Multiple sequence alignment - TraesCS3D01G527800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G527800 chr3D 100.000 6035 0 0 1 6035 606086884 606080850 0.000000e+00 11145.0
1 TraesCS3D01G527800 chr3D 84.878 410 59 2 12 421 606148244 606147838 1.570000e-110 411.0
2 TraesCS3D01G527800 chr3D 74.059 239 49 11 146 376 606305101 606305334 1.080000e-12 86.1
3 TraesCS3D01G527800 chr3B 93.805 1259 59 11 3979 5233 816007927 816009170 0.000000e+00 1875.0
4 TraesCS3D01G527800 chr3B 93.107 1030 40 16 2705 3730 816006934 816007936 0.000000e+00 1480.0
5 TraesCS3D01G527800 chr3B 87.257 1028 57 27 917 1879 816005166 816006184 0.000000e+00 1105.0
6 TraesCS3D01G527800 chr3B 87.289 771 50 19 1927 2663 816006179 816006935 0.000000e+00 837.0
7 TraesCS3D01G527800 chr3B 89.041 584 42 10 5467 6034 816009288 816009865 0.000000e+00 704.0
8 TraesCS3D01G527800 chr3B 93.824 421 26 0 1 421 816004250 816004670 8.530000e-178 634.0
9 TraesCS3D01G527800 chr3B 86.288 598 58 15 1456 2043 406133577 406132994 3.970000e-176 628.0
10 TraesCS3D01G527800 chr3B 85.835 473 40 15 422 882 816004713 816005170 1.520000e-130 477.0
11 TraesCS3D01G527800 chr3B 79.077 325 62 5 100 418 815974841 815975165 1.020000e-52 219.0
12 TraesCS3D01G527800 chr3B 96.512 86 2 1 3730 3815 10104431 10104347 2.270000e-29 141.0
13 TraesCS3D01G527800 chr3B 84.615 91 14 0 286 376 815869629 815869539 2.320000e-14 91.6
14 TraesCS3D01G527800 chr3B 81.188 101 18 1 265 364 813805350 813805450 5.010000e-11 80.5
15 TraesCS3D01G527800 chr3B 96.875 32 1 0 5306 5337 692011117 692011086 3.000000e-03 54.7
16 TraesCS3D01G527800 chr3A 89.860 1213 79 23 4322 5514 738132109 738133297 0.000000e+00 1519.0
17 TraesCS3D01G527800 chr3A 90.009 1081 53 26 899 1942 738129314 738130376 0.000000e+00 1347.0
18 TraesCS3D01G527800 chr3A 93.649 740 45 2 2514 3252 738130752 738131490 0.000000e+00 1105.0
19 TraesCS3D01G527800 chr3A 92.600 473 19 2 3258 3730 738131579 738132035 0.000000e+00 665.0
20 TraesCS3D01G527800 chr3A 88.324 531 25 17 5512 6034 738133720 738134221 2.410000e-168 603.0
21 TraesCS3D01G527800 chr3A 91.211 421 26 6 1 421 738128462 738128871 4.080000e-156 562.0
22 TraesCS3D01G527800 chr3A 85.748 421 57 2 1 421 738109475 738109892 5.550000e-120 442.0
23 TraesCS3D01G527800 chr3A 90.099 303 26 3 2216 2515 738130370 738130671 2.040000e-104 390.0
24 TraesCS3D01G527800 chr3A 89.147 258 21 3 627 884 738129083 738129333 1.260000e-81 315.0
25 TraesCS3D01G527800 chr3A 88.068 176 17 2 425 596 738128914 738129089 7.930000e-49 206.0
26 TraesCS3D01G527800 chr3A 95.349 86 3 1 3979 4063 738132026 738132111 1.060000e-27 135.0
27 TraesCS3D01G527800 chr3A 94.737 76 4 0 1141 1216 11612772 11612697 1.060000e-22 119.0
28 TraesCS3D01G527800 chr3A 94.000 50 3 0 320 369 737944995 737944946 6.490000e-10 76.8
29 TraesCS3D01G527800 chr6A 86.466 266 26 9 4062 4322 97350243 97350503 3.560000e-72 283.0
30 TraesCS3D01G527800 chr6A 92.233 103 6 2 3728 3829 431328756 431328857 1.750000e-30 145.0
31 TraesCS3D01G527800 chr6A 92.233 103 6 2 3728 3829 431366428 431366529 1.750000e-30 145.0
32 TraesCS3D01G527800 chr6A 86.842 114 11 4 3703 3815 315819862 315819752 2.280000e-24 124.0
33 TraesCS3D01G527800 chr1D 84.266 286 15 11 3731 3986 307007249 307006964 1.000000e-62 252.0
34 TraesCS3D01G527800 chr1D 97.842 139 1 2 3850 3986 128385060 128384922 7.820000e-59 239.0
35 TraesCS3D01G527800 chr1D 94.737 76 4 0 1141 1216 164361072 164361147 1.060000e-22 119.0
36 TraesCS3D01G527800 chr1D 94.667 75 4 0 1141 1215 437569085 437569011 3.820000e-22 117.0
37 TraesCS3D01G527800 chr1D 89.189 74 8 0 1143 1216 16291896 16291969 6.440000e-15 93.5
38 TraesCS3D01G527800 chr7B 83.984 256 35 6 4063 4315 211422777 211423029 2.170000e-59 241.0
39 TraesCS3D01G527800 chr7A 95.364 151 4 3 3838 3986 334132404 334132553 2.810000e-58 237.0
40 TraesCS3D01G527800 chr7A 92.754 138 8 2 3850 3986 305784986 305785122 1.330000e-46 198.0
41 TraesCS3D01G527800 chr7A 84.397 141 20 2 5451 5589 50024781 50024921 2.930000e-28 137.0
42 TraesCS3D01G527800 chr6B 83.273 275 29 9 4063 4321 479439844 479439571 2.810000e-58 237.0
43 TraesCS3D01G527800 chr6B 94.203 138 7 1 3850 3986 475581831 475581968 6.130000e-50 209.0
44 TraesCS3D01G527800 chr6B 82.166 157 22 4 5452 5605 19141058 19140905 4.910000e-26 130.0
45 TraesCS3D01G527800 chr4A 97.826 138 2 1 3850 3986 438436482 438436619 2.810000e-58 237.0
46 TraesCS3D01G527800 chr4A 94.505 91 4 1 3725 3815 547310299 547310388 8.160000e-29 139.0
47 TraesCS3D01G527800 chr4A 91.837 98 5 3 3719 3815 739322615 739322520 3.790000e-27 134.0
48 TraesCS3D01G527800 chr5D 97.101 138 2 2 3850 3986 43990126 43989990 1.310000e-56 231.0
49 TraesCS3D01G527800 chr5D 96.454 141 3 2 3848 3986 230769901 230769761 1.310000e-56 231.0
50 TraesCS3D01G527800 chr5D 94.776 134 5 2 3854 3986 184428961 184429093 2.200000e-49 207.0
51 TraesCS3D01G527800 chr5D 92.029 138 9 2 3850 3986 225722796 225722660 6.170000e-45 193.0
52 TraesCS3D01G527800 chr5D 82.723 191 17 9 5400 5577 517846749 517846936 8.100000e-34 156.0
53 TraesCS3D01G527800 chr2D 97.101 138 3 1 3850 3986 527006701 527006564 1.310000e-56 231.0
54 TraesCS3D01G527800 chr2D 89.944 179 10 6 3815 3986 182931711 182931888 2.190000e-54 224.0
55 TraesCS3D01G527800 chr2D 79.894 189 32 4 5397 5582 512033231 512033416 3.790000e-27 134.0
56 TraesCS3D01G527800 chr2D 90.541 74 7 0 1143 1216 96100451 96100378 1.380000e-16 99.0
57 TraesCS3D01G527800 chr6D 96.429 140 4 1 3848 3986 362590134 362590273 4.700000e-56 230.0
58 TraesCS3D01G527800 chr6D 97.619 84 2 0 3728 3811 293804497 293804580 1.750000e-30 145.0
59 TraesCS3D01G527800 chr5A 89.944 179 10 6 3815 3986 487790215 487790038 2.190000e-54 224.0
60 TraesCS3D01G527800 chr5A 82.781 151 22 3 5452 5601 531533250 531533103 1.360000e-26 132.0
61 TraesCS3D01G527800 chr5A 79.891 184 29 5 5413 5590 4011643 4011824 1.770000e-25 128.0
62 TraesCS3D01G527800 chr2B 81.022 274 35 10 4063 4321 799534755 799535026 1.030000e-47 202.0
63 TraesCS3D01G527800 chr2B 79.538 303 41 9 5720 6009 726705022 726704728 4.770000e-46 196.0
64 TraesCS3D01G527800 chr2B 79.538 303 41 9 5720 6009 726745911 726745617 4.770000e-46 196.0
65 TraesCS3D01G527800 chr2B 81.905 210 21 11 5400 5597 225571435 225571639 1.740000e-35 161.0
66 TraesCS3D01G527800 chr2B 88.800 125 13 1 4193 4317 13362789 13362912 1.050000e-32 152.0
67 TraesCS3D01G527800 chr2B 90.541 74 7 0 1142 1215 744402461 744402388 1.380000e-16 99.0
68 TraesCS3D01G527800 chr2B 92.857 56 2 1 1141 1196 765198427 765198374 5.010000e-11 80.5
69 TraesCS3D01G527800 chr2B 94.737 38 2 0 5238 5275 303170746 303170709 6.530000e-05 60.2
70 TraesCS3D01G527800 chr5B 85.714 182 19 6 5400 5577 650551843 650552021 1.030000e-42 185.0
71 TraesCS3D01G527800 chr5B 91.250 80 6 1 1138 1216 669731357 669731278 2.300000e-19 108.0
72 TraesCS3D01G527800 chr4D 93.651 126 5 2 3864 3986 437299816 437299691 1.030000e-42 185.0
73 TraesCS3D01G527800 chr4D 94.505 91 4 1 3725 3815 306525694 306525605 8.160000e-29 139.0
74 TraesCS3D01G527800 chr4D 92.105 76 6 0 1141 1216 497503579 497503654 2.300000e-19 108.0
75 TraesCS3D01G527800 chr4B 90.265 113 10 1 3875 3986 180236218 180236106 4.870000e-31 147.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G527800 chr3D 606080850 606086884 6034 True 11145.0 11145 100.000000 1 6035 1 chr3D.!!$R1 6034
1 TraesCS3D01G527800 chr3B 816004250 816009865 5615 False 1016.0 1875 90.022571 1 6034 7 chr3B.!!$F3 6033
2 TraesCS3D01G527800 chr3B 406132994 406133577 583 True 628.0 628 86.288000 1456 2043 1 chr3B.!!$R2 587
3 TraesCS3D01G527800 chr3A 738128462 738134221 5759 False 684.7 1519 90.831600 1 6034 10 chr3A.!!$F2 6033

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
423 466 0.036388 TACTCCTTTGCTTCGCCAGG 60.036 55.0 0.00 0.0 31.52 4.45 F
1383 1484 0.324460 CGAGGACTTCTGGGGGTACT 60.324 60.0 0.00 0.0 0.00 2.73 F
2221 2402 0.168128 CGGTTGTTTGGATCTTCGGC 59.832 55.0 0.00 0.0 0.00 5.54 F
3748 4101 0.413037 AGGGGCCATTTGGATTGTGA 59.587 50.0 4.39 0.0 37.39 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1403 1504 0.682209 TAAACGAGAGAGGGGTCGGG 60.682 60.0 0.0 0.0 40.59 5.14 R
3370 3720 0.037232 GGGCTACACAGTCAGGTCAC 60.037 60.0 0.0 0.0 0.00 3.67 R
4129 4482 0.108963 TTTCCGGTGGGATTTCGTGT 59.891 50.0 0.0 0.0 43.41 4.49 R
5234 5592 0.033894 TATTTTGGAACGGAGGGGGC 60.034 55.0 0.0 0.0 0.00 5.80 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
115 116 5.997746 CGGTCTTGTATATCCAACCATTGAT 59.002 40.000 0.00 0.00 0.00 2.57
134 135 2.254546 TGATCACCTTTGAACACGCT 57.745 45.000 0.00 0.00 34.61 5.07
172 173 4.440103 CGACCTCAAACCTAACGATATTCG 59.560 45.833 0.00 0.00 46.93 3.34
249 250 1.068541 GTCGTCCCAACAAATCCTTGC 60.069 52.381 0.00 0.00 35.84 4.01
270 271 1.811266 CGTCCATGCAGACTTCGGG 60.811 63.158 4.76 0.00 34.46 5.14
295 296 3.126831 CCAAGTCCATAGATTGCGACTC 58.873 50.000 0.00 0.00 35.86 3.36
301 302 2.389059 CATAGATTGCGACTCCAGACG 58.611 52.381 0.00 0.00 36.38 4.18
386 387 1.774639 GGAACGAACAGACTAACGCA 58.225 50.000 0.00 0.00 0.00 5.24
423 466 0.036388 TACTCCTTTGCTTCGCCAGG 60.036 55.000 0.00 0.00 31.52 4.45
428 471 2.754664 CTTTGCTTCGCCAGGGGAGT 62.755 60.000 6.28 0.00 0.00 3.85
522 565 4.758251 CGCGACAGGATGGTGCCA 62.758 66.667 0.00 0.00 43.62 4.92
537 584 1.051008 TGCCATCCTCGATGCAGTAT 58.949 50.000 0.00 0.00 38.59 2.12
556 603 0.819259 TGCATGCTTCCCCTTATCGC 60.819 55.000 20.33 0.00 0.00 4.58
557 604 1.518903 GCATGCTTCCCCTTATCGCC 61.519 60.000 11.37 0.00 0.00 5.54
576 623 1.263356 CGCTCCCCGGATTAAGGATA 58.737 55.000 0.73 0.00 0.00 2.59
588 635 1.868713 TAAGGATAAGCCACGGGTGA 58.131 50.000 0.00 0.00 40.02 4.02
671 727 4.681978 GGTGTTCGCGAGCCTGGT 62.682 66.667 20.56 0.00 0.00 4.00
672 728 3.112709 GTGTTCGCGAGCCTGGTC 61.113 66.667 20.56 2.42 0.00 4.02
697 753 2.968574 ACCAGGCTGAGAATATCGTCAT 59.031 45.455 17.94 0.00 0.00 3.06
752 823 4.809496 CCGGCCCTTGATGCTGCT 62.809 66.667 0.00 0.00 33.66 4.24
755 826 3.834799 GCCCTTGATGCTGCTGCC 61.835 66.667 13.47 0.00 38.71 4.85
756 827 3.515286 CCCTTGATGCTGCTGCCG 61.515 66.667 13.47 0.00 38.71 5.69
757 828 2.749044 CCTTGATGCTGCTGCCGT 60.749 61.111 13.47 1.50 38.71 5.68
758 829 2.758089 CCTTGATGCTGCTGCCGTC 61.758 63.158 13.47 11.45 38.71 4.79
759 830 3.092192 CTTGATGCTGCTGCCGTCG 62.092 63.158 13.47 0.00 38.71 5.12
760 831 3.881952 TTGATGCTGCTGCCGTCGT 62.882 57.895 13.47 0.00 38.71 4.34
761 832 3.558411 GATGCTGCTGCCGTCGTC 61.558 66.667 13.47 0.37 38.71 4.20
765 836 4.406173 CTGCTGCCGTCGTCGTCT 62.406 66.667 0.71 0.00 35.01 4.18
766 837 4.400109 TGCTGCCGTCGTCGTCTC 62.400 66.667 0.71 0.00 35.01 3.36
807 878 1.283321 GGCTCCTCCTCCATCTTTGTT 59.717 52.381 0.00 0.00 0.00 2.83
908 979 8.867112 ATATATTTTAGCGAAGACGAGACAAA 57.133 30.769 0.00 0.00 42.66 2.83
909 980 4.703899 TTTTAGCGAAGACGAGACAAAC 57.296 40.909 0.00 0.00 42.66 2.93
910 981 3.637998 TTAGCGAAGACGAGACAAACT 57.362 42.857 0.00 0.00 42.66 2.66
911 982 4.754372 TTAGCGAAGACGAGACAAACTA 57.246 40.909 0.00 0.00 42.66 2.24
912 983 2.931228 AGCGAAGACGAGACAAACTAC 58.069 47.619 0.00 0.00 42.66 2.73
913 984 2.553172 AGCGAAGACGAGACAAACTACT 59.447 45.455 0.00 0.00 42.66 2.57
914 985 2.909863 GCGAAGACGAGACAAACTACTC 59.090 50.000 0.00 0.00 42.66 2.59
915 986 3.365164 GCGAAGACGAGACAAACTACTCT 60.365 47.826 0.00 0.00 42.66 3.24
920 991 7.794810 CGAAGACGAGACAAACTACTCTATATG 59.205 40.741 0.00 0.00 42.66 1.78
945 1018 4.150994 GGTGACAAACCCAAGCGA 57.849 55.556 0.00 0.00 44.02 4.93
957 1030 1.342555 CCAAGCGAACACGACGATTA 58.657 50.000 0.00 0.00 37.27 1.75
1124 1212 2.508755 GAAAAGCCCGCGACTTTCCG 62.509 60.000 21.90 0.00 36.35 4.30
1383 1484 0.324460 CGAGGACTTCTGGGGGTACT 60.324 60.000 0.00 0.00 0.00 2.73
1395 1496 2.768769 GGTACTGCCTCCCTCCCC 60.769 72.222 0.00 0.00 0.00 4.81
1412 1513 2.933834 CCCTTCAACCCGACCCCT 60.934 66.667 0.00 0.00 0.00 4.79
1456 1564 2.909662 GGATCCTCTCCCCTAAGATTGG 59.090 54.545 3.84 0.00 38.19 3.16
1457 1565 1.807814 TCCTCTCCCCTAAGATTGGC 58.192 55.000 0.00 0.00 0.00 4.52
1458 1566 0.394565 CCTCTCCCCTAAGATTGGCG 59.605 60.000 0.00 0.00 0.00 5.69
1459 1567 1.123928 CTCTCCCCTAAGATTGGCGT 58.876 55.000 0.00 0.00 0.00 5.68
1460 1568 1.069358 CTCTCCCCTAAGATTGGCGTC 59.931 57.143 0.00 0.00 0.00 5.19
1491 1603 2.867647 GCTGGCTGGGTGAAATTTTGTC 60.868 50.000 0.00 0.00 0.00 3.18
1532 1645 0.465460 TTAGTGGATGCGATTGGGGC 60.465 55.000 0.00 0.00 0.00 5.80
1542 1655 1.152881 GATTGGGGCTAGGCAGGTG 60.153 63.158 19.14 0.00 0.00 4.00
1636 1749 0.860457 AAGAGGCCAGGGTTTCCTTT 59.140 50.000 5.01 0.00 42.67 3.11
1655 1768 6.003950 TCCTTTTAGTAGCTTGCAAGTGAAT 58.996 36.000 26.55 16.27 0.00 2.57
1660 1774 4.582869 AGTAGCTTGCAAGTGAATCATCA 58.417 39.130 26.55 0.47 0.00 3.07
1702 1816 2.268298 CGTCTGGGTTTGAGATTACGG 58.732 52.381 0.00 0.00 0.00 4.02
1719 1833 6.672657 AGATTACGGGGAGGCTTATATAACAT 59.327 38.462 0.00 0.00 0.00 2.71
1725 1862 5.246307 GGGAGGCTTATATAACATCACCAC 58.754 45.833 0.00 0.00 0.00 4.16
1794 1933 5.532406 TCTTCAAGCTTGCTACTTGTTGATT 59.468 36.000 21.99 0.00 43.97 2.57
1796 1935 5.065914 TCAAGCTTGCTACTTGTTGATTCT 58.934 37.500 21.99 0.00 43.97 2.40
1851 2000 9.573166 TTACTCTTACCATGATTATTTGATGGG 57.427 33.333 0.00 0.00 40.96 4.00
1852 2001 7.006509 ACTCTTACCATGATTATTTGATGGGG 58.993 38.462 0.00 0.00 40.96 4.96
1857 2006 2.305928 TGATTATTTGATGGGGCACGG 58.694 47.619 0.00 0.00 0.00 4.94
1906 2057 4.911514 TTTTTGTTCTGGTTGTCTAGGC 57.088 40.909 0.00 0.00 0.00 3.93
1919 2070 4.106029 TGTCTAGGCGTACATTGAAGAC 57.894 45.455 0.00 0.00 34.00 3.01
2023 2174 5.356751 TGCTGCTGTTAACCAATAATACCTG 59.643 40.000 2.48 0.00 0.00 4.00
2062 2213 4.084171 CGATCACTCAATCACACATATGGC 60.084 45.833 7.80 0.00 0.00 4.40
2065 2216 3.314357 CACTCAATCACACATATGGCTGG 59.686 47.826 7.80 0.00 0.00 4.85
2066 2217 3.200605 ACTCAATCACACATATGGCTGGA 59.799 43.478 7.80 0.00 0.00 3.86
2104 2255 8.378172 TCGTCATTTTCTTATTTCTCTTGTGT 57.622 30.769 0.00 0.00 0.00 3.72
2106 2257 9.450807 CGTCATTTTCTTATTTCTCTTGTGTTT 57.549 29.630 0.00 0.00 0.00 2.83
2108 2259 9.965824 TCATTTTCTTATTTCTCTTGTGTTTCC 57.034 29.630 0.00 0.00 0.00 3.13
2153 2323 4.891756 AGCATCTATGGAAATGTTGGAAGG 59.108 41.667 0.00 0.00 0.00 3.46
2165 2335 7.335673 GGAAATGTTGGAAGGTTTTTCTGAAAA 59.664 33.333 11.33 11.33 32.53 2.29
2166 2336 8.806429 AAATGTTGGAAGGTTTTTCTGAAAAT 57.194 26.923 15.63 1.67 37.12 1.82
2167 2337 9.898152 AAATGTTGGAAGGTTTTTCTGAAAATA 57.102 25.926 15.63 5.30 37.12 1.40
2168 2338 8.887036 ATGTTGGAAGGTTTTTCTGAAAATAC 57.113 30.769 15.63 14.86 37.12 1.89
2170 2340 8.536175 TGTTGGAAGGTTTTTCTGAAAATACTT 58.464 29.630 21.91 21.91 37.44 2.24
2171 2341 8.817100 GTTGGAAGGTTTTTCTGAAAATACTTG 58.183 33.333 24.58 0.00 36.16 3.16
2172 2342 8.299990 TGGAAGGTTTTTCTGAAAATACTTGA 57.700 30.769 24.58 14.67 36.16 3.02
2173 2343 8.923270 TGGAAGGTTTTTCTGAAAATACTTGAT 58.077 29.630 24.58 10.97 36.16 2.57
2174 2344 9.196552 GGAAGGTTTTTCTGAAAATACTTGATG 57.803 33.333 24.58 0.00 36.16 3.07
2175 2345 9.750125 GAAGGTTTTTCTGAAAATACTTGATGT 57.250 29.630 24.58 10.47 36.16 3.06
2176 2346 9.533253 AAGGTTTTTCTGAAAATACTTGATGTG 57.467 29.630 21.46 0.00 37.12 3.21
2211 2381 3.503891 ACGTTTCTTTTCCGGTTGTTTG 58.496 40.909 0.00 0.00 0.00 2.93
2221 2402 0.168128 CGGTTGTTTGGATCTTCGGC 59.832 55.000 0.00 0.00 0.00 5.54
2227 2408 5.508320 GGTTGTTTGGATCTTCGGCTTTAAA 60.508 40.000 0.00 0.00 0.00 1.52
2228 2409 5.975693 TGTTTGGATCTTCGGCTTTAAAT 57.024 34.783 0.00 0.00 0.00 1.40
2229 2410 6.339587 TGTTTGGATCTTCGGCTTTAAATT 57.660 33.333 0.00 0.00 0.00 1.82
2264 2447 6.483687 ACGTGTAAATTCAGTTGTCTTGAAC 58.516 36.000 0.00 0.00 0.00 3.18
2294 2477 8.997323 CCTATTGCTTCTAACAATGAAGGATAG 58.003 37.037 0.00 0.00 40.53 2.08
2302 2485 4.696479 ACAATGAAGGATAGCCGAAGAT 57.304 40.909 0.00 0.00 39.96 2.40
2330 2514 5.045286 AGTTAGATTCCCTGCAAGACATTCT 60.045 40.000 0.00 0.00 34.07 2.40
2342 2526 7.094463 CCTGCAAGACATTCTTCTTAAGTTGAT 60.094 37.037 1.63 0.00 33.78 2.57
2374 2558 9.680315 ACGCACTCATAAGTTATTTCTAGATAC 57.320 33.333 0.00 0.00 31.71 2.24
2605 2871 2.829720 AGCATGCCATGTTCACTGATTT 59.170 40.909 15.66 0.00 0.00 2.17
2643 2909 3.374988 GCTGCTGAATAGTGTGTATTGCA 59.625 43.478 0.00 0.00 0.00 4.08
2665 2931 5.352569 GCATGACACTGTAGCTTGTCTTAAT 59.647 40.000 15.41 1.06 42.31 1.40
2694 2960 7.526142 TCACCAGATTATCTACCATACTCAC 57.474 40.000 0.00 0.00 0.00 3.51
2747 3013 5.352569 TGCTACTAGCTTGCTTCAGAAATTC 59.647 40.000 9.49 0.00 42.97 2.17
2749 3015 3.686726 ACTAGCTTGCTTCAGAAATTCGG 59.313 43.478 0.00 0.00 0.00 4.30
2755 3021 4.355543 TGCTTCAGAAATTCGGTTATGC 57.644 40.909 0.00 0.00 0.00 3.14
2800 3066 5.910723 GCATTTCCATTTGTTTTTGAGCTTG 59.089 36.000 0.00 0.00 0.00 4.01
2803 3069 3.870419 TCCATTTGTTTTTGAGCTTGTGC 59.130 39.130 0.00 0.00 40.05 4.57
2824 3090 7.960262 TGTGCTCTCATCTGTTGATATATTCT 58.040 34.615 0.00 0.00 32.72 2.40
2922 3189 3.365364 CCGACTTCCATTGCTTCAAGAAC 60.365 47.826 0.00 0.00 0.00 3.01
2934 3201 3.254166 GCTTCAAGAACAAGATTGAGCCA 59.746 43.478 0.00 0.00 36.81 4.75
2982 3249 0.663153 GCGGTAAATGGACCATCAGC 59.337 55.000 7.63 7.71 39.72 4.26
3030 3297 5.435686 TCTGGTTGCATACTGTAAGGATT 57.564 39.130 0.00 0.00 27.86 3.01
3147 3414 5.128499 TGGTGAACAATTTGACTTTGGTGAT 59.872 36.000 2.79 0.00 0.00 3.06
3207 3474 4.038642 CAGGAAAGAGTAGCTATCTGGACC 59.961 50.000 0.00 6.21 0.00 4.46
3243 3510 6.226052 CAATGAAGCTGCTCAGGTATGTATA 58.774 40.000 1.00 0.00 38.35 1.47
3287 3637 3.118847 TGTTCTTTGATTGCAGGCAACAA 60.119 39.130 9.13 12.16 38.88 2.83
3288 3638 4.060205 GTTCTTTGATTGCAGGCAACAAT 58.940 39.130 9.13 4.87 40.37 2.71
3296 3646 2.794103 TGCAGGCAACAATCATGTAGT 58.206 42.857 0.00 0.00 39.40 2.73
3297 3647 3.156293 TGCAGGCAACAATCATGTAGTT 58.844 40.909 0.00 0.00 39.40 2.24
3298 3648 3.573538 TGCAGGCAACAATCATGTAGTTT 59.426 39.130 0.00 0.00 39.40 2.66
3299 3649 4.764308 TGCAGGCAACAATCATGTAGTTTA 59.236 37.500 0.00 0.00 39.40 2.01
3300 3650 5.095490 GCAGGCAACAATCATGTAGTTTAC 58.905 41.667 0.00 0.00 39.40 2.01
3301 3651 5.335583 GCAGGCAACAATCATGTAGTTTACA 60.336 40.000 0.00 0.00 39.40 2.41
3302 3652 6.676950 CAGGCAACAATCATGTAGTTTACAA 58.323 36.000 0.00 0.00 39.40 2.41
3303 3653 6.582295 CAGGCAACAATCATGTAGTTTACAAC 59.418 38.462 0.00 0.00 39.40 3.32
3304 3654 6.264292 AGGCAACAATCATGTAGTTTACAACA 59.736 34.615 0.00 0.00 39.40 3.33
3305 3655 7.039784 AGGCAACAATCATGTAGTTTACAACAT 60.040 33.333 0.00 0.00 39.40 2.71
3306 3656 7.273381 GGCAACAATCATGTAGTTTACAACATC 59.727 37.037 0.00 0.00 42.76 3.06
3307 3657 7.007367 GCAACAATCATGTAGTTTACAACATCG 59.993 37.037 0.00 0.00 42.76 3.84
3308 3658 7.667043 ACAATCATGTAGTTTACAACATCGT 57.333 32.000 0.00 0.00 42.76 3.73
3309 3659 8.766000 ACAATCATGTAGTTTACAACATCGTA 57.234 30.769 0.00 0.00 42.76 3.43
3310 3660 9.210329 ACAATCATGTAGTTTACAACATCGTAA 57.790 29.630 0.00 0.00 42.76 3.18
3324 3674 7.507304 ACAACATCGTAATTTAAACTGTCTCG 58.493 34.615 0.00 0.00 0.00 4.04
3357 3707 8.301720 AGCATGCATAATAATATTGTGACCTTG 58.698 33.333 21.98 6.46 0.00 3.61
3358 3708 7.062605 GCATGCATAATAATATTGTGACCTTGC 59.937 37.037 14.21 11.15 0.00 4.01
3359 3709 7.579761 TGCATAATAATATTGTGACCTTGCA 57.420 32.000 12.89 1.04 33.28 4.08
3360 3710 8.180706 TGCATAATAATATTGTGACCTTGCAT 57.819 30.769 12.89 0.00 30.98 3.96
3361 3711 9.294614 TGCATAATAATATTGTGACCTTGCATA 57.705 29.630 12.89 0.00 30.98 3.14
3370 3720 6.757897 TTGTGACCTTGCATATAAAAGGAG 57.242 37.500 18.19 0.00 44.93 3.69
3491 3841 3.814625 TGAAAGGATGTGTGCAGTACAA 58.185 40.909 7.71 0.00 41.89 2.41
3492 3842 4.397420 TGAAAGGATGTGTGCAGTACAAT 58.603 39.130 7.71 0.00 41.89 2.71
3561 3913 6.204108 CCGGTTTACTGTGTTTCTATGTCTTT 59.796 38.462 0.00 0.00 0.00 2.52
3649 4002 6.755141 TGCTACGTAACTCCTAAGCTATTTTG 59.245 38.462 0.00 0.00 0.00 2.44
3682 4035 4.397382 CAACATACGCTCATTTGTCTGTG 58.603 43.478 0.00 0.00 0.00 3.66
3714 4067 7.506114 TCCGGCTATATTTTTATGTCAACTCT 58.494 34.615 0.00 0.00 0.00 3.24
3730 4083 7.639039 TGTCAACTCTTTGTGTAAGCATTTAG 58.361 34.615 0.00 0.00 34.02 1.85
3731 4084 7.078228 GTCAACTCTTTGTGTAAGCATTTAGG 58.922 38.462 0.00 0.00 34.02 2.69
3732 4085 6.206634 TCAACTCTTTGTGTAAGCATTTAGGG 59.793 38.462 0.00 0.00 34.02 3.53
3733 4086 5.010282 ACTCTTTGTGTAAGCATTTAGGGG 58.990 41.667 0.00 0.00 33.66 4.79
3734 4087 3.761752 TCTTTGTGTAAGCATTTAGGGGC 59.238 43.478 0.00 0.00 33.66 5.80
3735 4088 2.137810 TGTGTAAGCATTTAGGGGCC 57.862 50.000 0.00 0.00 0.00 5.80
3736 4089 1.356059 TGTGTAAGCATTTAGGGGCCA 59.644 47.619 4.39 0.00 0.00 5.36
3737 4090 2.024464 TGTGTAAGCATTTAGGGGCCAT 60.024 45.455 4.39 0.00 0.00 4.40
3738 4091 3.031013 GTGTAAGCATTTAGGGGCCATT 58.969 45.455 4.39 0.00 0.00 3.16
3739 4092 3.450817 GTGTAAGCATTTAGGGGCCATTT 59.549 43.478 4.39 0.00 0.00 2.32
3740 4093 3.450457 TGTAAGCATTTAGGGGCCATTTG 59.550 43.478 4.39 0.00 0.00 2.32
3741 4094 1.499368 AGCATTTAGGGGCCATTTGG 58.501 50.000 4.39 0.00 38.53 3.28
3742 4095 1.008206 AGCATTTAGGGGCCATTTGGA 59.992 47.619 4.39 0.00 37.39 3.53
3743 4096 2.049372 GCATTTAGGGGCCATTTGGAT 58.951 47.619 4.39 0.00 37.39 3.41
3744 4097 2.439135 GCATTTAGGGGCCATTTGGATT 59.561 45.455 4.39 0.00 37.39 3.01
3745 4098 3.745163 GCATTTAGGGGCCATTTGGATTG 60.745 47.826 4.39 0.00 37.39 2.67
3746 4099 2.938428 TTAGGGGCCATTTGGATTGT 57.062 45.000 4.39 0.00 37.39 2.71
3747 4100 2.157640 TAGGGGCCATTTGGATTGTG 57.842 50.000 4.39 0.00 37.39 3.33
3748 4101 0.413037 AGGGGCCATTTGGATTGTGA 59.587 50.000 4.39 0.00 37.39 3.58
3749 4102 0.536724 GGGGCCATTTGGATTGTGAC 59.463 55.000 4.39 0.00 37.39 3.67
3750 4103 1.560505 GGGCCATTTGGATTGTGACT 58.439 50.000 4.39 0.00 37.39 3.41
3751 4104 2.622977 GGGGCCATTTGGATTGTGACTA 60.623 50.000 4.39 0.00 37.39 2.59
3752 4105 3.299503 GGGCCATTTGGATTGTGACTAT 58.700 45.455 4.39 0.00 37.39 2.12
3753 4106 3.068590 GGGCCATTTGGATTGTGACTATG 59.931 47.826 4.39 0.00 37.39 2.23
3754 4107 3.701040 GGCCATTTGGATTGTGACTATGT 59.299 43.478 0.00 0.00 37.39 2.29
3755 4108 4.160252 GGCCATTTGGATTGTGACTATGTT 59.840 41.667 0.00 0.00 37.39 2.71
3756 4109 5.337491 GGCCATTTGGATTGTGACTATGTTT 60.337 40.000 0.00 0.00 37.39 2.83
3757 4110 5.577945 GCCATTTGGATTGTGACTATGTTTG 59.422 40.000 0.00 0.00 37.39 2.93
3758 4111 5.577945 CCATTTGGATTGTGACTATGTTTGC 59.422 40.000 0.00 0.00 37.39 3.68
3759 4112 4.782019 TTGGATTGTGACTATGTTTGCC 57.218 40.909 0.00 0.00 0.00 4.52
3760 4113 4.032960 TGGATTGTGACTATGTTTGCCT 57.967 40.909 0.00 0.00 0.00 4.75
3761 4114 4.406456 TGGATTGTGACTATGTTTGCCTT 58.594 39.130 0.00 0.00 0.00 4.35
3762 4115 5.565509 TGGATTGTGACTATGTTTGCCTTA 58.434 37.500 0.00 0.00 0.00 2.69
3763 4116 6.186957 TGGATTGTGACTATGTTTGCCTTAT 58.813 36.000 0.00 0.00 0.00 1.73
3764 4117 7.342581 TGGATTGTGACTATGTTTGCCTTATA 58.657 34.615 0.00 0.00 0.00 0.98
3765 4118 7.998383 TGGATTGTGACTATGTTTGCCTTATAT 59.002 33.333 0.00 0.00 0.00 0.86
3766 4119 8.850156 GGATTGTGACTATGTTTGCCTTATATT 58.150 33.333 0.00 0.00 0.00 1.28
3767 4120 9.669353 GATTGTGACTATGTTTGCCTTATATTG 57.331 33.333 0.00 0.00 0.00 1.90
3768 4121 7.026631 TGTGACTATGTTTGCCTTATATTGC 57.973 36.000 0.00 0.00 0.00 3.56
3769 4122 6.039270 TGTGACTATGTTTGCCTTATATTGCC 59.961 38.462 0.00 0.00 0.00 4.52
3770 4123 6.039270 GTGACTATGTTTGCCTTATATTGCCA 59.961 38.462 0.00 0.00 0.00 4.92
3771 4124 6.039270 TGACTATGTTTGCCTTATATTGCCAC 59.961 38.462 0.00 0.00 0.00 5.01
3772 4125 5.890985 ACTATGTTTGCCTTATATTGCCACA 59.109 36.000 0.00 0.00 0.00 4.17
3773 4126 5.874897 ATGTTTGCCTTATATTGCCACAT 57.125 34.783 0.00 0.00 0.00 3.21
3774 4127 5.674052 TGTTTGCCTTATATTGCCACATT 57.326 34.783 0.00 0.00 0.00 2.71
3775 4128 6.782082 TGTTTGCCTTATATTGCCACATTA 57.218 33.333 0.00 0.00 0.00 1.90
3776 4129 7.358770 TGTTTGCCTTATATTGCCACATTAT 57.641 32.000 0.00 0.00 0.00 1.28
3777 4130 7.790027 TGTTTGCCTTATATTGCCACATTATT 58.210 30.769 0.00 0.00 0.00 1.40
3778 4131 8.263640 TGTTTGCCTTATATTGCCACATTATTT 58.736 29.630 0.00 0.00 0.00 1.40
3779 4132 9.108284 GTTTGCCTTATATTGCCACATTATTTT 57.892 29.630 0.00 0.00 0.00 1.82
3780 4133 9.678260 TTTGCCTTATATTGCCACATTATTTTT 57.322 25.926 0.00 0.00 0.00 1.94
3781 4134 8.659925 TGCCTTATATTGCCACATTATTTTTG 57.340 30.769 0.00 0.00 0.00 2.44
3782 4135 7.226325 TGCCTTATATTGCCACATTATTTTTGC 59.774 33.333 0.00 0.00 0.00 3.68
3783 4136 7.307930 GCCTTATATTGCCACATTATTTTTGCC 60.308 37.037 0.00 0.00 0.00 4.52
3784 4137 7.714377 CCTTATATTGCCACATTATTTTTGCCA 59.286 33.333 0.00 0.00 0.00 4.92
3785 4138 6.923928 ATATTGCCACATTATTTTTGCCAC 57.076 33.333 0.00 0.00 0.00 5.01
3786 4139 3.758755 TGCCACATTATTTTTGCCACA 57.241 38.095 0.00 0.00 0.00 4.17
3787 4140 3.397482 TGCCACATTATTTTTGCCACAC 58.603 40.909 0.00 0.00 0.00 3.82
3788 4141 3.070734 TGCCACATTATTTTTGCCACACT 59.929 39.130 0.00 0.00 0.00 3.55
3789 4142 4.064388 GCCACATTATTTTTGCCACACTT 58.936 39.130 0.00 0.00 0.00 3.16
3790 4143 4.083908 GCCACATTATTTTTGCCACACTTG 60.084 41.667 0.00 0.00 0.00 3.16
3791 4144 4.083908 CCACATTATTTTTGCCACACTTGC 60.084 41.667 0.00 0.00 0.00 4.01
3792 4145 4.064388 ACATTATTTTTGCCACACTTGCC 58.936 39.130 0.00 0.00 0.00 4.52
3793 4146 4.202346 ACATTATTTTTGCCACACTTGCCT 60.202 37.500 0.00 0.00 0.00 4.75
3794 4147 5.011533 ACATTATTTTTGCCACACTTGCCTA 59.988 36.000 0.00 0.00 0.00 3.93
3795 4148 5.537300 TTATTTTTGCCACACTTGCCTAA 57.463 34.783 0.00 0.00 0.00 2.69
3796 4149 2.880963 TTTTGCCACACTTGCCTAAC 57.119 45.000 0.00 0.00 0.00 2.34
3797 4150 2.065899 TTTGCCACACTTGCCTAACT 57.934 45.000 0.00 0.00 0.00 2.24
3798 4151 2.065899 TTGCCACACTTGCCTAACTT 57.934 45.000 0.00 0.00 0.00 2.66
3799 4152 1.317613 TGCCACACTTGCCTAACTTG 58.682 50.000 0.00 0.00 0.00 3.16
3800 4153 1.133945 TGCCACACTTGCCTAACTTGA 60.134 47.619 0.00 0.00 0.00 3.02
3801 4154 1.537202 GCCACACTTGCCTAACTTGAG 59.463 52.381 0.00 0.00 0.00 3.02
3802 4155 2.851195 CCACACTTGCCTAACTTGAGT 58.149 47.619 0.00 0.00 0.00 3.41
3803 4156 3.214328 CCACACTTGCCTAACTTGAGTT 58.786 45.455 1.60 1.60 41.73 3.01
3804 4157 3.003689 CCACACTTGCCTAACTTGAGTTG 59.996 47.826 6.64 0.00 38.90 3.16
3805 4158 2.618709 ACACTTGCCTAACTTGAGTTGC 59.381 45.455 6.64 3.38 38.90 4.17
3806 4159 2.880890 CACTTGCCTAACTTGAGTTGCT 59.119 45.455 6.64 0.00 38.90 3.91
3807 4160 3.058639 CACTTGCCTAACTTGAGTTGCTC 60.059 47.826 6.64 0.00 38.90 4.26
3808 4161 2.928801 TGCCTAACTTGAGTTGCTCA 57.071 45.000 6.64 0.00 38.87 4.26
3809 4162 3.207265 TGCCTAACTTGAGTTGCTCAA 57.793 42.857 10.61 10.61 46.50 3.02
3817 4170 3.749665 TTGAGTTGCTCAAAATTGGGG 57.250 42.857 8.89 0.00 45.84 4.96
3818 4171 1.344114 TGAGTTGCTCAAAATTGGGGC 59.656 47.619 0.00 0.00 37.57 5.80
3819 4172 1.620323 GAGTTGCTCAAAATTGGGGCT 59.380 47.619 0.00 0.00 0.00 5.19
3820 4173 1.345415 AGTTGCTCAAAATTGGGGCTG 59.655 47.619 0.00 0.00 0.00 4.85
3821 4174 1.070601 GTTGCTCAAAATTGGGGCTGT 59.929 47.619 0.00 0.00 0.00 4.40
3822 4175 1.422531 TGCTCAAAATTGGGGCTGTT 58.577 45.000 0.00 0.00 0.00 3.16
3823 4176 1.767681 TGCTCAAAATTGGGGCTGTTT 59.232 42.857 0.00 0.00 0.00 2.83
3824 4177 2.145536 GCTCAAAATTGGGGCTGTTTG 58.854 47.619 0.00 0.00 33.26 2.93
3825 4178 2.769893 CTCAAAATTGGGGCTGTTTGG 58.230 47.619 0.00 0.00 32.91 3.28
3826 4179 2.104622 CTCAAAATTGGGGCTGTTTGGT 59.895 45.455 0.00 0.00 32.91 3.67
3827 4180 2.507471 TCAAAATTGGGGCTGTTTGGTT 59.493 40.909 0.00 0.00 32.91 3.67
3828 4181 3.054065 TCAAAATTGGGGCTGTTTGGTTT 60.054 39.130 0.00 0.00 32.91 3.27
3829 4182 2.928801 AATTGGGGCTGTTTGGTTTC 57.071 45.000 0.00 0.00 0.00 2.78
3830 4183 2.101640 ATTGGGGCTGTTTGGTTTCT 57.898 45.000 0.00 0.00 0.00 2.52
3831 4184 2.757894 TTGGGGCTGTTTGGTTTCTA 57.242 45.000 0.00 0.00 0.00 2.10
3832 4185 2.286365 TGGGGCTGTTTGGTTTCTAG 57.714 50.000 0.00 0.00 0.00 2.43
3833 4186 0.888619 GGGGCTGTTTGGTTTCTAGC 59.111 55.000 0.00 0.00 0.00 3.42
3836 4189 2.706555 GCTGTTTGGTTTCTAGCCAC 57.293 50.000 0.00 0.00 35.46 5.01
3837 4190 1.953686 GCTGTTTGGTTTCTAGCCACA 59.046 47.619 0.00 0.00 35.46 4.17
3838 4191 2.558359 GCTGTTTGGTTTCTAGCCACAT 59.442 45.455 0.00 0.00 35.46 3.21
3839 4192 3.756434 GCTGTTTGGTTTCTAGCCACATA 59.244 43.478 0.00 0.00 35.46 2.29
3840 4193 4.399303 GCTGTTTGGTTTCTAGCCACATAT 59.601 41.667 0.00 0.00 35.46 1.78
3841 4194 5.105756 GCTGTTTGGTTTCTAGCCACATATT 60.106 40.000 0.00 0.00 35.46 1.28
3842 4195 6.266168 TGTTTGGTTTCTAGCCACATATTG 57.734 37.500 0.00 0.00 35.46 1.90
3843 4196 4.981806 TTGGTTTCTAGCCACATATTGC 57.018 40.909 0.00 0.00 35.46 3.56
3844 4197 3.287222 TGGTTTCTAGCCACATATTGCC 58.713 45.455 0.00 0.00 0.00 4.52
3845 4198 3.287222 GGTTTCTAGCCACATATTGCCA 58.713 45.455 0.00 0.00 0.00 4.92
3846 4199 3.066760 GGTTTCTAGCCACATATTGCCAC 59.933 47.826 0.00 0.00 0.00 5.01
3847 4200 3.643199 TTCTAGCCACATATTGCCACA 57.357 42.857 0.00 0.00 0.00 4.17
3848 4201 2.917933 TCTAGCCACATATTGCCACAC 58.082 47.619 0.00 0.00 0.00 3.82
3849 4202 2.505407 TCTAGCCACATATTGCCACACT 59.495 45.455 0.00 0.00 0.00 3.55
3850 4203 2.220653 AGCCACATATTGCCACACTT 57.779 45.000 0.00 0.00 0.00 3.16
3851 4204 2.528564 AGCCACATATTGCCACACTTT 58.471 42.857 0.00 0.00 0.00 2.66
3852 4205 2.231964 AGCCACATATTGCCACACTTTG 59.768 45.455 0.00 0.00 0.00 2.77
3853 4206 2.230992 GCCACATATTGCCACACTTTGA 59.769 45.455 0.00 0.00 0.00 2.69
3854 4207 3.836949 CCACATATTGCCACACTTTGAC 58.163 45.455 0.00 0.00 0.00 3.18
3855 4208 3.367292 CCACATATTGCCACACTTTGACC 60.367 47.826 0.00 0.00 0.00 4.02
3856 4209 3.255395 CACATATTGCCACACTTTGACCA 59.745 43.478 0.00 0.00 0.00 4.02
3857 4210 3.894427 ACATATTGCCACACTTTGACCAA 59.106 39.130 0.00 0.00 0.00 3.67
3858 4211 4.022068 ACATATTGCCACACTTTGACCAAG 60.022 41.667 0.00 0.00 38.64 3.61
3860 4213 1.846007 TGCCACACTTTGACCAAGTT 58.154 45.000 0.00 0.00 43.89 2.66
3861 4214 3.006112 TGCCACACTTTGACCAAGTTA 57.994 42.857 0.00 0.00 43.89 2.24
3862 4215 2.948979 TGCCACACTTTGACCAAGTTAG 59.051 45.455 0.00 0.00 43.89 2.34
3863 4216 2.293399 GCCACACTTTGACCAAGTTAGG 59.707 50.000 3.64 3.64 43.89 2.69
3864 4217 3.551846 CCACACTTTGACCAAGTTAGGT 58.448 45.455 0.00 0.00 43.89 3.08
3865 4218 3.315191 CCACACTTTGACCAAGTTAGGTG 59.685 47.826 2.23 0.00 43.89 4.00
3866 4219 3.315191 CACACTTTGACCAAGTTAGGTGG 59.685 47.826 2.23 0.00 43.89 4.61
3867 4220 2.884639 CACTTTGACCAAGTTAGGTGGG 59.115 50.000 2.23 0.00 43.89 4.61
3868 4221 2.512476 ACTTTGACCAAGTTAGGTGGGT 59.488 45.455 2.23 0.00 43.89 4.51
3869 4222 2.649531 TTGACCAAGTTAGGTGGGTG 57.350 50.000 2.23 0.00 43.38 4.61
3870 4223 1.513858 TGACCAAGTTAGGTGGGTGT 58.486 50.000 2.23 0.00 43.38 4.16
3871 4224 1.847737 TGACCAAGTTAGGTGGGTGTT 59.152 47.619 2.23 0.00 43.38 3.32
3872 4225 2.242708 TGACCAAGTTAGGTGGGTGTTT 59.757 45.455 2.23 0.00 43.38 2.83
3873 4226 2.621526 GACCAAGTTAGGTGGGTGTTTG 59.378 50.000 2.23 0.00 43.38 2.93
3874 4227 1.960689 CCAAGTTAGGTGGGTGTTTGG 59.039 52.381 0.00 0.00 32.03 3.28
3875 4228 2.661718 CAAGTTAGGTGGGTGTTTGGT 58.338 47.619 0.00 0.00 0.00 3.67
3876 4229 3.028130 CAAGTTAGGTGGGTGTTTGGTT 58.972 45.455 0.00 0.00 0.00 3.67
3877 4230 2.940158 AGTTAGGTGGGTGTTTGGTTC 58.060 47.619 0.00 0.00 0.00 3.62
3878 4231 2.512476 AGTTAGGTGGGTGTTTGGTTCT 59.488 45.455 0.00 0.00 0.00 3.01
3879 4232 3.717913 AGTTAGGTGGGTGTTTGGTTCTA 59.282 43.478 0.00 0.00 0.00 2.10
3880 4233 2.951229 AGGTGGGTGTTTGGTTCTAG 57.049 50.000 0.00 0.00 0.00 2.43
3881 4234 1.202891 AGGTGGGTGTTTGGTTCTAGC 60.203 52.381 0.00 0.00 0.00 3.42
3882 4235 1.244816 GTGGGTGTTTGGTTCTAGCC 58.755 55.000 0.00 0.00 0.00 3.93
3883 4236 0.847373 TGGGTGTTTGGTTCTAGCCA 59.153 50.000 0.00 0.00 38.28 4.75
3884 4237 1.244816 GGGTGTTTGGTTCTAGCCAC 58.755 55.000 0.00 0.00 38.42 5.01
3885 4238 1.477923 GGGTGTTTGGTTCTAGCCACA 60.478 52.381 0.00 0.00 38.42 4.17
3886 4239 1.607148 GGTGTTTGGTTCTAGCCACAC 59.393 52.381 0.16 0.16 39.10 3.82
3887 4240 1.607148 GTGTTTGGTTCTAGCCACACC 59.393 52.381 3.97 0.00 38.17 4.16
3888 4241 1.493022 TGTTTGGTTCTAGCCACACCT 59.507 47.619 3.97 0.00 38.17 4.00
3889 4242 2.706723 TGTTTGGTTCTAGCCACACCTA 59.293 45.455 3.97 0.00 38.17 3.08
3890 4243 3.136809 TGTTTGGTTCTAGCCACACCTAA 59.863 43.478 3.97 0.22 38.17 2.69
3891 4244 3.695830 TTGGTTCTAGCCACACCTAAG 57.304 47.619 0.00 0.00 38.42 2.18
3892 4245 1.906574 TGGTTCTAGCCACACCTAAGG 59.093 52.381 0.00 0.00 32.81 2.69
3902 4255 4.871933 CCACACCTAAGGCAAGAATTTT 57.128 40.909 0.00 0.00 0.00 1.82
3903 4256 5.213891 CCACACCTAAGGCAAGAATTTTT 57.786 39.130 0.00 0.00 0.00 1.94
3922 4275 3.517296 TTTTATGAGCAGTGAACCCCA 57.483 42.857 0.00 0.00 0.00 4.96
3923 4276 3.737559 TTTATGAGCAGTGAACCCCAT 57.262 42.857 0.00 0.00 0.00 4.00
3924 4277 4.853468 TTTATGAGCAGTGAACCCCATA 57.147 40.909 0.00 0.00 0.00 2.74
3925 4278 5.387113 TTTATGAGCAGTGAACCCCATAT 57.613 39.130 0.00 0.00 0.00 1.78
3926 4279 2.715749 TGAGCAGTGAACCCCATATG 57.284 50.000 0.00 0.00 0.00 1.78
3927 4280 1.915489 TGAGCAGTGAACCCCATATGT 59.085 47.619 1.24 0.00 0.00 2.29
3928 4281 2.092968 TGAGCAGTGAACCCCATATGTC 60.093 50.000 1.24 0.00 0.00 3.06
3929 4282 1.915489 AGCAGTGAACCCCATATGTCA 59.085 47.619 1.24 0.00 0.00 3.58
3930 4283 2.511218 AGCAGTGAACCCCATATGTCAT 59.489 45.455 1.24 0.00 0.00 3.06
3931 4284 3.716353 AGCAGTGAACCCCATATGTCATA 59.284 43.478 1.24 0.00 0.00 2.15
3932 4285 4.067896 GCAGTGAACCCCATATGTCATAG 58.932 47.826 1.24 0.00 0.00 2.23
3933 4286 4.202357 GCAGTGAACCCCATATGTCATAGA 60.202 45.833 1.24 0.00 0.00 1.98
3934 4287 5.300752 CAGTGAACCCCATATGTCATAGAC 58.699 45.833 1.24 0.00 0.00 2.59
3935 4288 4.968719 AGTGAACCCCATATGTCATAGACA 59.031 41.667 1.95 1.95 46.90 3.41
3936 4289 5.057149 GTGAACCCCATATGTCATAGACAC 58.943 45.833 1.43 0.46 45.65 3.67
3937 4290 4.719273 TGAACCCCATATGTCATAGACACA 59.281 41.667 1.43 0.00 45.65 3.72
3938 4291 5.190726 TGAACCCCATATGTCATAGACACAA 59.809 40.000 1.43 0.00 45.65 3.33
3939 4292 5.708736 ACCCCATATGTCATAGACACAAA 57.291 39.130 1.43 0.00 45.65 2.83
3940 4293 6.073447 ACCCCATATGTCATAGACACAAAA 57.927 37.500 1.43 0.00 45.65 2.44
3941 4294 6.489603 ACCCCATATGTCATAGACACAAAAA 58.510 36.000 1.43 0.00 45.65 1.94
3942 4295 6.603201 ACCCCATATGTCATAGACACAAAAAG 59.397 38.462 1.43 0.00 45.65 2.27
3943 4296 6.603201 CCCCATATGTCATAGACACAAAAAGT 59.397 38.462 1.43 0.00 45.65 2.66
3956 4309 3.540617 ACAAAAAGTGTGGCAAATTCCC 58.459 40.909 0.00 0.00 39.72 3.97
3957 4310 3.199727 ACAAAAAGTGTGGCAAATTCCCT 59.800 39.130 0.00 0.00 39.72 4.20
3958 4311 4.198530 CAAAAAGTGTGGCAAATTCCCTT 58.801 39.130 0.00 0.00 0.00 3.95
3959 4312 5.104735 ACAAAAAGTGTGGCAAATTCCCTTA 60.105 36.000 0.00 0.00 39.72 2.69
3960 4313 4.871933 AAAGTGTGGCAAATTCCCTTAG 57.128 40.909 0.00 0.00 0.00 2.18
3961 4314 2.807676 AGTGTGGCAAATTCCCTTAGG 58.192 47.619 0.00 0.00 0.00 2.69
3962 4315 1.204704 GTGTGGCAAATTCCCTTAGGC 59.795 52.381 0.00 0.00 0.00 3.93
3963 4316 1.203112 TGTGGCAAATTCCCTTAGGCA 60.203 47.619 0.00 0.00 0.00 4.75
3964 4317 1.899142 GTGGCAAATTCCCTTAGGCAA 59.101 47.619 0.00 0.00 36.50 4.52
3965 4318 2.094026 GTGGCAAATTCCCTTAGGCAAG 60.094 50.000 0.00 0.00 36.50 4.01
3966 4319 1.134699 GGCAAATTCCCTTAGGCAAGC 60.135 52.381 0.00 0.00 0.00 4.01
3967 4320 1.134699 GCAAATTCCCTTAGGCAAGCC 60.135 52.381 2.02 2.02 0.00 4.35
3968 4321 2.178580 CAAATTCCCTTAGGCAAGCCA 58.821 47.619 14.40 0.00 38.92 4.75
3969 4322 2.566724 CAAATTCCCTTAGGCAAGCCAA 59.433 45.455 14.40 4.98 38.92 4.52
3970 4323 2.621556 ATTCCCTTAGGCAAGCCAAA 57.378 45.000 14.40 0.00 38.92 3.28
3971 4324 1.923356 TTCCCTTAGGCAAGCCAAAG 58.077 50.000 14.40 0.00 38.92 2.77
3972 4325 0.777446 TCCCTTAGGCAAGCCAAAGT 59.223 50.000 14.40 0.00 38.92 2.66
3973 4326 0.890683 CCCTTAGGCAAGCCAAAGTG 59.109 55.000 14.40 0.00 38.92 3.16
3974 4327 1.620822 CCTTAGGCAAGCCAAAGTGT 58.379 50.000 14.40 0.00 38.92 3.55
3975 4328 1.270550 CCTTAGGCAAGCCAAAGTGTG 59.729 52.381 14.40 0.00 38.92 3.82
4054 4407 9.965902 AAAGTGTGATACATTTAGGAGATCTTT 57.034 29.630 0.00 0.00 27.56 2.52
4106 4459 5.933187 TTTGCTTTCTGCGTGTATTAAGA 57.067 34.783 0.00 0.00 46.63 2.10
4107 4460 6.494893 TTTGCTTTCTGCGTGTATTAAGAT 57.505 33.333 0.00 0.00 46.63 2.40
4128 4481 1.134907 ACAGTTGTATCTTACCGGCCG 60.135 52.381 21.04 21.04 0.00 6.13
4129 4482 1.135527 CAGTTGTATCTTACCGGCCGA 59.864 52.381 30.73 6.25 0.00 5.54
4132 4485 0.457035 TGTATCTTACCGGCCGACAC 59.543 55.000 30.73 5.87 0.00 3.67
4231 4585 1.588674 CTGCACCTAAACGACCAACA 58.411 50.000 0.00 0.00 0.00 3.33
4268 4623 2.352715 GCTGGAGGGAAAAACAATTCGG 60.353 50.000 0.00 0.00 0.00 4.30
4281 4636 4.870221 ACAATTCGGAGCCGTATTTTAC 57.130 40.909 10.47 0.00 37.33 2.01
4295 4650 0.389757 TTTTACGCTGGTTTTGGCCC 59.610 50.000 0.00 0.00 0.00 5.80
4499 4854 8.061920 CCTGGGTAGATTATATCACCTATCTCA 58.938 40.741 0.00 0.00 33.66 3.27
4538 4893 3.320256 GGTGAGGGAGTACTATTAACGGG 59.680 52.174 0.00 0.00 0.00 5.28
4543 4898 6.013466 TGAGGGAGTACTATTAACGGGTTTTT 60.013 38.462 0.00 0.00 0.00 1.94
4589 4944 7.205992 ACATGAGCATATGTACTGTCTAGTTG 58.794 38.462 0.00 0.00 39.40 3.16
4617 4972 4.858850 TGTATCATTTCCAGCCAATCAGT 58.141 39.130 0.00 0.00 0.00 3.41
4634 4989 8.296713 GCCAATCAGTGTTTATTAGTTTCTGAA 58.703 33.333 0.00 0.00 34.84 3.02
4765 5120 2.416431 GCCTGGATTGCATTGTGTCTTC 60.416 50.000 0.00 0.00 0.00 2.87
4774 5129 2.138320 CATTGTGTCTTCGCTGTCACT 58.862 47.619 0.00 0.00 0.00 3.41
4912 5267 0.327000 AGGCCTGCCTACTCTTGGAT 60.327 55.000 9.42 0.00 46.14 3.41
4975 5330 4.637534 GCTGATGCTGTTTTCTGAAGGATA 59.362 41.667 0.00 0.00 36.03 2.59
5064 5419 8.879759 CGTTGTACTCCATAAGTCACATTTTAT 58.120 33.333 0.00 0.00 39.55 1.40
5119 5477 0.657312 TCGTTTGAGCTGCAGTGTTG 59.343 50.000 16.64 0.00 0.00 3.33
5120 5478 0.317269 CGTTTGAGCTGCAGTGTTGG 60.317 55.000 16.64 0.00 0.00 3.77
5224 5582 5.505780 TGTTATGGTTGGAATTACAGAGGG 58.494 41.667 0.00 0.00 0.00 4.30
5229 5587 3.010420 GTTGGAATTACAGAGGGTCAGC 58.990 50.000 0.00 0.00 0.00 4.26
5234 5592 3.834489 ATTACAGAGGGTCAGCTCATG 57.166 47.619 0.00 0.00 0.00 3.07
5236 5594 1.153208 CAGAGGGTCAGCTCATGCC 60.153 63.158 0.00 0.00 40.80 4.40
5247 5605 3.406595 CTCATGCCCCCTCCGTTCC 62.407 68.421 0.00 0.00 0.00 3.62
5261 5619 3.178865 TCCGTTCCAAAATACTCCCTCT 58.821 45.455 0.00 0.00 0.00 3.69
5262 5620 3.055385 TCCGTTCCAAAATACTCCCTCTG 60.055 47.826 0.00 0.00 0.00 3.35
5276 5634 2.024273 TCCCTCTGTCCGGAATTACTCT 60.024 50.000 5.23 0.00 0.00 3.24
5363 5725 9.820229 GTTTTTGATACATCTATTTTCACGACA 57.180 29.630 0.00 0.00 0.00 4.35
5367 5729 9.863845 TTGATACATCTATTTTCACGACAAGTA 57.136 29.630 0.00 0.00 0.00 2.24
5368 5730 9.863845 TGATACATCTATTTTCACGACAAGTAA 57.136 29.630 0.00 0.00 0.00 2.24
5376 5738 6.480524 TTTTCACGACAAGTAATCCAGATG 57.519 37.500 0.00 0.00 0.00 2.90
5455 5828 9.784531 ACATCTCCAGTACCAAATTTATATCAG 57.215 33.333 0.00 0.00 0.00 2.90
5565 6363 8.524870 ACTTGCATGAAAATTGATACACTTTC 57.475 30.769 6.60 0.00 0.00 2.62
5566 6364 8.362639 ACTTGCATGAAAATTGATACACTTTCT 58.637 29.630 6.60 0.00 0.00 2.52
5582 6380 7.989416 ACACTTTCTATATTTTGGAACGGAA 57.011 32.000 0.00 0.00 0.00 4.30
5609 6407 8.037758 AGAGTATGTCACAAGAAATTACAGAGG 58.962 37.037 0.00 0.00 0.00 3.69
5648 6448 2.305343 AGAGGACAGCTCAAATGAAGCT 59.695 45.455 0.00 0.00 39.79 3.74
5652 6452 3.119919 GGACAGCTCAAATGAAGCTTCAG 60.120 47.826 31.14 19.37 41.08 3.02
5683 6487 0.605589 GTTGCGGTGCCTTAGAACCT 60.606 55.000 3.29 0.00 34.06 3.50
5704 6508 9.758651 GAACCTCAGTAAATAAAACACCAAATT 57.241 29.630 0.00 0.00 0.00 1.82
5757 6565 3.016031 TCGCTGGCATCATAAACAACAT 58.984 40.909 0.00 0.00 0.00 2.71
5802 6610 4.214545 TGGTAAAAGTGTAAATGGTCAGCG 59.785 41.667 0.00 0.00 0.00 5.18
5806 6616 3.610040 AGTGTAAATGGTCAGCGATGA 57.390 42.857 0.00 0.00 0.00 2.92
5835 6645 0.613260 ATACAAGGTTCTCAGCGGCA 59.387 50.000 1.45 0.00 0.00 5.69
5848 6660 1.153842 GCGGCAGCATAACCAAACC 60.154 57.895 3.18 0.00 44.35 3.27
5904 6717 1.528586 CATGATGCGCCTAGTTACAGC 59.471 52.381 4.18 0.00 0.00 4.40
5920 6733 0.178998 CAGCTCCATATGGCCTTGCT 60.179 55.000 17.58 18.34 34.44 3.91
5928 6741 1.102809 TATGGCCTTGCTGCGGATTG 61.103 55.000 3.32 0.00 0.00 2.67
5929 6742 2.751436 GGCCTTGCTGCGGATTGA 60.751 61.111 0.00 0.00 0.00 2.57
5930 6743 2.123428 GGCCTTGCTGCGGATTGAT 61.123 57.895 0.00 0.00 0.00 2.57
5931 6744 1.669999 GGCCTTGCTGCGGATTGATT 61.670 55.000 0.00 0.00 0.00 2.57
5989 6802 5.841810 TCCATCTGTCAAATGAACAAAACC 58.158 37.500 0.00 0.00 0.00 3.27
6014 6827 7.812191 CCAAAGTTAGCAAAATAGCATGTGTTA 59.188 33.333 0.00 0.00 36.85 2.41
6018 6831 9.173021 AGTTAGCAAAATAGCATGTGTTATGTA 57.827 29.630 0.00 0.00 36.85 2.29
6034 6850 8.749354 TGTGTTATGTATCAACTGTATCTCTGT 58.251 33.333 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 2.440627 AGGTGGCAAGATCATGATAGCA 59.559 45.455 21.61 10.40 0.00 3.49
61 62 0.994247 TTGCAGGGTGATGGTGATCT 59.006 50.000 0.00 0.00 0.00 2.75
115 116 2.254546 AGCGTGTTCAAAGGTGATCA 57.745 45.000 0.00 0.00 32.48 2.92
134 135 4.653868 TGAGGTCGGCTTAACCAAAAATA 58.346 39.130 5.67 0.00 39.39 1.40
172 173 6.817270 TTATTGCCTCGTATTAGAAACGAC 57.183 37.500 0.00 0.00 43.90 4.34
249 250 2.434884 AAGTCTGCATGGACGCCG 60.435 61.111 0.00 0.00 40.76 6.46
270 271 0.947244 CAATCTATGGACTTGGCCGC 59.053 55.000 0.00 0.00 0.00 6.53
283 284 1.132453 CACGTCTGGAGTCGCAATCTA 59.868 52.381 0.00 0.00 0.00 1.98
372 373 1.623973 GCCCGTGCGTTAGTCTGTTC 61.624 60.000 0.00 0.00 0.00 3.18
386 387 0.746063 TATCATCCGTTTACGCCCGT 59.254 50.000 0.00 0.00 38.18 5.28
423 466 1.521681 CGCCATCTCGGAAACTCCC 60.522 63.158 0.00 0.00 36.56 4.30
491 534 1.006220 TCGCGCTTCTGCTTTCTGA 60.006 52.632 5.56 0.00 36.97 3.27
498 541 2.510238 ATCCTGTCGCGCTTCTGC 60.510 61.111 5.56 0.00 0.00 4.26
537 584 0.819259 GCGATAAGGGGAAGCATGCA 60.819 55.000 21.98 0.00 0.00 3.96
556 603 1.481056 ATCCTTAATCCGGGGAGCGG 61.481 60.000 0.00 0.00 32.28 5.52
557 604 1.263356 TATCCTTAATCCGGGGAGCG 58.737 55.000 0.00 0.00 32.28 5.03
576 623 2.590575 CGTGTTCACCCGTGGCTT 60.591 61.111 0.00 0.00 0.00 4.35
604 651 3.820164 GTCGTGCCGCGTCGTTAC 61.820 66.667 4.92 0.00 42.13 2.50
646 702 4.986587 CGCGAACACCGTCGACCA 62.987 66.667 10.58 0.00 43.86 4.02
655 711 2.209064 TAGACCAGGCTCGCGAACAC 62.209 60.000 11.33 2.93 0.00 3.32
671 727 4.075682 CGATATTCTCAGCCTGGTCTAGA 58.924 47.826 0.00 0.00 0.00 2.43
672 728 3.823873 ACGATATTCTCAGCCTGGTCTAG 59.176 47.826 0.00 0.00 0.00 2.43
743 802 4.377708 ACGACGGCAGCAGCATCA 62.378 61.111 2.65 0.00 44.61 3.07
835 906 8.697067 CCGAACAATAAACGATCGATTATTACT 58.303 33.333 30.67 23.40 33.39 2.24
842 913 3.484649 CGACCGAACAATAAACGATCGAT 59.515 43.478 24.34 7.21 44.27 3.59
882 953 9.955208 TTTGTCTCGTCTTCGCTAAAATATATA 57.045 29.630 0.00 0.00 36.96 0.86
883 954 8.753175 GTTTGTCTCGTCTTCGCTAAAATATAT 58.247 33.333 0.00 0.00 36.96 0.86
884 955 7.972277 AGTTTGTCTCGTCTTCGCTAAAATATA 59.028 33.333 0.00 0.00 36.96 0.86
885 956 6.812160 AGTTTGTCTCGTCTTCGCTAAAATAT 59.188 34.615 0.00 0.00 36.96 1.28
886 957 6.154445 AGTTTGTCTCGTCTTCGCTAAAATA 58.846 36.000 0.00 0.00 36.96 1.40
887 958 4.989168 AGTTTGTCTCGTCTTCGCTAAAAT 59.011 37.500 0.00 0.00 36.96 1.82
888 959 4.365723 AGTTTGTCTCGTCTTCGCTAAAA 58.634 39.130 0.00 0.00 36.96 1.52
889 960 3.973657 AGTTTGTCTCGTCTTCGCTAAA 58.026 40.909 0.00 0.00 36.96 1.85
890 961 3.637998 AGTTTGTCTCGTCTTCGCTAA 57.362 42.857 0.00 0.00 36.96 3.09
891 962 3.750130 AGTAGTTTGTCTCGTCTTCGCTA 59.250 43.478 0.00 0.00 36.96 4.26
892 963 2.553172 AGTAGTTTGTCTCGTCTTCGCT 59.447 45.455 0.00 0.00 36.96 4.93
893 964 2.909863 GAGTAGTTTGTCTCGTCTTCGC 59.090 50.000 0.00 0.00 36.96 4.70
894 965 4.407496 AGAGTAGTTTGTCTCGTCTTCG 57.593 45.455 0.00 0.00 36.03 3.79
895 966 8.828644 TCATATAGAGTAGTTTGTCTCGTCTTC 58.171 37.037 0.00 0.00 36.03 2.87
896 967 8.734218 TCATATAGAGTAGTTTGTCTCGTCTT 57.266 34.615 0.00 0.00 36.03 3.01
897 968 8.205512 TCTCATATAGAGTAGTTTGTCTCGTCT 58.794 37.037 0.00 0.00 44.98 4.18
898 969 8.367943 TCTCATATAGAGTAGTTTGTCTCGTC 57.632 38.462 0.00 0.00 44.98 4.20
899 970 8.373048 CTCTCATATAGAGTAGTTTGTCTCGT 57.627 38.462 0.00 0.00 45.85 4.18
912 983 9.542809 GGTTTGTCACCGACCTCTCATATAGAG 62.543 48.148 0.00 0.00 42.97 2.43
913 984 4.432980 TGTCACCGACCTCTCATATAGA 57.567 45.455 0.00 0.00 0.00 1.98
914 985 5.282510 GTTTGTCACCGACCTCTCATATAG 58.717 45.833 0.00 0.00 0.00 1.31
915 986 4.098960 GGTTTGTCACCGACCTCTCATATA 59.901 45.833 0.00 0.00 35.12 0.86
920 991 3.212450 GGTTTGTCACCGACCTCTC 57.788 57.895 0.00 0.00 35.12 3.20
939 1012 1.320555 CCTAATCGTCGTGTTCGCTTG 59.679 52.381 0.00 0.00 36.96 4.01
945 1018 1.200716 TCGAAGCCTAATCGTCGTGTT 59.799 47.619 0.00 0.00 40.99 3.32
1069 1157 4.544689 CGAGGAGAGCAGGCGACG 62.545 72.222 0.00 0.00 0.00 5.12
1102 1190 1.128136 GAAAGTCGCGGGCTTTTCTAC 59.872 52.381 23.03 11.82 36.43 2.59
1395 1496 2.933834 AGGGGTCGGGTTGAAGGG 60.934 66.667 0.00 0.00 0.00 3.95
1398 1499 0.903454 GAGAGAGGGGTCGGGTTGAA 60.903 60.000 0.00 0.00 0.00 2.69
1399 1500 1.305046 GAGAGAGGGGTCGGGTTGA 60.305 63.158 0.00 0.00 0.00 3.18
1400 1501 2.711922 CGAGAGAGGGGTCGGGTTG 61.712 68.421 0.00 0.00 32.40 3.77
1401 1502 2.362632 CGAGAGAGGGGTCGGGTT 60.363 66.667 0.00 0.00 32.40 4.11
1403 1504 0.682209 TAAACGAGAGAGGGGTCGGG 60.682 60.000 0.00 0.00 40.59 5.14
1406 1507 2.159085 CCACATAAACGAGAGAGGGGTC 60.159 54.545 0.00 0.00 0.00 4.46
1407 1508 1.831736 CCACATAAACGAGAGAGGGGT 59.168 52.381 0.00 0.00 0.00 4.95
1408 1509 1.831736 ACCACATAAACGAGAGAGGGG 59.168 52.381 0.00 0.00 0.00 4.79
1409 1510 3.522553 GAACCACATAAACGAGAGAGGG 58.477 50.000 0.00 0.00 0.00 4.30
1412 1513 4.713824 ATCGAACCACATAAACGAGAGA 57.286 40.909 0.00 0.00 36.49 3.10
1491 1603 1.359848 AAACCTAGCACATCGAAGCG 58.640 50.000 0.00 0.00 35.48 4.68
1532 1645 3.498774 AATCAATAGCCACCTGCCTAG 57.501 47.619 0.00 0.00 42.71 3.02
1542 1655 3.179048 GACCAACGCAAAATCAATAGCC 58.821 45.455 0.00 0.00 0.00 3.93
1636 1749 6.172630 TGATGATTCACTTGCAAGCTACTAA 58.827 36.000 26.27 13.10 0.00 2.24
1655 1768 0.865111 CGGACAAAACGCTGTGATGA 59.135 50.000 0.00 0.00 0.00 2.92
1660 1774 2.830285 GCACCGGACAAAACGCTGT 61.830 57.895 9.46 0.00 0.00 4.40
1661 1775 2.051345 GCACCGGACAAAACGCTG 60.051 61.111 9.46 0.00 0.00 5.18
1702 1816 5.246307 GTGGTGATGTTATATAAGCCTCCC 58.754 45.833 0.00 0.00 0.00 4.30
1719 1833 1.338674 CCTGCCTATGAAACGTGGTGA 60.339 52.381 0.00 0.00 0.00 4.02
1725 1862 2.009774 CCACTTCCTGCCTATGAAACG 58.990 52.381 0.00 0.00 0.00 3.60
1825 1965 9.573166 CCCATCAAATAATCATGGTAAGAGTAA 57.427 33.333 0.00 0.00 36.12 2.24
1851 2000 4.084888 GCACTACAACGCCGTGCC 62.085 66.667 0.00 0.00 46.09 5.01
1857 2006 1.073177 AATACACGGCACTACAACGC 58.927 50.000 0.00 0.00 0.00 4.84
1919 2070 9.719355 ACCTACCAAAGCCTAAAATAAAAATTG 57.281 29.630 0.00 0.00 0.00 2.32
2023 2174 7.970384 TGAGTGATCGGTCAACAAATTAATAC 58.030 34.615 0.00 0.00 35.80 1.89
2106 2257 9.227777 GCTACAAAAGTTCCTAAAATAGAAGGA 57.772 33.333 0.00 0.00 40.18 3.36
2107 2258 9.010029 TGCTACAAAAGTTCCTAAAATAGAAGG 57.990 33.333 0.00 0.00 0.00 3.46
2119 2270 7.391148 TTTCCATAGATGCTACAAAAGTTCC 57.609 36.000 0.00 0.00 0.00 3.62
2128 2279 6.016777 CCTTCCAACATTTCCATAGATGCTAC 60.017 42.308 0.00 0.00 0.00 3.58
2153 2323 9.528018 TTCCACATCAAGTATTTTCAGAAAAAC 57.472 29.630 12.38 11.27 37.20 2.43
2165 2335 9.046296 GTAATCTCGAATTTCCACATCAAGTAT 57.954 33.333 0.00 0.00 0.00 2.12
2166 2336 7.222031 CGTAATCTCGAATTTCCACATCAAGTA 59.778 37.037 0.00 0.00 0.00 2.24
2167 2337 6.036083 CGTAATCTCGAATTTCCACATCAAGT 59.964 38.462 0.00 0.00 0.00 3.16
2168 2338 6.036083 ACGTAATCTCGAATTTCCACATCAAG 59.964 38.462 0.00 0.00 34.70 3.02
2170 2340 5.416083 ACGTAATCTCGAATTTCCACATCA 58.584 37.500 0.00 0.00 34.70 3.07
2171 2341 5.968387 ACGTAATCTCGAATTTCCACATC 57.032 39.130 0.00 0.00 34.70 3.06
2172 2342 6.594159 AGAAACGTAATCTCGAATTTCCACAT 59.406 34.615 0.00 0.00 31.14 3.21
2173 2343 5.929992 AGAAACGTAATCTCGAATTTCCACA 59.070 36.000 0.00 0.00 31.14 4.17
2174 2344 6.404712 AGAAACGTAATCTCGAATTTCCAC 57.595 37.500 0.00 0.00 31.14 4.02
2175 2345 7.429636 AAAGAAACGTAATCTCGAATTTCCA 57.570 32.000 4.45 0.00 31.14 3.53
2176 2346 7.480855 GGAAAAGAAACGTAATCTCGAATTTCC 59.519 37.037 19.16 19.16 31.14 3.13
2211 2381 9.750125 AATTATCAAATTTAAAGCCGAAGATCC 57.250 29.630 0.00 0.00 30.98 3.36
2241 2422 6.715464 AGTTCAAGACAACTGAATTTACACG 58.285 36.000 0.00 0.00 35.18 4.49
2264 2447 4.883585 TCATTGTTAGAAGCAATAGGCCAG 59.116 41.667 5.01 0.00 46.50 4.85
2266 2449 5.221126 CCTTCATTGTTAGAAGCAATAGGCC 60.221 44.000 0.00 0.00 46.50 5.19
2294 2477 4.273724 GGGAATCTAACTTCAATCTTCGGC 59.726 45.833 0.00 0.00 0.00 5.54
2302 2485 5.003804 GTCTTGCAGGGAATCTAACTTCAA 58.996 41.667 0.00 0.00 0.00 2.69
2330 2514 4.404507 GCGTCTTGCATCAACTTAAGAA 57.595 40.909 10.09 0.00 45.45 2.52
2393 2577 8.344446 TCTTAGCTGTATGTAACACTAGTTCA 57.656 34.615 0.00 0.00 39.15 3.18
2485 2669 4.966965 AGAGGTGTCAAGTATGAGTACG 57.033 45.455 0.00 0.00 35.88 3.67
2554 2820 6.071952 GGTGGCTGAAAATTTCTCATAGAACA 60.072 38.462 7.29 0.00 33.26 3.18
2600 2866 6.484643 GCAGCTTAATGGACTATCTCAAATCA 59.515 38.462 0.00 0.00 0.00 2.57
2605 2871 4.651045 TCAGCAGCTTAATGGACTATCTCA 59.349 41.667 0.00 0.00 0.00 3.27
2643 2909 6.815641 CAGATTAAGACAAGCTACAGTGTCAT 59.184 38.462 16.51 8.70 45.40 3.06
2685 2951 7.658261 TCCTGAACTATATTTCGTGAGTATGG 58.342 38.462 0.00 0.00 0.00 2.74
2703 2969 4.154918 AGCACGAAAGAAATCATCCTGAAC 59.845 41.667 0.00 0.00 0.00 3.18
2747 3013 8.903570 TTAAATTATCAACACAAGCATAACCG 57.096 30.769 0.00 0.00 0.00 4.44
2782 3048 4.199840 GCACAAGCTCAAAAACAAATGG 57.800 40.909 0.00 0.00 37.91 3.16
2800 3066 8.830201 AAGAATATATCAACAGATGAGAGCAC 57.170 34.615 0.00 0.00 42.53 4.40
2824 3090 9.787435 ATACCACTCAACTTGTTAGACATAAAA 57.213 29.630 0.00 0.00 0.00 1.52
2828 3094 7.936847 TGAAATACCACTCAACTTGTTAGACAT 59.063 33.333 0.00 0.00 0.00 3.06
2910 3177 4.261741 GGCTCAATCTTGTTCTTGAAGCAA 60.262 41.667 0.00 0.00 32.25 3.91
2922 3189 4.221262 TCTTCCCATTTTGGCTCAATCTTG 59.779 41.667 0.00 0.00 35.79 3.02
2982 3249 1.280133 TCAGATTTCCCTCTGCCACAG 59.720 52.381 0.00 0.00 42.00 3.66
3068 3335 4.317530 AAAGGGAATTAGGGTGGAAGTC 57.682 45.455 0.00 0.00 0.00 3.01
3135 3402 5.362143 TCCACAAATTTCATCACCAAAGTCA 59.638 36.000 0.00 0.00 0.00 3.41
3147 3414 2.571212 ACGACTGCTCCACAAATTTCA 58.429 42.857 0.00 0.00 0.00 2.69
3207 3474 3.071479 AGCTTCATTGGCAGCATTTTTG 58.929 40.909 10.29 0.00 38.61 2.44
3298 3648 8.641155 CGAGACAGTTTAAATTACGATGTTGTA 58.359 33.333 0.00 0.00 0.00 2.41
3299 3649 7.359765 CCGAGACAGTTTAAATTACGATGTTGT 60.360 37.037 0.00 0.00 0.00 3.32
3300 3650 6.953743 CCGAGACAGTTTAAATTACGATGTTG 59.046 38.462 0.00 0.00 0.00 3.33
3301 3651 6.869913 TCCGAGACAGTTTAAATTACGATGTT 59.130 34.615 0.00 0.00 0.00 2.71
3302 3652 6.392354 TCCGAGACAGTTTAAATTACGATGT 58.608 36.000 0.00 0.00 0.00 3.06
3303 3653 6.880822 TCCGAGACAGTTTAAATTACGATG 57.119 37.500 0.00 0.00 0.00 3.84
3309 3659 8.958119 TGCTTATATCCGAGACAGTTTAAATT 57.042 30.769 0.00 0.00 0.00 1.82
3310 3660 8.993121 CATGCTTATATCCGAGACAGTTTAAAT 58.007 33.333 0.00 0.00 0.00 1.40
3357 3707 5.525378 CAGTCAGGTCACTCCTTTTATATGC 59.475 44.000 0.00 0.00 45.67 3.14
3358 3708 6.536582 CACAGTCAGGTCACTCCTTTTATATG 59.463 42.308 0.00 0.00 45.67 1.78
3359 3709 6.213600 ACACAGTCAGGTCACTCCTTTTATAT 59.786 38.462 0.00 0.00 45.67 0.86
3360 3710 5.542635 ACACAGTCAGGTCACTCCTTTTATA 59.457 40.000 0.00 0.00 45.67 0.98
3361 3711 4.348168 ACACAGTCAGGTCACTCCTTTTAT 59.652 41.667 0.00 0.00 45.67 1.40
3362 3712 3.709653 ACACAGTCAGGTCACTCCTTTTA 59.290 43.478 0.00 0.00 45.67 1.52
3370 3720 0.037232 GGGCTACACAGTCAGGTCAC 60.037 60.000 0.00 0.00 0.00 3.67
3481 3831 3.963665 TGCTGTTCAAATTGTACTGCAC 58.036 40.909 24.73 6.71 43.48 4.57
3491 3841 5.904941 TCAACAATGTTCTGCTGTTCAAAT 58.095 33.333 0.00 0.00 30.99 2.32
3492 3842 5.321959 TCAACAATGTTCTGCTGTTCAAA 57.678 34.783 0.00 0.00 30.99 2.69
3649 4002 2.996621 AGCGTATGTTGCAAGAAGAGTC 59.003 45.455 0.00 0.00 33.85 3.36
3714 4067 2.829120 GGCCCCTAAATGCTTACACAAA 59.171 45.455 0.00 0.00 0.00 2.83
3730 4083 0.536724 GTCACAATCCAAATGGCCCC 59.463 55.000 0.00 0.00 34.44 5.80
3731 4084 1.560505 AGTCACAATCCAAATGGCCC 58.439 50.000 0.00 0.00 34.44 5.80
3732 4085 3.701040 ACATAGTCACAATCCAAATGGCC 59.299 43.478 0.00 0.00 34.44 5.36
3733 4086 4.989279 ACATAGTCACAATCCAAATGGC 57.011 40.909 0.00 0.00 34.44 4.40
3734 4087 5.577945 GCAAACATAGTCACAATCCAAATGG 59.422 40.000 0.00 0.00 0.00 3.16
3735 4088 5.577945 GGCAAACATAGTCACAATCCAAATG 59.422 40.000 0.00 0.00 0.00 2.32
3736 4089 5.481473 AGGCAAACATAGTCACAATCCAAAT 59.519 36.000 0.00 0.00 0.00 2.32
3737 4090 4.832266 AGGCAAACATAGTCACAATCCAAA 59.168 37.500 0.00 0.00 0.00 3.28
3738 4091 4.406456 AGGCAAACATAGTCACAATCCAA 58.594 39.130 0.00 0.00 0.00 3.53
3739 4092 4.032960 AGGCAAACATAGTCACAATCCA 57.967 40.909 0.00 0.00 0.00 3.41
3740 4093 6.699575 ATAAGGCAAACATAGTCACAATCC 57.300 37.500 0.00 0.00 0.00 3.01
3741 4094 9.669353 CAATATAAGGCAAACATAGTCACAATC 57.331 33.333 0.00 0.00 0.00 2.67
3742 4095 8.137437 GCAATATAAGGCAAACATAGTCACAAT 58.863 33.333 0.00 0.00 0.00 2.71
3743 4096 7.416213 GGCAATATAAGGCAAACATAGTCACAA 60.416 37.037 2.00 0.00 0.00 3.33
3744 4097 6.039270 GGCAATATAAGGCAAACATAGTCACA 59.961 38.462 2.00 0.00 0.00 3.58
3745 4098 6.039270 TGGCAATATAAGGCAAACATAGTCAC 59.961 38.462 2.36 0.00 38.71 3.67
3746 4099 6.039270 GTGGCAATATAAGGCAAACATAGTCA 59.961 38.462 6.00 0.00 43.50 3.41
3747 4100 6.039270 TGTGGCAATATAAGGCAAACATAGTC 59.961 38.462 6.00 0.00 43.50 2.59
3748 4101 5.890985 TGTGGCAATATAAGGCAAACATAGT 59.109 36.000 6.00 0.00 43.50 2.12
3749 4102 6.389830 TGTGGCAATATAAGGCAAACATAG 57.610 37.500 6.00 0.00 43.50 2.23
3750 4103 6.975196 ATGTGGCAATATAAGGCAAACATA 57.025 33.333 13.29 0.00 43.50 2.29
3751 4104 5.874897 ATGTGGCAATATAAGGCAAACAT 57.125 34.783 6.00 9.04 43.50 2.71
3752 4105 5.674052 AATGTGGCAATATAAGGCAAACA 57.326 34.783 6.00 7.48 43.50 2.83
3753 4106 8.661352 AAATAATGTGGCAATATAAGGCAAAC 57.339 30.769 6.00 2.89 43.50 2.93
3754 4107 9.678260 AAAAATAATGTGGCAATATAAGGCAAA 57.322 25.926 6.00 2.07 43.50 3.68
3755 4108 9.107177 CAAAAATAATGTGGCAATATAAGGCAA 57.893 29.630 6.00 0.00 43.50 4.52
3756 4109 7.226325 GCAAAAATAATGTGGCAATATAAGGCA 59.774 33.333 0.00 0.86 39.41 4.75
3757 4110 7.307930 GGCAAAAATAATGTGGCAATATAAGGC 60.308 37.037 0.00 0.00 37.73 4.35
3758 4111 7.714377 TGGCAAAAATAATGTGGCAATATAAGG 59.286 33.333 0.00 0.00 43.91 2.69
3759 4112 8.659925 TGGCAAAAATAATGTGGCAATATAAG 57.340 30.769 0.00 0.00 43.91 1.73
3766 4119 3.070734 AGTGTGGCAAAAATAATGTGGCA 59.929 39.130 0.00 0.00 44.57 4.92
3767 4120 3.663025 AGTGTGGCAAAAATAATGTGGC 58.337 40.909 0.00 0.00 38.26 5.01
3768 4121 4.083908 GCAAGTGTGGCAAAAATAATGTGG 60.084 41.667 0.00 0.00 0.00 4.17
3769 4122 5.021120 GCAAGTGTGGCAAAAATAATGTG 57.979 39.130 0.00 0.00 0.00 3.21
3781 4134 6.561430 CAACTCAAGTTAGGCAAGTGTGGC 62.561 50.000 0.00 0.00 42.59 5.01
3782 4135 2.851195 ACTCAAGTTAGGCAAGTGTGG 58.149 47.619 0.00 0.00 0.00 4.17
3783 4136 3.548818 GCAACTCAAGTTAGGCAAGTGTG 60.549 47.826 0.00 0.00 36.32 3.82
3784 4137 2.618709 GCAACTCAAGTTAGGCAAGTGT 59.381 45.455 0.00 0.00 36.32 3.55
3785 4138 2.880890 AGCAACTCAAGTTAGGCAAGTG 59.119 45.455 7.64 0.00 36.32 3.16
3786 4139 3.142174 GAGCAACTCAAGTTAGGCAAGT 58.858 45.455 7.64 0.00 36.32 3.16
3787 4140 3.141398 TGAGCAACTCAAGTTAGGCAAG 58.859 45.455 7.64 0.00 37.57 4.01
3788 4141 3.207265 TGAGCAACTCAAGTTAGGCAA 57.793 42.857 7.64 0.00 37.57 4.52
3789 4142 2.928801 TGAGCAACTCAAGTTAGGCA 57.071 45.000 7.64 0.00 37.57 4.75
3797 4150 2.224257 GCCCCAATTTTGAGCAACTCAA 60.224 45.455 5.94 5.94 46.93 3.02
3798 4151 1.344114 GCCCCAATTTTGAGCAACTCA 59.656 47.619 0.00 0.00 38.87 3.41
3799 4152 1.620323 AGCCCCAATTTTGAGCAACTC 59.380 47.619 7.65 0.00 32.07 3.01
3800 4153 1.345415 CAGCCCCAATTTTGAGCAACT 59.655 47.619 7.65 0.00 32.07 3.16
3801 4154 1.070601 ACAGCCCCAATTTTGAGCAAC 59.929 47.619 7.65 0.00 32.07 4.17
3802 4155 1.422531 ACAGCCCCAATTTTGAGCAA 58.577 45.000 7.65 0.00 32.07 3.91
3803 4156 1.422531 AACAGCCCCAATTTTGAGCA 58.577 45.000 7.65 0.00 32.07 4.26
3804 4157 2.145536 CAAACAGCCCCAATTTTGAGC 58.854 47.619 0.00 0.00 31.79 4.26
3805 4158 2.104622 ACCAAACAGCCCCAATTTTGAG 59.895 45.455 0.00 0.00 31.79 3.02
3806 4159 2.122768 ACCAAACAGCCCCAATTTTGA 58.877 42.857 0.00 0.00 31.79 2.69
3807 4160 2.636647 ACCAAACAGCCCCAATTTTG 57.363 45.000 0.00 0.00 0.00 2.44
3808 4161 3.201930 AGAAACCAAACAGCCCCAATTTT 59.798 39.130 0.00 0.00 0.00 1.82
3809 4162 2.777114 AGAAACCAAACAGCCCCAATTT 59.223 40.909 0.00 0.00 0.00 1.82
3810 4163 2.407562 AGAAACCAAACAGCCCCAATT 58.592 42.857 0.00 0.00 0.00 2.32
3811 4164 2.101640 AGAAACCAAACAGCCCCAAT 57.898 45.000 0.00 0.00 0.00 3.16
3812 4165 2.593026 CTAGAAACCAAACAGCCCCAA 58.407 47.619 0.00 0.00 0.00 4.12
3813 4166 1.821666 GCTAGAAACCAAACAGCCCCA 60.822 52.381 0.00 0.00 0.00 4.96
3814 4167 0.888619 GCTAGAAACCAAACAGCCCC 59.111 55.000 0.00 0.00 0.00 5.80
3815 4168 0.888619 GGCTAGAAACCAAACAGCCC 59.111 55.000 0.00 0.00 44.93 5.19
3817 4170 1.953686 TGTGGCTAGAAACCAAACAGC 59.046 47.619 0.00 0.00 39.39 4.40
3818 4171 6.324819 CAATATGTGGCTAGAAACCAAACAG 58.675 40.000 0.00 0.00 39.39 3.16
3819 4172 5.336372 GCAATATGTGGCTAGAAACCAAACA 60.336 40.000 0.00 0.00 39.39 2.83
3820 4173 5.102313 GCAATATGTGGCTAGAAACCAAAC 58.898 41.667 0.00 0.00 39.39 2.93
3821 4174 5.323371 GCAATATGTGGCTAGAAACCAAA 57.677 39.130 0.00 0.00 39.39 3.28
3822 4175 4.981806 GCAATATGTGGCTAGAAACCAA 57.018 40.909 0.00 0.00 39.39 3.67
3833 4186 3.367292 GGTCAAAGTGTGGCAATATGTGG 60.367 47.826 0.00 0.00 31.37 4.17
3834 4187 3.255395 TGGTCAAAGTGTGGCAATATGTG 59.745 43.478 0.00 0.00 31.37 3.21
3835 4188 3.495331 TGGTCAAAGTGTGGCAATATGT 58.505 40.909 0.00 0.00 31.37 2.29
3836 4189 4.487948 CTTGGTCAAAGTGTGGCAATATG 58.512 43.478 0.00 0.00 31.37 1.78
3837 4190 4.789012 CTTGGTCAAAGTGTGGCAATAT 57.211 40.909 0.00 0.00 31.37 1.28
3848 4201 2.884639 CACCCACCTAACTTGGTCAAAG 59.115 50.000 0.00 0.00 38.45 2.77
3849 4202 2.242708 ACACCCACCTAACTTGGTCAAA 59.757 45.455 0.00 0.00 38.45 2.69
3850 4203 1.847737 ACACCCACCTAACTTGGTCAA 59.152 47.619 0.00 0.00 38.45 3.18
3851 4204 1.513858 ACACCCACCTAACTTGGTCA 58.486 50.000 0.00 0.00 38.45 4.02
3852 4205 2.621526 CAAACACCCACCTAACTTGGTC 59.378 50.000 0.00 0.00 38.45 4.02
3853 4206 2.661718 CAAACACCCACCTAACTTGGT 58.338 47.619 0.00 0.00 41.77 3.67
3854 4207 1.960689 CCAAACACCCACCTAACTTGG 59.039 52.381 0.00 0.00 0.00 3.61
3855 4208 2.661718 ACCAAACACCCACCTAACTTG 58.338 47.619 0.00 0.00 0.00 3.16
3856 4209 3.053170 AGAACCAAACACCCACCTAACTT 60.053 43.478 0.00 0.00 0.00 2.66
3857 4210 2.512476 AGAACCAAACACCCACCTAACT 59.488 45.455 0.00 0.00 0.00 2.24
3858 4211 2.940158 AGAACCAAACACCCACCTAAC 58.060 47.619 0.00 0.00 0.00 2.34
3859 4212 3.497227 GCTAGAACCAAACACCCACCTAA 60.497 47.826 0.00 0.00 0.00 2.69
3860 4213 2.039348 GCTAGAACCAAACACCCACCTA 59.961 50.000 0.00 0.00 0.00 3.08
3861 4214 1.202891 GCTAGAACCAAACACCCACCT 60.203 52.381 0.00 0.00 0.00 4.00
3862 4215 1.244816 GCTAGAACCAAACACCCACC 58.755 55.000 0.00 0.00 0.00 4.61
3863 4216 1.244816 GGCTAGAACCAAACACCCAC 58.755 55.000 0.00 0.00 0.00 4.61
3864 4217 0.847373 TGGCTAGAACCAAACACCCA 59.153 50.000 0.00 0.00 36.55 4.51
3865 4218 1.244816 GTGGCTAGAACCAAACACCC 58.755 55.000 0.00 0.00 42.70 4.61
3866 4219 1.607148 GTGTGGCTAGAACCAAACACC 59.393 52.381 5.14 0.00 45.87 4.16
3869 4222 2.271944 AGGTGTGGCTAGAACCAAAC 57.728 50.000 0.00 0.00 45.86 2.93
3870 4223 3.244770 CCTTAGGTGTGGCTAGAACCAAA 60.245 47.826 0.00 0.00 42.70 3.28
3871 4224 2.304761 CCTTAGGTGTGGCTAGAACCAA 59.695 50.000 0.00 0.00 42.70 3.67
3872 4225 1.906574 CCTTAGGTGTGGCTAGAACCA 59.093 52.381 0.00 0.00 36.37 3.67
3873 4226 1.407025 GCCTTAGGTGTGGCTAGAACC 60.407 57.143 0.00 0.00 45.26 3.62
3874 4227 2.025589 GCCTTAGGTGTGGCTAGAAC 57.974 55.000 0.00 0.00 45.26 3.01
3881 4234 4.871933 AAAATTCTTGCCTTAGGTGTGG 57.128 40.909 0.00 0.00 0.00 4.17
3901 4254 3.838565 TGGGGTTCACTGCTCATAAAAA 58.161 40.909 0.00 0.00 0.00 1.94
3902 4255 3.517296 TGGGGTTCACTGCTCATAAAA 57.483 42.857 0.00 0.00 0.00 1.52
3903 4256 3.737559 ATGGGGTTCACTGCTCATAAA 57.262 42.857 0.00 0.00 0.00 1.40
3904 4257 4.165950 ACATATGGGGTTCACTGCTCATAA 59.834 41.667 7.80 0.00 0.00 1.90
3905 4258 3.716353 ACATATGGGGTTCACTGCTCATA 59.284 43.478 7.80 0.00 0.00 2.15
3906 4259 2.511218 ACATATGGGGTTCACTGCTCAT 59.489 45.455 7.80 0.00 0.00 2.90
3907 4260 1.915489 ACATATGGGGTTCACTGCTCA 59.085 47.619 7.80 0.00 0.00 4.26
3908 4261 2.092968 TGACATATGGGGTTCACTGCTC 60.093 50.000 7.80 0.00 0.00 4.26
3909 4262 1.915489 TGACATATGGGGTTCACTGCT 59.085 47.619 7.80 0.00 0.00 4.24
3910 4263 2.418368 TGACATATGGGGTTCACTGC 57.582 50.000 7.80 0.00 0.00 4.40
3911 4264 5.163311 TGTCTATGACATATGGGGTTCACTG 60.163 44.000 7.80 0.00 37.67 3.66
3912 4265 4.968719 TGTCTATGACATATGGGGTTCACT 59.031 41.667 7.80 0.00 37.67 3.41
3913 4266 5.057149 GTGTCTATGACATATGGGGTTCAC 58.943 45.833 7.80 4.25 44.63 3.18
3914 4267 4.719273 TGTGTCTATGACATATGGGGTTCA 59.281 41.667 7.80 1.85 44.63 3.18
3915 4268 5.290493 TGTGTCTATGACATATGGGGTTC 57.710 43.478 7.80 0.00 44.63 3.62
3916 4269 5.708736 TTGTGTCTATGACATATGGGGTT 57.291 39.130 7.80 0.00 44.63 4.11
3917 4270 5.708736 TTTGTGTCTATGACATATGGGGT 57.291 39.130 7.80 0.00 44.63 4.95
3918 4271 6.603201 ACTTTTTGTGTCTATGACATATGGGG 59.397 38.462 7.80 0.00 44.63 4.96
3919 4272 7.475015 CACTTTTTGTGTCTATGACATATGGG 58.525 38.462 7.80 0.00 44.63 4.00
3935 4288 3.199727 AGGGAATTTGCCACACTTTTTGT 59.800 39.130 9.80 0.00 39.97 2.83
3936 4289 3.807553 AGGGAATTTGCCACACTTTTTG 58.192 40.909 9.80 0.00 0.00 2.44
3937 4290 4.502105 AAGGGAATTTGCCACACTTTTT 57.498 36.364 9.80 0.00 0.00 1.94
3938 4291 4.040339 CCTAAGGGAATTTGCCACACTTTT 59.960 41.667 9.80 0.00 33.58 2.27
3939 4292 3.578282 CCTAAGGGAATTTGCCACACTTT 59.422 43.478 9.80 0.00 33.58 2.66
3940 4293 3.165071 CCTAAGGGAATTTGCCACACTT 58.835 45.455 9.80 0.00 33.58 3.16
3941 4294 2.807676 CCTAAGGGAATTTGCCACACT 58.192 47.619 9.80 0.00 33.58 3.55
3942 4295 1.204704 GCCTAAGGGAATTTGCCACAC 59.795 52.381 9.80 0.00 33.58 3.82
3943 4296 1.203112 TGCCTAAGGGAATTTGCCACA 60.203 47.619 9.80 0.00 33.58 4.17
3944 4297 1.555967 TGCCTAAGGGAATTTGCCAC 58.444 50.000 9.80 0.00 33.58 5.01
3945 4298 2.178580 CTTGCCTAAGGGAATTTGCCA 58.821 47.619 9.80 0.00 31.43 4.92
3946 4299 1.134699 GCTTGCCTAAGGGAATTTGCC 60.135 52.381 0.00 0.00 31.43 4.52
3947 4300 1.134699 GGCTTGCCTAAGGGAATTTGC 60.135 52.381 4.11 0.00 31.43 3.68
3948 4301 2.178580 TGGCTTGCCTAAGGGAATTTG 58.821 47.619 13.18 0.00 31.43 2.32
3949 4302 2.621556 TGGCTTGCCTAAGGGAATTT 57.378 45.000 13.18 0.00 31.43 1.82
3950 4303 2.621556 TTGGCTTGCCTAAGGGAATT 57.378 45.000 13.18 0.00 31.43 2.17
3951 4304 2.225369 ACTTTGGCTTGCCTAAGGGAAT 60.225 45.455 28.97 13.21 31.43 3.01
3952 4305 1.146982 ACTTTGGCTTGCCTAAGGGAA 59.853 47.619 28.97 7.95 34.40 3.97
3953 4306 0.777446 ACTTTGGCTTGCCTAAGGGA 59.223 50.000 28.97 2.46 34.40 4.20
3954 4307 0.890683 CACTTTGGCTTGCCTAAGGG 59.109 55.000 28.97 24.82 34.40 3.95
3955 4308 1.270550 CACACTTTGGCTTGCCTAAGG 59.729 52.381 28.97 22.12 34.40 2.69
3956 4309 1.270550 CCACACTTTGGCTTGCCTAAG 59.729 52.381 25.92 25.92 39.07 2.18
3957 4310 1.327303 CCACACTTTGGCTTGCCTAA 58.673 50.000 13.18 10.47 39.07 2.69
3958 4311 3.034924 CCACACTTTGGCTTGCCTA 57.965 52.632 13.18 2.12 39.07 3.93
3959 4312 3.860681 CCACACTTTGGCTTGCCT 58.139 55.556 13.18 0.00 39.07 4.75
3966 4319 7.350110 CAATTAATTGTTAGCCACACTTTGG 57.650 36.000 18.32 0.00 39.51 3.28
3981 4334 9.796062 GTCAACAAATGCTAACACAATTAATTG 57.204 29.630 23.60 23.60 43.26 2.32
3982 4335 9.539825 TGTCAACAAATGCTAACACAATTAATT 57.460 25.926 0.00 0.00 0.00 1.40
3983 4336 9.195411 CTGTCAACAAATGCTAACACAATTAAT 57.805 29.630 0.00 0.00 0.00 1.40
3984 4337 8.194104 ACTGTCAACAAATGCTAACACAATTAA 58.806 29.630 0.00 0.00 0.00 1.40
3985 4338 7.647318 CACTGTCAACAAATGCTAACACAATTA 59.353 33.333 0.00 0.00 0.00 1.40
3986 4339 6.476380 CACTGTCAACAAATGCTAACACAATT 59.524 34.615 0.00 0.00 0.00 2.32
4050 4403 1.420430 CGGGGCCTGGAGTATAAAGA 58.580 55.000 3.77 0.00 0.00 2.52
4051 4404 0.250338 GCGGGGCCTGGAGTATAAAG 60.250 60.000 15.62 0.00 0.00 1.85
4052 4405 0.693092 AGCGGGGCCTGGAGTATAAA 60.693 55.000 15.62 0.00 0.00 1.40
4053 4406 0.693092 AAGCGGGGCCTGGAGTATAA 60.693 55.000 15.62 0.00 0.00 0.98
4054 4407 1.074775 AAGCGGGGCCTGGAGTATA 60.075 57.895 15.62 0.00 0.00 1.47
4055 4408 2.366972 AAGCGGGGCCTGGAGTAT 60.367 61.111 15.62 0.00 0.00 2.12
4056 4409 3.399181 CAAGCGGGGCCTGGAGTA 61.399 66.667 15.62 0.00 0.00 2.59
4080 4433 1.544686 ACACGCAGAAAGCAAAAACG 58.455 45.000 0.00 0.00 46.13 3.60
4106 4459 3.243636 CGGCCGGTAAGATACAACTGTAT 60.244 47.826 20.10 1.96 43.38 2.29
4107 4460 2.099592 CGGCCGGTAAGATACAACTGTA 59.900 50.000 20.10 0.00 34.67 2.74
4128 4481 0.320946 TTCCGGTGGGATTTCGTGTC 60.321 55.000 0.00 0.00 43.41 3.67
4129 4482 0.108963 TTTCCGGTGGGATTTCGTGT 59.891 50.000 0.00 0.00 43.41 4.49
4231 4585 3.096092 TCCAGCTGGAAAAACACACTTT 58.904 40.909 33.41 0.00 42.18 2.66
4295 4650 0.109132 GCTTGGATGGCCGTTTTCTG 60.109 55.000 0.00 0.00 36.79 3.02
4333 4688 6.500684 TGGAGCTTCAAATAAACATGTCTC 57.499 37.500 0.00 0.00 0.00 3.36
4366 4721 7.226059 AGAACTATGTTGGGGGATTAAGAAT 57.774 36.000 0.00 0.00 0.00 2.40
4481 4836 9.853555 CTTCACACTGAGATAGGTGATATAATC 57.146 37.037 0.00 0.00 36.86 1.75
4485 4840 7.780271 TGTACTTCACACTGAGATAGGTGATAT 59.220 37.037 0.00 0.00 36.86 1.63
4499 4854 5.280011 CCCTCACCTATTTGTACTTCACACT 60.280 44.000 0.00 0.00 36.69 3.55
4543 4898 2.274645 CCATGGCGGCACAGGAAAA 61.275 57.895 23.16 0.00 0.00 2.29
4547 4902 1.893808 GTATCCATGGCGGCACAGG 60.894 63.158 16.34 19.90 33.14 4.00
4558 4913 7.179872 AGACAGTACATATGCTCATGTATCCAT 59.820 37.037 1.58 0.00 41.97 3.41
4589 4944 3.193267 TGGCTGGAAATGATACAAACAGC 59.807 43.478 0.00 0.00 46.54 4.40
4617 4972 8.573035 GGGAATGTGTTCAGAAACTAATAAACA 58.427 33.333 0.00 0.00 36.01 2.83
4634 4989 9.936329 ATCTGGTAAATAAAATAGGGAATGTGT 57.064 29.630 0.00 0.00 0.00 3.72
4774 5129 2.034685 CAGAAAGAGACGGTGTCAGACA 59.965 50.000 8.09 0.00 34.60 3.41
4954 5309 8.985315 AATATATCCTTCAGAAAACAGCATCA 57.015 30.769 0.00 0.00 0.00 3.07
4975 5330 7.276218 GCAATTCACAGCAAACACACATAATAT 59.724 33.333 0.00 0.00 0.00 1.28
5224 5582 2.191641 GAGGGGGCATGAGCTGAC 59.808 66.667 0.00 0.00 41.70 3.51
5229 5587 2.190578 GAACGGAGGGGGCATGAG 59.809 66.667 0.00 0.00 0.00 2.90
5234 5592 0.033894 TATTTTGGAACGGAGGGGGC 60.034 55.000 0.00 0.00 0.00 5.80
5236 5594 2.640184 GAGTATTTTGGAACGGAGGGG 58.360 52.381 0.00 0.00 0.00 4.79
5247 5605 2.500098 TCCGGACAGAGGGAGTATTTTG 59.500 50.000 0.00 0.00 0.00 2.44
5261 5619 3.835978 TCTCCAAAGAGTAATTCCGGACA 59.164 43.478 1.83 0.00 41.26 4.02
5262 5620 4.467198 TCTCCAAAGAGTAATTCCGGAC 57.533 45.455 1.83 0.00 41.26 4.79
5276 5634 3.408634 GGACAGACGGAATTTCTCCAAA 58.591 45.455 0.00 0.00 45.74 3.28
5297 5655 6.545504 ACATTCATTTCTCCGATAATTCCG 57.454 37.500 0.00 0.00 0.00 4.30
5340 5702 9.214957 ACTTGTCGTGAAAATAGATGTATCAAA 57.785 29.630 0.00 0.00 0.00 2.69
5342 5704 9.863845 TTACTTGTCGTGAAAATAGATGTATCA 57.136 29.630 0.00 0.00 0.00 2.15
5357 5719 4.115516 CTCCATCTGGATTACTTGTCGTG 58.884 47.826 0.00 0.00 44.46 4.35
5359 5721 3.133003 ACCTCCATCTGGATTACTTGTCG 59.867 47.826 0.00 0.00 44.46 4.35
5360 5722 4.762289 ACCTCCATCTGGATTACTTGTC 57.238 45.455 0.00 0.00 44.46 3.18
5361 5723 8.378565 CAATATACCTCCATCTGGATTACTTGT 58.621 37.037 0.00 0.00 44.46 3.16
5362 5724 8.378565 ACAATATACCTCCATCTGGATTACTTG 58.621 37.037 0.00 5.44 44.46 3.16
5363 5725 8.378565 CACAATATACCTCCATCTGGATTACTT 58.621 37.037 0.00 0.00 44.46 2.24
5364 5726 7.514127 ACACAATATACCTCCATCTGGATTACT 59.486 37.037 0.00 0.00 44.46 2.24
5365 5727 7.680730 ACACAATATACCTCCATCTGGATTAC 58.319 38.462 0.00 0.00 44.46 1.89
5367 5729 6.770286 ACACAATATACCTCCATCTGGATT 57.230 37.500 0.00 0.00 44.46 3.01
5368 5730 7.292356 TGTTACACAATATACCTCCATCTGGAT 59.708 37.037 0.00 0.00 44.46 3.41
5370 5732 6.826668 TGTTACACAATATACCTCCATCTGG 58.173 40.000 0.00 0.00 0.00 3.86
5514 5887 6.959639 AACTTGTGTATGTTTGACCAAGAT 57.040 33.333 0.00 0.00 33.22 2.40
5515 5888 6.375736 TCAAACTTGTGTATGTTTGACCAAGA 59.624 34.615 14.65 0.00 46.88 3.02
5516 5889 6.559810 TCAAACTTGTGTATGTTTGACCAAG 58.440 36.000 14.65 0.00 46.88 3.61
5517 5890 6.516739 TCAAACTTGTGTATGTTTGACCAA 57.483 33.333 14.65 0.00 46.88 3.67
5565 6363 9.326413 ACATACTCTTTCCGTTCCAAAATATAG 57.674 33.333 0.00 0.00 0.00 1.31
5566 6364 9.321562 GACATACTCTTTCCGTTCCAAAATATA 57.678 33.333 0.00 0.00 0.00 0.86
5582 6380 9.429359 CTCTGTAATTTCTTGTGACATACTCTT 57.571 33.333 0.00 0.00 0.00 2.85
5609 6407 2.419324 CTCTTGCCACAGAAGCAGAATC 59.581 50.000 0.00 0.00 42.17 2.52
5648 6448 1.478654 GCAACCCCAGAGTTTCCTGAA 60.479 52.381 0.00 0.00 36.29 3.02
5652 6452 1.971695 CCGCAACCCCAGAGTTTCC 60.972 63.158 0.00 0.00 0.00 3.13
5802 6610 9.149225 GAGAACCTTGTATGATATGACATCATC 57.851 37.037 3.12 0.00 39.30 2.92
5806 6616 6.933521 GCTGAGAACCTTGTATGATATGACAT 59.066 38.462 0.00 0.00 0.00 3.06
5835 6645 8.107095 TCTTAGTTATCTTGGTTTGGTTATGCT 58.893 33.333 0.00 0.00 0.00 3.79
5848 6660 7.645340 CGCATGGGAAAAATCTTAGTTATCTTG 59.355 37.037 3.11 0.00 0.00 3.02
5865 6678 0.589223 GTGTCGTTTTCGCATGGGAA 59.411 50.000 20.25 20.25 43.73 3.97
5904 6717 1.512996 CGCAGCAAGGCCATATGGAG 61.513 60.000 26.47 12.10 37.39 3.86
5920 6733 1.382522 GGAAGCAGAATCAATCCGCA 58.617 50.000 0.00 0.00 33.67 5.69
5928 6741 1.884926 CGCCGAGGGAAGCAGAATC 60.885 63.158 0.00 0.00 0.00 2.52
5929 6742 1.690219 ATCGCCGAGGGAAGCAGAAT 61.690 55.000 0.00 0.00 0.00 2.40
5930 6743 2.298158 GATCGCCGAGGGAAGCAGAA 62.298 60.000 0.00 0.00 0.00 3.02
5931 6744 2.759973 ATCGCCGAGGGAAGCAGA 60.760 61.111 0.00 0.00 0.00 4.26
5989 6802 7.642071 AACACATGCTATTTTGCTAACTTTG 57.358 32.000 0.00 0.00 0.00 2.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.