGATGCATAAGTG 59.487 41.667 0.00 0.00 0.00 3.16
443 501 6.082338 GCAATTCATAGAAGCCGTAATGATG 58.918 40.000 0.00 0.00 0.00 3.07
455 513 7.557358 TGGAGAATTAAGCTGCAATTCATAGAA 59.443 33.333 24.90 10.96 42.37 2.10
456 514 7.056006 TGGAGAATTAAGCTGCAATTCATAGA 58.944 34.615 24.90 11.06 42.37 1.98
477 535 1.664016 GCGTGCACACAGAATTTGGAG 60.664 52.381 18.64 0.00 0.00 3.86
584 647 2.201771 GGTATCGGAGGGGAGCCT 59.798 66.667 0.00 0.00 0.00 4.58
585 648 2.122989 TGGTATCGGAGGGGAGCC 60.123 66.667 0.00 0.00 0.00 4.70
587 650 2.201022 CGGTGGTATCGGAGGGGAG 61.201 68.421 0.00 0.00 0.00 4.30
588 651 2.123597 CGGTGGTATCGGAGGGGA 60.124 66.667 0.00 0.00 0.00 4.81
844 931 0.829990 GGAGGAAGAGCCAAGAGAGG 59.170 60.000 0.00 0.00 40.02 3.69
859 946 5.736492 GCGAATATATACAGAATCGGGGAGG 60.736 48.000 4.83 0.00 0.00 4.30
860 947 5.067936 AGCGAATATATACAGAATCGGGGAG 59.932 44.000 4.83 0.00 0.00 4.30
861 948 4.954202 AGCGAATATATACAGAATCGGGGA 59.046 41.667 4.83 0.00 0.00 4.81
863 950 4.504461 GCAGCGAATATATACAGAATCGGG 59.496 45.833 4.83 0.00 0.00 5.14
889 979 2.743928 GAGAGCAACCCCGCACAG 60.744 66.667 0.00 0.00 0.00 3.66
898 988 2.435059 GGACAGGCCGAGAGCAAC 60.435 66.667 0.00 0.00 46.50 4.17
899 989 2.217038 AAGGACAGGCCGAGAGCAA 61.217 57.895 0.00 0.00 46.50 3.91
1129 1226 1.979155 CGGTGAGAGGCAGAGACCA 60.979 63.158 0.00 0.00 0.00 4.02
1131 1228 1.806568 CTCGGTGAGAGGCAGAGAC 59.193 63.158 0.00 0.00 43.20 3.36
1142 1239 1.670949 GAGCAGAGCATCCTCGGTGA 61.671 60.000 0.00 0.00 43.05 4.02
1143 1240 1.227205 GAGCAGAGCATCCTCGGTG 60.227 63.158 0.00 0.00 43.05 4.94
1144 1241 2.430610 GGAGCAGAGCATCCTCGGT 61.431 63.158 0.00 0.00 43.05 4.69
1145 1242 2.420890 GGAGCAGAGCATCCTCGG 59.579 66.667 0.00 0.00 43.05 4.63
1146 1243 1.227205 GTGGAGCAGAGCATCCTCG 60.227 63.158 8.29 0.00 43.05 4.63
1147 1244 1.145819 GGTGGAGCAGAGCATCCTC 59.854 63.158 8.29 5.54 36.50 3.71
1148 1245 2.729479 CGGTGGAGCAGAGCATCCT 61.729 63.158 8.29 0.00 36.50 3.24
1149 1246 2.202987 CGGTGGAGCAGAGCATCC 60.203 66.667 0.00 0.00 33.66 3.51
1150 1247 1.812922 CACGGTGGAGCAGAGCATC 60.813 63.158 0.00 0.00 0.00 3.91
1151 1248 2.116983 AACACGGTGGAGCAGAGCAT 62.117 55.000 13.48 0.00 0.00 3.79
1152 1249 2.715532 GAACACGGTGGAGCAGAGCA 62.716 60.000 13.48 0.00 0.00 4.26
1153 1250 2.029844 GAACACGGTGGAGCAGAGC 61.030 63.158 13.48 0.00 0.00 4.09
1154 1251 0.034059 AAGAACACGGTGGAGCAGAG 59.966 55.000 13.48 0.00 0.00 3.35
1155 1252 0.249868 CAAGAACACGGTGGAGCAGA 60.250 55.000 13.48 0.00 0.00 4.26
1156 1253 0.249868 TCAAGAACACGGTGGAGCAG 60.250 55.000 13.48 0.00 0.00 4.24
1157 1254 0.531974 GTCAAGAACACGGTGGAGCA 60.532 55.000 13.48 0.00 0.00 4.26
1158 1255 1.228657 GGTCAAGAACACGGTGGAGC 61.229 60.000 13.48 5.51 0.00 4.70
1159 1256 0.393077 AGGTCAAGAACACGGTGGAG 59.607 55.000 13.48 0.00 0.00 3.86
1160 1257 0.105964 CAGGTCAAGAACACGGTGGA 59.894 55.000 13.48 0.00 0.00 4.02
1161 1258 0.179056 ACAGGTCAAGAACACGGTGG 60.179 55.000 13.48 0.00 0.00 4.61
1162 1259 0.937304 CACAGGTCAAGAACACGGTG 59.063 55.000 6.58 6.58 0.00 4.94
1163 1260 0.179056 CCACAGGTCAAGAACACGGT 60.179 55.000 0.00 0.00 0.00 4.83
1164 1261 1.507141 GCCACAGGTCAAGAACACGG 61.507 60.000 0.00 0.00 0.00 4.94
1165 1262 0.813610 TGCCACAGGTCAAGAACACG 60.814 55.000 0.00 0.00 0.00 4.49
1166 1263 0.663153 GTGCCACAGGTCAAGAACAC 59.337 55.000 0.00 0.00 0.00 3.32
1167 1264 0.254462 TGTGCCACAGGTCAAGAACA 59.746 50.000 0.00 0.00 0.00 3.18
1168 1265 0.947244 CTGTGCCACAGGTCAAGAAC 59.053 55.000 17.22 0.00 42.35 3.01
1169 1266 0.819259 GCTGTGCCACAGGTCAAGAA 60.819 55.000 25.24 0.00 46.01 2.52
1170 1267 1.227943 GCTGTGCCACAGGTCAAGA 60.228 57.895 25.24 0.00 46.01 3.02
1171 1268 1.526686 TGCTGTGCCACAGGTCAAG 60.527 57.895 25.24 0.92 46.01 3.02
1172 1269 1.823470 GTGCTGTGCCACAGGTCAA 60.823 57.895 25.24 0.00 46.01 3.18
1220 1376 3.502211 CCAAAACGGACAGAAACTAGCAT 59.498 43.478 0.00 0.00 36.56 3.79
1225 1381 2.572290 CTCCCAAAACGGACAGAAACT 58.428 47.619 0.00 0.00 36.56 2.66
1235 1391 0.240945 GGTCACATGCTCCCAAAACG 59.759 55.000 0.00 0.00 0.00 3.60
1273 1433 4.564406 CCAAGAGGATAGGATACATGTGGC 60.564 50.000 9.11 0.00 36.20 5.01
1357 1517 7.693969 AGAGACATTTAAGGAGTCAATTTGG 57.306 36.000 0.00 0.00 34.80 3.28
6485 6679 2.031616 GCTGCACTGAGAGCACCA 59.968 61.111 0.00 0.00 37.02 4.17
6486 6680 2.346739 AGCTGCACTGAGAGCACC 59.653 61.111 0.00 0.00 37.02 5.01
6496 6690 0.670162 ACCACATTCAACAGCTGCAC 59.330 50.000 15.27 0.00 0.00 4.57
6595 6789 2.237143 AGGTCCCACATGTCATACACAG 59.763 50.000 0.00 0.00 38.85 3.66
6596 6790 2.265367 AGGTCCCACATGTCATACACA 58.735 47.619 0.00 0.00 40.18 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.