Multiple sequence alignment - TraesCS3D01G527700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G527700 chr3D 100.000 5909 0 0 1 5909 606076323 606082231 0.000000e+00 10912.0
1 TraesCS3D01G527700 chr3D 95.342 322 13 2 3921 4242 529122039 529121720 1.470000e-140 510.0
2 TraesCS3D01G527700 chr3D 90.303 165 10 2 4236 4394 598889731 598889895 1.670000e-50 211.0
3 TraesCS3D01G527700 chr3D 89.759 166 11 2 4236 4395 149764622 149764787 2.160000e-49 207.0
4 TraesCS3D01G527700 chr3B 93.097 1695 84 17 2230 3921 816011836 816010172 0.000000e+00 2451.0
5 TraesCS3D01G527700 chr3B 90.056 895 56 18 4228 5096 816010175 816009288 0.000000e+00 1129.0
6 TraesCS3D01G527700 chr3B 88.523 819 54 20 1435 2234 816012685 816011888 0.000000e+00 955.0
7 TraesCS3D01G527700 chr3B 94.836 581 28 2 5330 5909 816009170 816008591 0.000000e+00 905.0
8 TraesCS3D01G527700 chr3B 84.553 369 24 14 977 1321 816013258 816012899 9.490000e-88 335.0
9 TraesCS3D01G527700 chr3B 96.875 32 1 0 5226 5257 692011086 692011117 3.000000e-03 54.7
10 TraesCS3D01G527700 chr3A 92.632 1330 42 23 1361 2670 738136919 738135626 0.000000e+00 1862.0
11 TraesCS3D01G527700 chr3A 97.406 694 10 1 2720 3405 738135618 738134925 0.000000e+00 1175.0
12 TraesCS3D01G527700 chr3A 84.815 1192 105 39 31 1168 738138427 738137258 0.000000e+00 1129.0
13 TraesCS3D01G527700 chr3A 90.887 834 33 21 4228 5051 738134520 738133720 0.000000e+00 1079.0
14 TraesCS3D01G527700 chr3A 88.536 881 62 20 5049 5909 738133297 738132436 0.000000e+00 1031.0
15 TraesCS3D01G527700 chr3A 96.577 555 17 2 1 553 738140093 738139539 0.000000e+00 918.0
16 TraesCS3D01G527700 chr3A 92.823 418 10 10 3518 3921 738134928 738134517 6.600000e-164 588.0
17 TraesCS3D01G527700 chr3A 88.571 175 11 5 4229 4396 726768960 726769132 2.790000e-48 204.0
18 TraesCS3D01G527700 chr3A 94.656 131 7 0 1202 1332 738139067 738138937 2.790000e-48 204.0
19 TraesCS3D01G527700 chr3A 87.293 181 15 4 4218 4392 585298159 585297981 3.610000e-47 200.0
20 TraesCS3D01G527700 chr3A 94.949 99 4 1 1361 1458 738138943 738138845 2.850000e-33 154.0
21 TraesCS3D01G527700 chr3A 94.444 72 4 0 1261 1332 738136984 738136913 1.740000e-20 111.0
22 TraesCS3D01G527700 chr5D 97.778 315 7 0 3915 4229 2621720 2622034 1.450000e-150 544.0
23 TraesCS3D01G527700 chr5D 95.298 319 13 2 3919 4235 404863803 404864121 6.830000e-139 505.0
24 TraesCS3D01G527700 chr5D 89.535 172 12 2 4227 4392 461072592 461072763 4.640000e-51 213.0
25 TraesCS3D01G527700 chr5D 94.167 120 6 1 3400 3519 422435298 422435180 1.310000e-41 182.0
26 TraesCS3D01G527700 chr5D 82.723 191 17 9 4986 5163 517846936 517846749 7.930000e-34 156.0
27 TraesCS3D01G527700 chr5D 80.788 203 18 15 4974 5163 287823160 287823354 7.990000e-29 139.0
28 TraesCS3D01G527700 chr5D 80.311 193 13 14 4971 5148 278630931 278631113 8.040000e-24 122.0
29 TraesCS3D01G527700 chr5D 83.582 134 16 5 4981 5111 5223948 5223818 2.890000e-23 121.0
30 TraesCS3D01G527700 chr5D 85.965 114 13 3 4973 5086 510121289 510121179 1.040000e-22 119.0
31 TraesCS3D01G527700 chr1D 98.382 309 5 0 3921 4229 469044068 469043760 1.450000e-150 544.0
32 TraesCS3D01G527700 chr1D 95.584 317 10 4 3919 4233 471113403 471113717 6.830000e-139 505.0
33 TraesCS3D01G527700 chr1D 95.798 119 4 1 3402 3520 53156881 53156998 2.170000e-44 191.0
34 TraesCS3D01G527700 chr1D 92.742 124 7 2 3400 3523 290441164 290441285 1.690000e-40 178.0
35 TraesCS3D01G527700 chr1D 78.173 197 25 11 4981 5163 493485856 493486048 6.260000e-20 110.0
36 TraesCS3D01G527700 chr7D 97.188 320 8 1 3919 4238 83598907 83598589 1.870000e-149 540.0
37 TraesCS3D01G527700 chr7D 95.798 119 4 1 3401 3519 535748410 535748527 2.170000e-44 191.0
38 TraesCS3D01G527700 chr7D 79.899 199 21 11 4981 5163 47420800 47420995 1.730000e-25 128.0
39 TraesCS3D01G527700 chr6D 97.411 309 8 0 3921 4229 368209412 368209104 1.460000e-145 527.0
40 TraesCS3D01G527700 chr6D 90.123 162 10 2 4237 4392 90112399 90112238 7.760000e-49 206.0
41 TraesCS3D01G527700 chr6D 87.671 73 9 0 5001 5073 168224078 168224150 1.060000e-12 86.1
42 TraesCS3D01G527700 chr4D 95.873 315 13 0 3917 4231 507762506 507762820 1.470000e-140 510.0
43 TraesCS3D01G527700 chr4D 80.000 205 23 10 4973 5163 416060702 416060902 1.030000e-27 135.0
44 TraesCS3D01G527700 chr4D 79.577 142 26 2 4974 5114 21762500 21762361 1.360000e-16 99.0
45 TraesCS3D01G527700 chr1B 95.513 312 14 0 3918 4229 667744591 667744902 3.180000e-137 499.0
46 TraesCS3D01G527700 chr4B 90.741 162 9 3 4237 4392 28724143 28724304 1.670000e-50 211.0
47 TraesCS3D01G527700 chr4B 82.659 173 13 11 5004 5163 328113443 328113275 2.870000e-28 137.0
48 TraesCS3D01G527700 chr4B 79.793 193 22 9 4984 5163 512757789 512757977 2.240000e-24 124.0
49 TraesCS3D01G527700 chr4B 79.286 140 26 2 4973 5111 32912521 32912658 1.750000e-15 95.3
50 TraesCS3D01G527700 chr2B 79.538 303 41 9 4554 4843 726704728 726705022 4.670000e-46 196.0
51 TraesCS3D01G527700 chr2B 79.538 303 41 9 4554 4843 726745617 726745911 4.670000e-46 196.0
52 TraesCS3D01G527700 chr2B 81.905 210 21 11 4966 5163 225571639 225571435 1.700000e-35 161.0
53 TraesCS3D01G527700 chr2B 92.537 67 5 0 3309 3375 726703916 726703982 4.870000e-16 97.1
54 TraesCS3D01G527700 chr2B 92.537 67 5 0 3309 3375 726744805 726744871 4.870000e-16 97.1
55 TraesCS3D01G527700 chr2B 94.737 38 2 0 5288 5325 303170709 303170746 6.400000e-05 60.2
56 TraesCS3D01G527700 chr7B 95.082 122 4 2 3399 3519 477819895 477819775 2.170000e-44 191.0
57 TraesCS3D01G527700 chr7B 93.548 124 7 1 3396 3519 642776975 642777097 3.640000e-42 183.0
58 TraesCS3D01G527700 chr6A 95.763 118 4 1 3402 3519 596228855 596228971 7.820000e-44 189.0
59 TraesCS3D01G527700 chr5B 85.714 182 19 6 4986 5163 650552021 650551843 1.010000e-42 185.0
60 TraesCS3D01G527700 chr5B 80.788 203 19 15 4974 5163 327083533 327083728 2.220000e-29 141.0
61 TraesCS3D01G527700 chr5B 86.290 124 11 5 4973 5094 316713160 316713279 4.810000e-26 130.0
62 TraesCS3D01G527700 chr2A 94.915 118 5 1 3402 3519 56906616 56906500 3.640000e-42 183.0
63 TraesCS3D01G527700 chr2D 80.861 209 22 11 4967 5163 172409398 172409600 1.330000e-31 148.0
64 TraesCS3D01G527700 chr2D 79.894 189 32 4 4981 5166 512033416 512033231 3.720000e-27 134.0
65 TraesCS3D01G527700 chr2D 100.000 29 0 0 331 359 561492426 561492454 3.000000e-03 54.7
66 TraesCS3D01G527700 chr5A 81.675 191 19 10 4986 5163 645267409 645267222 1.720000e-30 145.0
67 TraesCS3D01G527700 chr5A 82.781 151 22 3 4962 5111 531533103 531533250 1.340000e-26 132.0
68 TraesCS3D01G527700 chr5A 79.891 184 29 5 4973 5150 4011824 4011643 1.730000e-25 128.0
69 TraesCS3D01G527700 chr7A 84.397 141 20 2 4974 5112 50024921 50024781 2.870000e-28 137.0
70 TraesCS3D01G527700 chr4A 80.874 183 21 7 4983 5151 662281870 662281688 1.340000e-26 132.0
71 TraesCS3D01G527700 chr4A 84.375 128 16 3 4985 5111 47751183 47751059 8.040000e-24 122.0
72 TraesCS3D01G527700 chr6B 82.166 157 22 4 4958 5111 19140905 19141058 4.810000e-26 130.0
73 TraesCS3D01G527700 chr1A 84.800 125 15 3 4970 5093 591612985 591613106 8.040000e-24 122.0
74 TraesCS3D01G527700 chr1A 89.041 73 8 0 4994 5066 578811197 578811269 2.270000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G527700 chr3D 606076323 606082231 5908 False 10912.0 10912 100.0000 1 5909 1 chr3D.!!$F3 5908
1 TraesCS3D01G527700 chr3B 816008591 816013258 4667 True 1155.0 2451 90.2130 977 5909 5 chr3B.!!$R1 4932
2 TraesCS3D01G527700 chr3A 738132436 738140093 7657 True 825.1 1862 92.7725 1 5909 10 chr3A.!!$R2 5908

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
135 136 0.106167 CCTGTCAGTCGAGGGGGATA 60.106 60.000 0.00 0.0 0.00 2.59 F
1212 2902 0.108945 CTCTCCGTCCAAACCCGTAC 60.109 60.000 0.00 0.0 0.00 3.67 F
1852 3855 0.108186 CCGGTGCTGCTTCTGACATA 60.108 55.000 0.00 0.0 0.00 2.29 F
1854 3857 1.373570 GGTGCTGCTTCTGACATACC 58.626 55.000 0.00 0.0 0.00 2.73 F
2166 4170 2.180204 GGCATGCCGTCGCTACATT 61.180 57.895 23.48 0.0 35.36 2.71 F
3968 6089 0.237498 GCTCCGCGCACTAAAAGTTT 59.763 50.000 8.75 0.0 38.92 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1357 3232 0.035534 TAATGGCCAGAGAAAGCGCA 60.036 50.000 13.05 0.00 0.00 6.09 R
2714 4813 2.503356 ACCCCATGCTGAAAACAAAACA 59.497 40.909 0.00 0.00 0.00 2.83 R
3776 5897 0.609151 CCATGGCCAAATGCAAGACA 59.391 50.000 10.96 0.00 43.89 3.41 R
3792 5913 3.870538 TTCAGGAGCAGCATTATCCAT 57.129 42.857 0.00 0.00 35.45 3.41 R
4042 6163 0.163574 CAAATATGCTGCGCGCGATA 59.836 50.000 37.18 22.34 43.27 2.92 R
5441 8030 0.317269 CGTTTGAGCTGCAGTGTTGG 60.317 55.000 16.64 0.00 0.00 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 5.014333 TGTCTGGGTTTATTTTACTAGGCCA 59.986 40.000 5.01 0.00 0.00 5.36
135 136 0.106167 CCTGTCAGTCGAGGGGGATA 60.106 60.000 0.00 0.00 0.00 2.59
150 151 4.466726 AGGGGGATACTAATTCTCGCATAC 59.533 45.833 0.00 0.00 0.00 2.39
185 186 2.266055 CCTCGCCTGAAGGACACC 59.734 66.667 0.00 0.00 37.39 4.16
370 371 0.524414 AATGTTCGGGCGGCTTTAAC 59.476 50.000 9.56 11.34 0.00 2.01
383 384 3.243569 CGGCTTTAACAAAATGGTGGTGA 60.244 43.478 0.00 0.00 0.00 4.02
401 402 7.174253 TGGTGGTGACATTTAGAACAATTACTC 59.826 37.037 0.00 0.00 46.14 2.59
522 525 1.070577 CGTTCTGCAGAAAGGTTCACG 60.071 52.381 29.99 23.03 35.58 4.35
587 2229 8.387354 TGTACATTGTAAAAGAATATGTCTGCG 58.613 33.333 0.00 0.00 36.40 5.18
612 2254 7.221067 CGTAGTTTAAAAGAATGTTTTGTGCCA 59.779 33.333 0.00 0.00 0.00 4.92
661 2304 8.909708 TCGAAAAATATTTAACCTGCATTCAG 57.090 30.769 0.01 0.00 40.02 3.02
751 2397 8.057812 TGTATCAGAAAAATCTTACGCGTATC 57.942 34.615 21.30 12.54 0.00 2.24
753 2399 9.390795 GTATCAGAAAAATCTTACGCGTATCTA 57.609 33.333 21.30 8.94 0.00 1.98
755 2401 8.692110 TCAGAAAAATCTTACGCGTATCTAAA 57.308 30.769 21.30 5.41 0.00 1.85
756 2402 8.804743 TCAGAAAAATCTTACGCGTATCTAAAG 58.195 33.333 21.30 15.80 0.00 1.85
765 2412 5.861491 ACGCGTATCTAAAGAAATGTACG 57.139 39.130 11.67 6.54 38.26 3.67
773 2420 9.084164 GTATCTAAAGAAATGTACGATGTGTGT 57.916 33.333 0.00 0.00 0.00 3.72
791 2438 5.298276 TGTGTGTTGAAAAACTAGACATCCC 59.702 40.000 0.00 0.00 31.72 3.85
806 2456 5.320277 AGACATCCCTTGAAGAAAAAGGAG 58.680 41.667 3.76 0.00 46.08 3.69
810 2460 6.611236 ACATCCCTTGAAGAAAAAGGAGAAAA 59.389 34.615 3.76 0.00 46.08 2.29
824 2488 8.547967 AAAAGGAGAAAACCAAAGAAAGAAAC 57.452 30.769 0.00 0.00 0.00 2.78
829 2493 5.186215 AGAAAACCAAAGAAAGAAACCCGAA 59.814 36.000 0.00 0.00 0.00 4.30
841 2505 5.143376 AGAAACCCGAAGACGAATAAAGA 57.857 39.130 0.00 0.00 42.66 2.52
842 2506 4.928020 AGAAACCCGAAGACGAATAAAGAC 59.072 41.667 0.00 0.00 42.66 3.01
848 2512 6.875195 ACCCGAAGACGAATAAAGACAAAATA 59.125 34.615 0.00 0.00 42.66 1.40
902 2566 1.663161 GCAAGCCGAAAACCGAAAGAG 60.663 52.381 0.00 0.00 41.76 2.85
923 2587 2.418884 GCAAAACCGGGAGAAAAACCAA 60.419 45.455 6.32 0.00 0.00 3.67
975 2639 1.677633 TCGCCATGTCGAGACCTGA 60.678 57.895 9.55 0.00 34.09 3.86
1180 2870 2.638363 GTTCAAGAAGTGAGTACCCCCT 59.362 50.000 0.00 0.00 37.61 4.79
1181 2871 2.986050 TCAAGAAGTGAGTACCCCCTT 58.014 47.619 0.00 0.00 0.00 3.95
1184 2874 0.910338 GAAGTGAGTACCCCCTTCCC 59.090 60.000 5.22 0.00 0.00 3.97
1207 2897 2.669240 CCCCTCTCCGTCCAAACC 59.331 66.667 0.00 0.00 0.00 3.27
1208 2898 2.669240 CCCTCTCCGTCCAAACCC 59.331 66.667 0.00 0.00 0.00 4.11
1209 2899 2.264794 CCTCTCCGTCCAAACCCG 59.735 66.667 0.00 0.00 0.00 5.28
1210 2900 2.580601 CCTCTCCGTCCAAACCCGT 61.581 63.158 0.00 0.00 0.00 5.28
1211 2901 1.252904 CCTCTCCGTCCAAACCCGTA 61.253 60.000 0.00 0.00 0.00 4.02
1212 2902 0.108945 CTCTCCGTCCAAACCCGTAC 60.109 60.000 0.00 0.00 0.00 3.67
1213 2903 1.444895 CTCCGTCCAAACCCGTACG 60.445 63.158 8.69 8.69 35.20 3.67
1214 2904 3.113979 CCGTCCAAACCCGTACGC 61.114 66.667 10.49 0.00 34.13 4.42
1215 2905 3.113979 CGTCCAAACCCGTACGCC 61.114 66.667 10.49 0.00 0.00 5.68
1216 2906 2.344872 GTCCAAACCCGTACGCCT 59.655 61.111 10.49 0.00 0.00 5.52
1217 2907 2.030958 GTCCAAACCCGTACGCCTG 61.031 63.158 10.49 2.81 0.00 4.85
1218 2908 2.208619 TCCAAACCCGTACGCCTGA 61.209 57.895 10.49 0.00 0.00 3.86
1219 2909 2.030958 CCAAACCCGTACGCCTGAC 61.031 63.158 10.49 0.00 0.00 3.51
1239 2929 1.805945 GCGGCCAAGTAGACGAGTG 60.806 63.158 2.24 0.00 0.00 3.51
1345 3220 1.731720 CCTTGCAAGCACTAGTCTCC 58.268 55.000 21.43 0.00 0.00 3.71
1347 3222 1.002430 CTTGCAAGCACTAGTCTCCCA 59.998 52.381 14.65 0.00 0.00 4.37
1349 3224 1.270839 TGCAAGCACTAGTCTCCCAAC 60.271 52.381 0.00 0.00 0.00 3.77
1352 3227 0.610687 AGCACTAGTCTCCCAACTGC 59.389 55.000 0.00 0.00 0.00 4.40
1353 3228 0.321671 GCACTAGTCTCCCAACTGCA 59.678 55.000 0.00 0.00 0.00 4.41
1354 3229 1.941668 GCACTAGTCTCCCAACTGCAC 60.942 57.143 0.00 0.00 0.00 4.57
1355 3230 0.603569 ACTAGTCTCCCAACTGCACG 59.396 55.000 0.00 0.00 0.00 5.34
1356 3231 0.737715 CTAGTCTCCCAACTGCACGC 60.738 60.000 0.00 0.00 0.00 5.34
1357 3232 1.185618 TAGTCTCCCAACTGCACGCT 61.186 55.000 0.00 0.00 0.00 5.07
1358 3233 2.031012 TCTCCCAACTGCACGCTG 59.969 61.111 0.00 0.00 0.00 5.18
1359 3234 3.730761 CTCCCAACTGCACGCTGC 61.731 66.667 3.44 3.44 45.29 5.25
1422 3409 2.675658 AATTGTGTACCCTGCCAAGT 57.324 45.000 0.00 0.00 0.00 3.16
1559 3548 0.395311 TCGCCGAGGAGGTTATGTCT 60.395 55.000 0.00 0.00 43.70 3.41
1598 3590 8.628630 AGCCCTCTCTATTTATTATCTTTTGC 57.371 34.615 0.00 0.00 0.00 3.68
1607 3599 5.499139 TTATTATCTTTTGCTTCGGCTGG 57.501 39.130 0.00 0.00 42.37 4.85
1628 3620 1.691434 GGACCCTGCTATCTTCTCCTG 59.309 57.143 0.00 0.00 0.00 3.86
1629 3621 1.691434 GACCCTGCTATCTTCTCCTGG 59.309 57.143 0.00 0.00 0.00 4.45
1630 3622 1.055040 CCCTGCTATCTTCTCCTGGG 58.945 60.000 0.00 0.00 0.00 4.45
1631 3623 1.694048 CCCTGCTATCTTCTCCTGGGT 60.694 57.143 0.00 0.00 33.30 4.51
1641 3636 7.202011 GCTATCTTCTCCTGGGTTATACTGAAA 60.202 40.741 0.00 0.00 0.00 2.69
1653 3648 9.084533 TGGGTTATACTGAAATTAGCAAGTTTT 57.915 29.630 0.00 0.00 0.00 2.43
1772 3767 6.827251 TCTTTCTGATTCAGCTTGCTTGATAT 59.173 34.615 8.89 0.00 0.00 1.63
1773 3768 7.989170 TCTTTCTGATTCAGCTTGCTTGATATA 59.011 33.333 8.89 0.00 0.00 0.86
1852 3855 0.108186 CCGGTGCTGCTTCTGACATA 60.108 55.000 0.00 0.00 0.00 2.29
1854 3857 1.373570 GGTGCTGCTTCTGACATACC 58.626 55.000 0.00 0.00 0.00 2.73
1947 3951 7.976135 ATTGCTGGTAGATTAGATTGATGAC 57.024 36.000 0.00 0.00 0.00 3.06
1960 3964 9.606631 ATTAGATTGATGACCAAAGACTACTTC 57.393 33.333 0.00 0.00 38.43 3.01
1962 3966 7.102346 AGATTGATGACCAAAGACTACTTCAG 58.898 38.462 0.00 0.00 38.43 3.02
1963 3967 4.569943 TGATGACCAAAGACTACTTCAGC 58.430 43.478 0.00 0.00 35.05 4.26
1964 3968 4.284490 TGATGACCAAAGACTACTTCAGCT 59.716 41.667 0.00 0.00 35.05 4.24
1965 3969 4.689612 TGACCAAAGACTACTTCAGCTT 57.310 40.909 0.00 0.00 35.05 3.74
1966 3970 5.036117 TGACCAAAGACTACTTCAGCTTT 57.964 39.130 0.00 0.00 35.05 3.51
1967 3971 5.437060 TGACCAAAGACTACTTCAGCTTTT 58.563 37.500 0.00 0.00 35.05 2.27
1968 3972 6.588204 TGACCAAAGACTACTTCAGCTTTTA 58.412 36.000 0.00 0.00 35.05 1.52
1969 3973 7.224297 TGACCAAAGACTACTTCAGCTTTTAT 58.776 34.615 0.00 0.00 35.05 1.40
1970 3974 7.719633 TGACCAAAGACTACTTCAGCTTTTATT 59.280 33.333 0.00 0.00 35.05 1.40
1971 3975 7.875971 ACCAAAGACTACTTCAGCTTTTATTG 58.124 34.615 0.00 0.00 35.05 1.90
1972 3976 7.040409 ACCAAAGACTACTTCAGCTTTTATTGG 60.040 37.037 0.00 0.00 35.05 3.16
1973 3977 6.502136 AAGACTACTTCAGCTTTTATTGGC 57.498 37.500 0.00 0.00 0.00 4.52
1974 3978 5.560724 AGACTACTTCAGCTTTTATTGGCA 58.439 37.500 0.00 0.00 0.00 4.92
1975 3979 6.003950 AGACTACTTCAGCTTTTATTGGCAA 58.996 36.000 0.68 0.68 0.00 4.52
1976 3980 6.150140 AGACTACTTCAGCTTTTATTGGCAAG 59.850 38.462 5.96 0.00 0.00 4.01
1977 3981 6.003950 ACTACTTCAGCTTTTATTGGCAAGA 58.996 36.000 5.96 0.00 0.00 3.02
1982 3986 6.100404 TCAGCTTTTATTGGCAAGATTGTT 57.900 33.333 5.96 0.00 0.00 2.83
1989 3993 6.832520 TTATTGGCAAGATTGTTGCTTCTA 57.167 33.333 16.93 4.90 44.36 2.10
2080 4084 2.289694 CCCACTCTTCTTCAACATCCGT 60.290 50.000 0.00 0.00 0.00 4.69
2133 4137 9.007901 CCTTCTTCATCAGTGTAATTTTCTTCT 57.992 33.333 0.00 0.00 0.00 2.85
2137 4141 8.553459 TTCATCAGTGTAATTTTCTTCTCTCC 57.447 34.615 0.00 0.00 0.00 3.71
2138 4142 6.813649 TCATCAGTGTAATTTTCTTCTCTCCG 59.186 38.462 0.00 0.00 0.00 4.63
2166 4170 2.180204 GGCATGCCGTCGCTACATT 61.180 57.895 23.48 0.00 35.36 2.71
2179 4186 3.516300 TCGCTACATTTGTTTCTCCCCTA 59.484 43.478 0.00 0.00 0.00 3.53
2683 4782 9.796120 TTTAAAAACTTCAGTATGTTCCAAGTG 57.204 29.630 0.00 0.00 37.40 3.16
2684 4783 6.391227 AAAACTTCAGTATGTTCCAAGTGG 57.609 37.500 0.00 0.00 37.40 4.00
2685 4784 4.974645 ACTTCAGTATGTTCCAAGTGGA 57.025 40.909 0.00 0.00 38.75 4.02
2686 4785 4.642429 ACTTCAGTATGTTCCAAGTGGAC 58.358 43.478 0.00 0.00 38.51 4.02
2687 4786 4.102524 ACTTCAGTATGTTCCAAGTGGACA 59.897 41.667 0.00 2.57 38.51 4.02
2688 4787 4.271696 TCAGTATGTTCCAAGTGGACAG 57.728 45.455 0.00 0.00 38.51 3.51
2689 4788 3.901222 TCAGTATGTTCCAAGTGGACAGA 59.099 43.478 0.00 0.00 38.51 3.41
2690 4789 4.532126 TCAGTATGTTCCAAGTGGACAGAT 59.468 41.667 0.00 0.00 38.51 2.90
2691 4790 5.719563 TCAGTATGTTCCAAGTGGACAGATA 59.280 40.000 0.00 0.00 38.51 1.98
2692 4791 6.384015 TCAGTATGTTCCAAGTGGACAGATAT 59.616 38.462 0.00 0.00 38.51 1.63
2693 4792 7.563556 TCAGTATGTTCCAAGTGGACAGATATA 59.436 37.037 0.00 0.00 38.51 0.86
2694 4793 8.204160 CAGTATGTTCCAAGTGGACAGATATAA 58.796 37.037 0.00 0.00 45.39 0.98
2695 4794 8.938883 AGTATGTTCCAAGTGGACAGATATAAT 58.061 33.333 0.00 0.00 45.39 1.28
2698 4797 7.217200 TGTTCCAAGTGGACAGATATAATAGC 58.783 38.462 0.00 0.00 45.39 2.97
2699 4798 6.994421 TCCAAGTGGACAGATATAATAGCA 57.006 37.500 0.00 0.00 39.78 3.49
2700 4799 6.759272 TCCAAGTGGACAGATATAATAGCAC 58.241 40.000 0.00 0.00 39.78 4.40
2701 4800 6.326323 TCCAAGTGGACAGATATAATAGCACA 59.674 38.462 0.00 0.00 39.78 4.57
2702 4801 7.016563 TCCAAGTGGACAGATATAATAGCACAT 59.983 37.037 0.00 0.00 39.78 3.21
2703 4802 8.314021 CCAAGTGGACAGATATAATAGCACATA 58.686 37.037 0.00 0.00 37.39 2.29
2704 4803 9.881649 CAAGTGGACAGATATAATAGCACATAT 57.118 33.333 0.00 0.00 0.00 1.78
2706 4805 9.259832 AGTGGACAGATATAATAGCACATATCA 57.740 33.333 0.00 0.00 36.84 2.15
2707 4806 9.875691 GTGGACAGATATAATAGCACATATCAA 57.124 33.333 0.00 0.00 36.84 2.57
3051 5150 9.008965 AGTAGACTGTCATATCTAGCAACATAG 57.991 37.037 10.88 0.00 0.00 2.23
3251 5358 9.838339 ACCACCAGACTAATTATTTATCTCTTG 57.162 33.333 0.00 0.00 0.00 3.02
3492 5599 7.838884 TGCATCCATTTTCATCAATTTCTACA 58.161 30.769 0.00 0.00 0.00 2.74
3509 5616 4.487948 TCTACAACAAGTATTTCCGGACG 58.512 43.478 1.83 0.00 30.93 4.79
3551 5658 2.257353 ACCTTGCGCTCATGGTTTC 58.743 52.632 9.73 0.00 45.30 2.78
3723 5843 4.878397 GCAGAACCTTATGCAGATGTACTT 59.122 41.667 0.00 0.00 44.32 2.24
3776 5897 9.458727 CATCCCATAATTCTTTGCTAGTATCAT 57.541 33.333 0.00 0.00 0.00 2.45
3792 5913 1.630223 TCATGTCTTGCATTTGGCCA 58.370 45.000 0.00 0.00 43.89 5.36
3810 5931 2.160205 CCATGGATAATGCTGCTCCTG 58.840 52.381 5.56 0.56 34.67 3.86
3917 6038 2.835156 ACTCTCTGCTTTTCCCTCTACC 59.165 50.000 0.00 0.00 0.00 3.18
3918 6039 3.103742 CTCTCTGCTTTTCCCTCTACCT 58.896 50.000 0.00 0.00 0.00 3.08
3919 6040 3.517500 CTCTCTGCTTTTCCCTCTACCTT 59.482 47.826 0.00 0.00 0.00 3.50
3920 6041 4.684724 TCTCTGCTTTTCCCTCTACCTTA 58.315 43.478 0.00 0.00 0.00 2.69
3921 6042 4.712337 TCTCTGCTTTTCCCTCTACCTTAG 59.288 45.833 0.00 0.00 0.00 2.18
3922 6043 4.684724 TCTGCTTTTCCCTCTACCTTAGA 58.315 43.478 0.00 0.00 0.00 2.10
3938 6059 3.805267 GAGCATCTCCAACAGGCG 58.195 61.111 0.00 0.00 0.00 5.52
3939 6060 2.437359 AGCATCTCCAACAGGCGC 60.437 61.111 0.00 0.00 0.00 6.53
3940 6061 3.512516 GCATCTCCAACAGGCGCC 61.513 66.667 21.89 21.89 0.00 6.53
3941 6062 2.825836 CATCTCCAACAGGCGCCC 60.826 66.667 26.15 5.07 0.00 6.13
3942 6063 3.329889 ATCTCCAACAGGCGCCCA 61.330 61.111 26.15 0.00 0.00 5.36
3943 6064 2.905996 ATCTCCAACAGGCGCCCAA 61.906 57.895 26.15 0.88 0.00 4.12
3944 6065 2.424842 ATCTCCAACAGGCGCCCAAA 62.425 55.000 26.15 1.70 0.00 3.28
3945 6066 2.123683 TCCAACAGGCGCCCAAAA 60.124 55.556 26.15 0.41 0.00 2.44
3946 6067 1.743321 CTCCAACAGGCGCCCAAAAA 61.743 55.000 26.15 3.57 0.00 1.94
3947 6068 1.300853 CCAACAGGCGCCCAAAAAG 60.301 57.895 26.15 8.61 0.00 2.27
3948 6069 1.739049 CAACAGGCGCCCAAAAAGA 59.261 52.632 26.15 0.00 0.00 2.52
3949 6070 0.318955 CAACAGGCGCCCAAAAAGAG 60.319 55.000 26.15 5.50 0.00 2.85
3950 6071 2.087462 AACAGGCGCCCAAAAAGAGC 62.087 55.000 26.15 0.00 0.00 4.09
3951 6072 2.116125 AGGCGCCCAAAAAGAGCT 59.884 55.556 26.15 0.00 0.00 4.09
3952 6073 1.973812 AGGCGCCCAAAAAGAGCTC 60.974 57.895 26.15 5.27 0.00 4.09
3953 6074 2.568612 GCGCCCAAAAAGAGCTCC 59.431 61.111 10.93 0.00 0.00 4.70
3954 6075 2.870372 CGCCCAAAAAGAGCTCCG 59.130 61.111 10.93 0.00 0.00 4.63
3955 6076 2.568612 GCCCAAAAAGAGCTCCGC 59.431 61.111 10.93 0.00 0.00 5.54
3956 6077 2.870372 CCCAAAAAGAGCTCCGCG 59.130 61.111 10.93 0.00 0.00 6.46
3957 6078 2.176792 CCAAAAAGAGCTCCGCGC 59.823 61.111 10.93 0.00 39.57 6.86
3958 6079 2.616330 CCAAAAAGAGCTCCGCGCA 61.616 57.895 10.93 0.00 42.61 6.09
3959 6080 1.441016 CAAAAAGAGCTCCGCGCAC 60.441 57.895 10.93 0.00 42.61 5.34
3960 6081 1.598130 AAAAAGAGCTCCGCGCACT 60.598 52.632 10.93 0.00 41.53 4.40
3961 6082 0.320421 AAAAAGAGCTCCGCGCACTA 60.320 50.000 10.93 0.00 38.68 2.74
3962 6083 0.320421 AAAAGAGCTCCGCGCACTAA 60.320 50.000 10.93 0.00 38.68 2.24
3963 6084 0.320421 AAAGAGCTCCGCGCACTAAA 60.320 50.000 10.93 0.00 38.68 1.85
3964 6085 0.320421 AAGAGCTCCGCGCACTAAAA 60.320 50.000 10.93 0.00 38.68 1.52
3965 6086 0.737715 AGAGCTCCGCGCACTAAAAG 60.738 55.000 10.93 0.00 42.61 2.27
3966 6087 1.004918 AGCTCCGCGCACTAAAAGT 60.005 52.632 8.75 0.00 42.61 2.66
3967 6088 0.602905 AGCTCCGCGCACTAAAAGTT 60.603 50.000 8.75 0.00 42.61 2.66
3968 6089 0.237498 GCTCCGCGCACTAAAAGTTT 59.763 50.000 8.75 0.00 38.92 2.66
3969 6090 1.950472 CTCCGCGCACTAAAAGTTTG 58.050 50.000 8.75 0.00 0.00 2.93
3970 6091 1.263217 CTCCGCGCACTAAAAGTTTGT 59.737 47.619 8.75 0.00 0.00 2.83
3971 6092 1.671845 TCCGCGCACTAAAAGTTTGTT 59.328 42.857 8.75 0.00 0.00 2.83
3972 6093 2.097791 TCCGCGCACTAAAAGTTTGTTT 59.902 40.909 8.75 0.00 0.00 2.83
3973 6094 2.855370 CCGCGCACTAAAAGTTTGTTTT 59.145 40.909 8.75 0.00 0.00 2.43
3974 6095 3.304826 CCGCGCACTAAAAGTTTGTTTTT 59.695 39.130 8.75 0.00 34.78 1.94
3989 6110 3.291383 TTTTTGGGCGCCGGACAG 61.291 61.111 22.54 0.00 0.00 3.51
3999 6120 3.385384 CCGGACAGCTCCAGCAGA 61.385 66.667 0.00 0.00 45.16 4.26
4000 6121 2.659016 CGGACAGCTCCAGCAGAA 59.341 61.111 0.48 0.00 45.16 3.02
4001 6122 1.447489 CGGACAGCTCCAGCAGAAG 60.447 63.158 0.48 0.00 45.16 2.85
4002 6123 1.744741 GGACAGCTCCAGCAGAAGC 60.745 63.158 0.48 0.00 45.16 3.86
4022 6143 4.868581 GCTGTAGCGCTAAAAGTTTTTG 57.131 40.909 20.73 5.79 0.00 2.44
4023 6144 3.668656 GCTGTAGCGCTAAAAGTTTTTGG 59.331 43.478 20.73 0.00 0.00 3.28
4024 6145 4.226761 CTGTAGCGCTAAAAGTTTTTGGG 58.773 43.478 20.73 18.10 0.00 4.12
4025 6146 2.148916 AGCGCTAAAAGTTTTTGGGC 57.851 45.000 30.39 30.39 37.38 5.36
4026 6147 0.781787 GCGCTAAAAGTTTTTGGGCG 59.218 50.000 26.58 25.61 46.09 6.13
4027 6148 0.781787 CGCTAAAAGTTTTTGGGCGC 59.218 50.000 20.89 0.00 42.00 6.53
4028 6149 0.781787 GCTAAAAGTTTTTGGGCGCG 59.218 50.000 6.10 0.00 0.00 6.86
4029 6150 0.781787 CTAAAAGTTTTTGGGCGCGC 59.218 50.000 25.94 25.94 0.00 6.86
4030 6151 0.935366 TAAAAGTTTTTGGGCGCGCG 60.935 50.000 28.44 28.44 0.00 6.86
4047 6168 2.828784 CGCTGAAAAACGCTATCGC 58.171 52.632 0.00 0.00 39.84 4.58
4066 6187 2.332514 CGCAGCATATTTGGGGCG 59.667 61.111 0.00 0.00 38.45 6.13
4067 6188 2.028043 GCAGCATATTTGGGGCGC 59.972 61.111 0.00 0.00 0.00 6.53
4068 6189 2.730094 CAGCATATTTGGGGCGCC 59.270 61.111 21.18 21.18 0.00 6.53
4069 6190 2.906897 AGCATATTTGGGGCGCCG 60.907 61.111 22.54 4.62 0.00 6.46
4070 6191 3.977244 GCATATTTGGGGCGCCGG 61.977 66.667 22.54 0.00 0.00 6.13
4071 6192 2.203280 CATATTTGGGGCGCCGGA 60.203 61.111 22.54 6.05 0.00 5.14
4072 6193 1.603455 CATATTTGGGGCGCCGGAT 60.603 57.895 22.54 13.54 0.00 4.18
4073 6194 1.152830 ATATTTGGGGCGCCGGATT 59.847 52.632 22.54 6.55 0.00 3.01
4074 6195 1.178534 ATATTTGGGGCGCCGGATTG 61.179 55.000 22.54 0.00 0.00 2.67
4091 6212 2.800746 GCGCGCGCTTCACAATTT 60.801 55.556 44.38 0.00 38.26 1.82
4092 6213 3.046460 GCGCGCGCTTCACAATTTG 62.046 57.895 44.38 10.35 38.26 2.32
4093 6214 2.765150 GCGCGCTTCACAATTTGC 59.235 55.556 26.67 0.00 0.00 3.68
4094 6215 2.015627 GCGCGCTTCACAATTTGCA 61.016 52.632 26.67 0.00 0.00 4.08
4095 6216 1.768603 CGCGCTTCACAATTTGCAC 59.231 52.632 5.56 0.00 0.00 4.57
4096 6217 0.661187 CGCGCTTCACAATTTGCACT 60.661 50.000 5.56 0.00 0.00 4.40
4097 6218 0.780002 GCGCTTCACAATTTGCACTG 59.220 50.000 0.00 0.00 0.00 3.66
4098 6219 1.865248 GCGCTTCACAATTTGCACTGT 60.865 47.619 0.00 0.00 0.00 3.55
4099 6220 2.046313 CGCTTCACAATTTGCACTGTC 58.954 47.619 0.00 0.00 0.00 3.51
4100 6221 2.287188 CGCTTCACAATTTGCACTGTCT 60.287 45.455 0.00 0.00 0.00 3.41
4101 6222 3.047796 GCTTCACAATTTGCACTGTCTG 58.952 45.455 0.00 0.00 0.00 3.51
4110 6231 3.575399 GCACTGTCTGCTTTTTGGG 57.425 52.632 0.00 0.00 43.33 4.12
4111 6232 0.598419 GCACTGTCTGCTTTTTGGGC 60.598 55.000 0.00 0.00 43.33 5.36
4112 6233 0.318107 CACTGTCTGCTTTTTGGGCG 60.318 55.000 0.00 0.00 0.00 6.13
4113 6234 1.372128 CTGTCTGCTTTTTGGGCGC 60.372 57.895 0.00 0.00 0.00 6.53
4114 6235 2.429069 GTCTGCTTTTTGGGCGCG 60.429 61.111 0.00 0.00 0.00 6.86
4115 6236 4.341502 TCTGCTTTTTGGGCGCGC 62.342 61.111 25.94 25.94 0.00 6.86
4119 6240 2.656973 CTTTTTGGGCGCGCGTTT 60.657 55.556 32.35 0.00 0.00 3.60
4120 6241 2.202756 TTTTTGGGCGCGCGTTTT 60.203 50.000 32.35 0.00 0.00 2.43
4121 6242 1.757346 CTTTTTGGGCGCGCGTTTTT 61.757 50.000 32.35 0.00 0.00 1.94
4122 6243 2.025359 TTTTTGGGCGCGCGTTTTTG 62.025 50.000 32.35 1.79 0.00 2.44
4123 6244 4.933064 TTGGGCGCGCGTTTTTGG 62.933 61.111 32.35 0.92 0.00 3.28
4130 6251 2.426752 CGCGTTTTTGGGCGTCTG 60.427 61.111 0.00 0.00 46.79 3.51
4131 6252 2.729491 GCGTTTTTGGGCGTCTGC 60.729 61.111 0.00 0.00 41.71 4.26
4132 6253 3.030652 CGTTTTTGGGCGTCTGCT 58.969 55.556 0.00 0.00 42.25 4.24
4133 6254 1.847890 GCGTTTTTGGGCGTCTGCTA 61.848 55.000 0.00 0.00 42.25 3.49
4134 6255 0.589223 CGTTTTTGGGCGTCTGCTAA 59.411 50.000 0.00 0.00 42.25 3.09
4135 6256 1.002251 CGTTTTTGGGCGTCTGCTAAA 60.002 47.619 0.00 0.00 42.25 1.85
4136 6257 2.661594 GTTTTTGGGCGTCTGCTAAAG 58.338 47.619 0.00 0.00 42.25 1.85
4137 6258 0.596082 TTTTGGGCGTCTGCTAAAGC 59.404 50.000 0.00 0.00 42.25 3.51
4149 6270 2.724977 GCTAAAGCAAAGTTGGTCCC 57.275 50.000 0.00 0.00 41.59 4.46
4150 6271 1.068541 GCTAAAGCAAAGTTGGTCCCG 60.069 52.381 0.00 0.00 41.59 5.14
4151 6272 2.500229 CTAAAGCAAAGTTGGTCCCGA 58.500 47.619 0.00 0.00 38.04 5.14
4152 6273 1.029681 AAAGCAAAGTTGGTCCCGAC 58.970 50.000 0.00 0.00 38.04 4.79
4153 6274 1.164041 AAGCAAAGTTGGTCCCGACG 61.164 55.000 0.00 0.00 38.04 5.12
4154 6275 2.943653 CAAAGTTGGTCCCGACGC 59.056 61.111 0.00 0.00 35.57 5.19
4155 6276 1.890041 CAAAGTTGGTCCCGACGCA 60.890 57.895 0.00 0.00 35.57 5.24
4156 6277 1.072505 AAAGTTGGTCCCGACGCAT 59.927 52.632 0.00 0.00 35.57 4.73
4157 6278 0.536460 AAAGTTGGTCCCGACGCATT 60.536 50.000 0.00 0.00 35.57 3.56
4158 6279 0.322322 AAGTTGGTCCCGACGCATTA 59.678 50.000 0.00 0.00 35.57 1.90
4159 6280 0.322322 AGTTGGTCCCGACGCATTAA 59.678 50.000 0.00 0.00 35.57 1.40
4160 6281 1.158434 GTTGGTCCCGACGCATTAAA 58.842 50.000 0.00 0.00 0.00 1.52
4161 6282 1.536331 GTTGGTCCCGACGCATTAAAA 59.464 47.619 0.00 0.00 0.00 1.52
4162 6283 1.444836 TGGTCCCGACGCATTAAAAG 58.555 50.000 0.00 0.00 0.00 2.27
4163 6284 1.270947 TGGTCCCGACGCATTAAAAGT 60.271 47.619 0.00 0.00 0.00 2.66
4164 6285 1.129811 GGTCCCGACGCATTAAAAGTG 59.870 52.381 0.00 0.00 0.00 3.16
4165 6286 0.800012 TCCCGACGCATTAAAAGTGC 59.200 50.000 0.00 0.00 39.18 4.40
4166 6287 0.802494 CCCGACGCATTAAAAGTGCT 59.198 50.000 0.00 0.00 40.37 4.40
4167 6288 2.004017 CCCGACGCATTAAAAGTGCTA 58.996 47.619 0.00 0.00 40.37 3.49
4168 6289 2.222953 CCCGACGCATTAAAAGTGCTAC 60.223 50.000 0.00 0.00 40.37 3.58
4169 6290 2.413796 CCGACGCATTAAAAGTGCTACA 59.586 45.455 0.00 0.00 40.37 2.74
4170 6291 3.483574 CCGACGCATTAAAAGTGCTACAG 60.484 47.826 0.00 0.00 40.37 2.74
4171 6292 3.122948 CGACGCATTAAAAGTGCTACAGT 59.877 43.478 0.00 0.00 40.37 3.55
4172 6293 4.394795 GACGCATTAAAAGTGCTACAGTG 58.605 43.478 0.00 0.00 40.37 3.66
4173 6294 3.188460 ACGCATTAAAAGTGCTACAGTGG 59.812 43.478 0.00 0.00 40.37 4.00
4174 6295 3.501950 GCATTAAAAGTGCTACAGTGGC 58.498 45.455 0.99 0.99 39.45 5.01
4175 6296 3.747193 CATTAAAAGTGCTACAGTGGCG 58.253 45.455 4.21 0.00 0.00 5.69
4176 6297 2.536761 TAAAAGTGCTACAGTGGCGT 57.463 45.000 4.21 0.00 0.00 5.68
4177 6298 0.944386 AAAAGTGCTACAGTGGCGTG 59.056 50.000 4.21 0.00 0.00 5.34
4178 6299 1.507141 AAAGTGCTACAGTGGCGTGC 61.507 55.000 4.21 0.00 0.00 5.34
4179 6300 3.423154 GTGCTACAGTGGCGTGCC 61.423 66.667 3.30 3.30 0.00 5.01
4180 6301 3.934962 TGCTACAGTGGCGTGCCA 61.935 61.111 10.06 10.06 45.02 4.92
4188 6309 4.066694 TGGCGTGCCATAACGTTT 57.933 50.000 10.06 0.00 45.32 3.60
4189 6310 3.228499 TGGCGTGCCATAACGTTTA 57.772 47.368 10.06 0.00 45.32 2.01
4190 6311 1.740297 TGGCGTGCCATAACGTTTAT 58.260 45.000 10.06 0.00 45.32 1.40
4191 6312 2.085320 TGGCGTGCCATAACGTTTATT 58.915 42.857 10.06 0.00 45.32 1.40
4192 6313 2.159503 TGGCGTGCCATAACGTTTATTG 60.160 45.455 10.06 2.24 45.32 1.90
4193 6314 2.446282 GCGTGCCATAACGTTTATTGG 58.554 47.619 5.91 12.77 45.32 3.16
4194 6315 2.793237 GCGTGCCATAACGTTTATTGGG 60.793 50.000 19.84 11.07 45.32 4.12
4195 6316 2.793237 CGTGCCATAACGTTTATTGGGC 60.793 50.000 19.84 18.17 38.74 5.36
4196 6317 1.402259 TGCCATAACGTTTATTGGGCG 59.598 47.619 19.84 0.00 42.71 6.13
4197 6318 1.862411 GCCATAACGTTTATTGGGCGC 60.862 52.381 19.84 0.00 0.00 6.53
4198 6319 1.595976 CCATAACGTTTATTGGGCGCG 60.596 52.381 5.91 0.00 0.00 6.86
4199 6320 0.658897 ATAACGTTTATTGGGCGCGG 59.341 50.000 5.91 0.00 0.00 6.46
4200 6321 0.390866 TAACGTTTATTGGGCGCGGA 60.391 50.000 5.91 0.00 0.00 5.54
4201 6322 1.235948 AACGTTTATTGGGCGCGGAA 61.236 50.000 8.83 0.00 0.00 4.30
4202 6323 1.027792 ACGTTTATTGGGCGCGGAAT 61.028 50.000 8.83 4.41 0.00 3.01
4203 6324 0.099791 CGTTTATTGGGCGCGGAATT 59.900 50.000 8.83 0.00 0.00 2.17
4204 6325 1.468395 CGTTTATTGGGCGCGGAATTT 60.468 47.619 8.83 0.00 0.00 1.82
4205 6326 2.612604 GTTTATTGGGCGCGGAATTTT 58.387 42.857 8.83 0.00 0.00 1.82
4206 6327 2.997303 GTTTATTGGGCGCGGAATTTTT 59.003 40.909 8.83 0.00 0.00 1.94
4207 6328 2.285827 TATTGGGCGCGGAATTTTTG 57.714 45.000 8.83 0.00 0.00 2.44
4208 6329 0.320050 ATTGGGCGCGGAATTTTTGT 59.680 45.000 8.83 0.00 0.00 2.83
4209 6330 0.598680 TTGGGCGCGGAATTTTTGTG 60.599 50.000 8.83 0.00 0.00 3.33
4210 6331 2.379634 GGGCGCGGAATTTTTGTGC 61.380 57.895 8.83 3.35 38.36 4.57
4212 6333 3.446839 CGCGGAATTTTTGTGCGG 58.553 55.556 0.00 0.00 44.65 5.69
4213 6334 2.715849 CGCGGAATTTTTGTGCGGC 61.716 57.895 0.00 0.00 44.65 6.53
4214 6335 2.379634 GCGGAATTTTTGTGCGGCC 61.380 57.895 0.00 0.00 0.00 6.13
4215 6336 2.085844 CGGAATTTTTGTGCGGCCG 61.086 57.895 24.05 24.05 0.00 6.13
4216 6337 1.006688 GGAATTTTTGTGCGGCCGT 60.007 52.632 28.70 2.08 0.00 5.68
4217 6338 0.598942 GGAATTTTTGTGCGGCCGTT 60.599 50.000 28.70 10.38 0.00 4.44
4218 6339 0.506506 GAATTTTTGTGCGGCCGTTG 59.493 50.000 28.70 0.00 0.00 4.10
4219 6340 0.878086 AATTTTTGTGCGGCCGTTGG 60.878 50.000 28.70 0.00 0.00 3.77
4220 6341 1.739338 ATTTTTGTGCGGCCGTTGGA 61.739 50.000 28.70 8.23 0.00 3.53
4221 6342 2.343163 TTTTTGTGCGGCCGTTGGAG 62.343 55.000 28.70 0.00 0.00 3.86
4222 6343 3.758973 TTTGTGCGGCCGTTGGAGA 62.759 57.895 28.70 6.06 0.00 3.71
4223 6344 3.545124 TTGTGCGGCCGTTGGAGAT 62.545 57.895 28.70 0.00 0.00 2.75
4224 6345 3.499737 GTGCGGCCGTTGGAGATG 61.500 66.667 28.70 0.00 0.00 2.90
4374 6496 7.336931 TGTTGAAATCTCTGAAAGGGCTTATAC 59.663 37.037 0.00 0.00 30.99 1.47
4396 6519 2.606378 AGAAACGGAGGGAGTAGTTGT 58.394 47.619 0.00 0.00 0.00 3.32
4469 6592 0.257039 AGATGGTCATTGACAGCCCC 59.743 55.000 18.09 1.43 33.68 5.80
4473 6597 1.133199 TGGTCATTGACAGCCCCTTTT 60.133 47.619 18.09 0.00 33.68 2.27
4474 6598 1.970640 GGTCATTGACAGCCCCTTTTT 59.029 47.619 18.09 0.00 33.68 1.94
4527 6659 2.689073 CTCCTTGGGAGCAGAGGAA 58.311 57.895 0.34 0.00 43.29 3.36
4543 6675 5.395103 GCAGAGGAACAGAGATACAGTTGAT 60.395 44.000 0.00 0.00 0.00 2.57
4547 6679 7.563188 AGAGGAACAGAGATACAGTTGATACAT 59.437 37.037 0.00 0.00 0.00 2.29
4572 6707 7.642071 AACACATGCTATTTTGCTAACTTTG 57.358 32.000 0.00 0.00 0.00 2.77
4634 6769 1.221840 GCCGAGGGAAGCAGAATCA 59.778 57.895 0.00 0.00 0.00 2.57
4635 6770 0.392998 GCCGAGGGAAGCAGAATCAA 60.393 55.000 0.00 0.00 0.00 2.57
4636 6771 1.748591 GCCGAGGGAAGCAGAATCAAT 60.749 52.381 0.00 0.00 0.00 2.57
4637 6772 2.216898 CCGAGGGAAGCAGAATCAATC 58.783 52.381 0.00 0.00 0.00 2.67
4641 6776 1.382522 GGAAGCAGAATCAATCCGCA 58.617 50.000 0.00 0.00 33.67 5.69
4657 6792 1.512996 CGCAGCAAGGCCATATGGAG 61.513 60.000 26.47 12.10 37.39 3.86
4696 6831 0.589223 GTGTCGTTTTCGCATGGGAA 59.411 50.000 20.25 20.25 43.73 3.97
4713 6849 7.645340 CGCATGGGAAAAATCTTAGTTATCTTG 59.355 37.037 3.11 0.00 0.00 3.02
4726 6864 8.107095 TCTTAGTTATCTTGGTTTGGTTATGCT 58.893 33.333 0.00 0.00 0.00 3.79
4755 6893 6.933521 GCTGAGAACCTTGTATGATATGACAT 59.066 38.462 0.00 0.00 0.00 3.06
4759 6897 9.149225 GAGAACCTTGTATGATATGACATCATC 57.851 37.037 3.12 0.00 39.30 2.92
4819 6959 5.713025 AGAACACCATGTTGTTTATGATGC 58.287 37.500 10.20 0.00 41.28 3.91
4909 7056 1.971695 CCGCAACCCCAGAGTTTCC 60.972 63.158 0.00 0.00 0.00 3.13
4913 7060 1.478654 GCAACCCCAGAGTTTCCTGAA 60.479 52.381 0.00 0.00 36.29 3.02
4949 7096 0.035881 CCTCTTGCCACAGAAGCAGA 59.964 55.000 0.00 0.00 42.17 4.26
4951 7098 2.434428 CTCTTGCCACAGAAGCAGAAT 58.566 47.619 0.00 0.00 42.17 2.40
4952 7099 2.419324 CTCTTGCCACAGAAGCAGAATC 59.581 50.000 0.00 0.00 42.17 2.52
4979 7128 9.429359 CTCTGTAATTTCTTGTGACATACTCTT 57.571 33.333 0.00 0.00 0.00 2.85
4995 7144 9.321562 GACATACTCTTTCCGTTCCAAAATATA 57.678 33.333 0.00 0.00 0.00 0.86
4996 7145 9.326413 ACATACTCTTTCCGTTCCAAAATATAG 57.674 33.333 0.00 0.00 0.00 1.31
5044 7193 6.516739 TCAAACTTGTGTATGTTTGACCAA 57.483 33.333 14.65 0.00 46.88 3.67
5188 7762 8.732746 AAACTGTTACACAATATACCTCCATC 57.267 34.615 0.00 0.00 0.00 3.51
5191 7765 6.826668 TGTTACACAATATACCTCCATCTGG 58.173 40.000 0.00 0.00 0.00 3.86
5195 7769 7.872061 ACACAATATACCTCCATCTGGATTA 57.128 36.000 0.00 0.00 44.46 1.75
5196 7770 7.680730 ACACAATATACCTCCATCTGGATTAC 58.319 38.462 0.00 0.00 44.46 1.89
5197 7771 7.514127 ACACAATATACCTCCATCTGGATTACT 59.486 37.037 0.00 0.00 44.46 2.24
5199 7773 8.378565 ACAATATACCTCCATCTGGATTACTTG 58.621 37.037 0.00 5.44 44.46 3.16
5200 7774 8.378565 CAATATACCTCCATCTGGATTACTTGT 58.621 37.037 0.00 0.00 44.46 3.16
5201 7775 4.762289 ACCTCCATCTGGATTACTTGTC 57.238 45.455 0.00 0.00 44.46 3.18
5202 7776 3.133003 ACCTCCATCTGGATTACTTGTCG 59.867 47.826 0.00 0.00 44.46 4.35
5203 7777 3.133003 CCTCCATCTGGATTACTTGTCGT 59.867 47.826 0.00 0.00 44.46 4.34
5204 7778 4.115516 CTCCATCTGGATTACTTGTCGTG 58.884 47.826 0.00 0.00 44.46 4.35
5219 7804 9.863845 TTACTTGTCGTGAAAATAGATGTATCA 57.136 29.630 0.00 0.00 0.00 2.15
5221 7806 9.214957 ACTTGTCGTGAAAATAGATGTATCAAA 57.785 29.630 0.00 0.00 0.00 2.69
5264 7853 6.545504 ACATTCATTTCTCCGATAATTCCG 57.454 37.500 0.00 0.00 0.00 4.30
5285 7874 3.408634 GGACAGACGGAATTTCTCCAAA 58.591 45.455 0.00 0.00 45.74 3.28
5299 7888 4.467198 TCTCCAAAGAGTAATTCCGGAC 57.533 45.455 1.83 0.00 41.26 4.79
5300 7889 3.835978 TCTCCAAAGAGTAATTCCGGACA 59.164 43.478 1.83 0.00 41.26 4.02
5314 7903 2.500098 TCCGGACAGAGGGAGTATTTTG 59.500 50.000 0.00 0.00 0.00 2.44
5325 7914 2.640184 GAGTATTTTGGAACGGAGGGG 58.360 52.381 0.00 0.00 0.00 4.79
5327 7916 0.033894 TATTTTGGAACGGAGGGGGC 60.034 55.000 0.00 0.00 0.00 5.80
5332 7921 2.190578 GAACGGAGGGGGCATGAG 59.809 66.667 0.00 0.00 0.00 2.90
5337 7926 2.191641 GAGGGGGCATGAGCTGAC 59.808 66.667 0.00 0.00 41.70 3.51
5586 8178 7.276218 GCAATTCACAGCAAACACACATAATAT 59.724 33.333 0.00 0.00 0.00 1.28
5607 8199 8.985315 AATATATCCTTCAGAAAACAGCATCA 57.015 30.769 0.00 0.00 0.00 3.07
5787 8379 2.034685 CAGAAAGAGACGGTGTCAGACA 59.965 50.000 8.09 0.00 34.60 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 5.301805 CCATGGCCTAGTAAAATAAACCCAG 59.698 44.000 3.32 0.00 0.00 4.45
73 74 4.752063 ACCTTTTCTTTTAGAAGGCCCAT 58.248 39.130 0.00 0.00 42.92 4.00
150 151 2.537560 GGCATCATCCGGTTCGCTG 61.538 63.158 0.00 0.00 0.00 5.18
302 303 7.763172 AAATGTGCGATGAAAACTGTTTTAA 57.237 28.000 17.70 11.74 31.94 1.52
360 361 2.065512 CCACCATTTTGTTAAAGCCGC 58.934 47.619 0.00 0.00 0.00 6.53
363 364 4.688021 TGTCACCACCATTTTGTTAAAGC 58.312 39.130 0.00 0.00 0.00 3.51
370 371 6.511416 TGTTCTAAATGTCACCACCATTTTG 58.489 36.000 3.97 3.09 41.45 2.44
503 506 1.940613 ACGTGAACCTTTCTGCAGAAC 59.059 47.619 28.46 16.76 33.13 3.01
562 2204 8.388103 ACGCAGACATATTCTTTTACAATGTAC 58.612 33.333 0.00 0.00 31.19 2.90
565 2207 8.604035 ACTACGCAGACATATTCTTTTACAATG 58.396 33.333 0.00 0.00 28.96 2.82
567 2209 8.542497 AACTACGCAGACATATTCTTTTACAA 57.458 30.769 0.00 0.00 28.96 2.41
574 2216 8.997621 TCTTTTAAACTACGCAGACATATTCT 57.002 30.769 0.00 0.00 33.33 2.40
578 2220 8.542497 ACATTCTTTTAAACTACGCAGACATA 57.458 30.769 0.00 0.00 0.00 2.29
583 2225 8.259194 CACAAAACATTCTTTTAAACTACGCAG 58.741 33.333 0.00 0.00 0.00 5.18
587 2229 8.413899 TGGCACAAAACATTCTTTTAAACTAC 57.586 30.769 0.00 0.00 31.92 2.73
634 2276 9.698309 TGAATGCAGGTTAAATATTTTTCGAAA 57.302 25.926 6.47 6.47 0.00 3.46
682 2325 7.499321 ACACGGTGTAATCTTTTCAAATACA 57.501 32.000 12.96 0.00 0.00 2.29
701 2344 9.842444 CAAGTTGAACAATTTTTAAATACACGG 57.158 29.630 0.00 0.00 0.00 4.94
735 2381 9.916397 CATTTCTTTAGATACGCGTAAGATTTT 57.084 29.630 24.55 5.10 43.02 1.82
740 2386 7.374228 TCGTACATTTCTTTAGATACGCGTAAG 59.626 37.037 24.55 17.29 36.30 2.34
751 2397 7.792925 TCAACACACATCGTACATTTCTTTAG 58.207 34.615 0.00 0.00 0.00 1.85
753 2399 6.612247 TCAACACACATCGTACATTTCTTT 57.388 33.333 0.00 0.00 0.00 2.52
755 2401 6.612247 TTTCAACACACATCGTACATTTCT 57.388 33.333 0.00 0.00 0.00 2.52
756 2402 7.431084 AGTTTTTCAACACACATCGTACATTTC 59.569 33.333 0.00 0.00 35.05 2.17
765 2412 7.078228 GGATGTCTAGTTTTTCAACACACATC 58.922 38.462 11.77 11.77 40.54 3.06
773 2420 7.287061 TCTTCAAGGGATGTCTAGTTTTTCAA 58.713 34.615 0.00 0.00 0.00 2.69
791 2438 8.034804 TCTTTGGTTTTCTCCTTTTTCTTCAAG 58.965 33.333 0.00 0.00 0.00 3.02
806 2456 5.001237 TCGGGTTTCTTTCTTTGGTTTTC 57.999 39.130 0.00 0.00 0.00 2.29
810 2460 3.630769 GTCTTCGGGTTTCTTTCTTTGGT 59.369 43.478 0.00 0.00 0.00 3.67
824 2488 5.600908 TTTTGTCTTTATTCGTCTTCGGG 57.399 39.130 0.00 0.00 37.69 5.14
829 2493 8.776470 TCGGTTTTATTTTGTCTTTATTCGTCT 58.224 29.630 0.00 0.00 0.00 4.18
841 2505 6.402875 GCGTATCTTCCTCGGTTTTATTTTGT 60.403 38.462 0.00 0.00 0.00 2.83
842 2506 5.963586 GCGTATCTTCCTCGGTTTTATTTTG 59.036 40.000 0.00 0.00 0.00 2.44
848 2512 2.232941 TCTGCGTATCTTCCTCGGTTTT 59.767 45.455 0.00 0.00 0.00 2.43
902 2566 1.137282 TGGTTTTTCTCCCGGTTTTGC 59.863 47.619 0.00 0.00 0.00 3.68
923 2587 3.326109 CGGTCGCACGGTTTTCTT 58.674 55.556 0.00 0.00 0.00 2.52
975 2639 2.592993 CCGGGACCCACATGTCAGT 61.593 63.158 12.15 0.00 36.97 3.41
1028 2702 0.324830 CGGGAGAGGAGAGAGGGTTT 60.325 60.000 0.00 0.00 0.00 3.27
1143 2833 1.512156 GAACATGGTGAACGGCGGTT 61.512 55.000 13.24 9.69 39.63 4.44
1184 2874 4.862823 GACGGAGAGGGGGAGGGG 62.863 77.778 0.00 0.00 0.00 4.79
1188 2878 1.916777 GTTTGGACGGAGAGGGGGA 60.917 63.158 0.00 0.00 0.00 4.81
1189 2879 2.669240 GTTTGGACGGAGAGGGGG 59.331 66.667 0.00 0.00 0.00 5.40
1193 2883 0.108945 GTACGGGTTTGGACGGAGAG 60.109 60.000 0.00 0.00 0.00 3.20
1214 2904 1.448540 CTACTTGGCCGCTGTCAGG 60.449 63.158 0.00 0.00 0.00 3.86
1215 2905 0.737715 GTCTACTTGGCCGCTGTCAG 60.738 60.000 0.00 0.00 0.00 3.51
1216 2906 1.292223 GTCTACTTGGCCGCTGTCA 59.708 57.895 0.00 0.00 0.00 3.58
1217 2907 1.805945 CGTCTACTTGGCCGCTGTC 60.806 63.158 0.00 0.00 0.00 3.51
1218 2908 2.214181 CTCGTCTACTTGGCCGCTGT 62.214 60.000 0.00 0.00 0.00 4.40
1219 2909 1.517257 CTCGTCTACTTGGCCGCTG 60.517 63.158 0.00 0.00 0.00 5.18
1223 2913 4.913126 CCACTCGTCTACTTGGCC 57.087 61.111 0.00 0.00 0.00 5.36
1239 2929 1.817099 CGCCTCTGAATCCAGTGCC 60.817 63.158 0.00 0.00 41.16 5.01
1267 3138 2.575532 CTCTCTAGCTCTCTCCCACAG 58.424 57.143 0.00 0.00 0.00 3.66
1268 3139 1.214175 CCTCTCTAGCTCTCTCCCACA 59.786 57.143 0.00 0.00 0.00 4.17
1327 3202 1.002430 TGGGAGACTAGTGCTTGCAAG 59.998 52.381 22.44 22.44 0.00 4.01
1331 3206 2.693069 CAGTTGGGAGACTAGTGCTTG 58.307 52.381 0.00 0.00 0.00 4.01
1356 3231 1.310933 AATGGCCAGAGAAAGCGCAG 61.311 55.000 13.05 0.00 0.00 5.18
1357 3232 0.035534 TAATGGCCAGAGAAAGCGCA 60.036 50.000 13.05 0.00 0.00 6.09
1358 3233 0.378610 GTAATGGCCAGAGAAAGCGC 59.621 55.000 13.05 0.00 0.00 5.92
1359 3234 1.017387 GGTAATGGCCAGAGAAAGCG 58.983 55.000 13.05 0.00 0.00 4.68
1360 3235 2.128771 TGGTAATGGCCAGAGAAAGC 57.871 50.000 13.05 4.73 33.97 3.51
1361 3236 3.633986 GGATTGGTAATGGCCAGAGAAAG 59.366 47.826 13.05 0.00 40.01 2.62
1362 3237 3.627237 GGGATTGGTAATGGCCAGAGAAA 60.627 47.826 13.05 2.07 40.01 2.52
1363 3238 2.091885 GGGATTGGTAATGGCCAGAGAA 60.092 50.000 13.05 0.00 40.01 2.87
1364 3239 1.494721 GGGATTGGTAATGGCCAGAGA 59.505 52.381 13.05 0.00 40.01 3.10
1393 3377 4.064388 AGGGTACACAATTTTTGCATTGC 58.936 39.130 0.46 0.46 37.63 3.56
1422 3409 3.694043 TGTCATGGTTAGTGCTTAGCA 57.306 42.857 1.39 1.39 35.60 3.49
1559 3548 4.777896 AGAGAGGGCTATGCGGATATTTTA 59.222 41.667 0.00 0.00 0.00 1.52
1598 3590 4.101448 CAGGGTCCCCAGCCGAAG 62.101 72.222 3.51 0.00 45.84 3.79
1607 3599 1.052617 GGAGAAGATAGCAGGGTCCC 58.947 60.000 0.00 0.00 0.00 4.46
1625 3617 6.828785 ACTTGCTAATTTCAGTATAACCCAGG 59.171 38.462 0.00 0.00 0.00 4.45
1628 3620 9.923143 AAAAACTTGCTAATTTCAGTATAACCC 57.077 29.630 0.00 0.00 0.00 4.11
1653 3648 2.441750 AGGAGAGGGTACTGCAACAAAA 59.558 45.455 0.00 0.00 0.00 2.44
1702 3697 2.699954 ACAATCATCGGCGACTTCTTT 58.300 42.857 13.76 0.00 0.00 2.52
1773 3768 9.965824 CAATAAATAAAGGTTGTTCAACAGACT 57.034 29.630 15.89 3.29 0.00 3.24
1852 3855 1.623811 ACAGCCAATGTAACTCTCGGT 59.376 47.619 0.00 0.00 41.60 4.69
1854 3857 3.125316 GGAAACAGCCAATGTAACTCTCG 59.875 47.826 0.00 0.00 43.00 4.04
1897 3901 2.298610 GCAACCTAACCTATTCTGGCC 58.701 52.381 0.00 0.00 0.00 5.36
1947 3951 7.308435 CCAATAAAAGCTGAAGTAGTCTTTGG 58.692 38.462 0.00 0.00 34.89 3.28
1960 3964 5.390145 GCAACAATCTTGCCAATAAAAGCTG 60.390 40.000 0.00 0.00 39.38 4.24
1962 3966 4.692155 AGCAACAATCTTGCCAATAAAAGC 59.308 37.500 1.45 0.00 45.98 3.51
1963 3967 6.647895 AGAAGCAACAATCTTGCCAATAAAAG 59.352 34.615 1.45 0.00 45.98 2.27
1964 3968 6.523840 AGAAGCAACAATCTTGCCAATAAAA 58.476 32.000 1.45 0.00 45.98 1.52
1965 3969 6.100404 AGAAGCAACAATCTTGCCAATAAA 57.900 33.333 1.45 0.00 45.98 1.40
1966 3970 5.726980 AGAAGCAACAATCTTGCCAATAA 57.273 34.783 1.45 0.00 45.98 1.40
1967 3971 5.709631 TGTAGAAGCAACAATCTTGCCAATA 59.290 36.000 1.45 0.00 45.98 1.90
1968 3972 4.523943 TGTAGAAGCAACAATCTTGCCAAT 59.476 37.500 1.45 0.00 45.98 3.16
1969 3973 3.888323 TGTAGAAGCAACAATCTTGCCAA 59.112 39.130 1.45 0.00 45.98 4.52
1970 3974 3.485394 TGTAGAAGCAACAATCTTGCCA 58.515 40.909 1.45 0.00 45.98 4.92
1971 3975 4.503741 TTGTAGAAGCAACAATCTTGCC 57.496 40.909 1.45 0.00 45.98 4.52
1972 3976 5.762045 TCTTTGTAGAAGCAACAATCTTGC 58.238 37.500 0.00 0.00 45.22 4.01
1973 3977 7.420800 AGTTCTTTGTAGAAGCAACAATCTTG 58.579 34.615 0.00 0.00 40.95 3.02
1974 3978 7.573968 AGTTCTTTGTAGAAGCAACAATCTT 57.426 32.000 0.00 0.00 40.95 2.40
1975 3979 8.677148 TTAGTTCTTTGTAGAAGCAACAATCT 57.323 30.769 0.00 0.00 40.95 2.40
1976 3980 9.334693 CATTAGTTCTTTGTAGAAGCAACAATC 57.665 33.333 0.00 0.00 40.95 2.67
1977 3981 7.809806 GCATTAGTTCTTTGTAGAAGCAACAAT 59.190 33.333 0.00 0.00 40.95 2.71
1982 3986 5.997746 ACTGCATTAGTTCTTTGTAGAAGCA 59.002 36.000 0.00 0.00 40.95 3.91
1989 3993 5.852282 AACCAACTGCATTAGTTCTTTGT 57.148 34.783 0.00 0.00 46.55 2.83
2080 4084 2.653726 GTTGGCATGTATGGACCATCA 58.346 47.619 11.17 9.49 30.85 3.07
2166 4170 3.833650 TGTACGTCATAGGGGAGAAACAA 59.166 43.478 0.00 0.00 0.00 2.83
2328 4395 3.503827 TGATGTTCTGCGTCTACGAAT 57.496 42.857 6.71 0.00 43.02 3.34
2329 4396 3.291809 TTGATGTTCTGCGTCTACGAA 57.708 42.857 6.71 0.00 43.02 3.85
2330 4397 3.291809 TTTGATGTTCTGCGTCTACGA 57.708 42.857 6.71 0.00 43.02 3.43
2331 4398 4.584029 ATTTTGATGTTCTGCGTCTACG 57.416 40.909 0.00 0.00 43.27 3.51
2335 4402 6.775088 TCTTGATATTTTGATGTTCTGCGTC 58.225 36.000 0.00 0.00 0.00 5.19
2541 4608 3.318313 TCAGAGAAGACAAGAAAGGGGT 58.682 45.455 0.00 0.00 0.00 4.95
2676 4775 6.326323 TGTGCTATTATATCTGTCCACTTGGA 59.674 38.462 0.00 0.00 43.08 3.53
2677 4776 6.524734 TGTGCTATTATATCTGTCCACTTGG 58.475 40.000 0.00 0.00 0.00 3.61
2678 4777 9.881649 ATATGTGCTATTATATCTGTCCACTTG 57.118 33.333 0.00 0.00 0.00 3.16
2680 4779 9.259832 TGATATGTGCTATTATATCTGTCCACT 57.740 33.333 0.00 0.00 37.25 4.00
2681 4780 9.875691 TTGATATGTGCTATTATATCTGTCCAC 57.124 33.333 0.00 0.00 37.25 4.02
2695 4794 9.013229 ACAAAACAGAAATCTTGATATGTGCTA 57.987 29.630 0.00 0.00 0.00 3.49
2696 4795 7.889469 ACAAAACAGAAATCTTGATATGTGCT 58.111 30.769 0.00 0.00 0.00 4.40
2697 4796 8.524870 AACAAAACAGAAATCTTGATATGTGC 57.475 30.769 0.00 0.00 0.00 4.57
2702 4801 9.248291 GCTGAAAACAAAACAGAAATCTTGATA 57.752 29.630 0.00 0.00 34.07 2.15
2703 4802 7.765360 TGCTGAAAACAAAACAGAAATCTTGAT 59.235 29.630 0.00 0.00 34.07 2.57
2704 4803 7.095910 TGCTGAAAACAAAACAGAAATCTTGA 58.904 30.769 0.00 0.00 34.07 3.02
2705 4804 7.293402 TGCTGAAAACAAAACAGAAATCTTG 57.707 32.000 0.00 0.00 34.07 3.02
2706 4805 7.011669 CCATGCTGAAAACAAAACAGAAATCTT 59.988 33.333 0.00 0.00 34.07 2.40
2707 4806 6.480981 CCATGCTGAAAACAAAACAGAAATCT 59.519 34.615 0.00 0.00 34.07 2.40
2708 4807 6.293027 CCCATGCTGAAAACAAAACAGAAATC 60.293 38.462 0.00 0.00 34.07 2.17
2709 4808 5.528320 CCCATGCTGAAAACAAAACAGAAAT 59.472 36.000 0.00 0.00 34.07 2.17
2710 4809 4.874966 CCCATGCTGAAAACAAAACAGAAA 59.125 37.500 0.00 0.00 34.07 2.52
2711 4810 4.440880 CCCATGCTGAAAACAAAACAGAA 58.559 39.130 0.00 0.00 34.07 3.02
2712 4811 3.181467 CCCCATGCTGAAAACAAAACAGA 60.181 43.478 0.00 0.00 34.07 3.41
2713 4812 3.132925 CCCCATGCTGAAAACAAAACAG 58.867 45.455 0.00 0.00 35.14 3.16
2714 4813 2.503356 ACCCCATGCTGAAAACAAAACA 59.497 40.909 0.00 0.00 0.00 2.83
2715 4814 2.871633 CACCCCATGCTGAAAACAAAAC 59.128 45.455 0.00 0.00 0.00 2.43
2716 4815 3.191078 CACCCCATGCTGAAAACAAAA 57.809 42.857 0.00 0.00 0.00 2.44
2717 4816 2.906691 CACCCCATGCTGAAAACAAA 57.093 45.000 0.00 0.00 0.00 2.83
2758 4857 4.479158 GGGGGTATTTTGGAATGCAGATA 58.521 43.478 0.00 0.00 30.40 1.98
2790 4889 8.689061 TCTGATCAAATGCAAGCATAAATTAGT 58.311 29.630 8.12 0.00 35.31 2.24
3051 5150 9.573133 AACAAAGACACTAAAATATAGCAATGC 57.427 29.630 0.00 0.00 0.00 3.56
3158 5257 8.648097 GTGTATTAGGATGCATAGTAACGAATG 58.352 37.037 0.00 0.00 30.44 2.67
3492 5599 2.354403 CCTCCGTCCGGAAATACTTGTT 60.354 50.000 5.23 0.00 44.66 2.83
3509 5616 1.623811 TGCTTCACAAGTACTCCCTCC 59.376 52.381 0.00 0.00 0.00 4.30
3613 5733 4.589908 AGGAGACCACCACAAATGTATTC 58.410 43.478 0.00 0.00 0.00 1.75
3776 5897 0.609151 CCATGGCCAAATGCAAGACA 59.391 50.000 10.96 0.00 43.89 3.41
3792 5913 3.870538 TTCAGGAGCAGCATTATCCAT 57.129 42.857 0.00 0.00 35.45 3.41
3810 5931 4.483311 CTTCTGCAAAAGCTCAGGATTTC 58.517 43.478 0.72 0.00 30.20 2.17
3917 6038 2.559440 GCCTGTTGGAGATGCTCTAAG 58.441 52.381 0.00 0.00 31.92 2.18
3918 6039 1.134699 CGCCTGTTGGAGATGCTCTAA 60.135 52.381 0.00 0.00 34.95 2.10
3919 6040 0.461548 CGCCTGTTGGAGATGCTCTA 59.538 55.000 0.00 0.00 34.95 2.43
3920 6041 1.220206 CGCCTGTTGGAGATGCTCT 59.780 57.895 0.00 0.00 34.95 4.09
3921 6042 2.467826 GCGCCTGTTGGAGATGCTC 61.468 63.158 0.00 0.00 34.95 4.26
3922 6043 2.437359 GCGCCTGTTGGAGATGCT 60.437 61.111 0.00 0.00 34.95 3.79
3923 6044 3.512516 GGCGCCTGTTGGAGATGC 61.513 66.667 22.15 0.00 34.95 3.91
3924 6045 2.825836 GGGCGCCTGTTGGAGATG 60.826 66.667 28.56 0.00 34.95 2.90
3925 6046 2.424842 TTTGGGCGCCTGTTGGAGAT 62.425 55.000 28.56 0.00 34.95 2.75
3926 6047 2.632602 TTTTGGGCGCCTGTTGGAGA 62.633 55.000 28.56 1.45 34.95 3.71
3927 6048 1.743321 TTTTTGGGCGCCTGTTGGAG 61.743 55.000 28.56 0.00 36.16 3.86
3928 6049 1.743321 CTTTTTGGGCGCCTGTTGGA 61.743 55.000 28.56 7.57 34.57 3.53
3929 6050 1.300853 CTTTTTGGGCGCCTGTTGG 60.301 57.895 28.56 8.87 0.00 3.77
3930 6051 0.318955 CTCTTTTTGGGCGCCTGTTG 60.319 55.000 28.56 12.02 0.00 3.33
3931 6052 2.041153 CTCTTTTTGGGCGCCTGTT 58.959 52.632 28.56 0.00 0.00 3.16
3932 6053 2.564721 GCTCTTTTTGGGCGCCTGT 61.565 57.895 28.56 0.00 0.00 4.00
3933 6054 2.205243 GAGCTCTTTTTGGGCGCCTG 62.205 60.000 28.56 9.84 0.00 4.85
3934 6055 1.973812 GAGCTCTTTTTGGGCGCCT 60.974 57.895 28.56 0.61 0.00 5.52
3935 6056 2.568612 GAGCTCTTTTTGGGCGCC 59.431 61.111 21.18 21.18 0.00 6.53
3936 6057 2.568612 GGAGCTCTTTTTGGGCGC 59.431 61.111 14.64 0.00 0.00 6.53
3937 6058 2.870372 CGGAGCTCTTTTTGGGCG 59.130 61.111 14.64 1.75 0.00 6.13
3950 6071 1.263217 ACAAACTTTTAGTGCGCGGAG 59.737 47.619 8.83 0.00 0.00 4.63
3951 6072 1.301423 ACAAACTTTTAGTGCGCGGA 58.699 45.000 8.83 0.00 0.00 5.54
3952 6073 2.113910 AACAAACTTTTAGTGCGCGG 57.886 45.000 8.83 0.00 0.00 6.46
3953 6074 4.493074 AAAAACAAACTTTTAGTGCGCG 57.507 36.364 0.00 0.00 0.00 6.86
3972 6093 3.291383 CTGTCCGGCGCCCAAAAA 61.291 61.111 23.46 0.00 0.00 1.94
3984 6105 1.744741 GCTTCTGCTGGAGCTGTCC 60.745 63.158 16.22 0.00 44.24 4.02
3985 6106 3.887783 GCTTCTGCTGGAGCTGTC 58.112 61.111 16.22 0.00 42.66 3.51
3995 6116 1.359848 TTTAGCGCTACAGCTTCTGC 58.640 50.000 18.63 0.00 46.80 4.26
3996 6117 2.996621 ACTTTTAGCGCTACAGCTTCTG 59.003 45.455 18.63 4.43 46.80 3.02
3997 6118 3.320673 ACTTTTAGCGCTACAGCTTCT 57.679 42.857 18.63 0.00 46.80 2.85
3998 6119 4.406001 AAACTTTTAGCGCTACAGCTTC 57.594 40.909 18.63 0.00 46.80 3.86
3999 6120 4.830826 AAAACTTTTAGCGCTACAGCTT 57.169 36.364 18.63 10.81 46.80 3.74
4001 6122 3.668656 CCAAAAACTTTTAGCGCTACAGC 59.331 43.478 18.63 0.00 37.78 4.40
4002 6123 4.226761 CCCAAAAACTTTTAGCGCTACAG 58.773 43.478 18.63 18.01 0.00 2.74
4003 6124 3.551250 GCCCAAAAACTTTTAGCGCTACA 60.551 43.478 18.63 8.18 0.00 2.74
4004 6125 2.984471 GCCCAAAAACTTTTAGCGCTAC 59.016 45.455 18.63 0.00 0.00 3.58
4005 6126 2.350964 CGCCCAAAAACTTTTAGCGCTA 60.351 45.455 14.45 14.45 41.67 4.26
4006 6127 1.601914 CGCCCAAAAACTTTTAGCGCT 60.602 47.619 17.26 17.26 41.67 5.92
4007 6128 0.781787 CGCCCAAAAACTTTTAGCGC 59.218 50.000 14.61 0.00 41.67 5.92
4008 6129 0.781787 GCGCCCAAAAACTTTTAGCG 59.218 50.000 19.34 19.34 46.24 4.26
4009 6130 0.781787 CGCGCCCAAAAACTTTTAGC 59.218 50.000 0.00 0.00 0.00 3.09
4010 6131 0.781787 GCGCGCCCAAAAACTTTTAG 59.218 50.000 23.24 0.00 0.00 1.85
4011 6132 0.935366 CGCGCGCCCAAAAACTTTTA 60.935 50.000 27.72 0.00 0.00 1.52
4012 6133 2.234335 CGCGCGCCCAAAAACTTTT 61.234 52.632 27.72 0.00 0.00 2.27
4013 6134 2.656973 CGCGCGCCCAAAAACTTT 60.657 55.556 27.72 0.00 0.00 2.66
4041 6162 0.439985 AAATATGCTGCGCGCGATAG 59.560 50.000 37.18 29.48 43.27 2.08
4042 6163 0.163574 CAAATATGCTGCGCGCGATA 59.836 50.000 37.18 22.34 43.27 2.92
4043 6164 1.082561 CAAATATGCTGCGCGCGAT 60.083 52.632 37.18 20.72 43.27 4.58
4044 6165 2.324133 CAAATATGCTGCGCGCGA 59.676 55.556 37.18 17.91 43.27 5.87
4045 6166 2.723271 CCAAATATGCTGCGCGCG 60.723 61.111 28.44 28.44 43.27 6.86
4046 6167 2.353839 CCCAAATATGCTGCGCGC 60.354 61.111 27.26 27.26 39.77 6.86
4047 6168 2.332514 CCCCAAATATGCTGCGCG 59.667 61.111 0.00 0.00 0.00 6.86
4048 6169 2.028043 GCCCCAAATATGCTGCGC 59.972 61.111 0.00 0.00 0.00 6.09
4049 6170 2.332514 CGCCCCAAATATGCTGCG 59.667 61.111 0.00 0.00 38.21 5.18
4050 6171 2.028043 GCGCCCCAAATATGCTGC 59.972 61.111 0.00 0.00 0.00 5.25
4051 6172 2.730094 GGCGCCCCAAATATGCTG 59.270 61.111 18.11 0.00 0.00 4.41
4052 6173 2.906897 CGGCGCCCCAAATATGCT 60.907 61.111 23.46 0.00 0.00 3.79
4053 6174 3.977244 CCGGCGCCCCAAATATGC 61.977 66.667 23.46 0.00 0.00 3.14
4054 6175 1.178534 AATCCGGCGCCCCAAATATG 61.179 55.000 23.46 3.38 0.00 1.78
4055 6176 1.152830 AATCCGGCGCCCCAAATAT 59.847 52.632 23.46 2.24 0.00 1.28
4056 6177 1.826054 CAATCCGGCGCCCCAAATA 60.826 57.895 23.46 0.00 0.00 1.40
4057 6178 3.146913 CAATCCGGCGCCCCAAAT 61.147 61.111 23.46 6.25 0.00 2.32
4074 6195 2.800746 AAATTGTGAAGCGCGCGC 60.801 55.556 45.10 45.10 42.33 6.86
4075 6196 3.046460 GCAAATTGTGAAGCGCGCG 62.046 57.895 28.44 28.44 0.00 6.86
4076 6197 2.015627 TGCAAATTGTGAAGCGCGC 61.016 52.632 26.66 26.66 0.00 6.86
4077 6198 0.661187 AGTGCAAATTGTGAAGCGCG 60.661 50.000 0.00 0.00 41.96 6.86
4078 6199 0.780002 CAGTGCAAATTGTGAAGCGC 59.220 50.000 0.00 0.00 37.74 5.92
4079 6200 2.046313 GACAGTGCAAATTGTGAAGCG 58.954 47.619 4.67 0.00 0.00 4.68
4080 6201 3.047796 CAGACAGTGCAAATTGTGAAGC 58.952 45.455 4.67 0.00 0.00 3.86
4093 6214 0.318107 CGCCCAAAAAGCAGACAGTG 60.318 55.000 0.00 0.00 0.00 3.66
4094 6215 2.032981 CGCCCAAAAAGCAGACAGT 58.967 52.632 0.00 0.00 0.00 3.55
4095 6216 1.372128 GCGCCCAAAAAGCAGACAG 60.372 57.895 0.00 0.00 0.00 3.51
4096 6217 2.727544 GCGCCCAAAAAGCAGACA 59.272 55.556 0.00 0.00 0.00 3.41
4097 6218 2.429069 CGCGCCCAAAAAGCAGAC 60.429 61.111 0.00 0.00 0.00 3.51
4098 6219 4.341502 GCGCGCCCAAAAAGCAGA 62.342 61.111 23.24 0.00 0.00 4.26
4102 6223 1.757346 AAAAACGCGCGCCCAAAAAG 61.757 50.000 32.58 12.27 0.00 2.27
4103 6224 1.810030 AAAAACGCGCGCCCAAAAA 60.810 47.368 32.58 0.00 0.00 1.94
4104 6225 2.202756 AAAAACGCGCGCCCAAAA 60.203 50.000 32.58 0.00 0.00 2.44
4105 6226 2.956964 CAAAAACGCGCGCCCAAA 60.957 55.556 32.58 0.00 0.00 3.28
4106 6227 4.933064 CCAAAAACGCGCGCCCAA 62.933 61.111 32.58 0.00 0.00 4.12
4114 6235 1.847890 TAGCAGACGCCCAAAAACGC 61.848 55.000 0.00 0.00 39.83 4.84
4115 6236 0.589223 TTAGCAGACGCCCAAAAACG 59.411 50.000 0.00 0.00 39.83 3.60
4116 6237 2.661594 CTTTAGCAGACGCCCAAAAAC 58.338 47.619 0.00 0.00 39.83 2.43
4117 6238 1.000717 GCTTTAGCAGACGCCCAAAAA 60.001 47.619 0.00 0.00 41.59 1.94
4118 6239 0.596082 GCTTTAGCAGACGCCCAAAA 59.404 50.000 0.00 0.00 41.59 2.44
4119 6240 2.253513 GCTTTAGCAGACGCCCAAA 58.746 52.632 0.00 0.00 41.59 3.28
4120 6241 3.981308 GCTTTAGCAGACGCCCAA 58.019 55.556 0.00 0.00 41.59 4.12
4130 6251 1.068541 CGGGACCAACTTTGCTTTAGC 60.069 52.381 0.00 0.00 42.50 3.09
4131 6252 2.225727 GTCGGGACCAACTTTGCTTTAG 59.774 50.000 0.00 0.00 0.00 1.85
4132 6253 2.223745 GTCGGGACCAACTTTGCTTTA 58.776 47.619 0.00 0.00 0.00 1.85
4133 6254 1.029681 GTCGGGACCAACTTTGCTTT 58.970 50.000 0.00 0.00 0.00 3.51
4134 6255 1.164041 CGTCGGGACCAACTTTGCTT 61.164 55.000 0.00 0.00 0.00 3.91
4135 6256 1.597027 CGTCGGGACCAACTTTGCT 60.597 57.895 0.00 0.00 0.00 3.91
4136 6257 2.943653 CGTCGGGACCAACTTTGC 59.056 61.111 0.00 0.00 0.00 3.68
4137 6258 1.234615 ATGCGTCGGGACCAACTTTG 61.235 55.000 0.00 0.00 0.00 2.77
4138 6259 0.536460 AATGCGTCGGGACCAACTTT 60.536 50.000 0.00 0.00 0.00 2.66
4139 6260 0.322322 TAATGCGTCGGGACCAACTT 59.678 50.000 0.00 0.00 0.00 2.66
4140 6261 0.322322 TTAATGCGTCGGGACCAACT 59.678 50.000 0.00 0.00 0.00 3.16
4141 6262 1.158434 TTTAATGCGTCGGGACCAAC 58.842 50.000 0.00 0.00 0.00 3.77
4142 6263 1.807742 CTTTTAATGCGTCGGGACCAA 59.192 47.619 0.00 0.00 0.00 3.67
4143 6264 1.270947 ACTTTTAATGCGTCGGGACCA 60.271 47.619 0.00 0.00 0.00 4.02
4144 6265 1.129811 CACTTTTAATGCGTCGGGACC 59.870 52.381 0.00 0.00 0.00 4.46
4145 6266 1.465187 GCACTTTTAATGCGTCGGGAC 60.465 52.381 0.00 0.00 32.45 4.46
4146 6267 0.800012 GCACTTTTAATGCGTCGGGA 59.200 50.000 0.00 0.00 32.45 5.14
4147 6268 3.306206 GCACTTTTAATGCGTCGGG 57.694 52.632 0.00 0.00 32.45 5.14
4153 6274 3.501950 GCCACTGTAGCACTTTTAATGC 58.498 45.455 0.00 0.00 43.74 3.56
4154 6275 3.188460 ACGCCACTGTAGCACTTTTAATG 59.812 43.478 0.00 0.00 0.00 1.90
4155 6276 3.188460 CACGCCACTGTAGCACTTTTAAT 59.812 43.478 0.00 0.00 0.00 1.40
4156 6277 2.546368 CACGCCACTGTAGCACTTTTAA 59.454 45.455 0.00 0.00 0.00 1.52
4157 6278 2.139917 CACGCCACTGTAGCACTTTTA 58.860 47.619 0.00 0.00 0.00 1.52
4158 6279 0.944386 CACGCCACTGTAGCACTTTT 59.056 50.000 0.00 0.00 0.00 2.27
4159 6280 1.507141 GCACGCCACTGTAGCACTTT 61.507 55.000 0.00 0.00 0.00 2.66
4160 6281 1.961277 GCACGCCACTGTAGCACTT 60.961 57.895 0.00 0.00 0.00 3.16
4161 6282 2.357517 GCACGCCACTGTAGCACT 60.358 61.111 0.00 0.00 0.00 4.40
4162 6283 3.423154 GGCACGCCACTGTAGCAC 61.423 66.667 2.36 0.00 35.81 4.40
4163 6284 3.934962 TGGCACGCCACTGTAGCA 61.935 61.111 6.67 0.00 41.89 3.49
4172 6293 2.446282 CAATAAACGTTATGGCACGCC 58.554 47.619 0.00 0.00 44.37 5.68
4173 6294 2.446282 CCAATAAACGTTATGGCACGC 58.554 47.619 0.00 0.00 44.37 5.34
4174 6295 2.793237 GCCCAATAAACGTTATGGCACG 60.793 50.000 17.69 9.02 46.04 5.34
4175 6296 2.793237 CGCCCAATAAACGTTATGGCAC 60.793 50.000 17.69 12.45 37.25 5.01
4176 6297 1.402259 CGCCCAATAAACGTTATGGCA 59.598 47.619 17.69 0.00 37.25 4.92
4177 6298 1.862411 GCGCCCAATAAACGTTATGGC 60.862 52.381 17.69 15.49 0.00 4.40
4178 6299 1.595976 CGCGCCCAATAAACGTTATGG 60.596 52.381 16.66 16.66 0.00 2.74
4179 6300 1.595976 CCGCGCCCAATAAACGTTATG 60.596 52.381 0.00 1.20 0.00 1.90
4180 6301 0.658897 CCGCGCCCAATAAACGTTAT 59.341 50.000 0.00 0.00 0.00 1.89
4181 6302 0.390866 TCCGCGCCCAATAAACGTTA 60.391 50.000 0.00 0.00 0.00 3.18
4182 6303 1.235948 TTCCGCGCCCAATAAACGTT 61.236 50.000 0.00 0.00 0.00 3.99
4183 6304 1.027792 ATTCCGCGCCCAATAAACGT 61.028 50.000 0.00 0.00 0.00 3.99
4184 6305 0.099791 AATTCCGCGCCCAATAAACG 59.900 50.000 0.00 0.00 0.00 3.60
4185 6306 2.287393 AAATTCCGCGCCCAATAAAC 57.713 45.000 0.00 0.00 0.00 2.01
4186 6307 2.996621 CAAAAATTCCGCGCCCAATAAA 59.003 40.909 0.00 0.00 0.00 1.40
4187 6308 2.028930 ACAAAAATTCCGCGCCCAATAA 60.029 40.909 0.00 0.00 0.00 1.40
4188 6309 1.546476 ACAAAAATTCCGCGCCCAATA 59.454 42.857 0.00 0.00 0.00 1.90
4189 6310 0.320050 ACAAAAATTCCGCGCCCAAT 59.680 45.000 0.00 0.00 0.00 3.16
4190 6311 0.598680 CACAAAAATTCCGCGCCCAA 60.599 50.000 0.00 0.00 0.00 4.12
4191 6312 1.006805 CACAAAAATTCCGCGCCCA 60.007 52.632 0.00 0.00 0.00 5.36
4192 6313 2.379634 GCACAAAAATTCCGCGCCC 61.380 57.895 0.00 0.00 0.00 6.13
4193 6314 2.715849 CGCACAAAAATTCCGCGCC 61.716 57.895 0.00 0.00 39.43 6.53
4194 6315 2.715849 CCGCACAAAAATTCCGCGC 61.716 57.895 0.00 0.00 44.36 6.86
4195 6316 2.715849 GCCGCACAAAAATTCCGCG 61.716 57.895 0.00 0.00 45.25 6.46
4196 6317 2.379634 GGCCGCACAAAAATTCCGC 61.380 57.895 0.00 0.00 0.00 5.54
4197 6318 2.085844 CGGCCGCACAAAAATTCCG 61.086 57.895 14.67 0.00 0.00 4.30
4198 6319 0.598942 AACGGCCGCACAAAAATTCC 60.599 50.000 28.58 0.00 0.00 3.01
4199 6320 0.506506 CAACGGCCGCACAAAAATTC 59.493 50.000 28.58 0.00 0.00 2.17
4200 6321 0.878086 CCAACGGCCGCACAAAAATT 60.878 50.000 28.58 6.25 0.00 1.82
4201 6322 1.300542 CCAACGGCCGCACAAAAAT 60.301 52.632 28.58 0.00 0.00 1.82
4202 6323 2.105128 CCAACGGCCGCACAAAAA 59.895 55.556 28.58 0.00 0.00 1.94
4203 6324 2.829003 TCCAACGGCCGCACAAAA 60.829 55.556 28.58 2.77 0.00 2.44
4204 6325 3.283684 CTCCAACGGCCGCACAAA 61.284 61.111 28.58 6.34 0.00 2.83
4205 6326 3.545124 ATCTCCAACGGCCGCACAA 62.545 57.895 28.58 7.99 0.00 3.33
4206 6327 4.015406 ATCTCCAACGGCCGCACA 62.015 61.111 28.58 5.68 0.00 4.57
4207 6328 3.499737 CATCTCCAACGGCCGCAC 61.500 66.667 28.58 0.00 0.00 5.34
4210 6331 2.892425 GAGCATCTCCAACGGCCG 60.892 66.667 26.86 26.86 0.00 6.13
4221 6342 6.169800 GGAGGGAGTATTTCATAAGAGCATC 58.830 44.000 0.00 0.00 0.00 3.91
4222 6343 5.279708 CGGAGGGAGTATTTCATAAGAGCAT 60.280 44.000 0.00 0.00 0.00 3.79
4223 6344 4.039245 CGGAGGGAGTATTTCATAAGAGCA 59.961 45.833 0.00 0.00 0.00 4.26
4224 6345 4.039366 ACGGAGGGAGTATTTCATAAGAGC 59.961 45.833 0.00 0.00 0.00 4.09
4225 6346 5.793030 ACGGAGGGAGTATTTCATAAGAG 57.207 43.478 0.00 0.00 0.00 2.85
4226 6347 5.070047 GGAACGGAGGGAGTATTTCATAAGA 59.930 44.000 0.00 0.00 0.00 2.10
4374 6496 3.762823 ACAACTACTCCCTCCGTTTCTAG 59.237 47.826 0.00 0.00 0.00 2.43
4396 6519 6.257423 CACTTGATATGCGCTTCAATTACAA 58.743 36.000 9.73 3.90 31.83 2.41
4457 6580 2.233676 GGGTAAAAAGGGGCTGTCAATG 59.766 50.000 0.00 0.00 0.00 2.82
4469 6592 6.917217 TGAACAAATTGCAAGGGTAAAAAG 57.083 33.333 4.94 0.00 0.00 2.27
4473 6597 5.798125 TCATGAACAAATTGCAAGGGTAA 57.202 34.783 4.94 0.00 0.00 2.85
4474 6598 5.999205 ATCATGAACAAATTGCAAGGGTA 57.001 34.783 4.94 0.00 0.00 3.69
4501 6625 1.377994 CTCCCAAGGAGCTTGCTGT 59.622 57.895 0.00 0.00 43.29 4.40
4527 6659 8.749354 TGTGTTATGTATCAACTGTATCTCTGT 58.251 33.333 0.00 0.00 0.00 3.41
4543 6675 9.173021 AGTTAGCAAAATAGCATGTGTTATGTA 57.827 29.630 0.00 0.00 36.85 2.29
4547 6679 7.812191 CCAAAGTTAGCAAAATAGCATGTGTTA 59.188 33.333 0.00 0.00 36.85 2.41
4572 6707 5.841810 TCCATCTGTCAAATGAACAAAACC 58.158 37.500 0.00 0.00 0.00 3.27
4634 6769 0.178981 ATATGGCCTTGCTGCGGATT 60.179 50.000 3.32 0.00 0.00 3.01
4635 6770 0.892358 CATATGGCCTTGCTGCGGAT 60.892 55.000 3.32 0.00 0.00 4.18
4636 6771 1.526686 CATATGGCCTTGCTGCGGA 60.527 57.895 3.32 0.00 0.00 5.54
4637 6772 2.558286 CCATATGGCCTTGCTGCGG 61.558 63.158 9.29 0.00 0.00 5.69
4641 6776 0.178998 CAGCTCCATATGGCCTTGCT 60.179 55.000 17.58 18.34 34.44 3.91
4657 6792 1.528586 CATGATGCGCCTAGTTACAGC 59.471 52.381 4.18 0.00 0.00 4.40
4713 6849 1.153842 GCGGCAGCATAACCAAACC 60.154 57.895 3.18 0.00 44.35 3.27
4726 6864 0.613260 ATACAAGGTTCTCAGCGGCA 59.387 50.000 1.45 0.00 0.00 5.69
4755 6893 3.610040 AGTGTAAATGGTCAGCGATGA 57.390 42.857 0.00 0.00 0.00 2.92
4759 6897 4.214545 TGGTAAAAGTGTAAATGGTCAGCG 59.785 41.667 0.00 0.00 0.00 5.18
4804 6944 3.016031 TCGCTGGCATCATAAACAACAT 58.984 40.909 0.00 0.00 0.00 2.71
4819 6959 6.422776 AGTGTATATTTCTGTTTTCGCTGG 57.577 37.500 0.00 0.00 0.00 4.85
4857 7000 9.758651 GAACCTCAGTAAATAAAACACCAAATT 57.241 29.630 0.00 0.00 0.00 1.82
4878 7021 0.605589 GTTGCGGTGCCTTAGAACCT 60.606 55.000 3.29 0.00 34.06 3.50
4909 7056 3.119919 GGACAGCTCAAATGAAGCTTCAG 60.120 47.826 31.14 19.37 41.08 3.02
4913 7060 2.305343 AGAGGACAGCTCAAATGAAGCT 59.695 45.455 0.00 0.00 39.79 3.74
4949 7096 9.167311 GTATGTCACAAGAAATTACAGAGGATT 57.833 33.333 0.00 0.00 0.00 3.01
4951 7098 7.907389 AGTATGTCACAAGAAATTACAGAGGA 58.093 34.615 0.00 0.00 0.00 3.71
4952 7099 8.037758 AGAGTATGTCACAAGAAATTACAGAGG 58.962 37.037 0.00 0.00 0.00 3.69
4979 7128 7.989416 ACACTTTCTATATTTTGGAACGGAA 57.011 32.000 0.00 0.00 0.00 4.30
4995 7144 8.362639 ACTTGCATGAAAATTGATACACTTTCT 58.637 29.630 6.60 0.00 0.00 2.52
4996 7145 8.524870 ACTTGCATGAAAATTGATACACTTTC 57.475 30.769 6.60 0.00 0.00 2.62
5106 7680 9.784531 ACATCTCCAGTACCAAATTTATATCAG 57.215 33.333 0.00 0.00 0.00 2.90
5185 7759 6.480524 TTTTCACGACAAGTAATCCAGATG 57.519 37.500 0.00 0.00 0.00 2.90
5188 7762 7.827819 TCTATTTTCACGACAAGTAATCCAG 57.172 36.000 0.00 0.00 0.00 3.86
5195 7769 8.771920 TTGATACATCTATTTTCACGACAAGT 57.228 30.769 0.00 0.00 0.00 3.16
5285 7874 2.024273 TCCCTCTGTCCGGAATTACTCT 60.024 50.000 5.23 0.00 0.00 3.24
5299 7888 3.055385 TCCGTTCCAAAATACTCCCTCTG 60.055 47.826 0.00 0.00 0.00 3.35
5300 7889 3.178865 TCCGTTCCAAAATACTCCCTCT 58.821 45.455 0.00 0.00 0.00 3.69
5314 7903 3.406595 CTCATGCCCCCTCCGTTCC 62.407 68.421 0.00 0.00 0.00 3.62
5325 7914 1.153208 CAGAGGGTCAGCTCATGCC 60.153 63.158 0.00 0.00 40.80 4.40
5327 7916 3.834489 ATTACAGAGGGTCAGCTCATG 57.166 47.619 0.00 0.00 0.00 3.07
5332 7921 3.010420 GTTGGAATTACAGAGGGTCAGC 58.990 50.000 0.00 0.00 0.00 4.26
5337 7926 5.505780 TGTTATGGTTGGAATTACAGAGGG 58.494 41.667 0.00 0.00 0.00 4.30
5441 8030 0.317269 CGTTTGAGCTGCAGTGTTGG 60.317 55.000 16.64 0.00 0.00 3.77
5442 8031 0.657312 TCGTTTGAGCTGCAGTGTTG 59.343 50.000 16.64 0.00 0.00 3.33
5497 8089 8.879759 CGTTGTACTCCATAAGTCACATTTTAT 58.120 33.333 0.00 0.00 39.55 1.40
5586 8178 4.637534 GCTGATGCTGTTTTCTGAAGGATA 59.362 41.667 0.00 0.00 36.03 2.59
5649 8241 0.327000 AGGCCTGCCTACTCTTGGAT 60.327 55.000 9.42 0.00 46.14 3.41
5787 8379 2.138320 CATTGTGTCTTCGCTGTCACT 58.862 47.619 0.00 0.00 0.00 3.41
5796 8388 2.416431 GCCTGGATTGCATTGTGTCTTC 60.416 50.000 0.00 0.00 0.00 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.