Multiple sequence alignment - TraesCS3D01G527000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G527000 chr3D 100.000 3138 0 0 1 3138 605673658 605676795 0.000000e+00 5795.0
1 TraesCS3D01G527000 chr3D 73.739 872 198 22 944 1797 605704692 605705550 2.350000e-81 313.0
2 TraesCS3D01G527000 chr3D 82.129 263 32 12 1 251 606777556 606777297 8.820000e-51 211.0
3 TraesCS3D01G527000 chr3D 85.821 134 17 1 253 384 605704547 605704680 1.170000e-29 141.0
4 TraesCS3D01G527000 chr3D 90.141 71 4 2 795 865 606776690 606776623 4.310000e-14 89.8
5 TraesCS3D01G527000 chr3A 94.502 3092 137 17 58 3138 738711546 738708477 0.000000e+00 4737.0
6 TraesCS3D01G527000 chr3A 85.681 426 55 3 2716 3138 738758841 738758419 7.990000e-121 444.0
7 TraesCS3D01G527000 chr3A 85.817 416 50 5 2728 3138 738864966 738864555 1.730000e-117 433.0
8 TraesCS3D01G527000 chr3A 81.767 532 81 16 2618 3138 738223783 738223257 6.220000e-117 431.0
9 TraesCS3D01G527000 chr3A 85.507 414 54 3 2728 3138 738919650 738919240 8.040000e-116 427.0
10 TraesCS3D01G527000 chr3A 83.921 454 56 13 2694 3136 738305546 738305099 4.840000e-113 418.0
11 TraesCS3D01G527000 chr3A 89.362 329 27 5 347 671 658676363 658676687 1.050000e-109 407.0
12 TraesCS3D01G527000 chr3A 89.058 329 28 5 347 671 122289209 122289533 4.870000e-108 401.0
13 TraesCS3D01G527000 chr3A 76.147 654 105 34 1912 2553 738224527 738223913 2.370000e-76 296.0
14 TraesCS3D01G527000 chr3A 83.794 253 34 6 1 247 738456763 738456512 1.880000e-57 233.0
15 TraesCS3D01G527000 chr3A 83.794 253 34 6 1 247 738544393 738544142 1.880000e-57 233.0
16 TraesCS3D01G527000 chr3A 83.794 253 34 6 1 247 738566057 738565806 1.880000e-57 233.0
17 TraesCS3D01G527000 chr3A 83.794 253 34 6 1 247 738644564 738644313 1.880000e-57 233.0
18 TraesCS3D01G527000 chr3A 80.297 269 39 9 4 260 738240804 738240538 1.150000e-44 191.0
19 TraesCS3D01G527000 chr3A 82.822 163 21 6 935 1095 738921119 738920962 4.220000e-29 139.0
20 TraesCS3D01G527000 chr3A 84.138 145 18 5 951 1095 738325967 738325828 5.460000e-28 135.0
21 TraesCS3D01G527000 chr3A 97.222 72 1 1 1 72 738711979 738711909 1.530000e-23 121.0
22 TraesCS3D01G527000 chr3A 87.879 99 12 0 682 780 122289606 122289704 1.980000e-22 117.0
23 TraesCS3D01G527000 chr3B 94.481 2428 117 12 718 3138 816156540 816154123 0.000000e+00 3725.0
24 TraesCS3D01G527000 chr7A 90.274 329 24 5 347 671 339498650 339498974 1.040000e-114 424.0
25 TraesCS3D01G527000 chr7A 87.879 99 12 0 682 780 339499047 339499145 1.980000e-22 117.0
26 TraesCS3D01G527000 chr1A 90.274 329 24 5 347 671 54884350 54884674 1.040000e-114 424.0
27 TraesCS3D01G527000 chr1A 89.362 329 27 5 347 671 195648239 195648563 1.050000e-109 407.0
28 TraesCS3D01G527000 chr1A 83.838 99 16 0 682 780 54884747 54884845 9.270000e-16 95.3
29 TraesCS3D01G527000 chr6A 89.970 329 25 5 347 671 467500288 467500612 4.840000e-113 418.0
30 TraesCS3D01G527000 chr6A 89.634 328 26 5 347 670 50730701 50730378 8.100000e-111 411.0
31 TraesCS3D01G527000 chr6A 87.879 99 12 0 682 780 50730304 50730206 1.980000e-22 117.0
32 TraesCS3D01G527000 chr5A 84.419 430 59 7 2716 3138 624723748 624723320 1.740000e-112 416.0
33 TraesCS3D01G527000 chr5D 84.259 432 61 5 2713 3138 500138212 500137782 6.260000e-112 414.0
34 TraesCS3D01G527000 chr5D 88.955 335 36 1 1105 1438 534545079 534544745 2.250000e-111 412.0
35 TraesCS3D01G527000 chr5D 88.358 335 38 1 1105 1438 534226020 534225686 4.870000e-108 401.0
36 TraesCS3D01G527000 chr5D 88.571 175 17 2 933 1104 534547196 534547022 3.170000e-50 209.0
37 TraesCS3D01G527000 chr2A 89.058 329 28 5 347 671 210824435 210824759 4.870000e-108 401.0
38 TraesCS3D01G527000 chr2A 86.869 99 13 0 682 780 737519158 737519256 9.200000e-21 111.0
39 TraesCS3D01G527000 chrUn 83.794 253 34 6 1 247 456271711 456271962 1.880000e-57 233.0
40 TraesCS3D01G527000 chrUn 86.228 167 19 4 1 164 362224671 362224506 8.940000e-41 178.0
41 TraesCS3D01G527000 chrUn 86.228 167 19 4 1 164 429524965 429524800 8.940000e-41 178.0
42 TraesCS3D01G527000 chrUn 82.524 103 17 1 682 783 42329390 42329288 4.310000e-14 89.8
43 TraesCS3D01G527000 chr4A 89.815 108 9 1 933 1038 637334280 637334387 1.520000e-28 137.0
44 TraesCS3D01G527000 chr4A 89.815 108 9 1 933 1038 637521494 637521601 1.520000e-28 137.0
45 TraesCS3D01G527000 chr4A 88.889 108 10 1 933 1038 637468510 637468617 7.060000e-27 132.0
46 TraesCS3D01G527000 chr4A 83.077 130 14 2 682 811 636291919 636291798 9.200000e-21 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G527000 chr3D 605673658 605676795 3137 False 5795.0 5795 100.0000 1 3138 1 chr3D.!!$F1 3137
1 TraesCS3D01G527000 chr3D 605704547 605705550 1003 False 227.0 313 79.7800 253 1797 2 chr3D.!!$F2 1544
2 TraesCS3D01G527000 chr3A 738708477 738711979 3502 True 2429.0 4737 95.8620 1 3138 2 chr3A.!!$R11 3137
3 TraesCS3D01G527000 chr3A 738223257 738224527 1270 True 363.5 431 78.9570 1912 3138 2 chr3A.!!$R10 1226
4 TraesCS3D01G527000 chr3A 738919240 738921119 1879 True 283.0 427 84.1645 935 3138 2 chr3A.!!$R12 2203
5 TraesCS3D01G527000 chr3B 816154123 816156540 2417 True 3725.0 3725 94.4810 718 3138 1 chr3B.!!$R1 2420
6 TraesCS3D01G527000 chr5D 534544745 534547196 2451 True 310.5 412 88.7630 933 1438 2 chr5D.!!$R3 505

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
561 945 0.250901 GGTGTCCAATGCTGGTGAGT 60.251 55.0 0.0 0.0 43.97 3.41 F
1252 3592 0.679505 CAACGAGACTCCCAACCTCA 59.320 55.0 0.0 0.0 0.00 3.86 F
1583 3935 0.163146 GCGTCGGTTGCTGTAGTTTC 59.837 55.0 0.0 0.0 0.00 2.78 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1583 3935 0.686789 TGCTATGGTCATCGATGGGG 59.313 55.000 24.61 9.88 0.00 4.96 R
2094 4456 3.122278 CACTAATGTTACCACACGAACGG 59.878 47.826 0.00 0.00 35.03 4.44 R
2701 5222 5.674525 TGATAAGATGCATCCGAAAACTCT 58.325 37.500 23.06 0.00 0.00 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 460 4.213694 GGCATTCAATGTCTATCTCTGCAG 59.786 45.833 7.63 7.63 30.66 4.41
129 506 3.925913 GCAATGCGGTTTATTGTGAACAT 59.074 39.130 0.00 0.00 37.73 2.71
170 547 1.286553 ACTTGTCAACACCCCCTTTGA 59.713 47.619 0.00 0.00 0.00 2.69
171 548 2.091333 ACTTGTCAACACCCCCTTTGAT 60.091 45.455 0.00 0.00 34.34 2.57
172 549 2.765689 TGTCAACACCCCCTTTGATT 57.234 45.000 0.00 0.00 34.34 2.57
173 550 2.315176 TGTCAACACCCCCTTTGATTG 58.685 47.619 0.00 0.00 34.34 2.67
223 607 0.612174 ACTGACTTGAGAGGCGGCTA 60.612 55.000 13.24 0.00 41.37 3.93
243 627 2.684843 GCGGCAGCAAGACCAGAAG 61.685 63.158 3.18 0.00 44.35 2.85
246 630 1.609208 GGCAGCAAGACCAGAAGAAA 58.391 50.000 0.00 0.00 0.00 2.52
251 635 3.434984 CAGCAAGACCAGAAGAAAGTAGC 59.565 47.826 0.00 0.00 0.00 3.58
299 683 4.617762 CGGTGTCTTCTTACTTGGGTCTAC 60.618 50.000 0.00 0.00 0.00 2.59
394 778 4.680110 CCGTTCAACACTGACTACTGTTAG 59.320 45.833 0.00 0.00 36.09 2.34
447 831 5.129815 AGGTCCACTAACTTGTAACAAGTGA 59.870 40.000 0.00 0.00 39.93 3.41
453 837 7.855904 CCACTAACTTGTAACAAGTGACAAATC 59.144 37.037 0.00 0.00 39.93 2.17
516 900 7.063780 ACTGCAACATTGAATTAGCTAAAATGC 59.936 33.333 21.37 16.60 32.65 3.56
519 903 9.086336 GCAACATTGAATTAGCTAAAATGCTTA 57.914 29.630 21.37 3.46 43.74 3.09
556 940 3.803082 CGCGGTGTCCAATGCTGG 61.803 66.667 0.00 0.00 45.08 4.85
561 945 0.250901 GGTGTCCAATGCTGGTGAGT 60.251 55.000 0.00 0.00 43.97 3.41
562 946 1.609208 GTGTCCAATGCTGGTGAGTT 58.391 50.000 0.00 0.00 43.97 3.01
563 947 2.552155 GGTGTCCAATGCTGGTGAGTTA 60.552 50.000 0.00 0.00 43.97 2.24
578 962 8.515414 GCTGGTGAGTTATTTCTGATTTAGTTT 58.485 33.333 0.00 0.00 0.00 2.66
691 1076 0.904649 TGTGGTGACATGGGCTAGAG 59.095 55.000 0.00 0.00 46.14 2.43
731 1116 7.445121 AGATGATGACTGACTTACAAGTTCAA 58.555 34.615 0.00 0.00 39.88 2.69
780 1165 5.187576 AGCAGTGTAATTTAATGTGGCCATT 59.812 36.000 9.72 1.83 43.62 3.16
789 1174 1.455248 ATGTGGCCATTGCAAATTGC 58.545 45.000 9.72 11.58 45.29 3.56
812 1197 4.495349 CCAATCTCACTTTCACATCGCATC 60.495 45.833 0.00 0.00 0.00 3.91
813 1198 3.317603 TCTCACTTTCACATCGCATCA 57.682 42.857 0.00 0.00 0.00 3.07
814 1199 3.663025 TCTCACTTTCACATCGCATCAA 58.337 40.909 0.00 0.00 0.00 2.57
872 1260 4.223659 GCAACTGTACAACCATTTTACGG 58.776 43.478 0.00 0.00 0.00 4.02
891 1279 4.074970 ACGGAGAATCAAAGCTTTCATGT 58.925 39.130 9.23 0.00 36.25 3.21
897 1285 6.675987 AGAATCAAAGCTTTCATGTCTTGAC 58.324 36.000 9.23 0.00 32.84 3.18
898 1286 4.836125 TCAAAGCTTTCATGTCTTGACC 57.164 40.909 9.23 0.00 32.84 4.02
900 1288 4.828939 TCAAAGCTTTCATGTCTTGACCAT 59.171 37.500 9.23 0.00 32.84 3.55
902 1290 6.660521 TCAAAGCTTTCATGTCTTGACCATAT 59.339 34.615 9.23 0.00 32.84 1.78
904 1292 7.559590 AAGCTTTCATGTCTTGACCATATAC 57.440 36.000 0.00 0.00 32.84 1.47
905 1293 6.893583 AGCTTTCATGTCTTGACCATATACT 58.106 36.000 0.00 0.00 32.84 2.12
906 1294 6.989169 AGCTTTCATGTCTTGACCATATACTC 59.011 38.462 0.00 0.00 32.84 2.59
907 1295 6.989169 GCTTTCATGTCTTGACCATATACTCT 59.011 38.462 0.00 0.00 32.84 3.24
909 1297 6.656632 TCATGTCTTGACCATATACTCTCC 57.343 41.667 0.00 0.00 0.00 3.71
910 1298 5.540337 TCATGTCTTGACCATATACTCTCCC 59.460 44.000 0.00 0.00 0.00 4.30
911 1299 4.223953 TGTCTTGACCATATACTCTCCCC 58.776 47.826 0.00 0.00 0.00 4.81
914 1304 6.017192 GTCTTGACCATATACTCTCCCCATA 58.983 44.000 0.00 0.00 0.00 2.74
960 1353 2.158475 ACTTGCCTGACCTGAATTTCCA 60.158 45.455 0.00 0.00 0.00 3.53
1173 3512 2.490903 GACATGTGGCAATCTGAGCTTT 59.509 45.455 1.15 0.00 0.00 3.51
1196 3535 2.044353 ACTATCCCTTTGGCATTGGGTT 59.956 45.455 20.23 15.91 41.58 4.11
1250 3590 1.371558 GCAACGAGACTCCCAACCT 59.628 57.895 0.00 0.00 0.00 3.50
1252 3592 0.679505 CAACGAGACTCCCAACCTCA 59.320 55.000 0.00 0.00 0.00 3.86
1308 3660 1.920574 CCGGCGATATCGATGTGAATC 59.079 52.381 28.63 7.86 43.02 2.52
1374 3726 2.778299 TCCCTTTGAAATCTGGTGTCG 58.222 47.619 0.00 0.00 0.00 4.35
1385 3737 4.801330 ATCTGGTGTCGAAGTGTATGAA 57.199 40.909 0.00 0.00 0.00 2.57
1583 3935 0.163146 GCGTCGGTTGCTGTAGTTTC 59.837 55.000 0.00 0.00 0.00 2.78
1659 4011 3.697166 AGGAAAATTAACACCGGAGCAT 58.303 40.909 9.46 0.00 0.00 3.79
1888 4240 2.737359 GCATGACATCAAGCAATGGGTG 60.737 50.000 0.00 0.00 40.01 4.61
2012 4373 8.573035 ACCAAATGTACAACTGTTAGGTATTTG 58.427 33.333 0.00 16.83 0.00 2.32
2013 4374 8.788806 CCAAATGTACAACTGTTAGGTATTTGA 58.211 33.333 21.19 2.08 0.00 2.69
2017 4378 7.913789 TGTACAACTGTTAGGTATTTGAGGAT 58.086 34.615 0.00 0.00 0.00 3.24
2094 4456 0.543749 AGCAGAGCTGATTGTACCCC 59.456 55.000 0.85 0.00 37.57 4.95
2095 4457 0.464554 GCAGAGCTGATTGTACCCCC 60.465 60.000 0.85 0.00 0.00 5.40
2154 4516 3.416156 CTTAGAAGAGGGTTGCTTTGCT 58.584 45.455 0.00 0.00 0.00 3.91
2391 4759 1.285962 AGTTGCATAGAGGCCCAACAT 59.714 47.619 18.62 5.26 39.86 2.71
2456 4842 4.743151 CGTAGAAGTAAACACTGCAGACAA 59.257 41.667 23.35 0.00 0.00 3.18
2770 5303 3.965379 TGAATGCATTCAGCCAAACAT 57.035 38.095 33.08 0.00 41.51 2.71
2787 5320 5.279406 CCAAACATTTGTAAAGGGATCTGCA 60.279 40.000 3.79 0.00 36.45 4.41
3128 5664 7.706281 ACGTTGATATCATCTGATGAAACTC 57.294 36.000 22.91 18.26 43.50 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 460 1.487452 TATCGGCTTGTGATTCGCGC 61.487 55.000 0.00 0.00 0.00 6.86
170 547 2.025981 TCTTGTGCACTAGCCCATCAAT 60.026 45.455 21.53 0.00 41.13 2.57
171 548 1.350684 TCTTGTGCACTAGCCCATCAA 59.649 47.619 21.53 1.78 41.13 2.57
172 549 0.983467 TCTTGTGCACTAGCCCATCA 59.017 50.000 21.53 2.48 41.13 3.07
173 550 2.012673 CTTCTTGTGCACTAGCCCATC 58.987 52.381 21.53 0.00 41.13 3.51
243 627 4.451435 AGAAAAGTAAGCACCGCTACTTTC 59.549 41.667 16.57 11.03 39.26 2.62
246 630 3.679824 AGAAAAGTAAGCACCGCTACT 57.320 42.857 0.00 0.00 38.25 2.57
251 635 4.813296 AGAACAAGAAAAGTAAGCACCG 57.187 40.909 0.00 0.00 0.00 4.94
394 778 2.759191 TGCGACAATGCTATGAGGATC 58.241 47.619 0.00 0.00 35.36 3.36
447 831 5.048364 TGCAAATTTACGGCACTAGATTTGT 60.048 36.000 0.00 0.00 37.03 2.83
453 837 7.830575 CATAATTTGCAAATTTACGGCACTAG 58.169 34.615 35.18 13.82 39.24 2.57
516 900 6.143278 GCGTTTTGGACATTACTTTGGTTAAG 59.857 38.462 0.00 0.00 39.87 1.85
519 903 4.364860 GCGTTTTGGACATTACTTTGGTT 58.635 39.130 0.00 0.00 0.00 3.67
520 904 3.549221 CGCGTTTTGGACATTACTTTGGT 60.549 43.478 0.00 0.00 0.00 3.67
561 945 9.995003 ATGCCAAACAAACTAAATCAGAAATAA 57.005 25.926 0.00 0.00 0.00 1.40
562 946 9.638239 GATGCCAAACAAACTAAATCAGAAATA 57.362 29.630 0.00 0.00 0.00 1.40
563 947 8.370182 AGATGCCAAACAAACTAAATCAGAAAT 58.630 29.630 0.00 0.00 0.00 2.17
614 998 5.750067 ACTTGTGCAAATTGATGAGAACAAC 59.250 36.000 0.00 0.00 0.00 3.32
710 1095 6.564873 GCAGTTGAACTTGTAAGTCAGTCATC 60.565 42.308 0.00 0.00 38.57 2.92
731 1116 0.325933 TCTTGTGGCTATGCTGCAGT 59.674 50.000 16.64 0.00 34.04 4.40
789 1174 2.743664 TGCGATGTGAAAGTGAGATTGG 59.256 45.455 0.00 0.00 0.00 3.16
812 1197 1.326213 TGGCTGTGGTGGGTTTGTTG 61.326 55.000 0.00 0.00 0.00 3.33
813 1198 1.000993 TGGCTGTGGTGGGTTTGTT 59.999 52.632 0.00 0.00 0.00 2.83
814 1199 1.756561 GTGGCTGTGGTGGGTTTGT 60.757 57.895 0.00 0.00 0.00 2.83
867 1254 5.705441 ACATGAAAGCTTTGATTCTCCGTAA 59.295 36.000 18.30 0.00 0.00 3.18
872 1260 6.800892 GTCAAGACATGAAAGCTTTGATTCTC 59.199 38.462 18.30 10.31 40.50 2.87
891 1279 4.552883 TGGGGAGAGTATATGGTCAAGA 57.447 45.455 0.00 0.00 0.00 3.02
897 1285 5.602978 GGGTGTATATGGGGAGAGTATATGG 59.397 48.000 0.00 0.00 0.00 2.74
898 1286 5.602978 GGGGTGTATATGGGGAGAGTATATG 59.397 48.000 0.00 0.00 0.00 1.78
900 1288 4.613396 TGGGGTGTATATGGGGAGAGTATA 59.387 45.833 0.00 0.00 0.00 1.47
902 1290 2.798972 TGGGGTGTATATGGGGAGAGTA 59.201 50.000 0.00 0.00 0.00 2.59
904 1292 2.415983 TGGGGTGTATATGGGGAGAG 57.584 55.000 0.00 0.00 0.00 3.20
905 1293 4.728090 ATATGGGGTGTATATGGGGAGA 57.272 45.455 0.00 0.00 0.00 3.71
906 1294 5.538877 AGTATATGGGGTGTATATGGGGAG 58.461 45.833 0.00 0.00 0.00 4.30
907 1295 5.260214 AGAGTATATGGGGTGTATATGGGGA 59.740 44.000 0.00 0.00 0.00 4.81
909 1297 5.602978 GGAGAGTATATGGGGTGTATATGGG 59.397 48.000 0.00 0.00 0.00 4.00
910 1298 5.602978 GGGAGAGTATATGGGGTGTATATGG 59.397 48.000 0.00 0.00 0.00 2.74
911 1299 6.202331 TGGGAGAGTATATGGGGTGTATATG 58.798 44.000 0.00 0.00 0.00 1.78
914 1304 4.777877 TGGGAGAGTATATGGGGTGTAT 57.222 45.455 0.00 0.00 0.00 2.29
960 1353 0.952984 GCTGCTTCCAACTTCGCTCT 60.953 55.000 0.00 0.00 0.00 4.09
1173 3512 2.358090 CCCAATGCCAAAGGGATAGTCA 60.358 50.000 0.00 0.00 45.80 3.41
1308 3660 4.018484 TGAAATTTCCAGGGCCAAAATG 57.982 40.909 15.48 0.00 0.00 2.32
1374 3726 5.530519 TTCAGCGACAATTCATACACTTC 57.469 39.130 0.00 0.00 0.00 3.01
1457 3809 3.007506 TGTCGTTGACCCAATACACATCT 59.992 43.478 0.00 0.00 0.00 2.90
1583 3935 0.686789 TGCTATGGTCATCGATGGGG 59.313 55.000 24.61 9.88 0.00 4.96
1896 4248 3.146726 TATAGCCGGCACCGCAGAC 62.147 63.158 31.54 0.00 38.24 3.51
2012 4373 8.738645 AAGATGTATCCAAGTTACAAATCCTC 57.261 34.615 0.00 0.00 33.55 3.71
2034 4395 8.235230 ACCCTAGGATGATCAGTAAAGATAAGA 58.765 37.037 11.48 0.00 0.00 2.10
2094 4456 3.122278 CACTAATGTTACCACACGAACGG 59.878 47.826 0.00 0.00 35.03 4.44
2095 4457 3.737266 ACACTAATGTTACCACACGAACG 59.263 43.478 0.00 0.00 34.46 3.95
2154 4516 5.560724 CAGTTGAGGTGAAAATCTTCCCTA 58.439 41.667 0.00 0.00 34.31 3.53
2391 4759 8.193953 TCACACAAGCATATCCAGATCTATTA 57.806 34.615 0.00 0.00 0.00 0.98
2456 4842 6.625740 GCATTTGCAGTGATAACCAACATAGT 60.626 38.462 5.46 0.00 41.59 2.12
2580 4997 6.980051 AGTATTTTCGCTGTAAACCTTAGG 57.020 37.500 0.00 0.00 0.00 2.69
2701 5222 5.674525 TGATAAGATGCATCCGAAAACTCT 58.325 37.500 23.06 0.00 0.00 3.24
2702 5223 5.991328 TGATAAGATGCATCCGAAAACTC 57.009 39.130 23.06 10.67 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.