Multiple sequence alignment - TraesCS3D01G525900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G525900 chr3D 100.000 3064 0 0 1 3064 604893189 604890126 0.000000e+00 5659.0
1 TraesCS3D01G525900 chr3D 77.966 708 153 2 1341 2045 566080982 566081689 1.010000e-119 440.0
2 TraesCS3D01G525900 chr3D 94.231 52 3 0 3013 3064 44962053 44962002 2.530000e-11 80.5
3 TraesCS3D01G525900 chr3B 93.771 1509 79 6 572 2076 812683239 812681742 0.000000e+00 2252.0
4 TraesCS3D01G525900 chr3B 84.201 576 36 11 2081 2650 812681701 812681175 2.730000e-140 508.0
5 TraesCS3D01G525900 chr3B 77.147 687 155 2 1340 2025 812726761 812726076 6.160000e-107 398.0
6 TraesCS3D01G525900 chr3A 89.981 1577 114 22 572 2141 735845651 735847190 0.000000e+00 1997.0
7 TraesCS3D01G525900 chr3A 78.520 689 142 3 1340 2025 735981618 735980933 6.030000e-122 448.0
8 TraesCS3D01G525900 chr3A 87.500 200 22 3 2733 2930 735849289 735849487 8.550000e-56 228.0
9 TraesCS3D01G525900 chr3A 90.173 173 14 1 2552 2721 735849136 735849308 3.980000e-54 222.0
10 TraesCS3D01G525900 chr3A 81.507 292 35 11 127 408 742045905 742046187 3.980000e-54 222.0
11 TraesCS3D01G525900 chr4D 77.001 687 148 8 1340 2021 484951852 484951171 4.790000e-103 385.0
12 TraesCS3D01G525900 chr4D 76.783 715 148 14 1340 2045 485043042 485042337 4.790000e-103 385.0
13 TraesCS3D01G525900 chr4D 76.783 715 148 14 1340 2045 485064985 485064280 4.790000e-103 385.0
14 TraesCS3D01G525900 chr4B 76.374 673 143 12 1340 2004 618251514 618250850 6.290000e-92 348.0
15 TraesCS3D01G525900 chr4B 82.562 281 33 11 139 410 15186263 15186536 1.840000e-57 233.0
16 TraesCS3D01G525900 chr4B 82.206 281 34 9 139 410 15201427 15201700 8.550000e-56 228.0
17 TraesCS3D01G525900 chr4B 94.118 51 3 0 3014 3064 4568432 4568382 9.110000e-11 78.7
18 TraesCS3D01G525900 chr6D 80.743 296 42 11 125 411 351932913 351933202 1.850000e-52 217.0
19 TraesCS3D01G525900 chr6D 88.525 61 6 1 2997 3056 262520975 262521035 4.240000e-09 73.1
20 TraesCS3D01G525900 chr2D 80.612 294 40 15 141 425 546220173 546219888 8.610000e-51 211.0
21 TraesCS3D01G525900 chr7B 80.783 281 42 8 136 407 519904294 519904017 3.100000e-50 209.0
22 TraesCS3D01G525900 chr7D 79.412 306 49 11 129 425 213970087 213969787 1.440000e-48 204.0
23 TraesCS3D01G525900 chr7D 96.078 51 2 0 3014 3064 560684102 560684152 1.960000e-12 84.2
24 TraesCS3D01G525900 chr7D 94.118 51 3 0 3014 3064 560703065 560703115 9.110000e-11 78.7
25 TraesCS3D01G525900 chr2B 79.932 294 43 10 128 411 207191664 207191377 5.180000e-48 202.0
26 TraesCS3D01G525900 chr2B 94.118 51 3 0 3014 3064 484125110 484125160 9.110000e-11 78.7
27 TraesCS3D01G525900 chr2B 94.118 51 2 1 3007 3057 550829945 550829994 3.280000e-10 76.8
28 TraesCS3D01G525900 chr4A 78.594 313 46 11 138 438 592494191 592493888 1.450000e-43 187.0
29 TraesCS3D01G525900 chr5B 92.593 54 4 0 3011 3064 327707474 327707527 9.110000e-11 78.7
30 TraesCS3D01G525900 chr6B 90.909 55 5 0 3010 3064 120800718 120800664 1.180000e-09 75.0
31 TraesCS3D01G525900 chr1D 100.000 28 0 0 2988 3015 22970648 22970621 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G525900 chr3D 604890126 604893189 3063 True 5659.000000 5659 100.000 1 3064 1 chr3D.!!$R2 3063
1 TraesCS3D01G525900 chr3D 566080982 566081689 707 False 440.000000 440 77.966 1341 2045 1 chr3D.!!$F1 704
2 TraesCS3D01G525900 chr3B 812681175 812683239 2064 True 1380.000000 2252 88.986 572 2650 2 chr3B.!!$R2 2078
3 TraesCS3D01G525900 chr3B 812726076 812726761 685 True 398.000000 398 77.147 1340 2025 1 chr3B.!!$R1 685
4 TraesCS3D01G525900 chr3A 735845651 735849487 3836 False 815.666667 1997 89.218 572 2930 3 chr3A.!!$F2 2358
5 TraesCS3D01G525900 chr3A 735980933 735981618 685 True 448.000000 448 78.520 1340 2025 1 chr3A.!!$R1 685
6 TraesCS3D01G525900 chr4D 484951171 484951852 681 True 385.000000 385 77.001 1340 2021 1 chr4D.!!$R1 681
7 TraesCS3D01G525900 chr4D 485042337 485043042 705 True 385.000000 385 76.783 1340 2045 1 chr4D.!!$R2 705
8 TraesCS3D01G525900 chr4D 485064280 485064985 705 True 385.000000 385 76.783 1340 2045 1 chr4D.!!$R3 705
9 TraesCS3D01G525900 chr4B 618250850 618251514 664 True 348.000000 348 76.374 1340 2004 1 chr4B.!!$R2 664

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
366 367 0.107654 GAAGATTGGACGAGGGGGTG 60.108 60.0 0.0 0.0 0.0 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2205 2546 0.175989 GGTAGGAAGAGAGTTGCCCG 59.824 60.0 0.0 0.0 0.0 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.298602 CAGCAAAACTGGGCAAAACC 58.701 50.000 0.00 0.00 43.19 3.27
21 22 0.908198 AGCAAAACTGGGCAAAACCA 59.092 45.000 0.00 0.00 42.05 3.67
22 23 1.280421 AGCAAAACTGGGCAAAACCAA 59.720 42.857 0.00 0.00 40.68 3.67
23 24 2.087646 GCAAAACTGGGCAAAACCAAA 58.912 42.857 0.00 0.00 40.68 3.28
24 25 2.489722 GCAAAACTGGGCAAAACCAAAA 59.510 40.909 0.00 0.00 40.68 2.44
25 26 3.671971 GCAAAACTGGGCAAAACCAAAAC 60.672 43.478 0.00 0.00 40.68 2.43
26 27 2.411628 AACTGGGCAAAACCAAAACC 57.588 45.000 0.00 0.00 40.68 3.27
27 28 1.280457 ACTGGGCAAAACCAAAACCA 58.720 45.000 0.00 0.00 40.68 3.67
28 29 1.952193 CTGGGCAAAACCAAAACCAG 58.048 50.000 0.00 0.00 40.68 4.00
29 30 0.543749 TGGGCAAAACCAAAACCAGG 59.456 50.000 0.00 0.00 42.05 4.45
30 31 0.544223 GGGCAAAACCAAAACCAGGT 59.456 50.000 0.00 0.00 42.05 4.00
31 32 1.763545 GGGCAAAACCAAAACCAGGTA 59.236 47.619 0.00 0.00 42.05 3.08
32 33 2.370519 GGGCAAAACCAAAACCAGGTAT 59.629 45.455 0.00 0.00 42.05 2.73
33 34 3.181449 GGGCAAAACCAAAACCAGGTATT 60.181 43.478 0.00 0.00 42.05 1.89
34 35 4.062293 GGCAAAACCAAAACCAGGTATTC 58.938 43.478 0.00 0.00 38.76 1.75
35 36 4.443598 GGCAAAACCAAAACCAGGTATTCA 60.444 41.667 0.00 0.00 38.76 2.57
36 37 4.749598 GCAAAACCAAAACCAGGTATTCAG 59.250 41.667 0.00 0.00 38.76 3.02
37 38 4.600692 AAACCAAAACCAGGTATTCAGC 57.399 40.909 0.00 0.00 38.76 4.26
38 39 3.525800 ACCAAAACCAGGTATTCAGCT 57.474 42.857 0.00 0.00 37.67 4.24
39 40 3.421844 ACCAAAACCAGGTATTCAGCTC 58.578 45.455 0.00 0.00 37.67 4.09
40 41 3.181434 ACCAAAACCAGGTATTCAGCTCA 60.181 43.478 0.00 0.00 37.67 4.26
41 42 4.019174 CCAAAACCAGGTATTCAGCTCAT 58.981 43.478 0.00 0.00 0.00 2.90
42 43 5.192927 CCAAAACCAGGTATTCAGCTCATA 58.807 41.667 0.00 0.00 0.00 2.15
43 44 5.297776 CCAAAACCAGGTATTCAGCTCATAG 59.702 44.000 0.00 0.00 0.00 2.23
44 45 4.696479 AACCAGGTATTCAGCTCATAGG 57.304 45.455 0.00 0.00 0.00 2.57
45 46 2.370189 ACCAGGTATTCAGCTCATAGGC 59.630 50.000 0.00 0.00 0.00 3.93
46 47 2.289945 CCAGGTATTCAGCTCATAGGCC 60.290 54.545 0.00 0.00 0.00 5.19
47 48 2.369860 CAGGTATTCAGCTCATAGGCCA 59.630 50.000 5.01 0.00 0.00 5.36
48 49 3.008813 CAGGTATTCAGCTCATAGGCCAT 59.991 47.826 5.01 0.00 0.00 4.40
49 50 3.008813 AGGTATTCAGCTCATAGGCCATG 59.991 47.826 5.01 7.20 35.81 3.66
50 51 2.581216 ATTCAGCTCATAGGCCATGG 57.419 50.000 7.63 7.63 35.16 3.66
51 52 0.179009 TTCAGCTCATAGGCCATGGC 60.179 55.000 29.47 29.47 41.06 4.40
61 62 2.973082 GCCATGGCCCAAGTTGTC 59.027 61.111 27.24 0.00 34.56 3.18
62 63 1.607467 GCCATGGCCCAAGTTGTCT 60.607 57.895 27.24 0.00 34.56 3.41
63 64 0.323360 GCCATGGCCCAAGTTGTCTA 60.323 55.000 27.24 0.00 34.56 2.59
64 65 1.686115 GCCATGGCCCAAGTTGTCTAT 60.686 52.381 27.24 0.00 34.56 1.98
65 66 2.301346 CCATGGCCCAAGTTGTCTATC 58.699 52.381 0.00 0.00 0.00 2.08
66 67 2.357050 CCATGGCCCAAGTTGTCTATCA 60.357 50.000 0.00 0.00 0.00 2.15
67 68 2.787473 TGGCCCAAGTTGTCTATCAG 57.213 50.000 0.00 0.00 0.00 2.90
68 69 1.281867 TGGCCCAAGTTGTCTATCAGG 59.718 52.381 0.00 0.00 0.00 3.86
69 70 1.408822 GGCCCAAGTTGTCTATCAGGG 60.409 57.143 1.45 0.00 37.87 4.45
70 71 2.044123 CCCAAGTTGTCTATCAGGGC 57.956 55.000 1.45 0.00 0.00 5.19
71 72 1.408822 CCCAAGTTGTCTATCAGGGCC 60.409 57.143 0.00 0.00 0.00 5.80
72 73 1.281867 CCAAGTTGTCTATCAGGGCCA 59.718 52.381 6.18 0.00 0.00 5.36
73 74 2.636830 CAAGTTGTCTATCAGGGCCAG 58.363 52.381 6.18 0.00 0.00 4.85
74 75 1.207791 AGTTGTCTATCAGGGCCAGG 58.792 55.000 6.18 0.00 0.00 4.45
75 76 0.181350 GTTGTCTATCAGGGCCAGGG 59.819 60.000 6.18 0.00 0.00 4.45
76 77 0.253160 TTGTCTATCAGGGCCAGGGT 60.253 55.000 6.18 0.00 0.00 4.34
77 78 0.639943 TGTCTATCAGGGCCAGGGTA 59.360 55.000 6.18 0.00 0.00 3.69
78 79 1.343069 GTCTATCAGGGCCAGGGTAG 58.657 60.000 6.18 7.78 0.00 3.18
79 80 0.941963 TCTATCAGGGCCAGGGTAGT 59.058 55.000 6.18 0.00 0.00 2.73
80 81 1.294068 TCTATCAGGGCCAGGGTAGTT 59.706 52.381 6.18 0.00 0.00 2.24
81 82 1.417890 CTATCAGGGCCAGGGTAGTTG 59.582 57.143 6.18 0.00 0.00 3.16
82 83 1.281925 ATCAGGGCCAGGGTAGTTGG 61.282 60.000 6.18 0.00 38.78 3.77
83 84 2.614013 AGGGCCAGGGTAGTTGGG 60.614 66.667 6.18 0.00 36.19 4.12
86 87 2.683475 GCCAGGGTAGTTGGGCAT 59.317 61.111 0.00 0.00 45.70 4.40
87 88 1.919771 GCCAGGGTAGTTGGGCATA 59.080 57.895 0.00 0.00 45.70 3.14
88 89 0.478507 GCCAGGGTAGTTGGGCATAT 59.521 55.000 0.00 0.00 45.70 1.78
89 90 1.819305 GCCAGGGTAGTTGGGCATATG 60.819 57.143 0.00 0.00 45.70 1.78
90 91 1.202927 CCAGGGTAGTTGGGCATATGG 60.203 57.143 4.56 0.00 31.87 2.74
91 92 1.774254 CAGGGTAGTTGGGCATATGGA 59.226 52.381 4.56 0.00 0.00 3.41
92 93 1.774856 AGGGTAGTTGGGCATATGGAC 59.225 52.381 4.56 0.00 0.00 4.02
93 94 1.774856 GGGTAGTTGGGCATATGGACT 59.225 52.381 4.56 0.00 0.00 3.85
94 95 2.487265 GGGTAGTTGGGCATATGGACTG 60.487 54.545 4.56 0.00 0.00 3.51
95 96 2.438021 GGTAGTTGGGCATATGGACTGA 59.562 50.000 4.56 0.00 0.00 3.41
96 97 3.118038 GGTAGTTGGGCATATGGACTGAA 60.118 47.826 4.56 0.00 0.00 3.02
97 98 3.004752 AGTTGGGCATATGGACTGAAC 57.995 47.619 4.56 0.00 0.00 3.18
98 99 2.308570 AGTTGGGCATATGGACTGAACA 59.691 45.455 4.56 0.00 0.00 3.18
99 100 3.088532 GTTGGGCATATGGACTGAACAA 58.911 45.455 4.56 0.00 0.00 2.83
100 101 2.722094 TGGGCATATGGACTGAACAAC 58.278 47.619 4.56 0.00 0.00 3.32
101 102 2.040947 TGGGCATATGGACTGAACAACA 59.959 45.455 4.56 0.00 0.00 3.33
102 103 3.290710 GGGCATATGGACTGAACAACAT 58.709 45.455 4.56 0.00 0.00 2.71
103 104 3.067180 GGGCATATGGACTGAACAACATG 59.933 47.826 4.56 0.00 0.00 3.21
104 105 3.067180 GGCATATGGACTGAACAACATGG 59.933 47.826 4.56 0.00 0.00 3.66
105 106 3.696051 GCATATGGACTGAACAACATGGT 59.304 43.478 4.56 0.00 0.00 3.55
106 107 4.158394 GCATATGGACTGAACAACATGGTT 59.842 41.667 4.56 0.00 0.00 3.67
107 108 5.336690 GCATATGGACTGAACAACATGGTTT 60.337 40.000 4.56 0.00 0.00 3.27
108 109 4.589216 ATGGACTGAACAACATGGTTTG 57.411 40.909 0.00 0.00 0.00 2.93
109 110 3.625853 TGGACTGAACAACATGGTTTGA 58.374 40.909 0.00 0.00 0.00 2.69
110 111 4.214310 TGGACTGAACAACATGGTTTGAT 58.786 39.130 0.00 0.00 0.00 2.57
111 112 4.648762 TGGACTGAACAACATGGTTTGATT 59.351 37.500 0.00 0.00 0.00 2.57
112 113 5.221224 TGGACTGAACAACATGGTTTGATTC 60.221 40.000 0.00 1.96 0.00 2.52
113 114 5.200368 ACTGAACAACATGGTTTGATTCC 57.800 39.130 0.00 0.00 0.00 3.01
114 115 4.895297 ACTGAACAACATGGTTTGATTCCT 59.105 37.500 0.00 0.00 0.00 3.36
115 116 5.199024 TGAACAACATGGTTTGATTCCTG 57.801 39.130 0.00 0.00 0.00 3.86
116 117 4.648762 TGAACAACATGGTTTGATTCCTGT 59.351 37.500 0.00 0.00 0.00 4.00
117 118 4.589216 ACAACATGGTTTGATTCCTGTG 57.411 40.909 0.00 0.00 0.00 3.66
118 119 4.214310 ACAACATGGTTTGATTCCTGTGA 58.786 39.130 0.00 0.00 0.00 3.58
119 120 4.834496 ACAACATGGTTTGATTCCTGTGAT 59.166 37.500 0.00 0.00 0.00 3.06
120 121 6.009589 ACAACATGGTTTGATTCCTGTGATA 58.990 36.000 0.00 0.00 0.00 2.15
121 122 6.151648 ACAACATGGTTTGATTCCTGTGATAG 59.848 38.462 0.00 0.00 0.00 2.08
122 123 5.819991 ACATGGTTTGATTCCTGTGATAGT 58.180 37.500 0.00 0.00 0.00 2.12
123 124 6.248433 ACATGGTTTGATTCCTGTGATAGTT 58.752 36.000 0.00 0.00 0.00 2.24
124 125 6.721208 ACATGGTTTGATTCCTGTGATAGTTT 59.279 34.615 0.00 0.00 0.00 2.66
125 126 7.233348 ACATGGTTTGATTCCTGTGATAGTTTT 59.767 33.333 0.00 0.00 0.00 2.43
126 127 7.595819 TGGTTTGATTCCTGTGATAGTTTTT 57.404 32.000 0.00 0.00 0.00 1.94
159 160 3.650369 GGACAATGTCCGTGCGTT 58.350 55.556 17.46 0.00 43.14 4.84
160 161 1.206578 GGACAATGTCCGTGCGTTG 59.793 57.895 17.46 6.80 43.14 4.10
161 162 1.440353 GACAATGTCCGTGCGTTGC 60.440 57.895 1.10 0.00 38.54 4.17
162 163 2.111932 GACAATGTCCGTGCGTTGCA 62.112 55.000 1.10 0.00 38.54 4.08
163 164 1.009108 CAATGTCCGTGCGTTGCAA 60.009 52.632 0.00 0.00 41.47 4.08
164 165 1.008995 AATGTCCGTGCGTTGCAAC 60.009 52.632 19.89 19.89 41.47 4.17
181 182 7.209471 GTTGCAACGGGATATAAATATTCCA 57.791 36.000 14.90 0.00 38.16 3.53
182 183 7.305474 GTTGCAACGGGATATAAATATTCCAG 58.695 38.462 14.90 3.78 38.16 3.86
183 184 6.539173 TGCAACGGGATATAAATATTCCAGT 58.461 36.000 7.85 4.28 38.16 4.00
184 185 7.681679 TGCAACGGGATATAAATATTCCAGTA 58.318 34.615 7.85 0.00 38.16 2.74
185 186 7.822334 TGCAACGGGATATAAATATTCCAGTAG 59.178 37.037 7.85 0.00 38.16 2.57
186 187 7.822822 GCAACGGGATATAAATATTCCAGTAGT 59.177 37.037 7.85 0.00 38.16 2.73
202 203 9.686683 ATTCCAGTAGTATGTTAGCTTTTGATT 57.313 29.630 0.00 0.00 0.00 2.57
210 211 9.338622 AGTATGTTAGCTTTTGATTATGTACCC 57.661 33.333 0.00 0.00 0.00 3.69
211 212 9.116067 GTATGTTAGCTTTTGATTATGTACCCA 57.884 33.333 0.00 0.00 0.00 4.51
212 213 8.766994 ATGTTAGCTTTTGATTATGTACCCAT 57.233 30.769 0.00 0.00 34.97 4.00
213 214 8.588290 TGTTAGCTTTTGATTATGTACCCATT 57.412 30.769 0.00 0.00 32.29 3.16
214 215 9.688091 TGTTAGCTTTTGATTATGTACCCATTA 57.312 29.630 0.00 0.00 32.29 1.90
218 219 8.143835 AGCTTTTGATTATGTACCCATTAATGC 58.856 33.333 10.11 0.00 32.29 3.56
219 220 7.925483 GCTTTTGATTATGTACCCATTAATGCA 59.075 33.333 10.11 3.09 32.29 3.96
220 221 9.814899 CTTTTGATTATGTACCCATTAATGCAA 57.185 29.630 10.11 2.34 32.29 4.08
280 281 9.965902 ATTCACCTTATAGTTTGATGAGAAGTT 57.034 29.630 0.00 0.00 0.00 2.66
281 282 9.793259 TTCACCTTATAGTTTGATGAGAAGTTT 57.207 29.630 0.00 0.00 0.00 2.66
282 283 9.219603 TCACCTTATAGTTTGATGAGAAGTTTG 57.780 33.333 0.00 0.00 0.00 2.93
283 284 9.219603 CACCTTATAGTTTGATGAGAAGTTTGA 57.780 33.333 0.00 0.00 0.00 2.69
284 285 9.965902 ACCTTATAGTTTGATGAGAAGTTTGAT 57.034 29.630 0.00 0.00 0.00 2.57
291 292 9.778741 AGTTTGATGAGAAGTTTGATAAGTACA 57.221 29.630 0.00 0.00 0.00 2.90
311 312 9.965824 AAGTACATTAAAGTGGAATTTGTTCAG 57.034 29.630 0.00 0.00 0.00 3.02
312 313 9.349713 AGTACATTAAAGTGGAATTTGTTCAGA 57.650 29.630 0.00 0.00 0.00 3.27
313 314 9.959749 GTACATTAAAGTGGAATTTGTTCAGAA 57.040 29.630 0.00 0.00 0.00 3.02
315 316 9.533253 ACATTAAAGTGGAATTTGTTCAGAAAG 57.467 29.630 0.00 0.00 0.00 2.62
316 317 9.533253 CATTAAAGTGGAATTTGTTCAGAAAGT 57.467 29.630 0.00 0.00 0.00 2.66
320 321 7.881775 AGTGGAATTTGTTCAGAAAGTAAGT 57.118 32.000 0.00 0.00 0.00 2.24
321 322 8.974060 AGTGGAATTTGTTCAGAAAGTAAGTA 57.026 30.769 0.00 0.00 0.00 2.24
322 323 9.403583 AGTGGAATTTGTTCAGAAAGTAAGTAA 57.596 29.630 0.00 0.00 0.00 2.24
343 344 8.677148 AGTAAATTAAGGTGATTGCATATCGT 57.323 30.769 0.00 0.00 0.00 3.73
344 345 9.772973 AGTAAATTAAGGTGATTGCATATCGTA 57.227 29.630 0.00 0.00 0.00 3.43
347 348 7.615582 ATTAAGGTGATTGCATATCGTATGG 57.384 36.000 0.00 0.00 0.00 2.74
348 349 4.890158 AGGTGATTGCATATCGTATGGA 57.110 40.909 0.00 2.37 0.00 3.41
349 350 5.227569 AGGTGATTGCATATCGTATGGAA 57.772 39.130 11.91 11.91 34.02 3.53
350 351 5.240891 AGGTGATTGCATATCGTATGGAAG 58.759 41.667 13.87 0.00 33.06 3.46
351 352 5.012046 AGGTGATTGCATATCGTATGGAAGA 59.988 40.000 13.87 4.88 33.06 2.87
352 353 5.877012 GGTGATTGCATATCGTATGGAAGAT 59.123 40.000 13.87 3.22 33.06 2.40
353 354 6.372659 GGTGATTGCATATCGTATGGAAGATT 59.627 38.462 13.87 2.72 33.06 2.40
354 355 7.239271 GTGATTGCATATCGTATGGAAGATTG 58.761 38.462 13.87 0.00 33.06 2.67
355 356 6.372381 TGATTGCATATCGTATGGAAGATTGG 59.628 38.462 13.87 0.00 33.06 3.16
356 357 5.482163 TGCATATCGTATGGAAGATTGGA 57.518 39.130 6.99 0.00 0.00 3.53
357 358 5.237815 TGCATATCGTATGGAAGATTGGAC 58.762 41.667 6.99 0.00 0.00 4.02
358 359 4.327357 GCATATCGTATGGAAGATTGGACG 59.673 45.833 6.99 0.00 0.00 4.79
359 360 5.709966 CATATCGTATGGAAGATTGGACGA 58.290 41.667 0.00 0.00 42.75 4.20
360 361 3.710326 TCGTATGGAAGATTGGACGAG 57.290 47.619 0.00 0.00 34.66 4.18
361 362 2.361119 TCGTATGGAAGATTGGACGAGG 59.639 50.000 0.00 0.00 34.66 4.63
362 363 2.545952 CGTATGGAAGATTGGACGAGGG 60.546 54.545 0.00 0.00 32.20 4.30
363 364 0.839946 ATGGAAGATTGGACGAGGGG 59.160 55.000 0.00 0.00 0.00 4.79
364 365 1.271840 TGGAAGATTGGACGAGGGGG 61.272 60.000 0.00 0.00 0.00 5.40
365 366 1.272554 GGAAGATTGGACGAGGGGGT 61.273 60.000 0.00 0.00 0.00 4.95
366 367 0.107654 GAAGATTGGACGAGGGGGTG 60.108 60.000 0.00 0.00 0.00 4.61
367 368 1.562672 AAGATTGGACGAGGGGGTGG 61.563 60.000 0.00 0.00 0.00 4.61
368 369 2.204090 ATTGGACGAGGGGGTGGT 60.204 61.111 0.00 0.00 0.00 4.16
369 370 2.536997 GATTGGACGAGGGGGTGGTG 62.537 65.000 0.00 0.00 0.00 4.17
373 374 4.585216 ACGAGGGGGTGGTGGGAA 62.585 66.667 0.00 0.00 0.00 3.97
374 375 3.717294 CGAGGGGGTGGTGGGAAG 61.717 72.222 0.00 0.00 0.00 3.46
375 376 2.204090 GAGGGGGTGGTGGGAAGA 60.204 66.667 0.00 0.00 0.00 2.87
376 377 1.850755 GAGGGGGTGGTGGGAAGAA 60.851 63.158 0.00 0.00 0.00 2.52
377 378 1.388217 AGGGGGTGGTGGGAAGAAA 60.388 57.895 0.00 0.00 0.00 2.52
378 379 1.002242 AGGGGGTGGTGGGAAGAAAA 61.002 55.000 0.00 0.00 0.00 2.29
379 380 0.541998 GGGGGTGGTGGGAAGAAAAG 60.542 60.000 0.00 0.00 0.00 2.27
380 381 0.187606 GGGGTGGTGGGAAGAAAAGT 59.812 55.000 0.00 0.00 0.00 2.66
381 382 1.328279 GGGTGGTGGGAAGAAAAGTG 58.672 55.000 0.00 0.00 0.00 3.16
382 383 1.133606 GGGTGGTGGGAAGAAAAGTGA 60.134 52.381 0.00 0.00 0.00 3.41
383 384 2.661718 GGTGGTGGGAAGAAAAGTGAA 58.338 47.619 0.00 0.00 0.00 3.18
384 385 3.028130 GGTGGTGGGAAGAAAAGTGAAA 58.972 45.455 0.00 0.00 0.00 2.69
385 386 3.181479 GGTGGTGGGAAGAAAAGTGAAAC 60.181 47.826 0.00 0.00 0.00 2.78
386 387 3.445805 GTGGTGGGAAGAAAAGTGAAACA 59.554 43.478 0.00 0.00 41.43 2.83
387 388 4.099419 GTGGTGGGAAGAAAAGTGAAACAT 59.901 41.667 0.00 0.00 41.43 2.71
388 389 4.099266 TGGTGGGAAGAAAAGTGAAACATG 59.901 41.667 0.00 0.00 41.43 3.21
389 390 4.501400 GGTGGGAAGAAAAGTGAAACATGG 60.501 45.833 0.00 0.00 41.43 3.66
390 391 4.340950 GTGGGAAGAAAAGTGAAACATGGA 59.659 41.667 0.00 0.00 41.43 3.41
391 392 4.959210 TGGGAAGAAAAGTGAAACATGGAA 59.041 37.500 0.00 0.00 41.43 3.53
392 393 5.163457 TGGGAAGAAAAGTGAAACATGGAAC 60.163 40.000 0.00 0.00 41.43 3.62
393 394 5.289595 GGAAGAAAAGTGAAACATGGAACC 58.710 41.667 0.00 0.00 41.43 3.62
394 395 5.069119 GGAAGAAAAGTGAAACATGGAACCT 59.931 40.000 0.00 0.00 41.43 3.50
395 396 6.406961 GGAAGAAAAGTGAAACATGGAACCTT 60.407 38.462 0.00 0.00 41.43 3.50
396 397 7.201875 GGAAGAAAAGTGAAACATGGAACCTTA 60.202 37.037 0.00 0.00 41.43 2.69
397 398 7.039313 AGAAAAGTGAAACATGGAACCTTAC 57.961 36.000 0.00 0.00 41.43 2.34
398 399 6.605594 AGAAAAGTGAAACATGGAACCTTACA 59.394 34.615 0.00 0.00 41.43 2.41
399 400 6.976934 AAAGTGAAACATGGAACCTTACAT 57.023 33.333 0.00 0.00 41.43 2.29
400 401 6.976934 AAGTGAAACATGGAACCTTACATT 57.023 33.333 0.00 0.00 41.43 2.71
401 402 6.575162 AGTGAAACATGGAACCTTACATTC 57.425 37.500 0.00 0.00 41.43 2.67
402 403 6.306987 AGTGAAACATGGAACCTTACATTCT 58.693 36.000 0.00 0.00 41.43 2.40
403 404 6.777580 AGTGAAACATGGAACCTTACATTCTT 59.222 34.615 0.00 0.00 41.43 2.52
404 405 7.287696 AGTGAAACATGGAACCTTACATTCTTT 59.712 33.333 0.00 0.00 41.43 2.52
405 406 7.926018 GTGAAACATGGAACCTTACATTCTTTT 59.074 33.333 0.00 0.00 36.32 2.27
406 407 8.482128 TGAAACATGGAACCTTACATTCTTTTT 58.518 29.630 0.00 0.00 26.26 1.94
407 408 9.974980 GAAACATGGAACCTTACATTCTTTTTA 57.025 29.630 0.00 0.00 26.26 1.52
409 410 9.981114 AACATGGAACCTTACATTCTTTTTAAG 57.019 29.630 0.00 0.00 26.26 1.85
410 411 9.143155 ACATGGAACCTTACATTCTTTTTAAGT 57.857 29.630 0.00 0.00 26.26 2.24
411 412 9.981114 CATGGAACCTTACATTCTTTTTAAGTT 57.019 29.630 0.00 0.00 26.26 2.66
440 441 9.997172 ATATATAGAGAGAGAGAGAGACAGAGA 57.003 37.037 0.00 0.00 0.00 3.10
441 442 8.907829 ATATAGAGAGAGAGAGAGACAGAGAT 57.092 38.462 0.00 0.00 0.00 2.75
442 443 9.997172 ATATAGAGAGAGAGAGAGACAGAGATA 57.003 37.037 0.00 0.00 0.00 1.98
443 444 6.662865 AGAGAGAGAGAGAGACAGAGATAG 57.337 45.833 0.00 0.00 0.00 2.08
444 445 6.139671 AGAGAGAGAGAGAGACAGAGATAGT 58.860 44.000 0.00 0.00 0.00 2.12
445 446 6.613271 AGAGAGAGAGAGAGACAGAGATAGTT 59.387 42.308 0.00 0.00 0.00 2.24
446 447 7.126421 AGAGAGAGAGAGAGACAGAGATAGTTT 59.874 40.741 0.00 0.00 0.00 2.66
447 448 7.633789 AGAGAGAGAGAGACAGAGATAGTTTT 58.366 38.462 0.00 0.00 0.00 2.43
448 449 7.554118 AGAGAGAGAGAGACAGAGATAGTTTTG 59.446 40.741 0.00 0.00 0.00 2.44
449 450 6.095440 AGAGAGAGAGACAGAGATAGTTTTGC 59.905 42.308 0.00 0.00 0.00 3.68
450 451 5.127031 AGAGAGAGACAGAGATAGTTTTGCC 59.873 44.000 0.00 0.00 0.00 4.52
451 452 4.109050 GAGAGACAGAGATAGTTTTGCCG 58.891 47.826 0.00 0.00 0.00 5.69
452 453 3.764434 AGAGACAGAGATAGTTTTGCCGA 59.236 43.478 0.00 0.00 0.00 5.54
453 454 4.404073 AGAGACAGAGATAGTTTTGCCGAT 59.596 41.667 0.00 0.00 0.00 4.18
454 455 5.594725 AGAGACAGAGATAGTTTTGCCGATA 59.405 40.000 0.00 0.00 0.00 2.92
455 456 6.096987 AGAGACAGAGATAGTTTTGCCGATAA 59.903 38.462 0.00 0.00 0.00 1.75
456 457 6.821388 AGACAGAGATAGTTTTGCCGATAAT 58.179 36.000 0.00 0.00 0.00 1.28
457 458 7.275920 AGACAGAGATAGTTTTGCCGATAATT 58.724 34.615 0.00 0.00 0.00 1.40
458 459 7.225538 AGACAGAGATAGTTTTGCCGATAATTG 59.774 37.037 0.00 0.00 0.00 2.32
459 460 6.823689 ACAGAGATAGTTTTGCCGATAATTGT 59.176 34.615 0.00 0.00 0.00 2.71
460 461 7.985184 ACAGAGATAGTTTTGCCGATAATTGTA 59.015 33.333 0.00 0.00 0.00 2.41
461 462 8.993121 CAGAGATAGTTTTGCCGATAATTGTAT 58.007 33.333 0.00 0.00 0.00 2.29
462 463 8.993121 AGAGATAGTTTTGCCGATAATTGTATG 58.007 33.333 0.00 0.00 0.00 2.39
463 464 8.902540 AGATAGTTTTGCCGATAATTGTATGA 57.097 30.769 0.00 0.00 0.00 2.15
464 465 8.993121 AGATAGTTTTGCCGATAATTGTATGAG 58.007 33.333 0.00 0.00 0.00 2.90
465 466 8.902540 ATAGTTTTGCCGATAATTGTATGAGA 57.097 30.769 0.00 0.00 0.00 3.27
466 467 7.624360 AGTTTTGCCGATAATTGTATGAGAA 57.376 32.000 0.00 0.00 0.00 2.87
467 468 8.050778 AGTTTTGCCGATAATTGTATGAGAAA 57.949 30.769 0.00 0.00 0.00 2.52
468 469 7.968405 AGTTTTGCCGATAATTGTATGAGAAAC 59.032 33.333 0.00 0.00 0.00 2.78
469 470 6.993786 TTGCCGATAATTGTATGAGAAACA 57.006 33.333 0.00 0.00 0.00 2.83
470 471 6.358118 TGCCGATAATTGTATGAGAAACAC 57.642 37.500 0.00 0.00 0.00 3.32
471 472 6.112734 TGCCGATAATTGTATGAGAAACACT 58.887 36.000 0.00 0.00 0.00 3.55
472 473 7.269316 TGCCGATAATTGTATGAGAAACACTA 58.731 34.615 0.00 0.00 0.00 2.74
473 474 7.766738 TGCCGATAATTGTATGAGAAACACTAA 59.233 33.333 0.00 0.00 0.00 2.24
474 475 8.774586 GCCGATAATTGTATGAGAAACACTAAT 58.225 33.333 0.00 0.00 0.00 1.73
509 510 4.688511 TTTTTCAGCGTTGTACTGTGTT 57.311 36.364 0.00 0.00 36.50 3.32
510 511 5.798015 TTTTTCAGCGTTGTACTGTGTTA 57.202 34.783 0.00 0.00 36.50 2.41
511 512 5.798015 TTTTCAGCGTTGTACTGTGTTAA 57.202 34.783 0.00 0.00 36.50 2.01
512 513 5.798015 TTTCAGCGTTGTACTGTGTTAAA 57.202 34.783 0.00 0.00 36.50 1.52
513 514 5.398176 TTCAGCGTTGTACTGTGTTAAAG 57.602 39.130 0.00 0.00 36.50 1.85
514 515 4.684877 TCAGCGTTGTACTGTGTTAAAGA 58.315 39.130 0.00 0.00 36.50 2.52
515 516 5.110598 TCAGCGTTGTACTGTGTTAAAGAA 58.889 37.500 0.00 0.00 36.50 2.52
516 517 5.581479 TCAGCGTTGTACTGTGTTAAAGAAA 59.419 36.000 0.00 0.00 36.50 2.52
517 518 5.675444 CAGCGTTGTACTGTGTTAAAGAAAC 59.325 40.000 0.00 0.00 38.67 2.78
518 519 5.352016 AGCGTTGTACTGTGTTAAAGAAACA 59.648 36.000 0.00 0.00 45.90 2.83
537 538 9.520515 AAGAAACAAATAGTATGAGAACCATGT 57.479 29.630 0.00 0.00 36.71 3.21
538 539 8.950210 AGAAACAAATAGTATGAGAACCATGTG 58.050 33.333 0.00 0.00 36.71 3.21
539 540 8.862325 AAACAAATAGTATGAGAACCATGTGA 57.138 30.769 0.00 0.00 36.71 3.58
540 541 7.849804 ACAAATAGTATGAGAACCATGTGAC 57.150 36.000 0.00 0.00 36.71 3.67
541 542 6.823689 ACAAATAGTATGAGAACCATGTGACC 59.176 38.462 0.00 0.00 36.71 4.02
542 543 3.914426 AGTATGAGAACCATGTGACCC 57.086 47.619 0.00 0.00 36.71 4.46
543 544 2.168521 AGTATGAGAACCATGTGACCCG 59.831 50.000 0.00 0.00 36.71 5.28
544 545 0.984230 ATGAGAACCATGTGACCCGT 59.016 50.000 0.00 0.00 33.39 5.28
545 546 1.634960 TGAGAACCATGTGACCCGTA 58.365 50.000 0.00 0.00 0.00 4.02
546 547 2.184533 TGAGAACCATGTGACCCGTAT 58.815 47.619 0.00 0.00 0.00 3.06
547 548 2.093711 TGAGAACCATGTGACCCGTATG 60.094 50.000 0.00 0.00 0.00 2.39
548 549 1.209504 AGAACCATGTGACCCGTATGG 59.790 52.381 0.00 0.00 45.37 2.74
563 564 5.235305 CCGTATGGGCAGAAAATATATGC 57.765 43.478 0.00 0.00 39.25 3.14
564 565 4.699735 CCGTATGGGCAGAAAATATATGCA 59.300 41.667 0.00 0.00 41.78 3.96
565 566 5.163723 CCGTATGGGCAGAAAATATATGCAG 60.164 44.000 0.00 0.00 41.78 4.41
566 567 4.796038 ATGGGCAGAAAATATATGCAGC 57.204 40.909 0.00 0.00 41.78 5.25
567 568 2.892852 TGGGCAGAAAATATATGCAGCC 59.107 45.455 0.00 0.00 41.78 4.85
568 569 3.582714 GGCAGAAAATATATGCAGCCC 57.417 47.619 0.00 0.00 41.78 5.19
569 570 3.160269 GGCAGAAAATATATGCAGCCCT 58.840 45.455 0.00 0.00 41.78 5.19
570 571 4.335416 GGCAGAAAATATATGCAGCCCTA 58.665 43.478 0.00 0.00 41.78 3.53
587 588 6.238484 GCAGCCCTATATTTGTACTCTTGTTG 60.238 42.308 0.00 0.00 0.00 3.33
588 589 6.260936 CAGCCCTATATTTGTACTCTTGTTGG 59.739 42.308 0.00 0.00 0.00 3.77
592 593 9.408648 CCCTATATTTGTACTCTTGTTGGAATT 57.591 33.333 0.00 0.00 0.00 2.17
598 599 9.744468 ATTTGTACTCTTGTTGGAATTGTTTAC 57.256 29.630 0.00 0.00 0.00 2.01
676 681 5.422331 CACTATCTTCCAAACTGAGGGAGTA 59.578 44.000 0.00 0.00 33.20 2.59
684 689 0.323542 ACTGAGGGAGTACCGGAGTG 60.324 60.000 9.46 0.00 46.96 3.51
712 717 2.238521 GGGTTTGGAGTTGCTTCATGA 58.761 47.619 0.00 0.00 0.00 3.07
760 765 2.340427 GCAAGCTGCCACCAGTTTA 58.660 52.632 0.00 0.00 40.02 2.01
882 887 0.801251 GCAAGCACTCATGGACAGTC 59.199 55.000 0.00 0.00 0.00 3.51
891 896 1.198408 TCATGGACAGTCGACACGTAC 59.802 52.381 19.50 15.34 0.00 3.67
892 897 1.068816 CATGGACAGTCGACACGTACA 60.069 52.381 21.17 21.17 0.00 2.90
908 913 6.346096 ACACGTACACATGGAGCTATAAATT 58.654 36.000 0.00 0.00 0.00 1.82
935 940 1.669115 CTCCTCAACGCCACCACAG 60.669 63.158 0.00 0.00 0.00 3.66
938 943 4.947147 TCAACGCCACCACAGCCC 62.947 66.667 0.00 0.00 0.00 5.19
948 953 2.554272 CACAGCCCACGTTAACGC 59.446 61.111 27.07 11.29 44.43 4.84
949 954 2.667199 ACAGCCCACGTTAACGCC 60.667 61.111 27.07 13.16 44.43 5.68
950 955 2.666862 CAGCCCACGTTAACGCCA 60.667 61.111 27.07 0.00 44.43 5.69
955 960 1.003851 CCCACGTTAACGCCATACAG 58.996 55.000 27.07 8.40 44.43 2.74
967 972 2.368439 GCCATACAGCCATCTCAAACA 58.632 47.619 0.00 0.00 0.00 2.83
973 978 0.981183 AGCCATCTCAAACACCGGTA 59.019 50.000 6.87 0.00 0.00 4.02
989 994 1.372499 GTATATCAAGGCGCGCCGA 60.372 57.895 41.70 33.68 41.95 5.54
990 995 1.372499 TATATCAAGGCGCGCCGAC 60.372 57.895 41.70 21.20 41.95 4.79
1006 1011 1.571460 GACGATCAATCCATGGCGC 59.429 57.895 6.96 0.00 32.78 6.53
1024 1029 1.215647 CGGCAGCTCGTAGGTCTTT 59.784 57.895 0.00 0.00 0.00 2.52
1027 1032 0.992802 GCAGCTCGTAGGTCTTTTCG 59.007 55.000 0.00 0.00 0.00 3.46
1029 1034 0.601558 AGCTCGTAGGTCTTTTCGCA 59.398 50.000 0.00 0.00 0.00 5.10
1131 1136 0.101939 CGTTACTAGGGAAGCGGGAC 59.898 60.000 0.00 0.00 0.00 4.46
1333 1345 3.122445 GTGGTAACGTTAGCTACTTGTGC 59.878 47.826 30.93 7.68 42.51 4.57
1439 1451 1.202940 GGCAAGAAGGACCAGGACTTT 60.203 52.381 0.00 0.00 0.00 2.66
1456 1468 0.320374 TTTTGCGTCCTCTCCGATGT 59.680 50.000 0.00 0.00 0.00 3.06
1619 1631 0.456312 GCGTCGACCGTCTTGAGATT 60.456 55.000 10.58 0.00 39.32 2.40
1793 1805 2.557451 CGTCACGGAGAAGGACTCT 58.443 57.895 0.00 0.00 44.37 3.24
1907 1922 0.752054 TCCTTGGTCAAACGTACCGT 59.248 50.000 1.69 0.00 43.97 4.83
2079 2130 3.736720 AGTTGAAGTACTTTTCCGACCC 58.263 45.455 10.02 0.00 0.00 4.46
2088 2139 6.877236 AGTACTTTTCCGACCCGAATAATTA 58.123 36.000 0.00 0.00 0.00 1.40
2202 2543 1.616865 CCAGACAACGACCCTTAGTCA 59.383 52.381 0.00 0.00 46.69 3.41
2205 2546 4.421948 CAGACAACGACCCTTAGTCATAC 58.578 47.826 0.00 0.00 46.69 2.39
2210 2551 1.117150 GACCCTTAGTCATACGGGCA 58.883 55.000 0.00 0.00 43.00 5.36
2225 2566 0.175989 GGGCAACTCTCTTCCTACCG 59.824 60.000 0.00 0.00 0.00 4.02
2233 2574 2.029623 TCTCTTCCTACCGTGCATACC 58.970 52.381 0.00 0.00 0.00 2.73
2466 2909 6.766467 ACAAGGAGATAATAAAAACTAGGCGG 59.234 38.462 0.00 0.00 0.00 6.13
2478 2921 0.687354 CTAGGCGGCCATCCAATAGT 59.313 55.000 23.09 0.00 0.00 2.12
2480 2923 1.152963 GGCGGCCATCCAATAGTGT 60.153 57.895 15.62 0.00 0.00 3.55
2484 2927 2.032924 GCGGCCATCCAATAGTGTTAAC 59.967 50.000 2.24 0.00 0.00 2.01
2490 2933 6.238759 GGCCATCCAATAGTGTTAACTTGATC 60.239 42.308 7.22 0.00 37.88 2.92
2493 2936 8.184192 CCATCCAATAGTGTTAACTTGATCAAC 58.816 37.037 3.38 0.00 37.88 3.18
2513 2956 9.437045 GATCAACAAAATTGGTTTTCAAATGTC 57.563 29.630 0.00 0.00 39.05 3.06
2601 4248 2.505819 ACCAAAGATAGCACTGGGGTAG 59.494 50.000 3.73 0.00 32.94 3.18
2659 4309 3.189080 TGCAGTTGTTGTATCAGTGATGC 59.811 43.478 16.15 14.89 0.00 3.91
2665 4315 4.140536 TGTTGTATCAGTGATGCCAACAA 58.859 39.130 30.80 23.26 39.65 2.83
2674 4324 1.629353 TGATGCCAACAAATGCCCAAT 59.371 42.857 0.00 0.00 0.00 3.16
2675 4325 2.011222 GATGCCAACAAATGCCCAATG 58.989 47.619 0.00 0.00 0.00 2.82
2704 4354 6.073331 GCACATATATGGAAGAGAGCAAAGAC 60.073 42.308 16.96 0.00 0.00 3.01
2705 4355 6.988580 CACATATATGGAAGAGAGCAAAGACA 59.011 38.462 16.96 0.00 0.00 3.41
2715 4365 6.365970 AGAGAGCAAAGACAAGATAAGGAA 57.634 37.500 0.00 0.00 0.00 3.36
2721 4371 8.181904 AGCAAAGACAAGATAAGGAAAATCAA 57.818 30.769 0.00 0.00 0.00 2.57
2724 4374 9.971922 CAAAGACAAGATAAGGAAAATCAAGTT 57.028 29.630 0.00 0.00 0.00 2.66
2768 4418 2.575532 TCAAGTGGGAAGCACAGAAAG 58.424 47.619 0.00 0.00 0.00 2.62
2798 4448 1.821666 GCCCAATACGGCCAACCATAT 60.822 52.381 2.24 0.00 43.66 1.78
2812 4462 1.009078 CCATATGACCGCACACACTG 58.991 55.000 3.65 0.00 0.00 3.66
2821 4471 0.950555 CGCACACACTGGTATGCACT 60.951 55.000 0.00 0.00 37.97 4.40
2824 4474 1.800586 CACACACTGGTATGCACTGTC 59.199 52.381 0.00 0.00 0.00 3.51
2840 4490 1.188871 TGTCGTATGAGGTGCCCACA 61.189 55.000 0.40 0.00 0.00 4.17
2841 4491 0.460284 GTCGTATGAGGTGCCCACAG 60.460 60.000 0.40 0.00 0.00 3.66
2869 4520 2.477189 GCGTCCAACCCAACAAATATCG 60.477 50.000 0.00 0.00 0.00 2.92
2871 4522 3.425625 CGTCCAACCCAACAAATATCGTG 60.426 47.826 0.00 0.00 0.00 4.35
2877 4528 3.192633 ACCCAACAAATATCGTGAAAGGC 59.807 43.478 0.00 0.00 0.00 4.35
2882 4533 4.023291 ACAAATATCGTGAAAGGCCCAAT 58.977 39.130 0.00 0.00 0.00 3.16
2883 4534 4.142182 ACAAATATCGTGAAAGGCCCAATG 60.142 41.667 0.00 0.00 0.00 2.82
2931 4582 6.890979 GATGCTTAGCTTCCAAAGGATAAT 57.109 37.500 5.60 0.00 34.39 1.28
2932 4583 6.890979 ATGCTTAGCTTCCAAAGGATAATC 57.109 37.500 5.60 0.00 32.72 1.75
2933 4584 6.006275 TGCTTAGCTTCCAAAGGATAATCT 57.994 37.500 5.60 0.00 0.00 2.40
2934 4585 6.426587 TGCTTAGCTTCCAAAGGATAATCTT 58.573 36.000 5.60 0.00 0.00 2.40
2935 4586 6.891908 TGCTTAGCTTCCAAAGGATAATCTTT 59.108 34.615 5.60 0.00 37.44 2.52
2936 4587 7.397192 TGCTTAGCTTCCAAAGGATAATCTTTT 59.603 33.333 5.60 0.00 35.04 2.27
2937 4588 8.253810 GCTTAGCTTCCAAAGGATAATCTTTTT 58.746 33.333 0.00 0.00 35.04 1.94
2961 4612 6.642733 TTTTTCTTCCAGAGGATAGTCCAT 57.357 37.500 0.00 0.00 39.61 3.41
2962 4613 7.749377 TTTTTCTTCCAGAGGATAGTCCATA 57.251 36.000 0.00 0.00 39.61 2.74
2963 4614 6.732896 TTTCTTCCAGAGGATAGTCCATAC 57.267 41.667 0.00 0.00 39.61 2.39
2964 4615 5.403558 TCTTCCAGAGGATAGTCCATACA 57.596 43.478 0.00 0.00 39.61 2.29
2965 4616 5.389520 TCTTCCAGAGGATAGTCCATACAG 58.610 45.833 0.00 0.00 39.61 2.74
2966 4617 3.501349 TCCAGAGGATAGTCCATACAGC 58.499 50.000 0.00 0.00 39.61 4.40
2967 4618 3.117131 TCCAGAGGATAGTCCATACAGCA 60.117 47.826 0.00 0.00 39.61 4.41
2968 4619 3.837146 CCAGAGGATAGTCCATACAGCAT 59.163 47.826 0.00 0.00 39.61 3.79
2969 4620 4.285517 CCAGAGGATAGTCCATACAGCATT 59.714 45.833 0.00 0.00 39.61 3.56
2970 4621 5.221803 CCAGAGGATAGTCCATACAGCATTT 60.222 44.000 0.00 0.00 39.61 2.32
2971 4622 5.699915 CAGAGGATAGTCCATACAGCATTTG 59.300 44.000 0.00 0.00 39.61 2.32
2972 4623 4.978099 AGGATAGTCCATACAGCATTTGG 58.022 43.478 0.00 0.00 39.61 3.28
2973 4624 3.503748 GGATAGTCCATACAGCATTTGGC 59.496 47.826 0.00 0.00 38.68 4.52
2974 4625 4.987926 GGATAGTCCATACAGCATTTGGCA 60.988 45.833 0.00 0.00 40.12 4.92
2975 4626 6.772452 GGATAGTCCATACAGCATTTGGCAG 61.772 48.000 0.00 0.00 40.12 4.85
2976 4627 8.867474 GGATAGTCCATACAGCATTTGGCAGA 62.867 46.154 0.00 0.00 40.12 4.26
2988 4639 5.899299 GCATTTGGCAGAGAATACAATTCT 58.101 37.500 1.85 1.85 43.97 2.40
2989 4640 6.335777 GCATTTGGCAGAGAATACAATTCTT 58.664 36.000 3.80 0.00 43.97 2.52
2990 4641 6.815142 GCATTTGGCAGAGAATACAATTCTTT 59.185 34.615 3.80 0.00 43.97 2.52
2991 4642 7.201496 GCATTTGGCAGAGAATACAATTCTTTG 60.201 37.037 13.17 13.17 43.97 2.77
2993 4644 6.899393 TGGCAGAGAATACAATTCTTTGTT 57.101 33.333 16.81 0.00 43.57 2.83
2994 4645 6.913170 TGGCAGAGAATACAATTCTTTGTTC 58.087 36.000 16.81 11.95 43.57 3.18
2995 4646 6.071952 TGGCAGAGAATACAATTCTTTGTTCC 60.072 38.462 16.81 12.51 43.57 3.62
2996 4647 6.151817 GGCAGAGAATACAATTCTTTGTTCCT 59.848 38.462 16.81 2.68 43.57 3.36
2997 4648 7.336931 GGCAGAGAATACAATTCTTTGTTCCTA 59.663 37.037 16.81 0.00 43.57 2.94
2998 4649 8.730680 GCAGAGAATACAATTCTTTGTTCCTAA 58.269 33.333 16.81 0.00 43.57 2.69
3016 4667 9.781834 TGTTCCTAAATATAAGATGTTTTTGCG 57.218 29.630 0.00 0.00 0.00 4.85
3017 4668 9.997482 GTTCCTAAATATAAGATGTTTTTGCGA 57.003 29.630 0.00 0.00 0.00 5.10
3019 4670 9.997482 TCCTAAATATAAGATGTTTTTGCGAAC 57.003 29.630 0.00 0.00 0.00 3.95
3020 4671 9.233232 CCTAAATATAAGATGTTTTTGCGAACC 57.767 33.333 0.00 0.00 0.00 3.62
3021 4672 9.781834 CTAAATATAAGATGTTTTTGCGAACCA 57.218 29.630 0.00 0.00 0.00 3.67
3023 4674 9.651913 AAATATAAGATGTTTTTGCGAACCAAT 57.348 25.926 0.00 0.00 32.49 3.16
3024 4675 8.856490 ATATAAGATGTTTTTGCGAACCAATC 57.144 30.769 0.00 0.00 32.49 2.67
3025 4676 4.853924 AGATGTTTTTGCGAACCAATCT 57.146 36.364 0.00 0.00 32.49 2.40
3026 4677 4.549458 AGATGTTTTTGCGAACCAATCTG 58.451 39.130 4.21 0.00 32.49 2.90
3027 4678 3.791973 TGTTTTTGCGAACCAATCTGT 57.208 38.095 0.00 0.00 32.49 3.41
3028 4679 3.443037 TGTTTTTGCGAACCAATCTGTG 58.557 40.909 0.00 0.00 32.49 3.66
3041 4692 4.970662 CAATCTGTGGTTGGATGGTTAG 57.029 45.455 0.00 0.00 0.00 2.34
3042 4693 4.588899 CAATCTGTGGTTGGATGGTTAGA 58.411 43.478 0.00 0.00 0.00 2.10
3043 4694 3.981071 TCTGTGGTTGGATGGTTAGAG 57.019 47.619 0.00 0.00 0.00 2.43
3044 4695 2.571653 TCTGTGGTTGGATGGTTAGAGG 59.428 50.000 0.00 0.00 0.00 3.69
3045 4696 1.633432 TGTGGTTGGATGGTTAGAGGG 59.367 52.381 0.00 0.00 0.00 4.30
3046 4697 1.913419 GTGGTTGGATGGTTAGAGGGA 59.087 52.381 0.00 0.00 0.00 4.20
3047 4698 1.913419 TGGTTGGATGGTTAGAGGGAC 59.087 52.381 0.00 0.00 0.00 4.46
3048 4699 1.913419 GGTTGGATGGTTAGAGGGACA 59.087 52.381 0.00 0.00 0.00 4.02
3049 4700 2.092914 GGTTGGATGGTTAGAGGGACAG 60.093 54.545 0.00 0.00 0.00 3.51
3050 4701 2.572104 GTTGGATGGTTAGAGGGACAGT 59.428 50.000 0.00 0.00 0.00 3.55
3051 4702 2.187958 TGGATGGTTAGAGGGACAGTG 58.812 52.381 0.00 0.00 0.00 3.66
3052 4703 1.134371 GGATGGTTAGAGGGACAGTGC 60.134 57.143 0.00 0.00 0.00 4.40
3053 4704 1.834263 GATGGTTAGAGGGACAGTGCT 59.166 52.381 0.00 0.00 0.00 4.40
3054 4705 2.615986 TGGTTAGAGGGACAGTGCTA 57.384 50.000 0.00 0.00 0.00 3.49
3055 4706 3.116096 TGGTTAGAGGGACAGTGCTAT 57.884 47.619 0.00 0.00 0.00 2.97
3056 4707 3.031736 TGGTTAGAGGGACAGTGCTATC 58.968 50.000 0.00 0.00 0.00 2.08
3057 4708 3.301274 GGTTAGAGGGACAGTGCTATCT 58.699 50.000 5.83 5.83 0.00 1.98
3058 4709 3.707102 GGTTAGAGGGACAGTGCTATCTT 59.293 47.826 5.83 0.00 0.00 2.40
3059 4710 4.202172 GGTTAGAGGGACAGTGCTATCTTC 60.202 50.000 5.83 1.97 0.00 2.87
3060 4711 3.107402 AGAGGGACAGTGCTATCTTCA 57.893 47.619 0.00 0.00 0.00 3.02
3061 4712 3.030291 AGAGGGACAGTGCTATCTTCAG 58.970 50.000 0.00 0.00 0.00 3.02
3062 4713 1.484240 AGGGACAGTGCTATCTTCAGC 59.516 52.381 0.00 0.00 42.15 4.26
3063 4714 1.474143 GGGACAGTGCTATCTTCAGCC 60.474 57.143 0.00 0.00 41.04 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.298602 GGTTTTGCCCAGTTTTGCTG 58.701 50.000 0.00 0.00 44.63 4.41
2 3 0.908198 TGGTTTTGCCCAGTTTTGCT 59.092 45.000 0.00 0.00 36.04 3.91
3 4 1.743996 TTGGTTTTGCCCAGTTTTGC 58.256 45.000 0.00 0.00 35.49 3.68
4 5 3.119673 GGTTTTGGTTTTGCCCAGTTTTG 60.120 43.478 0.00 0.00 35.49 2.44
5 6 3.085533 GGTTTTGGTTTTGCCCAGTTTT 58.914 40.909 0.00 0.00 35.49 2.43
6 7 2.040412 TGGTTTTGGTTTTGCCCAGTTT 59.960 40.909 0.00 0.00 35.49 2.66
7 8 1.630878 TGGTTTTGGTTTTGCCCAGTT 59.369 42.857 0.00 0.00 35.49 3.16
8 9 1.209261 CTGGTTTTGGTTTTGCCCAGT 59.791 47.619 0.00 0.00 35.77 4.00
9 10 1.474855 CCTGGTTTTGGTTTTGCCCAG 60.475 52.381 0.00 0.00 39.32 4.45
10 11 0.543749 CCTGGTTTTGGTTTTGCCCA 59.456 50.000 0.00 0.00 36.04 5.36
11 12 0.544223 ACCTGGTTTTGGTTTTGCCC 59.456 50.000 0.00 0.00 33.34 5.36
12 13 3.762407 ATACCTGGTTTTGGTTTTGCC 57.238 42.857 3.84 0.00 38.88 4.52
13 14 4.698575 TGAATACCTGGTTTTGGTTTTGC 58.301 39.130 3.84 0.00 38.88 3.68
14 15 4.749598 GCTGAATACCTGGTTTTGGTTTTG 59.250 41.667 3.84 0.00 38.88 2.44
15 16 4.653801 AGCTGAATACCTGGTTTTGGTTTT 59.346 37.500 3.84 0.00 38.88 2.43
16 17 4.223144 AGCTGAATACCTGGTTTTGGTTT 58.777 39.130 3.84 0.00 38.88 3.27
17 18 3.826729 GAGCTGAATACCTGGTTTTGGTT 59.173 43.478 3.84 0.00 38.88 3.67
18 19 3.181434 TGAGCTGAATACCTGGTTTTGGT 60.181 43.478 3.84 0.00 41.28 3.67
19 20 3.420893 TGAGCTGAATACCTGGTTTTGG 58.579 45.455 3.84 0.24 0.00 3.28
20 21 5.297776 CCTATGAGCTGAATACCTGGTTTTG 59.702 44.000 3.84 0.00 0.00 2.44
21 22 5.440610 CCTATGAGCTGAATACCTGGTTTT 58.559 41.667 3.84 2.77 0.00 2.43
22 23 4.687219 GCCTATGAGCTGAATACCTGGTTT 60.687 45.833 3.84 0.00 0.00 3.27
23 24 3.181450 GCCTATGAGCTGAATACCTGGTT 60.181 47.826 3.84 0.00 0.00 3.67
24 25 2.370189 GCCTATGAGCTGAATACCTGGT 59.630 50.000 4.05 4.05 0.00 4.00
25 26 2.289945 GGCCTATGAGCTGAATACCTGG 60.290 54.545 0.00 0.00 0.00 4.45
26 27 2.369860 TGGCCTATGAGCTGAATACCTG 59.630 50.000 3.32 0.00 0.00 4.00
27 28 2.694397 TGGCCTATGAGCTGAATACCT 58.306 47.619 3.32 0.00 0.00 3.08
28 29 3.341823 CATGGCCTATGAGCTGAATACC 58.658 50.000 3.32 0.00 39.21 2.73
29 30 3.341823 CCATGGCCTATGAGCTGAATAC 58.658 50.000 14.52 0.00 39.21 1.89
30 31 2.290514 GCCATGGCCTATGAGCTGAATA 60.291 50.000 27.24 0.00 39.21 1.75
31 32 1.547223 GCCATGGCCTATGAGCTGAAT 60.547 52.381 27.24 0.00 39.21 2.57
32 33 0.179009 GCCATGGCCTATGAGCTGAA 60.179 55.000 27.24 0.00 39.21 3.02
33 34 1.453235 GCCATGGCCTATGAGCTGA 59.547 57.895 27.24 0.00 39.21 4.26
34 35 4.076244 GCCATGGCCTATGAGCTG 57.924 61.111 27.24 0.00 39.21 4.24
44 45 0.323360 TAGACAACTTGGGCCATGGC 60.323 55.000 29.47 29.47 41.06 4.40
45 46 2.301346 GATAGACAACTTGGGCCATGG 58.699 52.381 21.96 7.63 0.00 3.66
46 47 2.947652 CTGATAGACAACTTGGGCCATG 59.052 50.000 17.21 17.21 0.00 3.66
47 48 2.092212 CCTGATAGACAACTTGGGCCAT 60.092 50.000 7.26 0.00 0.00 4.40
48 49 1.281867 CCTGATAGACAACTTGGGCCA 59.718 52.381 0.00 0.00 0.00 5.36
49 50 1.408822 CCCTGATAGACAACTTGGGCC 60.409 57.143 0.00 0.00 0.00 5.80
50 51 2.044123 CCCTGATAGACAACTTGGGC 57.956 55.000 0.00 0.00 0.00 5.36
51 52 1.408822 GGCCCTGATAGACAACTTGGG 60.409 57.143 0.00 0.00 36.41 4.12
52 53 1.281867 TGGCCCTGATAGACAACTTGG 59.718 52.381 0.00 0.00 0.00 3.61
53 54 2.636830 CTGGCCCTGATAGACAACTTG 58.363 52.381 0.00 0.00 0.00 3.16
54 55 1.561542 CCTGGCCCTGATAGACAACTT 59.438 52.381 0.00 0.00 0.00 2.66
55 56 1.207791 CCTGGCCCTGATAGACAACT 58.792 55.000 0.00 0.00 0.00 3.16
56 57 0.181350 CCCTGGCCCTGATAGACAAC 59.819 60.000 0.00 0.00 0.00 3.32
57 58 0.253160 ACCCTGGCCCTGATAGACAA 60.253 55.000 0.00 0.00 0.00 3.18
58 59 0.639943 TACCCTGGCCCTGATAGACA 59.360 55.000 0.00 0.00 0.00 3.41
59 60 1.343069 CTACCCTGGCCCTGATAGAC 58.657 60.000 0.00 0.00 0.00 2.59
60 61 0.941963 ACTACCCTGGCCCTGATAGA 59.058 55.000 0.00 0.00 0.00 1.98
61 62 1.417890 CAACTACCCTGGCCCTGATAG 59.582 57.143 0.00 0.00 0.00 2.08
62 63 1.507140 CAACTACCCTGGCCCTGATA 58.493 55.000 0.00 0.00 0.00 2.15
63 64 1.281925 CCAACTACCCTGGCCCTGAT 61.282 60.000 0.00 0.00 0.00 2.90
64 65 1.923395 CCAACTACCCTGGCCCTGA 60.923 63.158 0.00 0.00 0.00 3.86
65 66 2.677228 CCAACTACCCTGGCCCTG 59.323 66.667 0.00 0.00 0.00 4.45
66 67 2.614013 CCCAACTACCCTGGCCCT 60.614 66.667 0.00 0.00 32.10 5.19
67 68 4.442454 GCCCAACTACCCTGGCCC 62.442 72.222 0.00 0.00 37.94 5.80
68 69 1.641552 TATGCCCAACTACCCTGGCC 61.642 60.000 0.00 0.00 43.35 5.36
69 70 0.478507 ATATGCCCAACTACCCTGGC 59.521 55.000 0.00 0.00 44.27 4.85
70 71 1.202927 CCATATGCCCAACTACCCTGG 60.203 57.143 0.00 0.00 0.00 4.45
71 72 1.774254 TCCATATGCCCAACTACCCTG 59.226 52.381 0.00 0.00 0.00 4.45
72 73 1.774856 GTCCATATGCCCAACTACCCT 59.225 52.381 0.00 0.00 0.00 4.34
73 74 1.774856 AGTCCATATGCCCAACTACCC 59.225 52.381 0.00 0.00 0.00 3.69
74 75 2.438021 TCAGTCCATATGCCCAACTACC 59.562 50.000 0.00 0.00 0.00 3.18
75 76 3.838244 TCAGTCCATATGCCCAACTAC 57.162 47.619 0.00 0.00 0.00 2.73
76 77 3.521531 TGTTCAGTCCATATGCCCAACTA 59.478 43.478 0.00 0.00 0.00 2.24
77 78 2.308570 TGTTCAGTCCATATGCCCAACT 59.691 45.455 0.00 0.00 0.00 3.16
78 79 2.722094 TGTTCAGTCCATATGCCCAAC 58.278 47.619 0.00 0.00 0.00 3.77
79 80 3.088532 GTTGTTCAGTCCATATGCCCAA 58.911 45.455 0.00 0.00 0.00 4.12
80 81 2.040947 TGTTGTTCAGTCCATATGCCCA 59.959 45.455 0.00 0.00 0.00 5.36
81 82 2.722094 TGTTGTTCAGTCCATATGCCC 58.278 47.619 0.00 0.00 0.00 5.36
82 83 3.067180 CCATGTTGTTCAGTCCATATGCC 59.933 47.826 0.00 0.00 0.00 4.40
83 84 3.696051 ACCATGTTGTTCAGTCCATATGC 59.304 43.478 0.00 0.00 0.00 3.14
84 85 5.902613 AACCATGTTGTTCAGTCCATATG 57.097 39.130 0.00 0.00 0.00 1.78
85 86 6.009589 TCAAACCATGTTGTTCAGTCCATAT 58.990 36.000 0.00 0.00 0.00 1.78
86 87 5.380900 TCAAACCATGTTGTTCAGTCCATA 58.619 37.500 0.00 0.00 0.00 2.74
87 88 4.214310 TCAAACCATGTTGTTCAGTCCAT 58.786 39.130 0.00 0.00 0.00 3.41
88 89 3.625853 TCAAACCATGTTGTTCAGTCCA 58.374 40.909 0.00 0.00 0.00 4.02
89 90 4.853924 ATCAAACCATGTTGTTCAGTCC 57.146 40.909 0.00 0.00 0.00 3.85
90 91 5.010012 AGGAATCAAACCATGTTGTTCAGTC 59.990 40.000 0.00 0.00 0.00 3.51
91 92 4.895297 AGGAATCAAACCATGTTGTTCAGT 59.105 37.500 0.00 0.00 0.00 3.41
92 93 5.221303 ACAGGAATCAAACCATGTTGTTCAG 60.221 40.000 0.00 0.00 0.00 3.02
93 94 4.648762 ACAGGAATCAAACCATGTTGTTCA 59.351 37.500 0.00 0.00 0.00 3.18
94 95 4.984161 CACAGGAATCAAACCATGTTGTTC 59.016 41.667 0.00 0.00 0.00 3.18
95 96 4.648762 TCACAGGAATCAAACCATGTTGTT 59.351 37.500 0.00 0.00 0.00 2.83
96 97 4.214310 TCACAGGAATCAAACCATGTTGT 58.786 39.130 0.00 0.00 0.00 3.32
97 98 4.852134 TCACAGGAATCAAACCATGTTG 57.148 40.909 0.00 0.00 0.00 3.33
98 99 6.248433 ACTATCACAGGAATCAAACCATGTT 58.752 36.000 0.00 0.00 0.00 2.71
99 100 5.819991 ACTATCACAGGAATCAAACCATGT 58.180 37.500 0.00 0.00 0.00 3.21
100 101 6.764308 AACTATCACAGGAATCAAACCATG 57.236 37.500 0.00 0.00 0.00 3.66
101 102 7.781324 AAAACTATCACAGGAATCAAACCAT 57.219 32.000 0.00 0.00 0.00 3.55
102 103 7.595819 AAAAACTATCACAGGAATCAAACCA 57.404 32.000 0.00 0.00 0.00 3.67
143 144 1.440353 GCAACGCACGGACATTGTC 60.440 57.895 8.34 8.34 0.00 3.18
144 145 1.719725 TTGCAACGCACGGACATTGT 61.720 50.000 0.00 0.00 38.71 2.71
145 146 1.009108 TTGCAACGCACGGACATTG 60.009 52.632 0.00 0.00 38.71 2.82
146 147 1.008995 GTTGCAACGCACGGACATT 60.009 52.632 14.90 0.00 38.71 2.71
147 148 2.637025 GTTGCAACGCACGGACAT 59.363 55.556 14.90 0.00 38.71 3.06
148 149 3.931130 CGTTGCAACGCACGGACA 61.931 61.111 35.89 0.00 46.06 4.02
157 158 7.040686 ACTGGAATATTTATATCCCGTTGCAAC 60.041 37.037 19.89 19.89 0.00 4.17
158 159 7.001674 ACTGGAATATTTATATCCCGTTGCAA 58.998 34.615 0.00 0.00 0.00 4.08
159 160 6.539173 ACTGGAATATTTATATCCCGTTGCA 58.461 36.000 0.00 0.00 0.00 4.08
160 161 7.822822 ACTACTGGAATATTTATATCCCGTTGC 59.177 37.037 0.00 0.00 0.00 4.17
176 177 9.686683 AATCAAAAGCTAACATACTACTGGAAT 57.313 29.630 0.00 0.00 0.00 3.01
184 185 9.338622 GGGTACATAATCAAAAGCTAACATACT 57.661 33.333 0.00 0.00 0.00 2.12
185 186 9.116067 TGGGTACATAATCAAAAGCTAACATAC 57.884 33.333 0.00 0.00 0.00 2.39
186 187 9.860650 ATGGGTACATAATCAAAAGCTAACATA 57.139 29.630 0.00 0.00 34.99 2.29
187 188 8.766994 ATGGGTACATAATCAAAAGCTAACAT 57.233 30.769 0.00 0.00 34.99 2.71
188 189 8.588290 AATGGGTACATAATCAAAAGCTAACA 57.412 30.769 0.00 0.00 35.94 2.41
192 193 8.143835 GCATTAATGGGTACATAATCAAAAGCT 58.856 33.333 17.02 0.00 35.94 3.74
193 194 7.925483 TGCATTAATGGGTACATAATCAAAAGC 59.075 33.333 17.02 0.00 35.94 3.51
194 195 9.814899 TTGCATTAATGGGTACATAATCAAAAG 57.185 29.630 17.02 0.00 35.94 2.27
254 255 9.965902 AACTTCTCATCAAACTATAAGGTGAAT 57.034 29.630 0.00 0.00 0.00 2.57
255 256 9.793259 AAACTTCTCATCAAACTATAAGGTGAA 57.207 29.630 0.00 0.00 0.00 3.18
256 257 9.219603 CAAACTTCTCATCAAACTATAAGGTGA 57.780 33.333 0.00 0.00 0.00 4.02
257 258 9.219603 TCAAACTTCTCATCAAACTATAAGGTG 57.780 33.333 0.00 0.00 0.00 4.00
258 259 9.965902 ATCAAACTTCTCATCAAACTATAAGGT 57.034 29.630 0.00 0.00 0.00 3.50
265 266 9.778741 TGTACTTATCAAACTTCTCATCAAACT 57.221 29.630 0.00 0.00 0.00 2.66
285 286 9.965824 CTGAACAAATTCCACTTTAATGTACTT 57.034 29.630 0.00 0.00 33.49 2.24
286 287 9.349713 TCTGAACAAATTCCACTTTAATGTACT 57.650 29.630 0.00 0.00 33.49 2.73
287 288 9.959749 TTCTGAACAAATTCCACTTTAATGTAC 57.040 29.630 0.00 0.00 33.49 2.90
289 290 9.533253 CTTTCTGAACAAATTCCACTTTAATGT 57.467 29.630 0.00 0.00 33.49 2.71
290 291 9.533253 ACTTTCTGAACAAATTCCACTTTAATG 57.467 29.630 0.00 0.00 33.49 1.90
294 295 8.749354 ACTTACTTTCTGAACAAATTCCACTTT 58.251 29.630 0.00 0.00 33.49 2.66
295 296 8.293699 ACTTACTTTCTGAACAAATTCCACTT 57.706 30.769 0.00 0.00 33.49 3.16
296 297 7.881775 ACTTACTTTCTGAACAAATTCCACT 57.118 32.000 0.00 0.00 33.49 4.00
317 318 9.120538 ACGATATGCAATCACCTTAATTTACTT 57.879 29.630 0.00 0.00 0.00 2.24
318 319 8.677148 ACGATATGCAATCACCTTAATTTACT 57.323 30.769 0.00 0.00 0.00 2.24
321 322 8.514594 CCATACGATATGCAATCACCTTAATTT 58.485 33.333 0.00 0.00 0.00 1.82
322 323 7.882791 TCCATACGATATGCAATCACCTTAATT 59.117 33.333 0.00 0.00 0.00 1.40
323 324 7.394016 TCCATACGATATGCAATCACCTTAAT 58.606 34.615 0.00 0.00 0.00 1.40
324 325 6.764379 TCCATACGATATGCAATCACCTTAA 58.236 36.000 0.00 0.00 0.00 1.85
325 326 6.353404 TCCATACGATATGCAATCACCTTA 57.647 37.500 0.00 0.00 0.00 2.69
326 327 5.227569 TCCATACGATATGCAATCACCTT 57.772 39.130 0.00 0.00 0.00 3.50
327 328 4.890158 TCCATACGATATGCAATCACCT 57.110 40.909 0.00 0.00 0.00 4.00
328 329 5.237815 TCTTCCATACGATATGCAATCACC 58.762 41.667 0.00 0.00 0.00 4.02
329 330 6.974932 ATCTTCCATACGATATGCAATCAC 57.025 37.500 0.00 0.00 0.00 3.06
330 331 6.372381 CCAATCTTCCATACGATATGCAATCA 59.628 38.462 0.00 0.00 0.00 2.57
331 332 6.595326 TCCAATCTTCCATACGATATGCAATC 59.405 38.462 0.00 0.00 0.00 2.67
332 333 6.372659 GTCCAATCTTCCATACGATATGCAAT 59.627 38.462 0.00 0.00 0.00 3.56
333 334 5.700832 GTCCAATCTTCCATACGATATGCAA 59.299 40.000 0.00 0.00 0.00 4.08
334 335 5.237815 GTCCAATCTTCCATACGATATGCA 58.762 41.667 0.00 0.00 0.00 3.96
335 336 4.327357 CGTCCAATCTTCCATACGATATGC 59.673 45.833 0.00 0.00 32.35 3.14
336 337 5.709966 TCGTCCAATCTTCCATACGATATG 58.290 41.667 0.00 0.00 34.74 1.78
337 338 5.105716 CCTCGTCCAATCTTCCATACGATAT 60.106 44.000 0.00 0.00 38.51 1.63
338 339 4.217767 CCTCGTCCAATCTTCCATACGATA 59.782 45.833 0.00 0.00 38.51 2.92
339 340 3.005897 CCTCGTCCAATCTTCCATACGAT 59.994 47.826 0.00 0.00 38.51 3.73
340 341 2.361119 CCTCGTCCAATCTTCCATACGA 59.639 50.000 0.00 0.00 37.72 3.43
341 342 2.545952 CCCTCGTCCAATCTTCCATACG 60.546 54.545 0.00 0.00 0.00 3.06
342 343 2.224305 CCCCTCGTCCAATCTTCCATAC 60.224 54.545 0.00 0.00 0.00 2.39
343 344 2.047061 CCCCTCGTCCAATCTTCCATA 58.953 52.381 0.00 0.00 0.00 2.74
344 345 0.839946 CCCCTCGTCCAATCTTCCAT 59.160 55.000 0.00 0.00 0.00 3.41
345 346 1.271840 CCCCCTCGTCCAATCTTCCA 61.272 60.000 0.00 0.00 0.00 3.53
346 347 1.272554 ACCCCCTCGTCCAATCTTCC 61.273 60.000 0.00 0.00 0.00 3.46
347 348 0.107654 CACCCCCTCGTCCAATCTTC 60.108 60.000 0.00 0.00 0.00 2.87
348 349 1.562672 CCACCCCCTCGTCCAATCTT 61.563 60.000 0.00 0.00 0.00 2.40
349 350 1.995626 CCACCCCCTCGTCCAATCT 60.996 63.158 0.00 0.00 0.00 2.40
350 351 2.298661 ACCACCCCCTCGTCCAATC 61.299 63.158 0.00 0.00 0.00 2.67
351 352 2.204090 ACCACCCCCTCGTCCAAT 60.204 61.111 0.00 0.00 0.00 3.16
352 353 3.246112 CACCACCCCCTCGTCCAA 61.246 66.667 0.00 0.00 0.00 3.53
356 357 4.585216 TTCCCACCACCCCCTCGT 62.585 66.667 0.00 0.00 0.00 4.18
357 358 3.717294 CTTCCCACCACCCCCTCG 61.717 72.222 0.00 0.00 0.00 4.63
358 359 1.432023 TTTCTTCCCACCACCCCCTC 61.432 60.000 0.00 0.00 0.00 4.30
359 360 1.002242 TTTTCTTCCCACCACCCCCT 61.002 55.000 0.00 0.00 0.00 4.79
360 361 0.541998 CTTTTCTTCCCACCACCCCC 60.542 60.000 0.00 0.00 0.00 5.40
361 362 0.187606 ACTTTTCTTCCCACCACCCC 59.812 55.000 0.00 0.00 0.00 4.95
362 363 1.133606 TCACTTTTCTTCCCACCACCC 60.134 52.381 0.00 0.00 0.00 4.61
363 364 2.358322 TCACTTTTCTTCCCACCACC 57.642 50.000 0.00 0.00 0.00 4.61
364 365 3.445805 TGTTTCACTTTTCTTCCCACCAC 59.554 43.478 0.00 0.00 0.00 4.16
365 366 3.702792 TGTTTCACTTTTCTTCCCACCA 58.297 40.909 0.00 0.00 0.00 4.17
366 367 4.501400 CCATGTTTCACTTTTCTTCCCACC 60.501 45.833 0.00 0.00 0.00 4.61
367 368 4.340950 TCCATGTTTCACTTTTCTTCCCAC 59.659 41.667 0.00 0.00 0.00 4.61
368 369 4.541705 TCCATGTTTCACTTTTCTTCCCA 58.458 39.130 0.00 0.00 0.00 4.37
369 370 5.289595 GTTCCATGTTTCACTTTTCTTCCC 58.710 41.667 0.00 0.00 0.00 3.97
370 371 5.069119 AGGTTCCATGTTTCACTTTTCTTCC 59.931 40.000 0.00 0.00 0.00 3.46
371 372 6.149129 AGGTTCCATGTTTCACTTTTCTTC 57.851 37.500 0.00 0.00 0.00 2.87
372 373 6.544928 AAGGTTCCATGTTTCACTTTTCTT 57.455 33.333 0.00 0.00 0.00 2.52
373 374 6.605594 TGTAAGGTTCCATGTTTCACTTTTCT 59.394 34.615 0.00 0.00 0.00 2.52
374 375 6.801575 TGTAAGGTTCCATGTTTCACTTTTC 58.198 36.000 0.00 0.00 0.00 2.29
375 376 6.783708 TGTAAGGTTCCATGTTTCACTTTT 57.216 33.333 0.00 0.00 0.00 2.27
376 377 6.976934 ATGTAAGGTTCCATGTTTCACTTT 57.023 33.333 0.00 0.00 0.00 2.66
377 378 6.777580 AGAATGTAAGGTTCCATGTTTCACTT 59.222 34.615 0.00 0.00 0.00 3.16
378 379 6.306987 AGAATGTAAGGTTCCATGTTTCACT 58.693 36.000 0.00 0.00 0.00 3.41
379 380 6.575162 AGAATGTAAGGTTCCATGTTTCAC 57.425 37.500 0.00 0.00 0.00 3.18
380 381 7.595819 AAAGAATGTAAGGTTCCATGTTTCA 57.404 32.000 0.00 0.00 0.00 2.69
381 382 8.887036 AAAAAGAATGTAAGGTTCCATGTTTC 57.113 30.769 0.00 0.00 0.00 2.78
383 384 9.981114 CTTAAAAAGAATGTAAGGTTCCATGTT 57.019 29.630 0.00 0.00 0.00 2.71
384 385 9.143155 ACTTAAAAAGAATGTAAGGTTCCATGT 57.857 29.630 0.00 0.00 0.00 3.21
385 386 9.981114 AACTTAAAAAGAATGTAAGGTTCCATG 57.019 29.630 0.00 0.00 0.00 3.66
414 415 9.997172 TCTCTGTCTCTCTCTCTCTCTATATAT 57.003 37.037 0.00 0.00 0.00 0.86
415 416 9.997172 ATCTCTGTCTCTCTCTCTCTCTATATA 57.003 37.037 0.00 0.00 0.00 0.86
416 417 8.907829 ATCTCTGTCTCTCTCTCTCTCTATAT 57.092 38.462 0.00 0.00 0.00 0.86
417 418 9.467796 CTATCTCTGTCTCTCTCTCTCTCTATA 57.532 40.741 0.00 0.00 0.00 1.31
418 419 7.952930 ACTATCTCTGTCTCTCTCTCTCTCTAT 59.047 40.741 0.00 0.00 0.00 1.98
419 420 7.298374 ACTATCTCTGTCTCTCTCTCTCTCTA 58.702 42.308 0.00 0.00 0.00 2.43
420 421 6.139671 ACTATCTCTGTCTCTCTCTCTCTCT 58.860 44.000 0.00 0.00 0.00 3.10
421 422 6.412362 ACTATCTCTGTCTCTCTCTCTCTC 57.588 45.833 0.00 0.00 0.00 3.20
422 423 6.814954 AACTATCTCTGTCTCTCTCTCTCT 57.185 41.667 0.00 0.00 0.00 3.10
423 424 7.679638 GCAAAACTATCTCTGTCTCTCTCTCTC 60.680 44.444 0.00 0.00 0.00 3.20
424 425 6.095440 GCAAAACTATCTCTGTCTCTCTCTCT 59.905 42.308 0.00 0.00 0.00 3.10
425 426 6.265577 GCAAAACTATCTCTGTCTCTCTCTC 58.734 44.000 0.00 0.00 0.00 3.20
426 427 5.127031 GGCAAAACTATCTCTGTCTCTCTCT 59.873 44.000 0.00 0.00 0.00 3.10
427 428 5.348164 GGCAAAACTATCTCTGTCTCTCTC 58.652 45.833 0.00 0.00 0.00 3.20
428 429 4.142271 CGGCAAAACTATCTCTGTCTCTCT 60.142 45.833 0.00 0.00 0.00 3.10
429 430 4.109050 CGGCAAAACTATCTCTGTCTCTC 58.891 47.826 0.00 0.00 0.00 3.20
430 431 3.764434 TCGGCAAAACTATCTCTGTCTCT 59.236 43.478 0.00 0.00 0.00 3.10
431 432 4.111375 TCGGCAAAACTATCTCTGTCTC 57.889 45.455 0.00 0.00 0.00 3.36
432 433 4.744795 ATCGGCAAAACTATCTCTGTCT 57.255 40.909 0.00 0.00 0.00 3.41
433 434 7.011482 ACAATTATCGGCAAAACTATCTCTGTC 59.989 37.037 0.00 0.00 0.00 3.51
434 435 6.823689 ACAATTATCGGCAAAACTATCTCTGT 59.176 34.615 0.00 0.00 0.00 3.41
435 436 7.251704 ACAATTATCGGCAAAACTATCTCTG 57.748 36.000 0.00 0.00 0.00 3.35
436 437 8.993121 CATACAATTATCGGCAAAACTATCTCT 58.007 33.333 0.00 0.00 0.00 3.10
437 438 8.988934 TCATACAATTATCGGCAAAACTATCTC 58.011 33.333 0.00 0.00 0.00 2.75
438 439 8.902540 TCATACAATTATCGGCAAAACTATCT 57.097 30.769 0.00 0.00 0.00 1.98
439 440 8.988934 TCTCATACAATTATCGGCAAAACTATC 58.011 33.333 0.00 0.00 0.00 2.08
440 441 8.902540 TCTCATACAATTATCGGCAAAACTAT 57.097 30.769 0.00 0.00 0.00 2.12
441 442 8.725405 TTCTCATACAATTATCGGCAAAACTA 57.275 30.769 0.00 0.00 0.00 2.24
442 443 7.624360 TTCTCATACAATTATCGGCAAAACT 57.376 32.000 0.00 0.00 0.00 2.66
443 444 7.753132 TGTTTCTCATACAATTATCGGCAAAAC 59.247 33.333 0.00 0.00 0.00 2.43
444 445 7.753132 GTGTTTCTCATACAATTATCGGCAAAA 59.247 33.333 0.00 0.00 0.00 2.44
445 446 7.120579 AGTGTTTCTCATACAATTATCGGCAAA 59.879 33.333 0.00 0.00 0.00 3.68
446 447 6.597672 AGTGTTTCTCATACAATTATCGGCAA 59.402 34.615 0.00 0.00 0.00 4.52
447 448 6.112734 AGTGTTTCTCATACAATTATCGGCA 58.887 36.000 0.00 0.00 0.00 5.69
448 449 6.604735 AGTGTTTCTCATACAATTATCGGC 57.395 37.500 0.00 0.00 0.00 5.54
488 489 4.688511 AACACAGTACAACGCTGAAAAA 57.311 36.364 0.00 0.00 37.40 1.94
489 490 5.798015 TTAACACAGTACAACGCTGAAAA 57.202 34.783 0.00 0.00 37.40 2.29
490 491 5.581479 TCTTTAACACAGTACAACGCTGAAA 59.419 36.000 0.00 0.00 37.40 2.69
491 492 5.110598 TCTTTAACACAGTACAACGCTGAA 58.889 37.500 0.00 0.00 37.40 3.02
492 493 4.684877 TCTTTAACACAGTACAACGCTGA 58.315 39.130 0.00 0.00 37.40 4.26
493 494 5.398176 TTCTTTAACACAGTACAACGCTG 57.602 39.130 0.00 0.00 39.67 5.18
494 495 5.352016 TGTTTCTTTAACACAGTACAACGCT 59.648 36.000 0.00 0.00 41.73 5.07
495 496 5.561993 TGTTTCTTTAACACAGTACAACGC 58.438 37.500 0.00 0.00 41.73 4.84
496 497 8.609478 ATTTGTTTCTTTAACACAGTACAACG 57.391 30.769 0.00 0.00 46.09 4.10
511 512 9.520515 ACATGGTTCTCATACTATTTGTTTCTT 57.479 29.630 0.00 0.00 34.12 2.52
512 513 8.950210 CACATGGTTCTCATACTATTTGTTTCT 58.050 33.333 0.00 0.00 34.12 2.52
513 514 8.946085 TCACATGGTTCTCATACTATTTGTTTC 58.054 33.333 0.00 0.00 34.12 2.78
514 515 8.730680 GTCACATGGTTCTCATACTATTTGTTT 58.269 33.333 0.00 0.00 34.12 2.83
515 516 7.336931 GGTCACATGGTTCTCATACTATTTGTT 59.663 37.037 0.00 0.00 34.12 2.83
516 517 6.823689 GGTCACATGGTTCTCATACTATTTGT 59.176 38.462 0.00 0.00 34.12 2.83
517 518 6.260936 GGGTCACATGGTTCTCATACTATTTG 59.739 42.308 0.00 0.00 34.12 2.32
518 519 6.357367 GGGTCACATGGTTCTCATACTATTT 58.643 40.000 0.00 0.00 34.12 1.40
519 520 5.453339 CGGGTCACATGGTTCTCATACTATT 60.453 44.000 0.00 0.00 34.12 1.73
520 521 4.039245 CGGGTCACATGGTTCTCATACTAT 59.961 45.833 0.00 0.00 34.12 2.12
521 522 3.383505 CGGGTCACATGGTTCTCATACTA 59.616 47.826 0.00 0.00 34.12 1.82
522 523 2.168521 CGGGTCACATGGTTCTCATACT 59.831 50.000 0.00 0.00 34.12 2.12
523 524 2.093658 ACGGGTCACATGGTTCTCATAC 60.094 50.000 0.00 0.00 34.12 2.39
524 525 2.184533 ACGGGTCACATGGTTCTCATA 58.815 47.619 0.00 0.00 34.12 2.15
525 526 0.984230 ACGGGTCACATGGTTCTCAT 59.016 50.000 0.00 0.00 36.31 2.90
526 527 1.634960 TACGGGTCACATGGTTCTCA 58.365 50.000 0.00 0.00 0.00 3.27
527 528 2.550978 CATACGGGTCACATGGTTCTC 58.449 52.381 0.00 0.00 0.00 2.87
528 529 1.209504 CCATACGGGTCACATGGTTCT 59.790 52.381 0.00 0.00 35.49 3.01
529 530 1.663695 CCATACGGGTCACATGGTTC 58.336 55.000 0.00 0.00 35.49 3.62
530 531 3.873781 CCATACGGGTCACATGGTT 57.126 52.632 0.00 0.00 35.49 3.67
541 542 4.699735 TGCATATATTTTCTGCCCATACGG 59.300 41.667 0.00 0.00 35.02 4.02
542 543 5.674569 GCTGCATATATTTTCTGCCCATACG 60.675 44.000 0.00 0.00 35.02 3.06
543 544 5.393461 GGCTGCATATATTTTCTGCCCATAC 60.393 44.000 0.50 0.00 37.52 2.39
544 545 4.706476 GGCTGCATATATTTTCTGCCCATA 59.294 41.667 0.50 0.00 37.52 2.74
545 546 3.512724 GGCTGCATATATTTTCTGCCCAT 59.487 43.478 0.50 0.00 37.52 4.00
546 547 2.892852 GGCTGCATATATTTTCTGCCCA 59.107 45.455 0.50 0.00 37.52 5.36
547 548 3.582714 GGCTGCATATATTTTCTGCCC 57.417 47.619 0.50 0.00 37.52 5.36
548 549 3.160269 AGGGCTGCATATATTTTCTGCC 58.840 45.455 0.50 14.06 41.12 4.85
549 550 7.814264 ATATAGGGCTGCATATATTTTCTGC 57.186 36.000 0.50 0.00 36.45 4.26
551 552 9.759473 ACAAATATAGGGCTGCATATATTTTCT 57.241 29.630 24.53 16.41 40.25 2.52
555 556 9.838339 GAGTACAAATATAGGGCTGCATATATT 57.162 33.333 17.04 17.04 36.56 1.28
556 557 9.218525 AGAGTACAAATATAGGGCTGCATATAT 57.781 33.333 0.50 6.41 0.00 0.86
557 558 8.609617 AGAGTACAAATATAGGGCTGCATATA 57.390 34.615 0.50 4.22 0.00 0.86
558 559 7.502060 AGAGTACAAATATAGGGCTGCATAT 57.498 36.000 0.50 1.90 0.00 1.78
559 560 6.935240 AGAGTACAAATATAGGGCTGCATA 57.065 37.500 0.50 0.00 0.00 3.14
560 561 5.832539 AGAGTACAAATATAGGGCTGCAT 57.167 39.130 0.50 0.00 0.00 3.96
561 562 5.104527 ACAAGAGTACAAATATAGGGCTGCA 60.105 40.000 0.50 0.00 0.00 4.41
562 563 5.368989 ACAAGAGTACAAATATAGGGCTGC 58.631 41.667 0.00 0.00 0.00 5.25
563 564 6.260936 CCAACAAGAGTACAAATATAGGGCTG 59.739 42.308 0.00 0.00 0.00 4.85
564 565 6.157994 TCCAACAAGAGTACAAATATAGGGCT 59.842 38.462 0.00 0.00 0.00 5.19
565 566 6.354130 TCCAACAAGAGTACAAATATAGGGC 58.646 40.000 0.00 0.00 0.00 5.19
566 567 8.980481 ATTCCAACAAGAGTACAAATATAGGG 57.020 34.615 0.00 0.00 0.00 3.53
636 637 6.496338 AGATAGTGTTTGGGATTTTCGTTC 57.504 37.500 0.00 0.00 0.00 3.95
684 689 2.035449 GCAACTCCAAACCCAAGTTACC 59.965 50.000 0.00 0.00 34.19 2.85
712 717 1.722011 CGAAGAGCCCACGTTACATT 58.278 50.000 0.00 0.00 0.00 2.71
760 765 3.134804 CCTCCCGTTAATTCATCCTGACT 59.865 47.826 0.00 0.00 0.00 3.41
882 887 0.109272 AGCTCCATGTGTACGTGTCG 60.109 55.000 0.00 0.00 0.00 4.35
891 896 3.565482 ACGCCAATTTATAGCTCCATGTG 59.435 43.478 0.00 0.00 0.00 3.21
892 897 3.815401 GACGCCAATTTATAGCTCCATGT 59.185 43.478 0.00 0.00 0.00 3.21
908 913 1.300620 CGTTGAGGAGTTGACGCCA 60.301 57.895 6.68 0.00 38.37 5.69
935 940 1.020333 TGTATGGCGTTAACGTGGGC 61.020 55.000 27.28 13.34 42.22 5.36
938 943 0.372334 GGCTGTATGGCGTTAACGTG 59.628 55.000 27.28 11.11 42.22 4.49
948 953 2.684881 GGTGTTTGAGATGGCTGTATGG 59.315 50.000 0.00 0.00 0.00 2.74
949 954 2.352651 CGGTGTTTGAGATGGCTGTATG 59.647 50.000 0.00 0.00 0.00 2.39
950 955 2.632377 CGGTGTTTGAGATGGCTGTAT 58.368 47.619 0.00 0.00 0.00 2.29
955 960 2.038387 ATACCGGTGTTTGAGATGGC 57.962 50.000 19.93 0.00 0.00 4.40
967 972 1.006571 CGCGCCTTGATATACCGGT 60.007 57.895 13.98 13.98 0.00 5.28
973 978 2.661866 GTCGGCGCGCCTTGATAT 60.662 61.111 43.60 0.00 0.00 1.63
989 994 2.246739 CGCGCCATGGATTGATCGT 61.247 57.895 18.40 0.00 0.00 3.73
990 995 2.552768 CGCGCCATGGATTGATCG 59.447 61.111 18.40 9.54 0.00 3.69
991 996 2.949106 CCGCGCCATGGATTGATC 59.051 61.111 18.40 0.00 0.00 2.92
992 997 3.289834 GCCGCGCCATGGATTGAT 61.290 61.111 18.40 0.00 0.00 2.57
993 998 4.792804 TGCCGCGCCATGGATTGA 62.793 61.111 18.40 0.00 0.00 2.57
1006 1011 0.389948 AAAAGACCTACGAGCTGCCG 60.390 55.000 0.00 8.60 0.00 5.69
1014 1019 0.716108 CAGCTGCGAAAAGACCTACG 59.284 55.000 0.00 0.00 0.00 3.51
1015 1020 0.444260 GCAGCTGCGAAAAGACCTAC 59.556 55.000 25.23 0.00 0.00 3.18
1027 1032 4.368543 GGCCACCAAAGCAGCTGC 62.369 66.667 31.53 31.53 42.49 5.25
1074 1079 2.665185 GCGAAGTTGGACGGCAGT 60.665 61.111 0.00 0.00 0.00 4.40
1113 1118 0.101939 CGTCCCGCTTCCCTAGTAAC 59.898 60.000 0.00 0.00 0.00 2.50
1246 1251 6.166982 GCAGAGATTAACTAACTGAAGGTGT 58.833 40.000 0.00 0.00 0.00 4.16
1333 1345 3.232213 AGTAGTCGCACACTTACATGG 57.768 47.619 0.00 0.00 36.43 3.66
1439 1451 0.389817 CAACATCGGAGAGGACGCAA 60.390 55.000 0.00 0.00 43.16 4.85
1456 1468 2.025131 TGGGCATTGACATGGAGATCAA 60.025 45.455 0.00 0.00 39.09 2.57
1619 1631 2.649034 GTCTCGTCGTCCAAGCCA 59.351 61.111 0.00 0.00 0.00 4.75
1793 1805 0.389296 CACCGTAGTTGTGGATGCGA 60.389 55.000 0.00 0.00 0.00 5.10
1907 1922 8.989131 ACCCTAAGCTTGTTAATATAGTCAGAA 58.011 33.333 9.86 0.00 0.00 3.02
2167 2221 1.133025 GTCTGGAATTTGGATGTGCCG 59.867 52.381 0.00 0.00 40.66 5.69
2175 2229 1.539827 GGGTCGTTGTCTGGAATTTGG 59.460 52.381 0.00 0.00 0.00 3.28
2176 2230 2.504367 AGGGTCGTTGTCTGGAATTTG 58.496 47.619 0.00 0.00 0.00 2.32
2177 2231 2.951229 AGGGTCGTTGTCTGGAATTT 57.049 45.000 0.00 0.00 0.00 1.82
2178 2232 2.951229 AAGGGTCGTTGTCTGGAATT 57.049 45.000 0.00 0.00 0.00 2.17
2179 2233 2.904434 ACTAAGGGTCGTTGTCTGGAAT 59.096 45.455 0.00 0.00 0.00 3.01
2202 2543 1.867363 AGGAAGAGAGTTGCCCGTAT 58.133 50.000 0.00 0.00 0.00 3.06
2205 2546 0.175989 GGTAGGAAGAGAGTTGCCCG 59.824 60.000 0.00 0.00 0.00 6.13
2210 2551 1.629043 TGCACGGTAGGAAGAGAGTT 58.371 50.000 0.00 0.00 0.00 3.01
2225 2566 7.718272 TCGTAAAATATTACTGGGTATGCAC 57.282 36.000 0.00 0.00 39.42 4.57
2233 2574 8.943002 AGTTCCACTTTCGTAAAATATTACTGG 58.057 33.333 0.00 0.00 39.42 4.00
2373 2816 8.145122 TCAAGTTTATGAAAAATACCCACCAAC 58.855 33.333 0.00 0.00 0.00 3.77
2466 2909 6.318648 TGATCAAGTTAACACTATTGGATGGC 59.681 38.462 8.61 0.00 30.68 4.40
2478 2921 9.442047 AAACCAATTTTGTTGATCAAGTTAACA 57.558 25.926 8.80 0.02 37.35 2.41
2490 2933 9.623350 AAAGACATTTGAAAACCAATTTTGTTG 57.377 25.926 0.00 0.00 38.17 3.33
2513 2956 8.665685 ACGCCAATTATTAGAGTAGACAAAAAG 58.334 33.333 0.00 0.00 0.00 2.27
2601 4248 1.065126 AGGACTGCAGGAGGTAATTGC 60.065 52.381 19.93 0.00 38.30 3.56
2674 4324 1.696884 TCTTCCATATATGTGCGGCCA 59.303 47.619 11.73 0.00 0.00 5.36
2675 4325 2.028112 TCTCTTCCATATATGTGCGGCC 60.028 50.000 11.73 0.00 0.00 6.13
2730 4380 9.243105 CCCACTTGATTTTCCTTATTTCTCTAA 57.757 33.333 0.00 0.00 0.00 2.10
2731 4381 8.611257 TCCCACTTGATTTTCCTTATTTCTCTA 58.389 33.333 0.00 0.00 0.00 2.43
2732 4382 7.470192 TCCCACTTGATTTTCCTTATTTCTCT 58.530 34.615 0.00 0.00 0.00 3.10
2733 4383 7.703058 TCCCACTTGATTTTCCTTATTTCTC 57.297 36.000 0.00 0.00 0.00 2.87
2734 4384 7.310052 GCTTCCCACTTGATTTTCCTTATTTCT 60.310 37.037 0.00 0.00 0.00 2.52
2735 4385 6.813649 GCTTCCCACTTGATTTTCCTTATTTC 59.186 38.462 0.00 0.00 0.00 2.17
2736 4386 6.269769 TGCTTCCCACTTGATTTTCCTTATTT 59.730 34.615 0.00 0.00 0.00 1.40
2737 4387 5.779771 TGCTTCCCACTTGATTTTCCTTATT 59.220 36.000 0.00 0.00 0.00 1.40
2738 4388 5.185828 GTGCTTCCCACTTGATTTTCCTTAT 59.814 40.000 0.00 0.00 41.35 1.73
2739 4389 4.522789 GTGCTTCCCACTTGATTTTCCTTA 59.477 41.667 0.00 0.00 41.35 2.69
2740 4390 3.321968 GTGCTTCCCACTTGATTTTCCTT 59.678 43.478 0.00 0.00 41.35 3.36
2741 4391 2.893489 GTGCTTCCCACTTGATTTTCCT 59.107 45.455 0.00 0.00 41.35 3.36
2742 4392 2.627699 TGTGCTTCCCACTTGATTTTCC 59.372 45.455 0.00 0.00 44.92 3.13
2743 4393 3.569701 TCTGTGCTTCCCACTTGATTTTC 59.430 43.478 0.00 0.00 44.92 2.29
2744 4394 3.565307 TCTGTGCTTCCCACTTGATTTT 58.435 40.909 0.00 0.00 44.92 1.82
2745 4395 3.228188 TCTGTGCTTCCCACTTGATTT 57.772 42.857 0.00 0.00 44.92 2.17
2746 4396 2.957402 TCTGTGCTTCCCACTTGATT 57.043 45.000 0.00 0.00 44.92 2.57
2747 4397 2.957402 TTCTGTGCTTCCCACTTGAT 57.043 45.000 0.00 0.00 44.92 2.57
2748 4398 2.575532 CTTTCTGTGCTTCCCACTTGA 58.424 47.619 0.00 0.00 44.92 3.02
2749 4399 1.610522 CCTTTCTGTGCTTCCCACTTG 59.389 52.381 0.00 0.00 44.92 3.16
2750 4400 1.986882 CCTTTCTGTGCTTCCCACTT 58.013 50.000 0.00 0.00 44.92 3.16
2751 4401 0.538287 GCCTTTCTGTGCTTCCCACT 60.538 55.000 0.00 0.00 44.92 4.00
2752 4402 1.527433 GGCCTTTCTGTGCTTCCCAC 61.527 60.000 0.00 0.00 44.90 4.61
2753 4403 1.228552 GGCCTTTCTGTGCTTCCCA 60.229 57.895 0.00 0.00 0.00 4.37
2798 4448 0.320334 CATACCAGTGTGTGCGGTCA 60.320 55.000 0.00 0.00 34.12 4.02
2812 4462 2.100916 ACCTCATACGACAGTGCATACC 59.899 50.000 0.00 0.00 0.00 2.73
2848 4499 2.477189 CGATATTTGTTGGGTTGGACGC 60.477 50.000 0.00 0.00 0.00 5.19
2859 4510 3.426615 TGGGCCTTTCACGATATTTGTT 58.573 40.909 4.53 0.00 0.00 2.83
2938 4589 6.642733 ATGGACTATCCTCTGGAAGAAAAA 57.357 37.500 0.00 0.00 46.34 1.94
2939 4590 6.672218 TGTATGGACTATCCTCTGGAAGAAAA 59.328 38.462 0.00 0.00 46.34 2.29
2940 4591 6.202331 TGTATGGACTATCCTCTGGAAGAAA 58.798 40.000 0.00 0.00 46.34 2.52
2941 4592 5.777449 TGTATGGACTATCCTCTGGAAGAA 58.223 41.667 0.00 0.00 46.34 2.52
2942 4593 5.389520 CTGTATGGACTATCCTCTGGAAGA 58.610 45.833 0.00 0.00 43.34 2.87
2943 4594 4.021544 GCTGTATGGACTATCCTCTGGAAG 60.022 50.000 0.00 0.00 37.46 3.46
2944 4595 3.898123 GCTGTATGGACTATCCTCTGGAA 59.102 47.826 0.00 0.00 37.46 3.53
2945 4596 3.117131 TGCTGTATGGACTATCCTCTGGA 60.117 47.826 0.00 0.00 37.46 3.86
2946 4597 3.234353 TGCTGTATGGACTATCCTCTGG 58.766 50.000 0.00 0.00 37.46 3.86
2947 4598 5.480642 AATGCTGTATGGACTATCCTCTG 57.519 43.478 0.00 0.00 37.46 3.35
2948 4599 5.221803 CCAAATGCTGTATGGACTATCCTCT 60.222 44.000 0.00 0.00 37.46 3.69
2949 4600 4.999950 CCAAATGCTGTATGGACTATCCTC 59.000 45.833 0.00 0.00 37.46 3.71
2950 4601 4.747931 GCCAAATGCTGTATGGACTATCCT 60.748 45.833 0.00 0.00 35.52 3.24
2951 4602 3.503748 GCCAAATGCTGTATGGACTATCC 59.496 47.826 0.00 0.00 36.27 2.59
2952 4603 4.136796 TGCCAAATGCTGTATGGACTATC 58.863 43.478 0.00 0.00 42.00 2.08
2953 4604 4.139786 CTGCCAAATGCTGTATGGACTAT 58.860 43.478 0.00 0.00 42.00 2.12
2954 4605 3.199727 TCTGCCAAATGCTGTATGGACTA 59.800 43.478 0.00 0.00 42.00 2.59
2955 4606 2.025981 TCTGCCAAATGCTGTATGGACT 60.026 45.455 0.00 0.00 42.00 3.85
2956 4607 2.357009 CTCTGCCAAATGCTGTATGGAC 59.643 50.000 0.00 0.00 42.00 4.02
2957 4608 2.239402 TCTCTGCCAAATGCTGTATGGA 59.761 45.455 0.00 0.00 42.00 3.41
2958 4609 2.646930 TCTCTGCCAAATGCTGTATGG 58.353 47.619 0.00 0.00 42.00 2.74
2959 4610 4.913335 ATTCTCTGCCAAATGCTGTATG 57.087 40.909 0.00 0.00 42.00 2.39
2960 4611 5.439721 TGTATTCTCTGCCAAATGCTGTAT 58.560 37.500 0.00 0.00 42.00 2.29
2961 4612 4.842574 TGTATTCTCTGCCAAATGCTGTA 58.157 39.130 0.00 0.00 42.00 2.74
2962 4613 3.689347 TGTATTCTCTGCCAAATGCTGT 58.311 40.909 0.00 0.00 42.00 4.40
2963 4614 4.707030 TTGTATTCTCTGCCAAATGCTG 57.293 40.909 0.00 0.00 42.00 4.41
2964 4615 5.655532 AGAATTGTATTCTCTGCCAAATGCT 59.344 36.000 0.00 0.00 42.00 3.79
2965 4616 5.899299 AGAATTGTATTCTCTGCCAAATGC 58.101 37.500 0.00 0.00 41.77 3.56
2966 4617 8.181487 CAAAGAATTGTATTCTCTGCCAAATG 57.819 34.615 2.65 0.00 0.00 2.32
2990 4641 9.781834 CGCAAAAACATCTTATATTTAGGAACA 57.218 29.630 0.00 0.00 0.00 3.18
2991 4642 9.997482 TCGCAAAAACATCTTATATTTAGGAAC 57.003 29.630 0.00 0.00 0.00 3.62
2993 4644 9.997482 GTTCGCAAAAACATCTTATATTTAGGA 57.003 29.630 0.00 0.00 0.00 2.94
2994 4645 9.233232 GGTTCGCAAAAACATCTTATATTTAGG 57.767 33.333 0.00 0.00 0.00 2.69
2995 4646 9.781834 TGGTTCGCAAAAACATCTTATATTTAG 57.218 29.630 0.00 0.00 0.00 1.85
2997 4648 9.651913 ATTGGTTCGCAAAAACATCTTATATTT 57.348 25.926 0.00 0.00 0.00 1.40
2998 4649 9.301153 GATTGGTTCGCAAAAACATCTTATATT 57.699 29.630 0.00 0.00 0.00 1.28
2999 4650 8.686334 AGATTGGTTCGCAAAAACATCTTATAT 58.314 29.630 0.00 0.00 0.00 0.86
3000 4651 7.967854 CAGATTGGTTCGCAAAAACATCTTATA 59.032 33.333 0.00 0.00 0.00 0.98
3001 4652 6.808212 CAGATTGGTTCGCAAAAACATCTTAT 59.192 34.615 0.00 0.00 0.00 1.73
3002 4653 6.148948 CAGATTGGTTCGCAAAAACATCTTA 58.851 36.000 0.00 0.00 0.00 2.10
3003 4654 4.984161 CAGATTGGTTCGCAAAAACATCTT 59.016 37.500 0.00 0.00 0.00 2.40
3004 4655 4.037923 ACAGATTGGTTCGCAAAAACATCT 59.962 37.500 0.00 0.00 0.00 2.90
3005 4656 4.148696 CACAGATTGGTTCGCAAAAACATC 59.851 41.667 0.00 0.00 0.00 3.06
3006 4657 4.050553 CACAGATTGGTTCGCAAAAACAT 58.949 39.130 0.00 0.00 0.00 2.71
3007 4658 3.443037 CACAGATTGGTTCGCAAAAACA 58.557 40.909 0.00 0.00 0.00 2.83
3008 4659 2.794350 CCACAGATTGGTTCGCAAAAAC 59.206 45.455 0.00 0.00 41.10 2.43
3009 4660 3.090952 CCACAGATTGGTTCGCAAAAA 57.909 42.857 0.00 0.00 41.10 1.94
3010 4661 2.791383 CCACAGATTGGTTCGCAAAA 57.209 45.000 0.00 0.00 41.10 2.44
3020 4671 4.588899 TCTAACCATCCAACCACAGATTG 58.411 43.478 0.00 0.00 0.00 2.67
3021 4672 4.324563 CCTCTAACCATCCAACCACAGATT 60.325 45.833 0.00 0.00 0.00 2.40
3022 4673 3.200825 CCTCTAACCATCCAACCACAGAT 59.799 47.826 0.00 0.00 0.00 2.90
3023 4674 2.571653 CCTCTAACCATCCAACCACAGA 59.428 50.000 0.00 0.00 0.00 3.41
3024 4675 2.356125 CCCTCTAACCATCCAACCACAG 60.356 54.545 0.00 0.00 0.00 3.66
3025 4676 1.633432 CCCTCTAACCATCCAACCACA 59.367 52.381 0.00 0.00 0.00 4.17
3026 4677 1.913419 TCCCTCTAACCATCCAACCAC 59.087 52.381 0.00 0.00 0.00 4.16
3027 4678 1.913419 GTCCCTCTAACCATCCAACCA 59.087 52.381 0.00 0.00 0.00 3.67
3028 4679 1.913419 TGTCCCTCTAACCATCCAACC 59.087 52.381 0.00 0.00 0.00 3.77
3029 4680 2.572104 ACTGTCCCTCTAACCATCCAAC 59.428 50.000 0.00 0.00 0.00 3.77
3030 4681 2.571653 CACTGTCCCTCTAACCATCCAA 59.428 50.000 0.00 0.00 0.00 3.53
3031 4682 2.187958 CACTGTCCCTCTAACCATCCA 58.812 52.381 0.00 0.00 0.00 3.41
3032 4683 1.134371 GCACTGTCCCTCTAACCATCC 60.134 57.143 0.00 0.00 0.00 3.51
3033 4684 1.834263 AGCACTGTCCCTCTAACCATC 59.166 52.381 0.00 0.00 0.00 3.51
3034 4685 1.958288 AGCACTGTCCCTCTAACCAT 58.042 50.000 0.00 0.00 0.00 3.55
3035 4686 2.615986 TAGCACTGTCCCTCTAACCA 57.384 50.000 0.00 0.00 0.00 3.67
3036 4687 3.301274 AGATAGCACTGTCCCTCTAACC 58.699 50.000 0.00 0.00 0.00 2.85
3037 4688 4.402793 TGAAGATAGCACTGTCCCTCTAAC 59.597 45.833 0.00 0.00 0.00 2.34
3038 4689 4.610333 TGAAGATAGCACTGTCCCTCTAA 58.390 43.478 0.00 0.00 0.00 2.10
3039 4690 4.211125 CTGAAGATAGCACTGTCCCTCTA 58.789 47.826 0.00 0.00 0.00 2.43
3040 4691 3.030291 CTGAAGATAGCACTGTCCCTCT 58.970 50.000 0.00 0.00 0.00 3.69
3041 4692 2.482839 GCTGAAGATAGCACTGTCCCTC 60.483 54.545 0.00 0.00 43.17 4.30
3042 4693 1.484240 GCTGAAGATAGCACTGTCCCT 59.516 52.381 0.00 0.00 43.17 4.20
3043 4694 1.474143 GGCTGAAGATAGCACTGTCCC 60.474 57.143 0.00 0.00 45.46 4.46
3044 4695 1.946745 GGCTGAAGATAGCACTGTCC 58.053 55.000 0.00 0.00 45.46 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.