Multiple sequence alignment - TraesCS3D01G527100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G527100 chr3D 100.000 3981 0 0 1 3981 605674864 605678844 0.000000e+00 7352
1 TraesCS3D01G527100 chr3D 89.898 1673 143 17 1509 3175 605973363 605975015 0.000000e+00 2130
2 TraesCS3D01G527100 chr3D 88.131 1407 126 24 1834 3233 605631833 605633205 0.000000e+00 1635
3 TraesCS3D01G527100 chr3D 89.333 225 19 4 3208 3429 605975008 605975230 1.090000e-70 278
4 TraesCS3D01G527100 chr3A 94.607 3041 145 8 1 3038 738710395 738707371 0.000000e+00 4689
5 TraesCS3D01G527100 chr3A 89.562 1916 186 10 1522 3429 738919650 738917741 0.000000e+00 2418
6 TraesCS3D01G527100 chr3A 88.570 1741 160 24 1694 3421 738678060 738676346 0.000000e+00 2076
7 TraesCS3D01G527100 chr3A 88.512 1741 161 19 1694 3421 738503389 738501675 0.000000e+00 2071
8 TraesCS3D01G527100 chr3A 90.120 1579 148 7 1856 3429 738245398 738243823 0.000000e+00 2045
9 TraesCS3D01G527100 chr3A 88.382 1687 180 13 1510 3188 738692085 738690407 0.000000e+00 2015
10 TraesCS3D01G527100 chr3A 86.461 1817 206 30 1412 3198 738223783 738221977 0.000000e+00 1956
11 TraesCS3D01G527100 chr3A 76.147 654 105 34 706 1347 738224527 738223913 3.010000e-76 296
12 TraesCS3D01G527100 chr3A 89.686 223 21 2 3208 3429 738757314 738757093 2.340000e-72 283
13 TraesCS3D01G527100 chr3A 90.654 214 16 4 3217 3428 738690429 738690218 8.420000e-72 281
14 TraesCS3D01G527100 chr3A 89.655 203 15 3 3509 3710 738675796 738675599 1.840000e-63 254
15 TraesCS3D01G527100 chr3B 94.017 2808 145 12 1 2801 816156050 816153259 0.000000e+00 4233
16 TraesCS3D01G527100 chr3B 82.123 2120 315 54 820 2901 816173013 816170920 0.000000e+00 1757
17 TraesCS3D01G527100 chr3B 86.700 406 47 7 2995 3396 816097988 816097586 1.020000e-120 444
18 TraesCS3D01G527100 chr3B 88.776 196 22 0 2808 3003 816151468 816151273 1.430000e-59 241
19 TraesCS3D01G527100 chr5D 87.500 232 28 1 2 232 534544976 534544745 2.360000e-67 267
20 TraesCS3D01G527100 chrUn 89.024 82 7 1 3902 3981 42333437 42333356 2.530000e-17 100


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G527100 chr3D 605674864 605678844 3980 False 7352 7352 100.0000 1 3981 1 chr3D.!!$F2 3980
1 TraesCS3D01G527100 chr3D 605631833 605633205 1372 False 1635 1635 88.1310 1834 3233 1 chr3D.!!$F1 1399
2 TraesCS3D01G527100 chr3D 605973363 605975230 1867 False 1204 2130 89.6155 1509 3429 2 chr3D.!!$F3 1920
3 TraesCS3D01G527100 chr3A 738707371 738710395 3024 True 4689 4689 94.6070 1 3038 1 chr3A.!!$R3 3037
4 TraesCS3D01G527100 chr3A 738917741 738919650 1909 True 2418 2418 89.5620 1522 3429 1 chr3A.!!$R5 1907
5 TraesCS3D01G527100 chr3A 738501675 738503389 1714 True 2071 2071 88.5120 1694 3421 1 chr3A.!!$R2 1727
6 TraesCS3D01G527100 chr3A 738243823 738245398 1575 True 2045 2045 90.1200 1856 3429 1 chr3A.!!$R1 1573
7 TraesCS3D01G527100 chr3A 738675599 738678060 2461 True 1165 2076 89.1125 1694 3710 2 chr3A.!!$R7 2016
8 TraesCS3D01G527100 chr3A 738690218 738692085 1867 True 1148 2015 89.5180 1510 3428 2 chr3A.!!$R8 1918
9 TraesCS3D01G527100 chr3A 738221977 738224527 2550 True 1126 1956 81.3040 706 3198 2 chr3A.!!$R6 2492
10 TraesCS3D01G527100 chr3B 816151273 816156050 4777 True 2237 4233 91.3965 1 3003 2 chr3B.!!$R3 3002
11 TraesCS3D01G527100 chr3B 816170920 816173013 2093 True 1757 1757 82.1230 820 2901 1 chr3B.!!$R2 2081

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
377 379 0.163146 GCGTCGGTTGCTGTAGTTTC 59.837 55.000 0.00 0.00 0.00 2.78 F
889 898 0.464554 GCAGAGCTGATTGTACCCCC 60.465 60.000 0.85 0.00 0.00 5.40 F
1185 1194 1.285962 AGTTGCATAGAGGCCCAACAT 59.714 47.619 18.62 5.26 39.86 2.71 F
2534 2674 1.446272 CTGAACGGGAAGAGCGACC 60.446 63.158 0.00 0.00 0.00 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2174 2301 0.182775 AGCAGTGGAACCTCGGTTTT 59.817 50.000 2.39 0.00 38.60 2.43 R
2880 4805 1.474330 TTGCCGAGCAGATCTACTCA 58.526 50.000 20.54 1.74 40.61 3.41 R
2962 4887 3.851955 TAGCGTGGTAGGCTAGCC 58.148 61.111 27.19 27.19 40.20 3.93 R
3895 6333 0.039708 GCAAAGACTTGTCAGCAGGC 60.040 55.000 3.49 0.00 34.79 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 46 1.371558 GCAACGAGACTCCCAACCT 59.628 57.895 0.00 0.00 0.00 3.50
46 48 0.679505 CAACGAGACTCCCAACCTCA 59.320 55.000 0.00 0.00 0.00 3.86
102 104 1.920574 CCGGCGATATCGATGTGAATC 59.079 52.381 28.63 7.86 43.02 2.52
107 109 5.389830 CGGCGATATCGATGTGAATCATTTT 60.390 40.000 28.63 0.00 43.02 1.82
168 170 2.778299 TCCCTTTGAAATCTGGTGTCG 58.222 47.619 0.00 0.00 0.00 4.35
179 181 4.801330 ATCTGGTGTCGAAGTGTATGAA 57.199 40.909 0.00 0.00 0.00 2.57
377 379 0.163146 GCGTCGGTTGCTGTAGTTTC 59.837 55.000 0.00 0.00 0.00 2.78
453 455 3.697166 AGGAAAATTAACACCGGAGCAT 58.303 40.909 9.46 0.00 0.00 3.79
682 684 2.737359 GCATGACATCAAGCAATGGGTG 60.737 50.000 0.00 0.00 40.01 4.61
806 811 8.573035 ACCAAATGTACAACTGTTAGGTATTTG 58.427 33.333 0.00 16.83 0.00 2.32
807 812 8.788806 CCAAATGTACAACTGTTAGGTATTTGA 58.211 33.333 21.19 2.08 0.00 2.69
811 816 7.913789 TGTACAACTGTTAGGTATTTGAGGAT 58.086 34.615 0.00 0.00 0.00 3.24
888 897 0.543749 AGCAGAGCTGATTGTACCCC 59.456 55.000 0.85 0.00 37.57 4.95
889 898 0.464554 GCAGAGCTGATTGTACCCCC 60.465 60.000 0.85 0.00 0.00 5.40
948 957 3.416156 CTTAGAAGAGGGTTGCTTTGCT 58.584 45.455 0.00 0.00 0.00 3.91
1185 1194 1.285962 AGTTGCATAGAGGCCCAACAT 59.714 47.619 18.62 5.26 39.86 2.71
1250 1259 4.743151 CGTAGAAGTAAACACTGCAGACAA 59.257 41.667 23.35 0.00 0.00 3.18
1564 1681 3.965379 TGAATGCATTCAGCCAAACAT 57.035 38.095 33.08 0.00 41.51 2.71
1581 1698 5.279406 CCAAACATTTGTAAAGGGATCTGCA 60.279 40.000 3.79 0.00 36.45 4.41
1922 2048 7.706281 ACGTTGATATCATCTGATGAAACTC 57.294 36.000 22.91 18.26 43.50 3.01
2067 2193 3.240401 CAGCGTGTTGTTGCAGTAAAAAG 59.760 43.478 0.00 0.00 0.00 2.27
2099 2226 1.742268 TCGAGCAGTCTGAGATCAGTG 59.258 52.381 3.32 3.33 44.12 3.66
2152 2279 9.167311 ACTCAGATAAACCACAGAAATATTGTC 57.833 33.333 0.00 0.00 0.00 3.18
2174 2301 3.777106 AGCTCTTTGGATGTTGTCTCA 57.223 42.857 0.00 0.00 0.00 3.27
2534 2674 1.446272 CTGAACGGGAAGAGCGACC 60.446 63.158 0.00 0.00 0.00 4.79
2668 2808 7.448420 TCAATGAGGGAAGAATCACAGATATC 58.552 38.462 0.00 0.00 0.00 1.63
2880 4805 3.672767 ACCAAGGTCGTTAACTCGAAT 57.327 42.857 3.71 0.00 41.47 3.34
2928 4853 1.538876 AGCCAGGAGGTAGCCAACA 60.539 57.895 0.00 0.00 37.19 3.33
2962 4887 2.266554 GAGGCAGAGTTCTTGTCATCG 58.733 52.381 0.00 0.00 0.00 3.84
3052 4978 5.221641 TGTGAACTGTTGCTAGAACCTGTAT 60.222 40.000 0.00 0.00 0.00 2.29
3083 5009 9.998752 AGGCTAGTCAGATTGGTACTATAATAT 57.001 33.333 0.00 0.00 0.00 1.28
3143 5107 5.221028 CGGTTGGAATTATGCTTGCTGATAA 60.221 40.000 0.00 0.00 0.00 1.75
3153 5119 8.777865 TTATGCTTGCTGATAATATGTAGACC 57.222 34.615 0.00 0.00 0.00 3.85
3154 5120 6.425210 TGCTTGCTGATAATATGTAGACCT 57.575 37.500 0.00 0.00 0.00 3.85
3156 5122 5.641209 GCTTGCTGATAATATGTAGACCTGG 59.359 44.000 0.00 0.00 0.00 4.45
3187 5153 9.155975 GTTATCTTGAGATGTGTAGTGAATTGT 57.844 33.333 3.79 0.00 36.05 2.71
3275 5245 1.456296 GCACTCATGCCATCTTGTCA 58.544 50.000 0.00 0.00 46.97 3.58
3300 5270 3.071479 CCACCGTTAGTACATTGCTGTT 58.929 45.455 0.00 0.00 36.79 3.16
3352 5324 9.753674 AATATATGGTTCAAGTTTTTCCTCTCA 57.246 29.630 0.00 0.00 0.00 3.27
3353 5325 5.774498 ATGGTTCAAGTTTTTCCTCTCAC 57.226 39.130 0.00 0.00 0.00 3.51
3401 5374 3.386768 TGTTCGGGAACAGAAAGAGAG 57.613 47.619 10.04 0.00 45.42 3.20
3421 5396 4.709397 AGAGTGCACTATATATCCAGCTCC 59.291 45.833 21.73 1.47 0.00 4.70
3429 5404 7.148171 GCACTATATATCCAGCTCCAAAATTCC 60.148 40.741 0.00 0.00 0.00 3.01
3430 5405 7.884877 CACTATATATCCAGCTCCAAAATTCCA 59.115 37.037 0.00 0.00 0.00 3.53
3431 5406 7.885399 ACTATATATCCAGCTCCAAAATTCCAC 59.115 37.037 0.00 0.00 0.00 4.02
3432 5407 2.673775 TCCAGCTCCAAAATTCCACA 57.326 45.000 0.00 0.00 0.00 4.17
3433 5408 2.956132 TCCAGCTCCAAAATTCCACAA 58.044 42.857 0.00 0.00 0.00 3.33
3434 5409 3.303938 TCCAGCTCCAAAATTCCACAAA 58.696 40.909 0.00 0.00 0.00 2.83
3435 5410 3.903090 TCCAGCTCCAAAATTCCACAAAT 59.097 39.130 0.00 0.00 0.00 2.32
3436 5411 4.347583 TCCAGCTCCAAAATTCCACAAATT 59.652 37.500 0.00 0.00 39.30 1.82
3437 5412 5.541868 TCCAGCTCCAAAATTCCACAAATTA 59.458 36.000 0.00 0.00 36.54 1.40
3438 5413 6.042552 TCCAGCTCCAAAATTCCACAAATTAA 59.957 34.615 0.00 0.00 36.54 1.40
3439 5414 6.147656 CCAGCTCCAAAATTCCACAAATTAAC 59.852 38.462 0.00 0.00 36.54 2.01
3441 5416 6.930722 AGCTCCAAAATTCCACAAATTAACTG 59.069 34.615 0.00 0.00 36.54 3.16
3443 5418 7.116805 GCTCCAAAATTCCACAAATTAACTGAG 59.883 37.037 0.00 0.00 36.54 3.35
3444 5419 7.441017 TCCAAAATTCCACAAATTAACTGAGG 58.559 34.615 0.00 0.00 36.54 3.86
3445 5420 7.070571 TCCAAAATTCCACAAATTAACTGAGGT 59.929 33.333 3.71 0.00 36.54 3.85
3446 5421 7.714813 CCAAAATTCCACAAATTAACTGAGGTT 59.285 33.333 3.71 0.00 36.54 3.50
3449 5424 9.981114 AAATTCCACAAATTAACTGAGGTTAAG 57.019 29.630 7.29 0.00 46.70 1.85
3451 5426 6.007703 TCCACAAATTAACTGAGGTTAAGGG 58.992 40.000 7.29 4.63 46.70 3.95
3452 5427 5.336451 CCACAAATTAACTGAGGTTAAGGGC 60.336 44.000 7.29 0.00 46.70 5.19
3453 5428 4.770531 ACAAATTAACTGAGGTTAAGGGCC 59.229 41.667 0.00 0.00 46.70 5.80
3494 5469 3.810896 GGGTGCGGGCGTGATTTC 61.811 66.667 0.00 0.00 0.00 2.17
3495 5470 2.746277 GGTGCGGGCGTGATTTCT 60.746 61.111 0.00 0.00 0.00 2.52
3496 5471 2.480555 GTGCGGGCGTGATTTCTG 59.519 61.111 0.00 0.00 0.00 3.02
3497 5472 2.031919 TGCGGGCGTGATTTCTGT 59.968 55.556 0.00 0.00 0.00 3.41
3498 5473 2.032634 TGCGGGCGTGATTTCTGTC 61.033 57.895 0.00 0.00 0.00 3.51
3499 5474 1.741770 GCGGGCGTGATTTCTGTCT 60.742 57.895 0.00 0.00 0.00 3.41
3500 5475 1.970917 GCGGGCGTGATTTCTGTCTG 61.971 60.000 0.00 0.00 0.00 3.51
3501 5476 0.670546 CGGGCGTGATTTCTGTCTGT 60.671 55.000 0.00 0.00 0.00 3.41
3503 5478 1.512926 GGCGTGATTTCTGTCTGTGT 58.487 50.000 0.00 0.00 0.00 3.72
3504 5479 1.873591 GGCGTGATTTCTGTCTGTGTT 59.126 47.619 0.00 0.00 0.00 3.32
3506 5481 3.496884 GGCGTGATTTCTGTCTGTGTTTA 59.503 43.478 0.00 0.00 0.00 2.01
3507 5482 4.024387 GGCGTGATTTCTGTCTGTGTTTAA 60.024 41.667 0.00 0.00 0.00 1.52
3539 5976 1.222115 GCCTTTAGCCCGAGCGTATG 61.222 60.000 0.00 0.00 46.67 2.39
3542 5979 1.338973 CTTTAGCCCGAGCGTATGGTA 59.661 52.381 0.00 0.00 46.67 3.25
3573 6010 5.426504 TGTCTGTGTTTGGCATGAATTTTT 58.573 33.333 0.00 0.00 0.00 1.94
3596 6033 4.368067 ACTAGGTGCTGGTAATCCCTTTA 58.632 43.478 0.00 0.00 0.00 1.85
3615 6052 6.349363 CCCTTTATTGTACAGAGCAAACCTTC 60.349 42.308 0.00 0.00 0.00 3.46
3619 6057 3.799366 TGTACAGAGCAAACCTTCGAAA 58.201 40.909 0.00 0.00 0.00 3.46
3629 6067 4.499019 GCAAACCTTCGAAATCCAGAAACA 60.499 41.667 0.00 0.00 0.00 2.83
3632 6070 3.253432 ACCTTCGAAATCCAGAAACAAGC 59.747 43.478 0.00 0.00 0.00 4.01
3641 6079 6.610075 AATCCAGAAACAAGCCATGTAATT 57.390 33.333 0.00 0.00 42.99 1.40
3642 6080 7.716799 AATCCAGAAACAAGCCATGTAATTA 57.283 32.000 0.00 0.00 42.99 1.40
3643 6081 7.716799 ATCCAGAAACAAGCCATGTAATTAA 57.283 32.000 0.00 0.00 42.99 1.40
3644 6082 7.716799 TCCAGAAACAAGCCATGTAATTAAT 57.283 32.000 0.00 0.00 42.99 1.40
3645 6083 7.546358 TCCAGAAACAAGCCATGTAATTAATG 58.454 34.615 0.00 0.00 42.99 1.90
3676 6114 0.755686 GGACAGAGATAGGCTGGTGG 59.244 60.000 0.00 0.00 37.69 4.61
3707 6145 9.578576 TTTTACGGGCTAGAATTAGAGATAGTA 57.421 33.333 0.00 0.00 0.00 1.82
3710 6148 6.539464 ACGGGCTAGAATTAGAGATAGTATCG 59.461 42.308 4.48 0.00 0.00 2.92
3711 6149 6.762187 CGGGCTAGAATTAGAGATAGTATCGA 59.238 42.308 4.48 0.00 0.00 3.59
3712 6150 7.254522 CGGGCTAGAATTAGAGATAGTATCGAC 60.255 44.444 4.48 3.83 0.00 4.20
3713 6151 7.771826 GGGCTAGAATTAGAGATAGTATCGACT 59.228 40.741 14.11 14.11 39.92 4.18
3714 6152 8.609176 GGCTAGAATTAGAGATAGTATCGACTG 58.391 40.741 17.17 5.73 36.28 3.51
3715 6153 9.373603 GCTAGAATTAGAGATAGTATCGACTGA 57.626 37.037 17.17 12.24 36.28 3.41
3718 6156 9.787435 AGAATTAGAGATAGTATCGACTGACTT 57.213 33.333 17.17 10.59 36.28 3.01
3719 6157 9.820229 GAATTAGAGATAGTATCGACTGACTTG 57.180 37.037 17.17 0.00 36.28 3.16
3720 6158 5.682943 AGAGATAGTATCGACTGACTTGC 57.317 43.478 4.48 0.00 36.28 4.01
3721 6159 4.212425 AGAGATAGTATCGACTGACTTGCG 59.788 45.833 4.48 0.00 36.28 4.85
3722 6160 4.127907 AGATAGTATCGACTGACTTGCGA 58.872 43.478 4.48 0.00 36.28 5.10
3723 6161 2.834574 AGTATCGACTGACTTGCGAG 57.165 50.000 0.00 0.00 37.48 5.03
3724 6162 1.402259 AGTATCGACTGACTTGCGAGG 59.598 52.381 5.79 0.00 37.48 4.63
3725 6163 0.100682 TATCGACTGACTTGCGAGGC 59.899 55.000 5.79 1.89 37.48 4.70
3726 6164 2.564553 ATCGACTGACTTGCGAGGCC 62.565 60.000 3.72 0.00 37.48 5.19
3727 6165 2.659610 GACTGACTTGCGAGGCCT 59.340 61.111 3.86 3.86 0.00 5.19
3728 6166 1.446966 GACTGACTTGCGAGGCCTC 60.447 63.158 23.79 23.79 0.00 4.70
3729 6167 2.125350 CTGACTTGCGAGGCCTCC 60.125 66.667 27.20 19.25 0.00 4.30
3730 6168 3.997064 CTGACTTGCGAGGCCTCCG 62.997 68.421 27.20 21.49 0.00 4.63
3731 6169 4.070552 GACTTGCGAGGCCTCCGT 62.071 66.667 27.20 17.83 0.00 4.69
3732 6170 4.379243 ACTTGCGAGGCCTCCGTG 62.379 66.667 27.20 14.31 0.00 4.94
3733 6171 4.069232 CTTGCGAGGCCTCCGTGA 62.069 66.667 27.20 9.66 0.00 4.35
3734 6172 3.997064 CTTGCGAGGCCTCCGTGAG 62.997 68.421 27.20 15.21 0.00 3.51
3736 6174 4.500116 GCGAGGCCTCCGTGAGTC 62.500 72.222 27.20 0.10 0.00 3.36
3737 6175 3.062466 CGAGGCCTCCGTGAGTCA 61.062 66.667 27.20 0.00 0.00 3.41
3738 6176 2.574399 GAGGCCTCCGTGAGTCAC 59.426 66.667 23.19 13.56 0.00 3.67
3749 6187 2.732001 GTGAGTCACGACAACAAACC 57.268 50.000 7.68 0.00 0.00 3.27
3750 6188 2.004017 GTGAGTCACGACAACAAACCA 58.996 47.619 7.68 0.00 0.00 3.67
3751 6189 2.612212 GTGAGTCACGACAACAAACCAT 59.388 45.455 7.68 0.00 0.00 3.55
3752 6190 3.064820 GTGAGTCACGACAACAAACCATT 59.935 43.478 7.68 0.00 0.00 3.16
3753 6191 3.311322 TGAGTCACGACAACAAACCATTC 59.689 43.478 0.00 0.00 0.00 2.67
3754 6192 3.275143 AGTCACGACAACAAACCATTCA 58.725 40.909 0.00 0.00 0.00 2.57
3755 6193 3.692101 AGTCACGACAACAAACCATTCAA 59.308 39.130 0.00 0.00 0.00 2.69
3756 6194 4.035017 GTCACGACAACAAACCATTCAAG 58.965 43.478 0.00 0.00 0.00 3.02
3757 6195 3.942115 TCACGACAACAAACCATTCAAGA 59.058 39.130 0.00 0.00 0.00 3.02
3758 6196 4.396478 TCACGACAACAAACCATTCAAGAA 59.604 37.500 0.00 0.00 0.00 2.52
3759 6197 4.734854 CACGACAACAAACCATTCAAGAAG 59.265 41.667 0.00 0.00 0.00 2.85
3760 6198 3.730715 CGACAACAAACCATTCAAGAAGC 59.269 43.478 0.00 0.00 0.00 3.86
3761 6199 4.681744 GACAACAAACCATTCAAGAAGCA 58.318 39.130 0.00 0.00 0.00 3.91
3762 6200 4.685924 ACAACAAACCATTCAAGAAGCAG 58.314 39.130 0.00 0.00 0.00 4.24
3763 6201 3.375782 ACAAACCATTCAAGAAGCAGC 57.624 42.857 0.00 0.00 0.00 5.25
3764 6202 2.694628 ACAAACCATTCAAGAAGCAGCA 59.305 40.909 0.00 0.00 0.00 4.41
3765 6203 3.132646 ACAAACCATTCAAGAAGCAGCAA 59.867 39.130 0.00 0.00 0.00 3.91
3766 6204 4.121317 CAAACCATTCAAGAAGCAGCAAA 58.879 39.130 0.00 0.00 0.00 3.68
3767 6205 4.405116 AACCATTCAAGAAGCAGCAAAA 57.595 36.364 0.00 0.00 0.00 2.44
3768 6206 4.405116 ACCATTCAAGAAGCAGCAAAAA 57.595 36.364 0.00 0.00 0.00 1.94
3769 6207 4.964593 ACCATTCAAGAAGCAGCAAAAAT 58.035 34.783 0.00 0.00 0.00 1.82
3770 6208 5.370679 ACCATTCAAGAAGCAGCAAAAATT 58.629 33.333 0.00 0.00 0.00 1.82
3771 6209 5.467735 ACCATTCAAGAAGCAGCAAAAATTC 59.532 36.000 0.00 0.00 0.00 2.17
3772 6210 5.106830 CCATTCAAGAAGCAGCAAAAATTCC 60.107 40.000 0.00 0.00 0.00 3.01
3773 6211 4.942761 TCAAGAAGCAGCAAAAATTCCT 57.057 36.364 0.00 0.00 0.00 3.36
3774 6212 6.403866 TTCAAGAAGCAGCAAAAATTCCTA 57.596 33.333 0.00 0.00 0.00 2.94
3775 6213 5.772521 TCAAGAAGCAGCAAAAATTCCTAC 58.227 37.500 0.00 0.00 0.00 3.18
3776 6214 5.301551 TCAAGAAGCAGCAAAAATTCCTACA 59.698 36.000 0.00 0.00 0.00 2.74
3777 6215 5.789643 AGAAGCAGCAAAAATTCCTACAA 57.210 34.783 0.00 0.00 0.00 2.41
3778 6216 6.160576 AGAAGCAGCAAAAATTCCTACAAA 57.839 33.333 0.00 0.00 0.00 2.83
3779 6217 6.762333 AGAAGCAGCAAAAATTCCTACAAAT 58.238 32.000 0.00 0.00 0.00 2.32
3780 6218 6.870439 AGAAGCAGCAAAAATTCCTACAAATC 59.130 34.615 0.00 0.00 0.00 2.17
3781 6219 6.100404 AGCAGCAAAAATTCCTACAAATCA 57.900 33.333 0.00 0.00 0.00 2.57
3782 6220 6.523840 AGCAGCAAAAATTCCTACAAATCAA 58.476 32.000 0.00 0.00 0.00 2.57
3783 6221 6.991531 AGCAGCAAAAATTCCTACAAATCAAA 59.008 30.769 0.00 0.00 0.00 2.69
3784 6222 7.172019 AGCAGCAAAAATTCCTACAAATCAAAG 59.828 33.333 0.00 0.00 0.00 2.77
3785 6223 7.171337 GCAGCAAAAATTCCTACAAATCAAAGA 59.829 33.333 0.00 0.00 0.00 2.52
3786 6224 8.706035 CAGCAAAAATTCCTACAAATCAAAGAG 58.294 33.333 0.00 0.00 0.00 2.85
3787 6225 8.641541 AGCAAAAATTCCTACAAATCAAAGAGA 58.358 29.630 0.00 0.00 0.00 3.10
3788 6226 9.428097 GCAAAAATTCCTACAAATCAAAGAGAT 57.572 29.630 0.00 0.00 39.09 2.75
3796 6234 9.177608 TCCTACAAATCAAAGAGATAAACATGG 57.822 33.333 0.00 0.00 35.39 3.66
3797 6235 8.960591 CCTACAAATCAAAGAGATAAACATGGT 58.039 33.333 0.00 0.00 35.39 3.55
3798 6236 9.994432 CTACAAATCAAAGAGATAAACATGGTC 57.006 33.333 0.00 0.00 35.39 4.02
3799 6237 7.830739 ACAAATCAAAGAGATAAACATGGTCC 58.169 34.615 0.00 0.00 35.39 4.46
3800 6238 6.683974 AATCAAAGAGATAAACATGGTCCG 57.316 37.500 0.00 0.00 35.39 4.79
3801 6239 5.414789 TCAAAGAGATAAACATGGTCCGA 57.585 39.130 0.00 0.00 0.00 4.55
3802 6240 5.419542 TCAAAGAGATAAACATGGTCCGAG 58.580 41.667 0.00 0.00 0.00 4.63
3803 6241 5.186992 TCAAAGAGATAAACATGGTCCGAGA 59.813 40.000 0.00 0.00 0.00 4.04
3804 6242 5.677319 AAGAGATAAACATGGTCCGAGAA 57.323 39.130 0.00 0.00 0.00 2.87
3805 6243 5.677319 AGAGATAAACATGGTCCGAGAAA 57.323 39.130 0.00 0.00 0.00 2.52
3806 6244 6.240549 AGAGATAAACATGGTCCGAGAAAT 57.759 37.500 0.00 0.00 0.00 2.17
3807 6245 6.051717 AGAGATAAACATGGTCCGAGAAATG 58.948 40.000 0.00 0.00 0.00 2.32
3808 6246 5.745227 AGATAAACATGGTCCGAGAAATGT 58.255 37.500 0.00 0.00 34.79 2.71
3809 6247 5.586243 AGATAAACATGGTCCGAGAAATGTG 59.414 40.000 0.00 0.00 33.65 3.21
3810 6248 3.417069 AACATGGTCCGAGAAATGTGA 57.583 42.857 0.00 0.00 33.65 3.58
3811 6249 3.417069 ACATGGTCCGAGAAATGTGAA 57.583 42.857 0.00 0.00 32.18 3.18
3812 6250 3.074412 ACATGGTCCGAGAAATGTGAAC 58.926 45.455 0.00 0.00 32.18 3.18
3813 6251 2.920724 TGGTCCGAGAAATGTGAACA 57.079 45.000 0.00 0.00 0.00 3.18
3814 6252 3.417069 TGGTCCGAGAAATGTGAACAT 57.583 42.857 0.00 0.00 38.41 2.71
3815 6253 3.073678 TGGTCCGAGAAATGTGAACATG 58.926 45.455 0.00 0.00 36.56 3.21
3816 6254 2.420022 GGTCCGAGAAATGTGAACATGG 59.580 50.000 0.00 0.00 36.56 3.66
3817 6255 2.083774 TCCGAGAAATGTGAACATGGC 58.916 47.619 0.00 0.00 36.56 4.40
3818 6256 1.811965 CCGAGAAATGTGAACATGGCA 59.188 47.619 0.00 0.00 36.56 4.92
3819 6257 2.159476 CCGAGAAATGTGAACATGGCAG 60.159 50.000 0.00 0.00 36.56 4.85
3820 6258 2.743664 CGAGAAATGTGAACATGGCAGA 59.256 45.455 0.00 0.00 36.56 4.26
3821 6259 3.376234 CGAGAAATGTGAACATGGCAGAT 59.624 43.478 0.00 0.00 36.56 2.90
3822 6260 4.495349 CGAGAAATGTGAACATGGCAGATC 60.495 45.833 0.00 0.00 36.56 2.75
3823 6261 4.597004 AGAAATGTGAACATGGCAGATCT 58.403 39.130 0.00 0.00 36.56 2.75
3824 6262 4.639310 AGAAATGTGAACATGGCAGATCTC 59.361 41.667 0.00 0.00 36.56 2.75
3825 6263 3.639672 ATGTGAACATGGCAGATCTCA 57.360 42.857 0.00 0.00 34.83 3.27
3826 6264 2.981898 TGTGAACATGGCAGATCTCAG 58.018 47.619 0.00 0.00 0.00 3.35
3827 6265 2.286872 GTGAACATGGCAGATCTCAGG 58.713 52.381 0.00 0.00 0.00 3.86
3828 6266 1.307097 GAACATGGCAGATCTCAGGC 58.693 55.000 0.00 0.00 0.00 4.85
3829 6267 0.622136 AACATGGCAGATCTCAGGCA 59.378 50.000 11.10 11.10 41.69 4.75
3830 6268 0.180642 ACATGGCAGATCTCAGGCAG 59.819 55.000 13.64 8.99 40.87 4.85
3831 6269 1.148723 ATGGCAGATCTCAGGCAGC 59.851 57.895 13.64 4.01 40.87 5.25
3832 6270 1.632965 ATGGCAGATCTCAGGCAGCA 61.633 55.000 13.64 1.34 40.87 4.41
3833 6271 1.818785 GGCAGATCTCAGGCAGCAC 60.819 63.158 5.94 0.00 0.00 4.40
3834 6272 2.172372 GCAGATCTCAGGCAGCACG 61.172 63.158 0.00 0.00 0.00 5.34
3835 6273 2.172372 CAGATCTCAGGCAGCACGC 61.172 63.158 0.00 0.00 41.28 5.34
3836 6274 2.125391 GATCTCAGGCAGCACGCA 60.125 61.111 0.00 0.00 45.17 5.24
3837 6275 2.125229 ATCTCAGGCAGCACGCAG 60.125 61.111 0.00 0.00 45.17 5.18
3838 6276 2.569072 GATCTCAGGCAGCACGCAGA 62.569 60.000 0.00 0.00 45.17 4.26
3839 6277 2.575125 ATCTCAGGCAGCACGCAGAG 62.575 60.000 11.26 11.26 45.17 3.35
3840 6278 4.383861 TCAGGCAGCACGCAGAGG 62.384 66.667 0.00 0.00 45.17 3.69
3841 6279 4.383861 CAGGCAGCACGCAGAGGA 62.384 66.667 0.00 0.00 45.17 3.71
3842 6280 3.397439 AGGCAGCACGCAGAGGAT 61.397 61.111 0.00 0.00 45.17 3.24
3843 6281 2.060383 AGGCAGCACGCAGAGGATA 61.060 57.895 0.00 0.00 45.17 2.59
3844 6282 1.070445 GGCAGCACGCAGAGGATAT 59.930 57.895 0.00 0.00 45.17 1.63
3845 6283 0.533755 GGCAGCACGCAGAGGATATT 60.534 55.000 0.00 0.00 45.17 1.28
3846 6284 0.864455 GCAGCACGCAGAGGATATTC 59.136 55.000 0.00 0.00 41.79 1.75
3847 6285 1.807755 GCAGCACGCAGAGGATATTCA 60.808 52.381 0.00 0.00 41.79 2.57
3848 6286 2.763933 CAGCACGCAGAGGATATTCAT 58.236 47.619 0.00 0.00 0.00 2.57
3849 6287 2.479275 CAGCACGCAGAGGATATTCATG 59.521 50.000 0.00 0.00 0.00 3.07
3850 6288 1.802960 GCACGCAGAGGATATTCATGG 59.197 52.381 0.00 0.00 0.00 3.66
3851 6289 2.808202 GCACGCAGAGGATATTCATGGT 60.808 50.000 0.00 0.00 0.00 3.55
3852 6290 3.470709 CACGCAGAGGATATTCATGGTT 58.529 45.455 0.00 0.00 0.00 3.67
3853 6291 4.631131 CACGCAGAGGATATTCATGGTTA 58.369 43.478 0.00 0.00 0.00 2.85
3854 6292 4.449068 CACGCAGAGGATATTCATGGTTAC 59.551 45.833 0.00 0.00 0.00 2.50
3855 6293 4.345257 ACGCAGAGGATATTCATGGTTACT 59.655 41.667 0.00 0.00 0.00 2.24
3856 6294 5.163301 ACGCAGAGGATATTCATGGTTACTT 60.163 40.000 0.00 0.00 0.00 2.24
3857 6295 5.760253 CGCAGAGGATATTCATGGTTACTTT 59.240 40.000 0.00 0.00 0.00 2.66
3858 6296 6.260936 CGCAGAGGATATTCATGGTTACTTTT 59.739 38.462 0.00 0.00 0.00 2.27
3859 6297 7.519008 CGCAGAGGATATTCATGGTTACTTTTC 60.519 40.741 0.00 0.00 0.00 2.29
3860 6298 7.283127 GCAGAGGATATTCATGGTTACTTTTCA 59.717 37.037 0.00 0.00 0.00 2.69
3861 6299 9.347240 CAGAGGATATTCATGGTTACTTTTCAT 57.653 33.333 0.00 0.00 0.00 2.57
3862 6300 9.347240 AGAGGATATTCATGGTTACTTTTCATG 57.653 33.333 0.00 0.00 39.49 3.07
3863 6301 9.125026 GAGGATATTCATGGTTACTTTTCATGT 57.875 33.333 0.00 0.00 39.25 3.21
3864 6302 8.906867 AGGATATTCATGGTTACTTTTCATGTG 58.093 33.333 0.00 0.00 39.25 3.21
3865 6303 8.137437 GGATATTCATGGTTACTTTTCATGTGG 58.863 37.037 0.00 0.00 39.25 4.17
3866 6304 6.916360 ATTCATGGTTACTTTTCATGTGGT 57.084 33.333 0.00 0.00 39.25 4.16
3867 6305 5.703978 TCATGGTTACTTTTCATGTGGTG 57.296 39.130 0.00 0.00 39.25 4.17
3868 6306 4.522405 TCATGGTTACTTTTCATGTGGTGG 59.478 41.667 0.00 0.00 39.25 4.61
3869 6307 4.171878 TGGTTACTTTTCATGTGGTGGA 57.828 40.909 0.00 0.00 0.00 4.02
3870 6308 4.141287 TGGTTACTTTTCATGTGGTGGAG 58.859 43.478 0.00 0.00 0.00 3.86
3871 6309 3.057526 GGTTACTTTTCATGTGGTGGAGC 60.058 47.826 0.00 0.00 0.00 4.70
3872 6310 2.363306 ACTTTTCATGTGGTGGAGCA 57.637 45.000 0.00 0.00 0.00 4.26
3873 6311 2.233271 ACTTTTCATGTGGTGGAGCAG 58.767 47.619 0.00 0.00 0.00 4.24
3874 6312 0.961019 TTTTCATGTGGTGGAGCAGC 59.039 50.000 0.00 0.00 0.00 5.25
3875 6313 0.178995 TTTCATGTGGTGGAGCAGCA 60.179 50.000 0.00 0.00 39.63 4.41
3876 6314 0.178995 TTCATGTGGTGGAGCAGCAA 60.179 50.000 0.00 0.00 43.50 3.91
3877 6315 0.890542 TCATGTGGTGGAGCAGCAAC 60.891 55.000 0.00 0.00 43.50 4.17
3878 6316 1.604593 ATGTGGTGGAGCAGCAACC 60.605 57.895 0.00 0.00 43.50 3.77
3879 6317 2.072874 ATGTGGTGGAGCAGCAACCT 62.073 55.000 11.89 0.00 43.50 3.50
3880 6318 1.968540 GTGGTGGAGCAGCAACCTC 60.969 63.158 11.89 7.55 43.50 3.85
3881 6319 2.743928 GGTGGAGCAGCAACCTCG 60.744 66.667 9.53 0.00 0.00 4.63
3882 6320 3.426568 GTGGAGCAGCAACCTCGC 61.427 66.667 9.53 0.00 0.00 5.03
3883 6321 3.939939 TGGAGCAGCAACCTCGCA 61.940 61.111 9.53 0.00 0.00 5.10
3884 6322 3.123620 GGAGCAGCAACCTCGCAG 61.124 66.667 0.00 0.00 0.00 5.18
3885 6323 3.797546 GAGCAGCAACCTCGCAGC 61.798 66.667 0.00 0.00 44.07 5.25
3887 6325 3.797546 GCAGCAACCTCGCAGCTC 61.798 66.667 0.00 0.00 40.87 4.09
3888 6326 2.357881 CAGCAACCTCGCAGCTCA 60.358 61.111 0.00 0.00 36.26 4.26
3889 6327 2.047465 AGCAACCTCGCAGCTCAG 60.047 61.111 0.00 0.00 32.05 3.35
3890 6328 2.358003 GCAACCTCGCAGCTCAGT 60.358 61.111 0.00 0.00 0.00 3.41
3891 6329 2.386660 GCAACCTCGCAGCTCAGTC 61.387 63.158 0.00 0.00 0.00 3.51
3892 6330 1.739562 CAACCTCGCAGCTCAGTCC 60.740 63.158 0.00 0.00 0.00 3.85
3893 6331 2.210013 AACCTCGCAGCTCAGTCCA 61.210 57.895 0.00 0.00 0.00 4.02
3894 6332 1.548357 AACCTCGCAGCTCAGTCCAT 61.548 55.000 0.00 0.00 0.00 3.41
3895 6333 1.521010 CCTCGCAGCTCAGTCCATG 60.521 63.158 0.00 0.00 0.00 3.66
3896 6334 2.125391 TCGCAGCTCAGTCCATGC 60.125 61.111 0.00 0.00 35.32 4.06
3897 6335 3.200593 CGCAGCTCAGTCCATGCC 61.201 66.667 0.00 0.00 35.22 4.40
3898 6336 2.271497 GCAGCTCAGTCCATGCCT 59.729 61.111 0.00 0.00 32.49 4.75
3899 6337 2.113433 GCAGCTCAGTCCATGCCTG 61.113 63.158 4.66 4.66 33.59 4.85
3900 6338 2.113433 CAGCTCAGTCCATGCCTGC 61.113 63.158 5.90 0.00 0.00 4.85
3901 6339 2.271497 GCTCAGTCCATGCCTGCT 59.729 61.111 5.90 0.00 0.00 4.24
3902 6340 2.113433 GCTCAGTCCATGCCTGCTG 61.113 63.158 5.90 2.74 0.00 4.41
3903 6341 1.600638 CTCAGTCCATGCCTGCTGA 59.399 57.895 5.90 6.27 36.65 4.26
3904 6342 0.743701 CTCAGTCCATGCCTGCTGAC 60.744 60.000 5.90 0.00 34.68 3.51
3905 6343 1.002990 CAGTCCATGCCTGCTGACA 60.003 57.895 0.00 0.00 0.00 3.58
3906 6344 0.607217 CAGTCCATGCCTGCTGACAA 60.607 55.000 0.00 0.00 0.00 3.18
3907 6345 0.322277 AGTCCATGCCTGCTGACAAG 60.322 55.000 0.00 0.00 0.00 3.16
3908 6346 0.607489 GTCCATGCCTGCTGACAAGT 60.607 55.000 0.00 0.00 0.00 3.16
3909 6347 0.321919 TCCATGCCTGCTGACAAGTC 60.322 55.000 0.00 0.00 0.00 3.01
3910 6348 0.322277 CCATGCCTGCTGACAAGTCT 60.322 55.000 1.53 0.00 0.00 3.24
3911 6349 1.531423 CATGCCTGCTGACAAGTCTT 58.469 50.000 1.53 0.00 0.00 3.01
3912 6350 1.884579 CATGCCTGCTGACAAGTCTTT 59.115 47.619 1.53 0.00 0.00 2.52
3913 6351 1.311859 TGCCTGCTGACAAGTCTTTG 58.688 50.000 1.53 0.00 40.24 2.77
3914 6352 0.039708 GCCTGCTGACAAGTCTTTGC 60.040 55.000 1.53 4.53 37.85 3.68
3915 6353 0.595095 CCTGCTGACAAGTCTTTGCC 59.405 55.000 1.53 0.00 37.85 4.52
3916 6354 1.311859 CTGCTGACAAGTCTTTGCCA 58.688 50.000 1.53 0.00 37.85 4.92
3917 6355 1.266175 CTGCTGACAAGTCTTTGCCAG 59.734 52.381 1.53 0.07 44.68 4.85
3918 6356 1.312815 GCTGACAAGTCTTTGCCAGT 58.687 50.000 5.68 0.00 44.00 4.00
3919 6357 1.265365 GCTGACAAGTCTTTGCCAGTC 59.735 52.381 5.68 0.00 44.00 3.51
3920 6358 1.528586 CTGACAAGTCTTTGCCAGTCG 59.471 52.381 1.53 0.00 39.22 4.18
3921 6359 0.868406 GACAAGTCTTTGCCAGTCGG 59.132 55.000 0.00 0.00 37.85 4.79
3934 6372 2.835027 CCAGTCGGCTATTTTCTACCC 58.165 52.381 0.00 0.00 0.00 3.69
3935 6373 2.169769 CCAGTCGGCTATTTTCTACCCA 59.830 50.000 0.00 0.00 0.00 4.51
3936 6374 3.195661 CAGTCGGCTATTTTCTACCCAC 58.804 50.000 0.00 0.00 0.00 4.61
3937 6375 2.835764 AGTCGGCTATTTTCTACCCACA 59.164 45.455 0.00 0.00 0.00 4.17
3938 6376 3.262405 AGTCGGCTATTTTCTACCCACAA 59.738 43.478 0.00 0.00 0.00 3.33
3939 6377 3.373130 GTCGGCTATTTTCTACCCACAAC 59.627 47.826 0.00 0.00 0.00 3.32
3940 6378 2.350498 CGGCTATTTTCTACCCACAACG 59.650 50.000 0.00 0.00 0.00 4.10
3941 6379 3.602483 GGCTATTTTCTACCCACAACGA 58.398 45.455 0.00 0.00 0.00 3.85
3942 6380 4.004982 GGCTATTTTCTACCCACAACGAA 58.995 43.478 0.00 0.00 0.00 3.85
3943 6381 4.638865 GGCTATTTTCTACCCACAACGAAT 59.361 41.667 0.00 0.00 0.00 3.34
3944 6382 5.220796 GGCTATTTTCTACCCACAACGAATC 60.221 44.000 0.00 0.00 0.00 2.52
3945 6383 5.353123 GCTATTTTCTACCCACAACGAATCA 59.647 40.000 0.00 0.00 0.00 2.57
3946 6384 5.622770 ATTTTCTACCCACAACGAATCAC 57.377 39.130 0.00 0.00 0.00 3.06
3947 6385 3.755112 TTCTACCCACAACGAATCACA 57.245 42.857 0.00 0.00 0.00 3.58
3948 6386 3.973206 TCTACCCACAACGAATCACAT 57.027 42.857 0.00 0.00 0.00 3.21
3949 6387 3.857052 TCTACCCACAACGAATCACATC 58.143 45.455 0.00 0.00 0.00 3.06
3951 6389 0.096976 CCCACAACGAATCACATCGC 59.903 55.000 0.00 0.00 46.51 4.58
3952 6390 0.795698 CCACAACGAATCACATCGCA 59.204 50.000 0.00 0.00 46.51 5.10
3953 6391 1.196581 CCACAACGAATCACATCGCAA 59.803 47.619 0.00 0.00 46.51 4.85
3954 6392 2.159531 CCACAACGAATCACATCGCAAT 60.160 45.455 0.00 0.00 46.51 3.56
3955 6393 3.063316 CCACAACGAATCACATCGCAATA 59.937 43.478 0.00 0.00 46.51 1.90
3956 6394 4.260743 CCACAACGAATCACATCGCAATAT 60.261 41.667 0.00 0.00 46.51 1.28
3957 6395 5.265477 CACAACGAATCACATCGCAATATT 58.735 37.500 0.00 0.00 46.51 1.28
3958 6396 5.738693 CACAACGAATCACATCGCAATATTT 59.261 36.000 0.00 0.00 46.51 1.40
3959 6397 5.738693 ACAACGAATCACATCGCAATATTTG 59.261 36.000 0.00 0.00 46.51 2.32
3960 6398 4.847633 ACGAATCACATCGCAATATTTGG 58.152 39.130 0.00 0.00 46.51 3.28
3961 6399 3.665409 CGAATCACATCGCAATATTTGGC 59.335 43.478 0.00 0.00 35.85 4.52
3962 6400 4.555313 CGAATCACATCGCAATATTTGGCT 60.555 41.667 0.00 0.00 35.85 4.75
3963 6401 4.924305 ATCACATCGCAATATTTGGCTT 57.076 36.364 0.00 0.00 0.00 4.35
3964 6402 4.031418 TCACATCGCAATATTTGGCTTG 57.969 40.909 0.00 0.00 0.00 4.01
3965 6403 3.443329 TCACATCGCAATATTTGGCTTGT 59.557 39.130 0.00 0.00 0.00 3.16
3966 6404 3.548668 CACATCGCAATATTTGGCTTGTG 59.451 43.478 12.26 12.26 36.33 3.33
3967 6405 2.937469 TCGCAATATTTGGCTTGTGG 57.063 45.000 0.00 0.00 34.45 4.17
3968 6406 1.135141 TCGCAATATTTGGCTTGTGGC 60.135 47.619 0.00 0.00 40.90 5.01
3969 6407 1.135024 CGCAATATTTGGCTTGTGGCT 60.135 47.619 0.00 0.00 41.46 4.75
3970 6408 2.543641 GCAATATTTGGCTTGTGGCTC 58.456 47.619 0.00 0.00 41.46 4.70
3971 6409 2.094078 GCAATATTTGGCTTGTGGCTCA 60.094 45.455 0.00 0.00 41.46 4.26
3972 6410 3.431207 GCAATATTTGGCTTGTGGCTCAT 60.431 43.478 0.00 0.00 41.46 2.90
3973 6411 4.116961 CAATATTTGGCTTGTGGCTCATG 58.883 43.478 0.00 0.00 41.46 3.07
3974 6412 0.248289 ATTTGGCTTGTGGCTCATGC 59.752 50.000 16.36 16.36 43.57 4.06
3975 6413 0.828762 TTTGGCTTGTGGCTCATGCT 60.829 50.000 21.60 0.00 43.71 3.79
3976 6414 1.529152 TTGGCTTGTGGCTCATGCTG 61.529 55.000 21.60 2.39 43.71 4.41
3977 6415 2.181021 GCTTGTGGCTCATGCTGC 59.819 61.111 17.10 0.00 41.86 5.25
3978 6416 2.632544 GCTTGTGGCTCATGCTGCA 61.633 57.895 17.10 4.13 41.86 4.41
3979 6417 1.211969 CTTGTGGCTCATGCTGCAC 59.788 57.895 3.57 0.00 39.59 4.57
3980 6418 2.523184 CTTGTGGCTCATGCTGCACG 62.523 60.000 3.57 0.00 39.59 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
102 104 4.018484 TGAAATTTCCAGGGCCAAAATG 57.982 40.909 15.48 0.00 0.00 2.32
107 109 2.459644 CTGATGAAATTTCCAGGGCCA 58.540 47.619 15.48 4.03 0.00 5.36
168 170 5.530519 TTCAGCGACAATTCATACACTTC 57.469 39.130 0.00 0.00 0.00 3.01
251 253 3.007506 TGTCGTTGACCCAATACACATCT 59.992 43.478 0.00 0.00 0.00 2.90
377 379 0.686789 TGCTATGGTCATCGATGGGG 59.313 55.000 24.61 9.88 0.00 4.96
690 692 3.146726 TATAGCCGGCACCGCAGAC 62.147 63.158 31.54 0.00 38.24 3.51
806 811 8.738645 AAGATGTATCCAAGTTACAAATCCTC 57.261 34.615 0.00 0.00 33.55 3.71
888 897 3.122278 CACTAATGTTACCACACGAACGG 59.878 47.826 0.00 0.00 35.03 4.44
889 898 3.737266 ACACTAATGTTACCACACGAACG 59.263 43.478 0.00 0.00 34.46 3.95
948 957 5.560724 CAGTTGAGGTGAAAATCTTCCCTA 58.439 41.667 0.00 0.00 34.31 3.53
1185 1194 8.193953 TCACACAAGCATATCCAGATCTATTA 57.806 34.615 0.00 0.00 0.00 0.98
1250 1259 6.625740 GCATTTGCAGTGATAACCAACATAGT 60.626 38.462 5.46 0.00 41.59 2.12
1374 1386 6.980051 AGTATTTTCGCTGTAAACCTTAGG 57.020 37.500 0.00 0.00 0.00 2.69
1495 1612 5.674525 TGATAAGATGCATCCGAAAACTCT 58.325 37.500 23.06 0.00 0.00 3.24
1496 1613 5.991328 TGATAAGATGCATCCGAAAACTC 57.009 39.130 23.06 10.67 0.00 3.01
1949 2075 1.827969 TGCCTTCTCCAGCTCTTCTAC 59.172 52.381 0.00 0.00 0.00 2.59
2067 2193 1.751924 ACTGCTCGATGACCTTAGACC 59.248 52.381 0.00 0.00 0.00 3.85
2099 2226 3.624861 ACTGCGACCTCATTGATGAATTC 59.375 43.478 0.00 0.00 36.18 2.17
2152 2279 3.817084 TGAGACAACATCCAAAGAGCTTG 59.183 43.478 0.00 0.00 34.52 4.01
2174 2301 0.182775 AGCAGTGGAACCTCGGTTTT 59.817 50.000 2.39 0.00 38.60 2.43
2254 2394 3.450817 CACCCCAAGTCAAAGAAAAACCT 59.549 43.478 0.00 0.00 0.00 3.50
2534 2674 4.448210 AGTACCACACCAAAACTGTACAG 58.552 43.478 21.44 21.44 32.92 2.74
2668 2808 3.452474 CTCAAGGACCTGAGAATTAGCG 58.548 50.000 12.96 0.00 44.82 4.26
2832 4757 6.556974 TCTGTTCTCCATTTCTCAGATCAT 57.443 37.500 0.00 0.00 0.00 2.45
2880 4805 1.474330 TTGCCGAGCAGATCTACTCA 58.526 50.000 20.54 1.74 40.61 3.41
2962 4887 3.851955 TAGCGTGGTAGGCTAGCC 58.148 61.111 27.19 27.19 40.20 3.93
3006 4932 7.029563 CACAAAAGAGGGAAAGAAATTATCCG 58.970 38.462 0.00 0.00 33.90 4.18
3052 4978 5.720041 AGTACCAATCTGACTAGCCTGTAAA 59.280 40.000 0.00 0.00 0.00 2.01
3090 5033 6.304624 ACTGATACAATCATGATGCCTGAAT 58.695 36.000 9.46 0.00 38.85 2.57
3143 5107 9.396022 CAAGATAACAAAACCAGGTCTACATAT 57.604 33.333 0.00 0.00 0.00 1.78
3153 5119 7.206981 ACACATCTCAAGATAACAAAACCAG 57.793 36.000 0.00 0.00 32.63 4.00
3154 5120 7.936847 ACTACACATCTCAAGATAACAAAACCA 59.063 33.333 0.00 0.00 32.63 3.67
3156 5122 8.988934 TCACTACACATCTCAAGATAACAAAAC 58.011 33.333 0.00 0.00 32.63 2.43
3165 5131 6.992123 ACAACAATTCACTACACATCTCAAGA 59.008 34.615 0.00 0.00 0.00 3.02
3275 5245 2.422127 GCAATGTACTAACGGTGGCAAT 59.578 45.455 0.00 0.00 0.00 3.56
3300 5270 4.491234 TTAAATGAAGCGCCGAGAAAAA 57.509 36.364 2.29 0.00 0.00 1.94
3352 5324 2.057137 ATGCCTGTCATATTTGCGGT 57.943 45.000 0.00 0.00 32.59 5.68
3353 5325 2.358582 TGAATGCCTGTCATATTTGCGG 59.641 45.455 0.00 0.00 34.33 5.69
3396 5369 5.579047 AGCTGGATATATAGTGCACTCTCT 58.421 41.667 25.56 12.06 0.00 3.10
3401 5374 4.808414 TGGAGCTGGATATATAGTGCAC 57.192 45.455 9.40 9.40 0.00 4.57
3421 5396 8.661352 AACCTCAGTTAATTTGTGGAATTTTG 57.339 30.769 14.33 0.00 38.80 2.44
3429 5404 5.336451 GGCCCTTAACCTCAGTTAATTTGTG 60.336 44.000 0.00 0.00 45.16 3.33
3430 5405 4.770531 GGCCCTTAACCTCAGTTAATTTGT 59.229 41.667 0.00 0.00 45.16 2.83
3431 5406 5.016831 AGGCCCTTAACCTCAGTTAATTTG 58.983 41.667 0.00 0.00 45.16 2.32
3432 5407 5.270979 AGGCCCTTAACCTCAGTTAATTT 57.729 39.130 0.00 0.00 45.16 1.82
3433 5408 4.948062 AGGCCCTTAACCTCAGTTAATT 57.052 40.909 0.00 0.00 45.16 1.40
3477 5452 3.810896 GAAATCACGCCCGCACCC 61.811 66.667 0.00 0.00 0.00 4.61
3478 5453 2.746277 AGAAATCACGCCCGCACC 60.746 61.111 0.00 0.00 0.00 5.01
3479 5454 2.240612 GACAGAAATCACGCCCGCAC 62.241 60.000 0.00 0.00 0.00 5.34
3481 5456 1.741770 AGACAGAAATCACGCCCGC 60.742 57.895 0.00 0.00 0.00 6.13
3482 5457 0.670546 ACAGACAGAAATCACGCCCG 60.671 55.000 0.00 0.00 0.00 6.13
3484 5459 1.512926 ACACAGACAGAAATCACGCC 58.487 50.000 0.00 0.00 0.00 5.68
3485 5460 3.609103 AAACACAGACAGAAATCACGC 57.391 42.857 0.00 0.00 0.00 5.34
3486 5461 6.019075 TCAGTTAAACACAGACAGAAATCACG 60.019 38.462 0.00 0.00 0.00 4.35
3488 5463 6.483307 CCTCAGTTAAACACAGACAGAAATCA 59.517 38.462 0.00 0.00 0.00 2.57
3489 5464 6.483640 ACCTCAGTTAAACACAGACAGAAATC 59.516 38.462 0.00 0.00 0.00 2.17
3491 5466 5.741011 ACCTCAGTTAAACACAGACAGAAA 58.259 37.500 0.00 0.00 0.00 2.52
3492 5467 5.353394 ACCTCAGTTAAACACAGACAGAA 57.647 39.130 0.00 0.00 0.00 3.02
3493 5468 5.353394 AACCTCAGTTAAACACAGACAGA 57.647 39.130 0.00 0.00 33.27 3.41
3494 5469 6.202954 CCTTAACCTCAGTTAAACACAGACAG 59.797 42.308 0.61 0.00 45.46 3.51
3495 5470 6.053005 CCTTAACCTCAGTTAAACACAGACA 58.947 40.000 0.61 0.00 45.46 3.41
3496 5471 5.469084 CCCTTAACCTCAGTTAAACACAGAC 59.531 44.000 0.61 0.00 45.46 3.51
3497 5472 5.617252 CCCTTAACCTCAGTTAAACACAGA 58.383 41.667 0.61 0.00 45.46 3.41
3498 5473 4.215613 GCCCTTAACCTCAGTTAAACACAG 59.784 45.833 0.61 0.00 45.46 3.66
3499 5474 4.139038 GCCCTTAACCTCAGTTAAACACA 58.861 43.478 0.61 0.00 45.46 3.72
3500 5475 3.504906 GGCCCTTAACCTCAGTTAAACAC 59.495 47.826 0.00 0.00 45.46 3.32
3501 5476 3.396611 AGGCCCTTAACCTCAGTTAAACA 59.603 43.478 0.00 0.00 45.46 2.83
3503 5478 4.734843 AAGGCCCTTAACCTCAGTTAAA 57.265 40.909 0.00 0.00 45.46 1.52
3504 5479 4.734843 AAAGGCCCTTAACCTCAGTTAA 57.265 40.909 0.00 0.00 44.34 2.01
3506 5481 3.561528 GCTAAAGGCCCTTAACCTCAGTT 60.562 47.826 0.00 0.00 36.14 3.16
3507 5482 2.026169 GCTAAAGGCCCTTAACCTCAGT 60.026 50.000 0.00 0.00 36.14 3.41
3533 5970 3.081329 GACAGGAAGTCTACCATACGC 57.919 52.381 0.00 0.00 44.09 4.42
3573 6010 3.700863 AGGGATTACCAGCACCTAGTA 57.299 47.619 0.00 0.00 43.89 1.82
3596 6033 4.002906 TCGAAGGTTTGCTCTGTACAAT 57.997 40.909 0.00 0.00 0.00 2.71
3615 6052 3.057315 ACATGGCTTGTTTCTGGATTTCG 60.057 43.478 0.00 0.00 33.74 3.46
3619 6057 7.716799 TTAATTACATGGCTTGTTTCTGGAT 57.283 32.000 11.53 0.00 39.87 3.41
3643 6081 8.820831 CCTATCTCTGTCCCTAATAAATCACAT 58.179 37.037 0.00 0.00 0.00 3.21
3644 6082 7.256332 GCCTATCTCTGTCCCTAATAAATCACA 60.256 40.741 0.00 0.00 0.00 3.58
3645 6083 7.038658 AGCCTATCTCTGTCCCTAATAAATCAC 60.039 40.741 0.00 0.00 0.00 3.06
3652 6090 3.116551 ACCAGCCTATCTCTGTCCCTAAT 60.117 47.826 0.00 0.00 0.00 1.73
3683 6121 9.393512 GATACTATCTCTAATTCTAGCCCGTAA 57.606 37.037 0.00 0.00 0.00 3.18
3684 6122 7.710044 CGATACTATCTCTAATTCTAGCCCGTA 59.290 40.741 0.00 0.00 0.00 4.02
3686 6124 6.762187 TCGATACTATCTCTAATTCTAGCCCG 59.238 42.308 0.00 0.00 0.00 6.13
3707 6145 1.153745 GCCTCGCAAGTCAGTCGAT 60.154 57.895 0.00 0.00 39.48 3.59
3710 6148 1.446966 GAGGCCTCGCAAGTCAGTC 60.447 63.158 19.06 0.00 39.48 3.51
3711 6149 2.659610 GAGGCCTCGCAAGTCAGT 59.340 61.111 19.06 0.00 39.48 3.41
3712 6150 2.125350 GGAGGCCTCGCAAGTCAG 60.125 66.667 26.36 0.00 39.48 3.51
3713 6151 4.069232 CGGAGGCCTCGCAAGTCA 62.069 66.667 26.36 0.00 39.48 3.41
3714 6152 4.070552 ACGGAGGCCTCGCAAGTC 62.071 66.667 26.36 10.42 39.48 3.01
3715 6153 4.379243 CACGGAGGCCTCGCAAGT 62.379 66.667 26.36 19.19 39.48 3.16
3716 6154 3.997064 CTCACGGAGGCCTCGCAAG 62.997 68.421 26.36 18.57 0.00 4.01
3717 6155 4.069232 CTCACGGAGGCCTCGCAA 62.069 66.667 26.36 10.75 0.00 4.85
3719 6157 4.500116 GACTCACGGAGGCCTCGC 62.500 72.222 26.36 17.63 30.04 5.03
3720 6158 3.062466 TGACTCACGGAGGCCTCG 61.062 66.667 26.36 22.21 36.76 4.63
3721 6159 2.574399 GTGACTCACGGAGGCCTC 59.426 66.667 25.59 25.59 36.76 4.70
3730 6168 2.004017 TGGTTTGTTGTCGTGACTCAC 58.996 47.619 0.00 0.00 0.00 3.51
3731 6169 2.388310 TGGTTTGTTGTCGTGACTCA 57.612 45.000 1.23 0.00 0.00 3.41
3732 6170 3.311322 TGAATGGTTTGTTGTCGTGACTC 59.689 43.478 1.23 0.00 0.00 3.36
3733 6171 3.275143 TGAATGGTTTGTTGTCGTGACT 58.725 40.909 1.23 0.00 0.00 3.41
3734 6172 3.684103 TGAATGGTTTGTTGTCGTGAC 57.316 42.857 0.00 0.00 0.00 3.67
3735 6173 3.942115 TCTTGAATGGTTTGTTGTCGTGA 59.058 39.130 0.00 0.00 0.00 4.35
3736 6174 4.285807 TCTTGAATGGTTTGTTGTCGTG 57.714 40.909 0.00 0.00 0.00 4.35
3737 6175 4.733523 GCTTCTTGAATGGTTTGTTGTCGT 60.734 41.667 0.00 0.00 0.00 4.34
3738 6176 3.730715 GCTTCTTGAATGGTTTGTTGTCG 59.269 43.478 0.00 0.00 0.00 4.35
3739 6177 4.681744 TGCTTCTTGAATGGTTTGTTGTC 58.318 39.130 0.00 0.00 0.00 3.18
3740 6178 4.685924 CTGCTTCTTGAATGGTTTGTTGT 58.314 39.130 0.00 0.00 0.00 3.32
3741 6179 3.492011 GCTGCTTCTTGAATGGTTTGTTG 59.508 43.478 0.00 0.00 0.00 3.33
3742 6180 3.132646 TGCTGCTTCTTGAATGGTTTGTT 59.867 39.130 0.00 0.00 0.00 2.83
3743 6181 2.694628 TGCTGCTTCTTGAATGGTTTGT 59.305 40.909 0.00 0.00 0.00 2.83
3744 6182 3.374220 TGCTGCTTCTTGAATGGTTTG 57.626 42.857 0.00 0.00 0.00 2.93
3745 6183 4.405116 TTTGCTGCTTCTTGAATGGTTT 57.595 36.364 0.00 0.00 0.00 3.27
3746 6184 4.405116 TTTTGCTGCTTCTTGAATGGTT 57.595 36.364 0.00 0.00 0.00 3.67
3747 6185 4.405116 TTTTTGCTGCTTCTTGAATGGT 57.595 36.364 0.00 0.00 0.00 3.55
3748 6186 5.106830 GGAATTTTTGCTGCTTCTTGAATGG 60.107 40.000 0.00 0.00 0.00 3.16
3749 6187 5.699458 AGGAATTTTTGCTGCTTCTTGAATG 59.301 36.000 0.00 0.00 0.00 2.67
3750 6188 5.861727 AGGAATTTTTGCTGCTTCTTGAAT 58.138 33.333 0.00 0.00 0.00 2.57
3751 6189 5.280654 AGGAATTTTTGCTGCTTCTTGAA 57.719 34.783 0.00 0.00 0.00 2.69
3752 6190 4.942761 AGGAATTTTTGCTGCTTCTTGA 57.057 36.364 0.00 0.00 0.00 3.02
3753 6191 5.531634 TGTAGGAATTTTTGCTGCTTCTTG 58.468 37.500 0.00 0.00 34.93 3.02
3754 6192 5.789643 TGTAGGAATTTTTGCTGCTTCTT 57.210 34.783 0.00 0.00 34.93 2.52
3755 6193 5.789643 TTGTAGGAATTTTTGCTGCTTCT 57.210 34.783 0.00 0.00 34.93 2.85
3756 6194 6.646240 TGATTTGTAGGAATTTTTGCTGCTTC 59.354 34.615 0.00 0.00 34.93 3.86
3757 6195 6.523840 TGATTTGTAGGAATTTTTGCTGCTT 58.476 32.000 0.00 0.00 34.93 3.91
3758 6196 6.100404 TGATTTGTAGGAATTTTTGCTGCT 57.900 33.333 0.00 0.00 34.93 4.24
3759 6197 6.783892 TTGATTTGTAGGAATTTTTGCTGC 57.216 33.333 0.00 0.00 34.47 5.25
3760 6198 8.592105 TCTTTGATTTGTAGGAATTTTTGCTG 57.408 30.769 0.00 0.00 31.99 4.41
3761 6199 8.641541 TCTCTTTGATTTGTAGGAATTTTTGCT 58.358 29.630 0.00 0.00 34.84 3.91
3762 6200 8.816640 TCTCTTTGATTTGTAGGAATTTTTGC 57.183 30.769 0.00 0.00 0.00 3.68
3770 6208 9.177608 CCATGTTTATCTCTTTGATTTGTAGGA 57.822 33.333 0.00 0.00 36.65 2.94
3771 6209 8.960591 ACCATGTTTATCTCTTTGATTTGTAGG 58.039 33.333 0.00 0.00 36.65 3.18
3772 6210 9.994432 GACCATGTTTATCTCTTTGATTTGTAG 57.006 33.333 0.00 0.00 36.65 2.74
3773 6211 8.956426 GGACCATGTTTATCTCTTTGATTTGTA 58.044 33.333 0.00 0.00 36.65 2.41
3774 6212 7.362056 CGGACCATGTTTATCTCTTTGATTTGT 60.362 37.037 0.00 0.00 36.65 2.83
3775 6213 6.968904 CGGACCATGTTTATCTCTTTGATTTG 59.031 38.462 0.00 0.00 36.65 2.32
3776 6214 6.884295 TCGGACCATGTTTATCTCTTTGATTT 59.116 34.615 0.00 0.00 36.65 2.17
3777 6215 6.414732 TCGGACCATGTTTATCTCTTTGATT 58.585 36.000 0.00 0.00 36.65 2.57
3778 6216 5.989477 TCGGACCATGTTTATCTCTTTGAT 58.011 37.500 0.00 0.00 39.11 2.57
3779 6217 5.186992 TCTCGGACCATGTTTATCTCTTTGA 59.813 40.000 0.00 0.00 0.00 2.69
3780 6218 5.419542 TCTCGGACCATGTTTATCTCTTTG 58.580 41.667 0.00 0.00 0.00 2.77
3781 6219 5.677319 TCTCGGACCATGTTTATCTCTTT 57.323 39.130 0.00 0.00 0.00 2.52
3782 6220 5.677319 TTCTCGGACCATGTTTATCTCTT 57.323 39.130 0.00 0.00 0.00 2.85
3783 6221 5.677319 TTTCTCGGACCATGTTTATCTCT 57.323 39.130 0.00 0.00 0.00 3.10
3784 6222 5.817816 ACATTTCTCGGACCATGTTTATCTC 59.182 40.000 0.00 0.00 0.00 2.75
3785 6223 5.586243 CACATTTCTCGGACCATGTTTATCT 59.414 40.000 0.00 0.00 0.00 1.98
3786 6224 5.584649 TCACATTTCTCGGACCATGTTTATC 59.415 40.000 0.00 0.00 0.00 1.75
3787 6225 5.496556 TCACATTTCTCGGACCATGTTTAT 58.503 37.500 0.00 0.00 0.00 1.40
3788 6226 4.900684 TCACATTTCTCGGACCATGTTTA 58.099 39.130 0.00 0.00 0.00 2.01
3789 6227 3.750371 TCACATTTCTCGGACCATGTTT 58.250 40.909 0.00 0.00 0.00 2.83
3790 6228 3.417069 TCACATTTCTCGGACCATGTT 57.583 42.857 0.00 0.00 0.00 2.71
3791 6229 3.074412 GTTCACATTTCTCGGACCATGT 58.926 45.455 0.00 0.00 0.00 3.21
3792 6230 3.073678 TGTTCACATTTCTCGGACCATG 58.926 45.455 0.00 0.00 0.00 3.66
3793 6231 3.417069 TGTTCACATTTCTCGGACCAT 57.583 42.857 0.00 0.00 0.00 3.55
3794 6232 2.920724 TGTTCACATTTCTCGGACCA 57.079 45.000 0.00 0.00 0.00 4.02
3795 6233 2.420022 CCATGTTCACATTTCTCGGACC 59.580 50.000 0.00 0.00 33.61 4.46
3796 6234 2.159517 GCCATGTTCACATTTCTCGGAC 60.160 50.000 0.00 0.00 33.61 4.79
3797 6235 2.083774 GCCATGTTCACATTTCTCGGA 58.916 47.619 0.00 0.00 33.61 4.55
3798 6236 1.811965 TGCCATGTTCACATTTCTCGG 59.188 47.619 0.00 0.00 33.61 4.63
3799 6237 2.743664 TCTGCCATGTTCACATTTCTCG 59.256 45.455 0.00 0.00 33.61 4.04
3800 6238 4.639310 AGATCTGCCATGTTCACATTTCTC 59.361 41.667 0.00 0.00 33.61 2.87
3801 6239 4.597004 AGATCTGCCATGTTCACATTTCT 58.403 39.130 0.00 0.00 33.61 2.52
3802 6240 4.397103 TGAGATCTGCCATGTTCACATTTC 59.603 41.667 0.00 0.00 33.61 2.17
3803 6241 4.338012 TGAGATCTGCCATGTTCACATTT 58.662 39.130 0.00 0.00 33.61 2.32
3804 6242 3.945921 CTGAGATCTGCCATGTTCACATT 59.054 43.478 0.00 0.00 33.61 2.71
3805 6243 3.542648 CTGAGATCTGCCATGTTCACAT 58.457 45.455 0.00 0.00 36.96 3.21
3806 6244 2.355412 CCTGAGATCTGCCATGTTCACA 60.355 50.000 0.00 0.00 0.00 3.58
3807 6245 2.286872 CCTGAGATCTGCCATGTTCAC 58.713 52.381 0.00 0.00 0.00 3.18
3808 6246 1.407851 GCCTGAGATCTGCCATGTTCA 60.408 52.381 0.00 0.00 0.00 3.18
3809 6247 1.307097 GCCTGAGATCTGCCATGTTC 58.693 55.000 0.00 0.00 0.00 3.18
3810 6248 0.622136 TGCCTGAGATCTGCCATGTT 59.378 50.000 0.00 0.00 0.00 2.71
3811 6249 0.180642 CTGCCTGAGATCTGCCATGT 59.819 55.000 0.00 0.00 0.00 3.21
3812 6250 1.167155 GCTGCCTGAGATCTGCCATG 61.167 60.000 0.00 0.00 0.00 3.66
3813 6251 1.148723 GCTGCCTGAGATCTGCCAT 59.851 57.895 0.00 0.00 0.00 4.40
3814 6252 2.295602 TGCTGCCTGAGATCTGCCA 61.296 57.895 0.00 0.00 0.00 4.92
3815 6253 1.818785 GTGCTGCCTGAGATCTGCC 60.819 63.158 0.00 0.00 0.00 4.85
3816 6254 2.172372 CGTGCTGCCTGAGATCTGC 61.172 63.158 0.00 0.00 0.00 4.26
3817 6255 2.172372 GCGTGCTGCCTGAGATCTG 61.172 63.158 0.00 0.00 37.76 2.90
3818 6256 2.186384 GCGTGCTGCCTGAGATCT 59.814 61.111 0.00 0.00 37.76 2.75
3819 6257 2.125391 TGCGTGCTGCCTGAGATC 60.125 61.111 0.00 0.00 45.60 2.75
3820 6258 2.125229 CTGCGTGCTGCCTGAGAT 60.125 61.111 0.00 0.00 45.60 2.75
3821 6259 3.292500 CTCTGCGTGCTGCCTGAGA 62.293 63.158 12.57 3.92 45.60 3.27
3822 6260 2.814341 CTCTGCGTGCTGCCTGAG 60.814 66.667 0.00 0.00 45.60 3.35
3823 6261 4.383861 CCTCTGCGTGCTGCCTGA 62.384 66.667 0.00 0.00 45.60 3.86
3824 6262 2.302199 TATCCTCTGCGTGCTGCCTG 62.302 60.000 0.00 0.00 45.60 4.85
3825 6263 1.406065 ATATCCTCTGCGTGCTGCCT 61.406 55.000 0.00 0.00 45.60 4.75
3826 6264 0.533755 AATATCCTCTGCGTGCTGCC 60.534 55.000 0.00 0.00 45.60 4.85
3827 6265 0.864455 GAATATCCTCTGCGTGCTGC 59.136 55.000 0.00 0.00 46.70 5.25
3828 6266 2.229675 TGAATATCCTCTGCGTGCTG 57.770 50.000 0.00 0.00 0.00 4.41
3829 6267 2.549563 CCATGAATATCCTCTGCGTGCT 60.550 50.000 0.00 0.00 0.00 4.40
3830 6268 1.802960 CCATGAATATCCTCTGCGTGC 59.197 52.381 0.00 0.00 0.00 5.34
3831 6269 3.117491 ACCATGAATATCCTCTGCGTG 57.883 47.619 0.00 0.00 0.00 5.34
3832 6270 3.845781 AACCATGAATATCCTCTGCGT 57.154 42.857 0.00 0.00 0.00 5.24
3833 6271 4.887748 AGTAACCATGAATATCCTCTGCG 58.112 43.478 0.00 0.00 0.00 5.18
3834 6272 7.283127 TGAAAAGTAACCATGAATATCCTCTGC 59.717 37.037 0.00 0.00 0.00 4.26
3835 6273 8.737168 TGAAAAGTAACCATGAATATCCTCTG 57.263 34.615 0.00 0.00 0.00 3.35
3836 6274 9.347240 CATGAAAAGTAACCATGAATATCCTCT 57.653 33.333 0.00 0.00 39.86 3.69
3837 6275 9.125026 ACATGAAAAGTAACCATGAATATCCTC 57.875 33.333 0.00 0.00 39.86 3.71
3838 6276 8.906867 CACATGAAAAGTAACCATGAATATCCT 58.093 33.333 0.00 0.00 39.86 3.24
3839 6277 8.137437 CCACATGAAAAGTAACCATGAATATCC 58.863 37.037 0.00 0.00 39.86 2.59
3840 6278 8.686334 ACCACATGAAAAGTAACCATGAATATC 58.314 33.333 0.00 0.00 39.86 1.63
3841 6279 8.469200 CACCACATGAAAAGTAACCATGAATAT 58.531 33.333 0.00 0.00 39.86 1.28
3842 6280 7.093988 CCACCACATGAAAAGTAACCATGAATA 60.094 37.037 0.00 0.00 39.86 1.75
3843 6281 6.295236 CCACCACATGAAAAGTAACCATGAAT 60.295 38.462 0.00 0.00 39.86 2.57
3844 6282 5.010516 CCACCACATGAAAAGTAACCATGAA 59.989 40.000 0.00 0.00 39.86 2.57
3845 6283 4.522405 CCACCACATGAAAAGTAACCATGA 59.478 41.667 0.00 0.00 39.86 3.07
3846 6284 4.522405 TCCACCACATGAAAAGTAACCATG 59.478 41.667 0.00 0.00 42.32 3.66
3847 6285 4.735369 TCCACCACATGAAAAGTAACCAT 58.265 39.130 0.00 0.00 0.00 3.55
3848 6286 4.141287 CTCCACCACATGAAAAGTAACCA 58.859 43.478 0.00 0.00 0.00 3.67
3849 6287 3.057526 GCTCCACCACATGAAAAGTAACC 60.058 47.826 0.00 0.00 0.00 2.85
3850 6288 3.568007 TGCTCCACCACATGAAAAGTAAC 59.432 43.478 0.00 0.00 0.00 2.50
3851 6289 3.820467 CTGCTCCACCACATGAAAAGTAA 59.180 43.478 0.00 0.00 0.00 2.24
3852 6290 3.411446 CTGCTCCACCACATGAAAAGTA 58.589 45.455 0.00 0.00 0.00 2.24
3853 6291 2.233271 CTGCTCCACCACATGAAAAGT 58.767 47.619 0.00 0.00 0.00 2.66
3854 6292 1.068055 GCTGCTCCACCACATGAAAAG 60.068 52.381 0.00 0.00 0.00 2.27
3855 6293 0.961019 GCTGCTCCACCACATGAAAA 59.039 50.000 0.00 0.00 0.00 2.29
3856 6294 0.178995 TGCTGCTCCACCACATGAAA 60.179 50.000 0.00 0.00 0.00 2.69
3857 6295 0.178995 TTGCTGCTCCACCACATGAA 60.179 50.000 0.00 0.00 0.00 2.57
3858 6296 0.890542 GTTGCTGCTCCACCACATGA 60.891 55.000 0.00 0.00 0.00 3.07
3859 6297 1.582968 GTTGCTGCTCCACCACATG 59.417 57.895 0.00 0.00 0.00 3.21
3860 6298 1.604593 GGTTGCTGCTCCACCACAT 60.605 57.895 0.00 0.00 0.00 3.21
3861 6299 2.203337 GGTTGCTGCTCCACCACA 60.203 61.111 0.00 0.00 0.00 4.17
3862 6300 1.968540 GAGGTTGCTGCTCCACCAC 60.969 63.158 15.50 7.98 0.00 4.16
3863 6301 2.431683 GAGGTTGCTGCTCCACCA 59.568 61.111 15.50 0.00 0.00 4.17
3864 6302 2.743928 CGAGGTTGCTGCTCCACC 60.744 66.667 14.47 11.26 0.00 4.61
3865 6303 3.426568 GCGAGGTTGCTGCTCCAC 61.427 66.667 14.47 8.76 0.00 4.02
3866 6304 3.889134 CTGCGAGGTTGCTGCTCCA 62.889 63.158 14.47 0.00 35.36 3.86
3867 6305 3.123620 CTGCGAGGTTGCTGCTCC 61.124 66.667 0.00 3.74 35.36 4.70
3871 6309 2.357881 TGAGCTGCGAGGTTGCTG 60.358 61.111 0.00 0.00 37.16 4.41
3872 6310 2.047465 CTGAGCTGCGAGGTTGCT 60.047 61.111 0.00 0.00 40.02 3.91
3873 6311 2.358003 ACTGAGCTGCGAGGTTGC 60.358 61.111 0.00 0.00 0.00 4.17
3874 6312 1.739562 GGACTGAGCTGCGAGGTTG 60.740 63.158 0.00 0.00 0.00 3.77
3875 6313 1.548357 ATGGACTGAGCTGCGAGGTT 61.548 55.000 0.00 0.00 0.00 3.50
3876 6314 1.986757 ATGGACTGAGCTGCGAGGT 60.987 57.895 0.00 1.21 0.00 3.85
3877 6315 1.521010 CATGGACTGAGCTGCGAGG 60.521 63.158 0.00 0.00 0.00 4.63
3878 6316 2.172372 GCATGGACTGAGCTGCGAG 61.172 63.158 0.00 0.00 0.00 5.03
3879 6317 2.125391 GCATGGACTGAGCTGCGA 60.125 61.111 0.00 0.00 0.00 5.10
3880 6318 3.200593 GGCATGGACTGAGCTGCG 61.201 66.667 0.00 0.00 35.47 5.18
3881 6319 2.113433 CAGGCATGGACTGAGCTGC 61.113 63.158 0.00 0.00 42.14 5.25
3882 6320 2.113433 GCAGGCATGGACTGAGCTG 61.113 63.158 2.64 0.00 42.14 4.24
3883 6321 2.271497 GCAGGCATGGACTGAGCT 59.729 61.111 2.64 0.00 42.14 4.09
3884 6322 2.113433 CAGCAGGCATGGACTGAGC 61.113 63.158 2.64 0.00 42.14 4.26
3885 6323 0.743701 GTCAGCAGGCATGGACTGAG 60.744 60.000 8.64 0.00 42.14 3.35
3886 6324 1.297689 GTCAGCAGGCATGGACTGA 59.702 57.895 2.64 2.25 42.14 3.41
3887 6325 0.607217 TTGTCAGCAGGCATGGACTG 60.607 55.000 0.00 0.00 42.51 3.51
3888 6326 0.322277 CTTGTCAGCAGGCATGGACT 60.322 55.000 0.00 0.00 0.00 3.85
3889 6327 0.607489 ACTTGTCAGCAGGCATGGAC 60.607 55.000 0.00 0.19 0.00 4.02
3890 6328 0.321919 GACTTGTCAGCAGGCATGGA 60.322 55.000 0.00 0.00 0.00 3.41
3891 6329 0.322277 AGACTTGTCAGCAGGCATGG 60.322 55.000 0.00 0.00 0.00 3.66
3892 6330 1.531423 AAGACTTGTCAGCAGGCATG 58.469 50.000 0.00 0.00 0.00 4.06
3893 6331 1.884579 CAAAGACTTGTCAGCAGGCAT 59.115 47.619 3.49 0.00 0.00 4.40
3894 6332 1.311859 CAAAGACTTGTCAGCAGGCA 58.688 50.000 3.49 0.00 0.00 4.75
3895 6333 0.039708 GCAAAGACTTGTCAGCAGGC 60.040 55.000 3.49 0.00 34.79 4.85
3896 6334 0.595095 GGCAAAGACTTGTCAGCAGG 59.405 55.000 3.49 0.00 37.11 4.85
3897 6335 1.311859 TGGCAAAGACTTGTCAGCAG 58.688 50.000 3.49 0.00 42.21 4.24
3898 6336 3.493028 TGGCAAAGACTTGTCAGCA 57.507 47.368 3.49 0.00 42.21 4.41
3901 6339 1.581934 CGACTGGCAAAGACTTGTCA 58.418 50.000 3.49 0.00 44.84 3.58
3902 6340 0.868406 CCGACTGGCAAAGACTTGTC 59.132 55.000 0.00 0.00 37.69 3.18
3903 6341 3.006672 CCGACTGGCAAAGACTTGT 57.993 52.632 0.00 0.00 34.79 3.16
3914 6352 2.169769 TGGGTAGAAAATAGCCGACTGG 59.830 50.000 0.00 0.00 37.88 4.00
3915 6353 3.195661 GTGGGTAGAAAATAGCCGACTG 58.804 50.000 0.00 0.00 37.88 3.51
3916 6354 2.835764 TGTGGGTAGAAAATAGCCGACT 59.164 45.455 0.00 0.00 37.88 4.18
3917 6355 3.255969 TGTGGGTAGAAAATAGCCGAC 57.744 47.619 0.00 0.00 37.88 4.79
3918 6356 3.602483 GTTGTGGGTAGAAAATAGCCGA 58.398 45.455 0.00 0.00 37.88 5.54
3919 6357 2.350498 CGTTGTGGGTAGAAAATAGCCG 59.650 50.000 0.00 0.00 37.88 5.52
3920 6358 3.602483 TCGTTGTGGGTAGAAAATAGCC 58.398 45.455 0.00 0.00 35.75 3.93
3921 6359 5.353123 TGATTCGTTGTGGGTAGAAAATAGC 59.647 40.000 0.00 0.00 0.00 2.97
3922 6360 6.370442 TGTGATTCGTTGTGGGTAGAAAATAG 59.630 38.462 0.00 0.00 0.00 1.73
3923 6361 6.231951 TGTGATTCGTTGTGGGTAGAAAATA 58.768 36.000 0.00 0.00 0.00 1.40
3924 6362 5.067273 TGTGATTCGTTGTGGGTAGAAAAT 58.933 37.500 0.00 0.00 0.00 1.82
3925 6363 4.452825 TGTGATTCGTTGTGGGTAGAAAA 58.547 39.130 0.00 0.00 0.00 2.29
3926 6364 4.074627 TGTGATTCGTTGTGGGTAGAAA 57.925 40.909 0.00 0.00 0.00 2.52
3927 6365 3.755112 TGTGATTCGTTGTGGGTAGAA 57.245 42.857 0.00 0.00 0.00 2.10
3928 6366 3.674955 CGATGTGATTCGTTGTGGGTAGA 60.675 47.826 0.00 0.00 34.46 2.59
3929 6367 2.603110 CGATGTGATTCGTTGTGGGTAG 59.397 50.000 0.00 0.00 34.46 3.18
3930 6368 2.612604 CGATGTGATTCGTTGTGGGTA 58.387 47.619 0.00 0.00 34.46 3.69
3931 6369 1.438651 CGATGTGATTCGTTGTGGGT 58.561 50.000 0.00 0.00 34.46 4.51
3932 6370 0.096976 GCGATGTGATTCGTTGTGGG 59.903 55.000 0.00 0.00 41.16 4.61
3933 6371 0.795698 TGCGATGTGATTCGTTGTGG 59.204 50.000 0.00 0.00 41.16 4.17
3934 6372 2.592796 TTGCGATGTGATTCGTTGTG 57.407 45.000 0.00 0.00 41.16 3.33
3935 6373 5.484173 AATATTGCGATGTGATTCGTTGT 57.516 34.783 0.00 0.00 41.16 3.32
3936 6374 5.171874 CCAAATATTGCGATGTGATTCGTTG 59.828 40.000 0.00 0.00 41.16 4.10
3937 6375 5.273170 CCAAATATTGCGATGTGATTCGTT 58.727 37.500 0.00 0.00 41.16 3.85
3938 6376 4.789481 GCCAAATATTGCGATGTGATTCGT 60.789 41.667 0.00 0.00 41.16 3.85
3939 6377 3.665409 GCCAAATATTGCGATGTGATTCG 59.335 43.478 0.00 0.00 41.99 3.34
3940 6378 4.863491 AGCCAAATATTGCGATGTGATTC 58.137 39.130 0.00 0.00 0.00 2.52
3941 6379 4.924305 AGCCAAATATTGCGATGTGATT 57.076 36.364 0.00 0.00 0.00 2.57
3942 6380 4.098349 ACAAGCCAAATATTGCGATGTGAT 59.902 37.500 0.00 0.00 33.31 3.06
3943 6381 3.443329 ACAAGCCAAATATTGCGATGTGA 59.557 39.130 0.00 0.00 33.31 3.58
3944 6382 3.548668 CACAAGCCAAATATTGCGATGTG 59.451 43.478 17.19 17.19 40.80 3.21
3945 6383 3.429272 CCACAAGCCAAATATTGCGATGT 60.429 43.478 0.00 0.00 34.32 3.06
3946 6384 3.117794 CCACAAGCCAAATATTGCGATG 58.882 45.455 0.00 0.00 0.00 3.84
3947 6385 2.481795 GCCACAAGCCAAATATTGCGAT 60.482 45.455 0.00 0.00 34.35 4.58
3948 6386 1.135141 GCCACAAGCCAAATATTGCGA 60.135 47.619 0.00 0.00 34.35 5.10
3949 6387 1.135024 AGCCACAAGCCAAATATTGCG 60.135 47.619 0.00 0.00 45.47 4.85
3950 6388 2.094078 TGAGCCACAAGCCAAATATTGC 60.094 45.455 0.00 0.00 45.47 3.56
3951 6389 3.872511 TGAGCCACAAGCCAAATATTG 57.127 42.857 0.00 0.00 45.47 1.90
3952 6390 3.431207 GCATGAGCCACAAGCCAAATATT 60.431 43.478 0.00 0.00 45.47 1.28
3953 6391 2.101917 GCATGAGCCACAAGCCAAATAT 59.898 45.455 0.00 0.00 45.47 1.28
3954 6392 1.477700 GCATGAGCCACAAGCCAAATA 59.522 47.619 0.00 0.00 45.47 1.40
3955 6393 0.248289 GCATGAGCCACAAGCCAAAT 59.752 50.000 0.00 0.00 45.47 2.32
3956 6394 0.828762 AGCATGAGCCACAAGCCAAA 60.829 50.000 0.00 0.00 43.15 3.28
3957 6395 1.228644 AGCATGAGCCACAAGCCAA 60.229 52.632 0.00 0.00 43.15 4.52
3958 6396 1.974875 CAGCATGAGCCACAAGCCA 60.975 57.895 0.00 0.00 43.15 4.75
3959 6397 2.882876 CAGCATGAGCCACAAGCC 59.117 61.111 0.00 0.00 43.15 4.35
3960 6398 2.181021 GCAGCATGAGCCACAAGC 59.819 61.111 0.00 1.38 43.56 4.01
3961 6399 1.211969 GTGCAGCATGAGCCACAAG 59.788 57.895 0.00 0.00 43.56 3.16
3962 6400 2.619165 CGTGCAGCATGAGCCACAA 61.619 57.895 9.20 0.00 43.56 3.33
3963 6401 3.051479 CGTGCAGCATGAGCCACA 61.051 61.111 9.20 0.00 43.56 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.