Multiple sequence alignment - TraesCS3D01G525600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G525600 chr3D 100.000 3188 0 0 1 3188 604839006 604835819 0.000000e+00 5888.0
1 TraesCS3D01G525600 chr3D 92.931 2334 127 18 868 3185 604800299 604797988 0.000000e+00 3362.0
2 TraesCS3D01G525600 chr3D 90.517 232 14 4 653 876 604800703 604800472 1.860000e-77 300.0
3 TraesCS3D01G525600 chr3D 76.592 581 102 27 1015 1576 604817100 604816535 4.020000e-74 289.0
4 TraesCS3D01G525600 chr3D 82.558 86 14 1 2779 2864 604815509 604815425 1.230000e-09 75.0
5 TraesCS3D01G525600 chr3A 92.996 2470 117 18 653 3099 735606814 735604378 0.000000e+00 3552.0
6 TraesCS3D01G525600 chr3A 90.483 704 47 11 1365 2049 736137903 736138605 0.000000e+00 911.0
7 TraesCS3D01G525600 chr3A 79.416 1268 207 29 1013 2272 735717089 735715868 0.000000e+00 846.0
8 TraesCS3D01G525600 chr3A 85.279 788 86 19 2044 2807 736142851 736143632 0.000000e+00 785.0
9 TraesCS3D01G525600 chr3A 86.772 378 45 4 877 1253 736137530 736137903 1.770000e-112 416.0
10 TraesCS3D01G525600 chr3B 91.251 1463 101 7 1733 3188 812508950 812507508 0.000000e+00 1967.0
11 TraesCS3D01G525600 chr3B 93.779 1093 55 7 653 1739 812517960 812516875 0.000000e+00 1629.0
12 TraesCS3D01G525600 chr3B 91.368 1089 68 12 1175 2239 812909202 812910288 0.000000e+00 1467.0
13 TraesCS3D01G525600 chr3B 75.077 1292 253 48 1015 2282 736409969 736411215 3.620000e-149 538.0
14 TraesCS3D01G525600 chr3B 77.003 387 60 17 1861 2238 707573164 707573530 9.020000e-46 195.0
15 TraesCS3D01G525600 chr1D 98.305 649 10 1 1 649 46385051 46385698 0.000000e+00 1136.0
16 TraesCS3D01G525600 chr1D 97.381 649 15 2 1 649 450513277 450512631 0.000000e+00 1103.0
17 TraesCS3D01G525600 chr1D 87.324 71 9 0 577 647 390688568 390688638 7.330000e-12 82.4
18 TraesCS3D01G525600 chr1B 90.840 655 51 6 1 650 197856119 197856769 0.000000e+00 869.0
19 TraesCS3D01G525600 chr4A 90.642 374 33 2 274 647 461230547 461230918 2.210000e-136 496.0
20 TraesCS3D01G525600 chrUn 80.247 405 72 7 1016 1415 293471022 293470621 6.690000e-77 298.0
21 TraesCS3D01G525600 chrUn 80.247 405 72 7 1016 1415 308926113 308925712 6.690000e-77 298.0
22 TraesCS3D01G525600 chrUn 94.595 37 2 0 1542 1578 293470517 293470481 1.240000e-04 58.4
23 TraesCS3D01G525600 chrUn 94.595 37 2 0 1542 1578 308925608 308925572 1.240000e-04 58.4
24 TraesCS3D01G525600 chr7D 92.453 53 2 2 599 651 554371383 554371433 1.230000e-09 75.0
25 TraesCS3D01G525600 chr6B 95.652 46 2 0 602 647 672131198 672131243 1.230000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G525600 chr3D 604835819 604839006 3187 True 5888.0 5888 100.0000 1 3188 1 chr3D.!!$R1 3187
1 TraesCS3D01G525600 chr3D 604797988 604800703 2715 True 1831.0 3362 91.7240 653 3185 2 chr3D.!!$R2 2532
2 TraesCS3D01G525600 chr3A 735604378 735606814 2436 True 3552.0 3552 92.9960 653 3099 1 chr3A.!!$R1 2446
3 TraesCS3D01G525600 chr3A 735715868 735717089 1221 True 846.0 846 79.4160 1013 2272 1 chr3A.!!$R2 1259
4 TraesCS3D01G525600 chr3A 736142851 736143632 781 False 785.0 785 85.2790 2044 2807 1 chr3A.!!$F1 763
5 TraesCS3D01G525600 chr3A 736137530 736138605 1075 False 663.5 911 88.6275 877 2049 2 chr3A.!!$F2 1172
6 TraesCS3D01G525600 chr3B 812507508 812508950 1442 True 1967.0 1967 91.2510 1733 3188 1 chr3B.!!$R1 1455
7 TraesCS3D01G525600 chr3B 812516875 812517960 1085 True 1629.0 1629 93.7790 653 1739 1 chr3B.!!$R2 1086
8 TraesCS3D01G525600 chr3B 812909202 812910288 1086 False 1467.0 1467 91.3680 1175 2239 1 chr3B.!!$F3 1064
9 TraesCS3D01G525600 chr3B 736409969 736411215 1246 False 538.0 538 75.0770 1015 2282 1 chr3B.!!$F2 1267
10 TraesCS3D01G525600 chr1D 46385051 46385698 647 False 1136.0 1136 98.3050 1 649 1 chr1D.!!$F1 648
11 TraesCS3D01G525600 chr1D 450512631 450513277 646 True 1103.0 1103 97.3810 1 649 1 chr1D.!!$R1 648
12 TraesCS3D01G525600 chr1B 197856119 197856769 650 False 869.0 869 90.8400 1 650 1 chr1B.!!$F1 649

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
525 529 0.038310 TGCAGAGGAGAGTCGAGGAA 59.962 55.0 0.00 0.0 0.00 3.36 F
577 581 0.249447 TGATCTAACGGCCAGATGCG 60.249 55.0 8.73 0.0 42.61 4.73 F
1384 1814 0.389391 CACCCGACAACTCACAGAGT 59.611 55.0 0.00 0.0 45.64 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1665 2117 1.003580 GGGTGATCTGCTCCAGTTTCA 59.996 52.381 0.0 0.0 32.61 2.69 R
1924 2399 1.809547 CATACCAATGAACACCACGCA 59.190 47.619 0.0 0.0 34.84 5.24 R
2856 3392 1.873591 GGTGCGTTTGTGATGAGAACT 59.126 47.619 0.0 0.0 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
146 150 0.958382 TTTGCTAGCACCCGCGATTT 60.958 50.000 19.17 0.00 45.49 2.17
228 232 1.490693 GGTGATGCATGCCTACGACG 61.491 60.000 16.68 0.00 0.00 5.12
229 233 0.527600 GTGATGCATGCCTACGACGA 60.528 55.000 16.68 0.00 0.00 4.20
230 234 0.527600 TGATGCATGCCTACGACGAC 60.528 55.000 16.68 0.00 0.00 4.34
231 235 1.540607 GATGCATGCCTACGACGACG 61.541 60.000 16.68 5.58 45.75 5.12
232 236 2.000215 ATGCATGCCTACGACGACGA 62.000 55.000 16.68 0.00 42.66 4.20
233 237 1.939785 GCATGCCTACGACGACGAG 60.940 63.158 15.32 6.99 42.66 4.18
234 238 1.939785 CATGCCTACGACGACGAGC 60.940 63.158 15.32 13.57 42.66 5.03
236 240 3.857854 GCCTACGACGACGAGCGA 61.858 66.667 15.32 0.00 44.57 4.93
237 241 2.320383 CCTACGACGACGAGCGAG 59.680 66.667 15.32 5.43 44.57 5.03
238 242 2.320383 CTACGACGACGAGCGAGG 59.680 66.667 15.32 8.74 44.57 4.63
239 243 3.152937 CTACGACGACGAGCGAGGG 62.153 68.421 15.32 6.87 44.57 4.30
240 244 3.647649 TACGACGACGAGCGAGGGA 62.648 63.158 15.32 2.26 44.57 4.20
241 245 4.517703 CGACGACGAGCGAGGGAC 62.518 72.222 0.00 0.00 44.57 4.46
242 246 4.517703 GACGACGAGCGAGGGACG 62.518 72.222 0.00 0.00 44.57 4.79
261 265 3.430862 CGGTGGCCGTGACAATGG 61.431 66.667 0.00 0.00 42.73 3.16
262 266 3.061848 GGTGGCCGTGACAATGGG 61.062 66.667 0.00 0.00 32.47 4.00
263 267 2.033448 GTGGCCGTGACAATGGGA 59.967 61.111 0.00 0.00 32.47 4.37
264 268 2.033448 TGGCCGTGACAATGGGAC 59.967 61.111 0.00 0.00 32.47 4.46
265 269 3.124921 GGCCGTGACAATGGGACG 61.125 66.667 0.00 0.14 32.47 4.79
266 270 3.799755 GCCGTGACAATGGGACGC 61.800 66.667 1.44 0.00 32.47 5.19
267 271 2.047274 CCGTGACAATGGGACGCT 60.047 61.111 1.44 0.00 0.00 5.07
268 272 2.390599 CCGTGACAATGGGACGCTG 61.391 63.158 1.44 0.00 0.00 5.18
269 273 2.870372 GTGACAATGGGACGCTGC 59.130 61.111 0.00 0.00 0.00 5.25
270 274 1.965930 GTGACAATGGGACGCTGCA 60.966 57.895 0.00 0.00 0.00 4.41
271 275 1.228094 TGACAATGGGACGCTGCAA 60.228 52.632 0.00 0.00 0.00 4.08
272 276 0.608856 TGACAATGGGACGCTGCAAT 60.609 50.000 0.00 0.00 0.00 3.56
273 277 0.099436 GACAATGGGACGCTGCAATC 59.901 55.000 0.00 0.00 0.00 2.67
274 278 0.608856 ACAATGGGACGCTGCAATCA 60.609 50.000 0.00 0.00 0.00 2.57
275 279 0.179156 CAATGGGACGCTGCAATCAC 60.179 55.000 0.00 0.00 0.00 3.06
276 280 1.647545 AATGGGACGCTGCAATCACG 61.648 55.000 0.00 0.00 0.00 4.35
277 281 3.499737 GGGACGCTGCAATCACGG 61.500 66.667 0.00 0.00 0.00 4.94
278 282 2.742372 GGACGCTGCAATCACGGT 60.742 61.111 0.00 0.00 0.00 4.83
279 283 2.476051 GACGCTGCAATCACGGTG 59.524 61.111 0.56 0.56 0.00 4.94
280 284 2.027073 GACGCTGCAATCACGGTGA 61.027 57.895 14.01 14.01 0.00 4.02
281 285 2.227968 GACGCTGCAATCACGGTGAC 62.228 60.000 13.92 1.41 0.00 3.67
282 286 2.870372 GCTGCAATCACGGTGACC 59.130 61.111 13.92 5.71 0.00 4.02
292 296 2.795973 CGGTGACCGTATGCTCGA 59.204 61.111 17.28 0.00 42.73 4.04
293 297 1.138036 CGGTGACCGTATGCTCGAA 59.862 57.895 17.28 0.00 42.73 3.71
294 298 1.138047 CGGTGACCGTATGCTCGAAC 61.138 60.000 17.28 0.00 42.73 3.95
295 299 0.804933 GGTGACCGTATGCTCGAACC 60.805 60.000 0.00 0.00 0.00 3.62
296 300 0.108992 GTGACCGTATGCTCGAACCA 60.109 55.000 0.00 0.00 0.00 3.67
297 301 0.172578 TGACCGTATGCTCGAACCAG 59.827 55.000 0.00 0.00 0.00 4.00
298 302 1.146358 GACCGTATGCTCGAACCAGC 61.146 60.000 0.00 0.00 40.13 4.85
299 303 2.230940 CCGTATGCTCGAACCAGCG 61.231 63.158 0.00 0.00 42.92 5.18
300 304 2.230940 CGTATGCTCGAACCAGCGG 61.231 63.158 0.00 0.00 42.92 5.52
301 305 1.153628 GTATGCTCGAACCAGCGGT 60.154 57.895 0.00 0.00 42.92 5.68
302 306 1.153647 TATGCTCGAACCAGCGGTG 60.154 57.895 7.86 7.86 42.92 4.94
308 312 2.811317 GAACCAGCGGTGCGAGAG 60.811 66.667 9.63 0.00 35.34 3.20
320 324 4.483711 CGAGAGCTGCAATCGTCA 57.516 55.556 15.56 0.00 0.00 4.35
321 325 2.741930 CGAGAGCTGCAATCGTCAA 58.258 52.632 15.56 0.00 0.00 3.18
322 326 1.284657 CGAGAGCTGCAATCGTCAAT 58.715 50.000 15.56 0.00 0.00 2.57
323 327 1.005242 CGAGAGCTGCAATCGTCAATG 60.005 52.381 15.56 0.00 0.00 2.82
324 328 1.329906 GAGAGCTGCAATCGTCAATGG 59.670 52.381 1.02 0.00 0.00 3.16
325 329 1.065926 AGAGCTGCAATCGTCAATGGA 60.066 47.619 1.02 0.00 0.00 3.41
326 330 1.739466 GAGCTGCAATCGTCAATGGAA 59.261 47.619 1.02 0.00 0.00 3.53
327 331 1.741706 AGCTGCAATCGTCAATGGAAG 59.258 47.619 1.02 0.00 0.00 3.46
328 332 1.202222 GCTGCAATCGTCAATGGAAGG 60.202 52.381 0.00 0.00 0.00 3.46
329 333 0.810648 TGCAATCGTCAATGGAAGGC 59.189 50.000 0.00 0.00 0.00 4.35
330 334 0.810648 GCAATCGTCAATGGAAGGCA 59.189 50.000 0.00 0.00 0.00 4.75
331 335 1.202222 GCAATCGTCAATGGAAGGCAG 60.202 52.381 0.00 0.00 0.00 4.85
332 336 2.086869 CAATCGTCAATGGAAGGCAGT 58.913 47.619 0.00 0.00 0.00 4.40
333 337 2.029838 ATCGTCAATGGAAGGCAGTC 57.970 50.000 0.00 0.00 0.00 3.51
334 338 0.976641 TCGTCAATGGAAGGCAGTCT 59.023 50.000 0.00 0.00 0.00 3.24
335 339 1.081892 CGTCAATGGAAGGCAGTCTG 58.918 55.000 0.00 0.00 0.00 3.51
336 340 1.457346 GTCAATGGAAGGCAGTCTGG 58.543 55.000 1.14 0.00 0.00 3.86
337 341 1.003580 GTCAATGGAAGGCAGTCTGGA 59.996 52.381 1.14 0.00 0.00 3.86
338 342 1.280133 TCAATGGAAGGCAGTCTGGAG 59.720 52.381 1.14 0.00 0.00 3.86
339 343 0.622665 AATGGAAGGCAGTCTGGAGG 59.377 55.000 1.14 0.00 0.00 4.30
340 344 1.277580 ATGGAAGGCAGTCTGGAGGG 61.278 60.000 1.14 0.00 0.00 4.30
341 345 1.920835 GGAAGGCAGTCTGGAGGGT 60.921 63.158 1.14 0.00 0.00 4.34
342 346 1.599576 GAAGGCAGTCTGGAGGGTC 59.400 63.158 1.14 0.00 0.00 4.46
343 347 1.904990 GAAGGCAGTCTGGAGGGTCC 61.905 65.000 1.14 0.00 36.96 4.46
344 348 2.607750 GGCAGTCTGGAGGGTCCA 60.608 66.667 1.14 0.00 45.98 4.02
351 355 3.478780 TGGAGGGTCCAACGGAAG 58.521 61.111 0.00 0.00 45.00 3.46
352 356 1.460689 TGGAGGGTCCAACGGAAGT 60.461 57.895 0.00 0.00 45.00 3.01
353 357 1.477685 TGGAGGGTCCAACGGAAGTC 61.478 60.000 0.00 0.00 45.00 3.01
366 370 4.124851 ACGGAAGTCATGATGTAACTCC 57.875 45.455 0.00 0.00 44.19 3.85
367 371 3.116300 CGGAAGTCATGATGTAACTCCG 58.884 50.000 0.00 7.13 32.02 4.63
368 372 3.458189 GGAAGTCATGATGTAACTCCGG 58.542 50.000 0.00 0.00 0.00 5.14
369 373 2.604046 AGTCATGATGTAACTCCGGC 57.396 50.000 0.00 0.00 0.00 6.13
370 374 1.202417 AGTCATGATGTAACTCCGGCG 60.202 52.381 0.00 0.00 0.00 6.46
371 375 0.104120 TCATGATGTAACTCCGGCGG 59.896 55.000 22.51 22.51 0.00 6.13
372 376 1.227556 ATGATGTAACTCCGGCGGC 60.228 57.895 23.83 7.39 0.00 6.53
373 377 2.588034 GATGTAACTCCGGCGGCC 60.588 66.667 23.83 9.54 0.00 6.13
374 378 3.379865 GATGTAACTCCGGCGGCCA 62.380 63.158 23.83 12.48 0.00 5.36
375 379 2.660258 GATGTAACTCCGGCGGCCAT 62.660 60.000 23.83 16.64 0.00 4.40
376 380 2.895372 GTAACTCCGGCGGCCATG 60.895 66.667 23.83 13.43 0.00 3.66
377 381 4.849310 TAACTCCGGCGGCCATGC 62.849 66.667 23.83 0.00 0.00 4.06
397 401 3.058160 CGAGGGGTGGCAAGCAAG 61.058 66.667 0.00 0.00 0.00 4.01
398 402 3.376918 GAGGGGTGGCAAGCAAGC 61.377 66.667 0.00 0.00 0.00 4.01
399 403 3.875510 GAGGGGTGGCAAGCAAGCT 62.876 63.158 0.00 0.00 34.17 3.74
400 404 3.688159 GGGGTGGCAAGCAAGCTG 61.688 66.667 0.00 0.00 34.17 4.24
401 405 2.914097 GGGTGGCAAGCAAGCTGT 60.914 61.111 0.00 0.00 34.17 4.40
402 406 2.337532 GGTGGCAAGCAAGCTGTG 59.662 61.111 0.00 0.00 34.17 3.66
411 415 3.648982 CAAGCTGTGCCGCGACAA 61.649 61.111 8.23 0.00 34.40 3.18
412 416 3.649986 AAGCTGTGCCGCGACAAC 61.650 61.111 8.23 0.00 34.40 3.32
424 428 3.474806 GACAACGTGGCGGAGATG 58.525 61.111 0.00 0.00 0.00 2.90
425 429 2.740714 GACAACGTGGCGGAGATGC 61.741 63.158 0.00 0.00 0.00 3.91
426 430 3.853330 CAACGTGGCGGAGATGCG 61.853 66.667 0.00 0.00 35.06 4.73
430 434 4.451150 GTGGCGGAGATGCGGTCA 62.451 66.667 0.00 0.00 35.06 4.02
431 435 4.147449 TGGCGGAGATGCGGTCAG 62.147 66.667 0.00 0.00 35.06 3.51
432 436 4.899239 GGCGGAGATGCGGTCAGG 62.899 72.222 0.00 0.00 35.06 3.86
433 437 4.899239 GCGGAGATGCGGTCAGGG 62.899 72.222 0.00 0.00 0.00 4.45
434 438 4.227134 CGGAGATGCGGTCAGGGG 62.227 72.222 0.00 0.00 0.00 4.79
435 439 3.866582 GGAGATGCGGTCAGGGGG 61.867 72.222 0.00 0.00 0.00 5.40
436 440 3.083997 GAGATGCGGTCAGGGGGT 61.084 66.667 0.00 0.00 0.00 4.95
437 441 3.391665 GAGATGCGGTCAGGGGGTG 62.392 68.421 0.00 0.00 0.00 4.61
438 442 4.489771 GATGCGGTCAGGGGGTGG 62.490 72.222 0.00 0.00 0.00 4.61
443 447 4.677151 GGTCAGGGGGTGGGGACT 62.677 72.222 0.00 0.00 0.00 3.85
444 448 3.009714 GTCAGGGGGTGGGGACTC 61.010 72.222 0.00 0.00 0.00 3.36
445 449 4.715130 TCAGGGGGTGGGGACTCG 62.715 72.222 0.00 0.00 0.00 4.18
446 450 4.715130 CAGGGGGTGGGGACTCGA 62.715 72.222 0.00 0.00 0.00 4.04
447 451 4.400251 AGGGGGTGGGGACTCGAG 62.400 72.222 11.84 11.84 0.00 4.04
452 456 4.803426 GTGGGGACTCGAGCGCTG 62.803 72.222 18.48 7.71 0.00 5.18
457 461 4.121669 GACTCGAGCGCTGCAGGA 62.122 66.667 18.48 5.70 0.00 3.86
458 462 4.427661 ACTCGAGCGCTGCAGGAC 62.428 66.667 18.48 0.00 0.00 3.85
465 469 4.680237 CGCTGCAGGACGGTTGGA 62.680 66.667 17.12 0.00 0.00 3.53
466 470 3.050275 GCTGCAGGACGGTTGGAC 61.050 66.667 17.12 0.00 0.00 4.02
467 471 2.738521 CTGCAGGACGGTTGGACG 60.739 66.667 5.57 0.00 40.31 4.79
468 472 4.308458 TGCAGGACGGTTGGACGG 62.308 66.667 0.00 0.00 38.39 4.79
470 474 3.622826 CAGGACGGTTGGACGGGT 61.623 66.667 0.00 0.00 38.39 5.28
471 475 3.622826 AGGACGGTTGGACGGGTG 61.623 66.667 0.00 0.00 38.39 4.61
473 477 4.309950 GACGGTTGGACGGGTGCT 62.310 66.667 0.00 0.00 38.39 4.40
474 478 4.309950 ACGGTTGGACGGGTGCTC 62.310 66.667 0.00 0.00 38.39 4.26
493 497 3.499737 CGGCAAGGCGGACATCAC 61.500 66.667 8.26 0.00 0.00 3.06
494 498 3.499737 GGCAAGGCGGACATCACG 61.500 66.667 0.00 0.00 0.00 4.35
501 505 3.976375 CGGACATCACGCGCGATG 61.976 66.667 39.36 29.94 46.78 3.84
502 506 2.582226 GGACATCACGCGCGATGA 60.582 61.111 36.04 32.42 44.67 2.92
503 507 1.951130 GGACATCACGCGCGATGAT 60.951 57.895 36.04 33.05 44.67 2.45
506 510 4.661461 ATCACGCGCGATGATGAT 57.339 50.000 39.36 29.84 35.44 2.45
507 511 2.147820 ATCACGCGCGATGATGATG 58.852 52.632 39.36 22.36 35.44 3.07
508 512 1.894223 ATCACGCGCGATGATGATGC 61.894 55.000 39.36 0.00 35.44 3.91
509 513 2.585801 ACGCGCGATGATGATGCA 60.586 55.556 39.36 0.00 0.00 3.96
510 514 2.170273 CGCGCGATGATGATGCAG 59.830 61.111 28.94 0.00 0.00 4.41
511 515 2.305127 CGCGCGATGATGATGCAGA 61.305 57.895 28.94 0.00 0.00 4.26
512 516 1.491999 GCGCGATGATGATGCAGAG 59.508 57.895 12.10 0.00 0.00 3.35
513 517 1.898459 GCGCGATGATGATGCAGAGG 61.898 60.000 12.10 0.00 0.00 3.69
514 518 0.319297 CGCGATGATGATGCAGAGGA 60.319 55.000 0.00 0.00 0.00 3.71
515 519 1.430479 GCGATGATGATGCAGAGGAG 58.570 55.000 0.00 0.00 0.00 3.69
516 520 1.000618 GCGATGATGATGCAGAGGAGA 59.999 52.381 0.00 0.00 0.00 3.71
517 521 2.927443 GCGATGATGATGCAGAGGAGAG 60.927 54.545 0.00 0.00 0.00 3.20
518 522 2.296752 CGATGATGATGCAGAGGAGAGT 59.703 50.000 0.00 0.00 0.00 3.24
519 523 3.612241 CGATGATGATGCAGAGGAGAGTC 60.612 52.174 0.00 0.00 0.00 3.36
520 524 1.680207 TGATGATGCAGAGGAGAGTCG 59.320 52.381 0.00 0.00 0.00 4.18
521 525 1.952990 GATGATGCAGAGGAGAGTCGA 59.047 52.381 0.00 0.00 0.00 4.20
522 526 1.387539 TGATGCAGAGGAGAGTCGAG 58.612 55.000 0.00 0.00 0.00 4.04
523 527 0.667993 GATGCAGAGGAGAGTCGAGG 59.332 60.000 0.00 0.00 0.00 4.63
524 528 0.257328 ATGCAGAGGAGAGTCGAGGA 59.743 55.000 0.00 0.00 0.00 3.71
525 529 0.038310 TGCAGAGGAGAGTCGAGGAA 59.962 55.000 0.00 0.00 0.00 3.36
526 530 0.738389 GCAGAGGAGAGTCGAGGAAG 59.262 60.000 0.00 0.00 0.00 3.46
527 531 1.680555 GCAGAGGAGAGTCGAGGAAGA 60.681 57.143 0.00 0.00 0.00 2.87
528 532 2.717390 CAGAGGAGAGTCGAGGAAGAA 58.283 52.381 0.00 0.00 0.00 2.52
529 533 2.682856 CAGAGGAGAGTCGAGGAAGAAG 59.317 54.545 0.00 0.00 0.00 2.85
530 534 2.021457 GAGGAGAGTCGAGGAAGAAGG 58.979 57.143 0.00 0.00 0.00 3.46
531 535 1.636519 AGGAGAGTCGAGGAAGAAGGA 59.363 52.381 0.00 0.00 0.00 3.36
532 536 2.243736 AGGAGAGTCGAGGAAGAAGGAT 59.756 50.000 0.00 0.00 0.00 3.24
533 537 2.360801 GGAGAGTCGAGGAAGAAGGATG 59.639 54.545 0.00 0.00 0.00 3.51
534 538 3.283751 GAGAGTCGAGGAAGAAGGATGA 58.716 50.000 0.00 0.00 0.00 2.92
535 539 3.287222 AGAGTCGAGGAAGAAGGATGAG 58.713 50.000 0.00 0.00 0.00 2.90
536 540 2.360801 GAGTCGAGGAAGAAGGATGAGG 59.639 54.545 0.00 0.00 0.00 3.86
537 541 2.104170 GTCGAGGAAGAAGGATGAGGT 58.896 52.381 0.00 0.00 0.00 3.85
538 542 2.103373 TCGAGGAAGAAGGATGAGGTG 58.897 52.381 0.00 0.00 0.00 4.00
539 543 1.137872 CGAGGAAGAAGGATGAGGTGG 59.862 57.143 0.00 0.00 0.00 4.61
540 544 2.472029 GAGGAAGAAGGATGAGGTGGA 58.528 52.381 0.00 0.00 0.00 4.02
541 545 2.840651 GAGGAAGAAGGATGAGGTGGAA 59.159 50.000 0.00 0.00 0.00 3.53
542 546 2.843113 AGGAAGAAGGATGAGGTGGAAG 59.157 50.000 0.00 0.00 0.00 3.46
543 547 2.092699 GGAAGAAGGATGAGGTGGAAGG 60.093 54.545 0.00 0.00 0.00 3.46
544 548 1.589414 AGAAGGATGAGGTGGAAGGG 58.411 55.000 0.00 0.00 0.00 3.95
545 549 0.548510 GAAGGATGAGGTGGAAGGGG 59.451 60.000 0.00 0.00 0.00 4.79
546 550 0.921256 AAGGATGAGGTGGAAGGGGG 60.921 60.000 0.00 0.00 0.00 5.40
547 551 1.619669 GGATGAGGTGGAAGGGGGT 60.620 63.158 0.00 0.00 0.00 4.95
548 552 1.636769 GGATGAGGTGGAAGGGGGTC 61.637 65.000 0.00 0.00 0.00 4.46
549 553 1.972660 GATGAGGTGGAAGGGGGTCG 61.973 65.000 0.00 0.00 0.00 4.79
550 554 2.606826 GAGGTGGAAGGGGGTCGT 60.607 66.667 0.00 0.00 0.00 4.34
551 555 2.928396 AGGTGGAAGGGGGTCGTG 60.928 66.667 0.00 0.00 0.00 4.35
552 556 3.246880 GGTGGAAGGGGGTCGTGT 61.247 66.667 0.00 0.00 0.00 4.49
553 557 2.826003 GGTGGAAGGGGGTCGTGTT 61.826 63.158 0.00 0.00 0.00 3.32
554 558 1.599797 GTGGAAGGGGGTCGTGTTG 60.600 63.158 0.00 0.00 0.00 3.33
555 559 1.766864 TGGAAGGGGGTCGTGTTGA 60.767 57.895 0.00 0.00 0.00 3.18
567 571 4.547956 GTCGTGTTGACTTGATCTAACG 57.452 45.455 0.00 0.00 44.58 3.18
568 572 3.364023 GTCGTGTTGACTTGATCTAACGG 59.636 47.826 0.00 0.00 44.58 4.44
569 573 2.092211 CGTGTTGACTTGATCTAACGGC 59.908 50.000 0.00 0.00 0.00 5.68
570 574 2.415512 GTGTTGACTTGATCTAACGGCC 59.584 50.000 0.00 0.00 0.00 6.13
571 575 2.037902 TGTTGACTTGATCTAACGGCCA 59.962 45.455 2.24 0.00 0.00 5.36
572 576 2.672961 TGACTTGATCTAACGGCCAG 57.327 50.000 2.24 0.00 0.00 4.85
573 577 2.176045 TGACTTGATCTAACGGCCAGA 58.824 47.619 2.24 0.00 0.00 3.86
574 578 2.766263 TGACTTGATCTAACGGCCAGAT 59.234 45.455 2.24 3.14 35.43 2.90
575 579 3.126831 GACTTGATCTAACGGCCAGATG 58.873 50.000 8.73 0.00 32.86 2.90
576 580 1.869767 CTTGATCTAACGGCCAGATGC 59.130 52.381 8.73 2.46 32.86 3.91
577 581 0.249447 TGATCTAACGGCCAGATGCG 60.249 55.000 8.73 0.00 42.61 4.73
578 582 0.946221 GATCTAACGGCCAGATGCGG 60.946 60.000 8.73 0.00 45.21 5.69
579 583 2.383245 ATCTAACGGCCAGATGCGGG 62.383 60.000 2.24 0.00 44.08 6.13
585 589 3.599704 GCCAGATGCGGGCCAATC 61.600 66.667 4.39 6.19 45.87 2.67
586 590 3.282157 CCAGATGCGGGCCAATCG 61.282 66.667 4.39 0.00 0.00 3.34
587 591 3.282157 CAGATGCGGGCCAATCGG 61.282 66.667 4.39 3.02 0.00 4.18
588 592 3.479203 AGATGCGGGCCAATCGGA 61.479 61.111 4.39 0.00 0.00 4.55
589 593 3.279875 GATGCGGGCCAATCGGAC 61.280 66.667 4.39 0.00 41.20 4.79
596 600 4.404098 GCCAATCGGACGGTGGGT 62.404 66.667 14.26 0.00 32.71 4.51
597 601 2.435938 CCAATCGGACGGTGGGTG 60.436 66.667 7.26 0.00 0.00 4.61
598 602 2.435938 CAATCGGACGGTGGGTGG 60.436 66.667 0.00 0.00 0.00 4.61
599 603 4.404098 AATCGGACGGTGGGTGGC 62.404 66.667 0.00 0.00 0.00 5.01
616 620 3.270000 CCGACCGGCCGAAATTTT 58.730 55.556 30.73 2.44 0.00 1.82
617 621 1.154112 CCGACCGGCCGAAATTTTG 60.154 57.895 30.73 10.69 0.00 2.44
618 622 1.154112 CGACCGGCCGAAATTTTGG 60.154 57.895 30.73 18.91 34.66 3.28
619 623 1.214325 GACCGGCCGAAATTTTGGG 59.786 57.895 30.73 14.20 32.00 4.12
624 628 3.372123 CCGAAATTTTGGGCCGGT 58.628 55.556 15.89 0.00 35.83 5.28
625 629 1.080161 CCGAAATTTTGGGCCGGTG 60.080 57.895 15.89 0.00 35.83 4.94
626 630 1.736282 CGAAATTTTGGGCCGGTGC 60.736 57.895 1.90 0.00 0.00 5.01
627 631 1.736282 GAAATTTTGGGCCGGTGCG 60.736 57.895 1.90 0.00 38.85 5.34
648 652 4.452733 GCGCCCAGTACTCGCCTT 62.453 66.667 14.63 0.00 42.71 4.35
649 653 2.264794 CGCCCAGTACTCGCCTTT 59.735 61.111 0.00 0.00 0.00 3.11
650 654 1.375523 CGCCCAGTACTCGCCTTTT 60.376 57.895 0.00 0.00 0.00 2.27
651 655 1.635663 CGCCCAGTACTCGCCTTTTG 61.636 60.000 0.00 0.00 0.00 2.44
726 736 2.766263 TCTCTATCGGACCACAAGCAAT 59.234 45.455 0.00 0.00 0.00 3.56
969 1163 6.821616 ATTCACTTCTGGTAAGATGAGGAT 57.178 37.500 0.00 0.00 33.02 3.24
1100 1301 1.292223 CCGACTTTCTCCGCTTCCA 59.708 57.895 0.00 0.00 0.00 3.53
1384 1814 0.389391 CACCCGACAACTCACAGAGT 59.611 55.000 0.00 0.00 45.64 3.24
1626 2068 2.446435 GCAGCCTTAATGTTTGAGGGA 58.554 47.619 0.91 0.00 0.00 4.20
1665 2117 4.469657 ACAACAATGGTGTCATGGTACTT 58.530 39.130 0.00 0.00 36.56 2.24
1851 2326 5.048991 AGCCGAGAATAAATCGTGTTGTTTT 60.049 36.000 0.00 0.00 38.50 2.43
1989 2472 2.242196 GGATGTTTTCCCCTCTGGATCA 59.758 50.000 0.00 0.00 44.66 2.92
2087 2570 0.319083 ACGGATGGAAGCGTACAACA 59.681 50.000 0.00 0.00 0.00 3.33
2227 2711 3.773860 TGCAATGCGTACCCTTTTATG 57.226 42.857 0.00 0.00 0.00 1.90
2255 2740 6.627395 TTGGTTTACATAGTGTTTGAGTGG 57.373 37.500 0.00 0.00 0.00 4.00
2256 2741 5.067273 TGGTTTACATAGTGTTTGAGTGGG 58.933 41.667 0.00 0.00 0.00 4.61
2399 2901 9.788960 GGAATCAATTTTTATGTAAGTGACTCC 57.211 33.333 0.00 0.00 38.33 3.85
2404 2906 9.626045 CAATTTTTATGTAAGTGACTCCTTTCC 57.374 33.333 0.00 0.00 0.00 3.13
2405 2907 8.934023 ATTTTTATGTAAGTGACTCCTTTCCA 57.066 30.769 0.00 0.00 0.00 3.53
2406 2908 7.739498 TTTTATGTAAGTGACTCCTTTCCAC 57.261 36.000 0.00 0.00 0.00 4.02
2407 2909 3.764237 TGTAAGTGACTCCTTTCCACC 57.236 47.619 0.00 0.00 0.00 4.61
2408 2910 3.314693 TGTAAGTGACTCCTTTCCACCT 58.685 45.455 0.00 0.00 0.00 4.00
2409 2911 3.714798 TGTAAGTGACTCCTTTCCACCTT 59.285 43.478 0.00 0.00 0.00 3.50
2410 2912 3.493767 AAGTGACTCCTTTCCACCTTC 57.506 47.619 0.00 0.00 0.00 3.46
2413 2915 3.142174 GTGACTCCTTTCCACCTTCTTG 58.858 50.000 0.00 0.00 0.00 3.02
2518 3048 7.015584 TGCATAGAGTTATGTATGGATGACTGT 59.984 37.037 0.00 0.00 39.12 3.55
2523 3053 9.147732 AGAGTTATGTATGGATGACTGTTCATA 57.852 33.333 0.00 0.00 42.95 2.15
2555 3085 5.404968 TCACTTTTGTTGCTGAGTTTTGTTG 59.595 36.000 0.00 0.00 0.00 3.33
2565 3095 2.361757 TGAGTTTTGTTGGGATGTGCAG 59.638 45.455 0.00 0.00 0.00 4.41
2570 3100 1.536940 TGTTGGGATGTGCAGACATG 58.463 50.000 0.00 0.00 43.22 3.21
2701 3236 7.394359 CCCTCTGATGGAAATCTCTGTTAAAAA 59.606 37.037 0.00 0.00 0.00 1.94
2719 3254 7.445707 TGTTAAAAAGGCAGAAAGGTTGTTTTT 59.554 29.630 0.00 0.00 32.16 1.94
2814 3350 4.635699 ATTTTCCGGTAAGTGACTCCTT 57.364 40.909 0.00 0.00 0.00 3.36
2836 3372 2.939103 CCAGCCTTCTTCTAATTGGACG 59.061 50.000 0.00 0.00 0.00 4.79
2848 3384 6.037786 TCTAATTGGACGTTGAGAAGATGT 57.962 37.500 0.00 0.00 0.00 3.06
2856 3392 5.336213 GGACGTTGAGAAGATGTGTAACCTA 60.336 44.000 0.00 0.00 34.36 3.08
2985 3521 7.597369 GGGGTGATTGTCAATTAACTTTGTTAC 59.403 37.037 5.45 0.00 0.00 2.50
3101 3639 8.316640 ACTGAGCTTAGTTTCTTTTACATCTG 57.683 34.615 5.11 0.00 0.00 2.90
3172 3713 6.513393 GCAATTCCTCAGTTTACGGATTATGG 60.513 42.308 0.00 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
245 249 3.061848 CCCATTGTCACGGCCACC 61.062 66.667 2.24 0.00 0.00 4.61
246 250 2.033448 TCCCATTGTCACGGCCAC 59.967 61.111 2.24 0.00 0.00 5.01
247 251 2.033448 GTCCCATTGTCACGGCCA 59.967 61.111 2.24 0.00 0.00 5.36
248 252 3.124921 CGTCCCATTGTCACGGCC 61.125 66.667 0.00 0.00 0.00 6.13
249 253 3.799755 GCGTCCCATTGTCACGGC 61.800 66.667 6.72 0.00 34.04 5.68
250 254 2.047274 AGCGTCCCATTGTCACGG 60.047 61.111 6.72 0.00 34.04 4.94
251 255 3.027170 GCAGCGTCCCATTGTCACG 62.027 63.158 1.32 1.32 36.60 4.35
252 256 1.514678 TTGCAGCGTCCCATTGTCAC 61.515 55.000 0.00 0.00 0.00 3.67
253 257 0.608856 ATTGCAGCGTCCCATTGTCA 60.609 50.000 0.00 0.00 0.00 3.58
254 258 0.099436 GATTGCAGCGTCCCATTGTC 59.901 55.000 0.00 0.00 0.00 3.18
255 259 0.608856 TGATTGCAGCGTCCCATTGT 60.609 50.000 0.00 0.00 0.00 2.71
256 260 0.179156 GTGATTGCAGCGTCCCATTG 60.179 55.000 0.00 0.00 0.00 2.82
257 261 1.647545 CGTGATTGCAGCGTCCCATT 61.648 55.000 0.00 0.00 0.00 3.16
258 262 2.108514 CGTGATTGCAGCGTCCCAT 61.109 57.895 0.00 0.00 0.00 4.00
259 263 2.741985 CGTGATTGCAGCGTCCCA 60.742 61.111 0.00 0.00 0.00 4.37
260 264 3.499737 CCGTGATTGCAGCGTCCC 61.500 66.667 0.00 0.00 0.00 4.46
261 265 2.742372 ACCGTGATTGCAGCGTCC 60.742 61.111 0.00 0.00 0.00 4.79
262 266 2.027073 TCACCGTGATTGCAGCGTC 61.027 57.895 0.00 0.00 0.00 5.19
263 267 2.030412 TCACCGTGATTGCAGCGT 59.970 55.556 0.00 0.00 0.00 5.07
264 268 2.476051 GTCACCGTGATTGCAGCG 59.524 61.111 4.13 0.00 0.00 5.18
265 269 2.870372 GGTCACCGTGATTGCAGC 59.130 61.111 4.13 0.00 0.00 5.25
266 270 3.168271 CGGTCACCGTGATTGCAG 58.832 61.111 8.54 0.00 42.73 4.41
276 280 0.804933 GGTTCGAGCATACGGTCACC 60.805 60.000 0.53 0.00 39.74 4.02
277 281 0.108992 TGGTTCGAGCATACGGTCAC 60.109 55.000 0.53 0.00 39.74 3.67
278 282 0.172578 CTGGTTCGAGCATACGGTCA 59.827 55.000 0.53 0.00 39.74 4.02
279 283 1.146358 GCTGGTTCGAGCATACGGTC 61.146 60.000 0.53 0.00 38.95 4.79
280 284 1.153628 GCTGGTTCGAGCATACGGT 60.154 57.895 0.53 0.00 38.95 4.83
281 285 2.230940 CGCTGGTTCGAGCATACGG 61.231 63.158 0.53 0.00 39.07 4.02
282 286 2.230940 CCGCTGGTTCGAGCATACG 61.231 63.158 0.53 0.91 39.07 3.06
283 287 1.153628 ACCGCTGGTTCGAGCATAC 60.154 57.895 0.53 0.00 39.07 2.39
284 288 1.153647 CACCGCTGGTTCGAGCATA 60.154 57.895 0.53 0.00 39.07 3.14
285 289 2.434884 CACCGCTGGTTCGAGCAT 60.435 61.111 0.53 0.00 39.07 3.79
288 292 4.717629 TCGCACCGCTGGTTCGAG 62.718 66.667 15.49 1.79 45.15 4.04
290 294 4.717629 TCTCGCACCGCTGGTTCG 62.718 66.667 11.94 11.94 43.14 3.95
291 295 2.811317 CTCTCGCACCGCTGGTTC 60.811 66.667 0.00 0.00 31.02 3.62
298 302 2.806856 GATTGCAGCTCTCGCACCG 61.807 63.158 0.00 0.00 39.59 4.94
299 303 2.806856 CGATTGCAGCTCTCGCACC 61.807 63.158 0.00 0.00 39.59 5.01
300 304 2.018582 GACGATTGCAGCTCTCGCAC 62.019 60.000 14.65 7.71 39.59 5.34
301 305 1.807165 GACGATTGCAGCTCTCGCA 60.807 57.895 14.65 0.00 39.10 5.10
302 306 1.354337 TTGACGATTGCAGCTCTCGC 61.354 55.000 14.65 9.55 35.89 5.03
303 307 1.005242 CATTGACGATTGCAGCTCTCG 60.005 52.381 13.54 13.54 38.34 4.04
304 308 1.329906 CCATTGACGATTGCAGCTCTC 59.670 52.381 0.00 0.00 0.00 3.20
305 309 1.065926 TCCATTGACGATTGCAGCTCT 60.066 47.619 0.00 0.00 0.00 4.09
306 310 1.372582 TCCATTGACGATTGCAGCTC 58.627 50.000 0.00 0.00 0.00 4.09
307 311 1.741706 CTTCCATTGACGATTGCAGCT 59.258 47.619 0.00 0.00 0.00 4.24
308 312 1.202222 CCTTCCATTGACGATTGCAGC 60.202 52.381 0.00 0.00 0.00 5.25
309 313 1.202222 GCCTTCCATTGACGATTGCAG 60.202 52.381 0.00 0.00 0.00 4.41
310 314 0.810648 GCCTTCCATTGACGATTGCA 59.189 50.000 0.00 0.00 0.00 4.08
311 315 0.810648 TGCCTTCCATTGACGATTGC 59.189 50.000 0.00 0.00 0.00 3.56
312 316 2.086869 ACTGCCTTCCATTGACGATTG 58.913 47.619 0.00 0.00 0.00 2.67
313 317 2.026822 AGACTGCCTTCCATTGACGATT 60.027 45.455 0.00 0.00 0.00 3.34
314 318 1.556911 AGACTGCCTTCCATTGACGAT 59.443 47.619 0.00 0.00 0.00 3.73
315 319 0.976641 AGACTGCCTTCCATTGACGA 59.023 50.000 0.00 0.00 0.00 4.20
316 320 1.081892 CAGACTGCCTTCCATTGACG 58.918 55.000 0.00 0.00 0.00 4.35
317 321 1.003580 TCCAGACTGCCTTCCATTGAC 59.996 52.381 0.00 0.00 0.00 3.18
318 322 1.280133 CTCCAGACTGCCTTCCATTGA 59.720 52.381 0.00 0.00 0.00 2.57
319 323 1.681166 CCTCCAGACTGCCTTCCATTG 60.681 57.143 0.00 0.00 0.00 2.82
320 324 0.622665 CCTCCAGACTGCCTTCCATT 59.377 55.000 0.00 0.00 0.00 3.16
321 325 1.277580 CCCTCCAGACTGCCTTCCAT 61.278 60.000 0.00 0.00 0.00 3.41
322 326 1.920325 CCCTCCAGACTGCCTTCCA 60.920 63.158 0.00 0.00 0.00 3.53
323 327 1.904990 GACCCTCCAGACTGCCTTCC 61.905 65.000 0.00 0.00 0.00 3.46
324 328 1.599576 GACCCTCCAGACTGCCTTC 59.400 63.158 0.00 0.00 0.00 3.46
325 329 1.920835 GGACCCTCCAGACTGCCTT 60.921 63.158 0.00 0.00 36.28 4.35
326 330 2.284995 GGACCCTCCAGACTGCCT 60.285 66.667 0.00 0.00 36.28 4.75
327 331 2.607750 TGGACCCTCCAGACTGCC 60.608 66.667 0.00 0.00 42.67 4.85
334 338 1.460689 ACTTCCGTTGGACCCTCCA 60.461 57.895 0.00 0.00 46.61 3.86
335 339 1.295746 GACTTCCGTTGGACCCTCC 59.704 63.158 0.00 0.00 36.96 4.30
336 340 0.613777 ATGACTTCCGTTGGACCCTC 59.386 55.000 0.00 0.00 0.00 4.30
337 341 0.324943 CATGACTTCCGTTGGACCCT 59.675 55.000 0.00 0.00 0.00 4.34
338 342 0.323629 TCATGACTTCCGTTGGACCC 59.676 55.000 0.00 0.00 0.00 4.46
339 343 2.009774 CATCATGACTTCCGTTGGACC 58.990 52.381 0.00 0.00 0.00 4.46
340 344 2.699954 ACATCATGACTTCCGTTGGAC 58.300 47.619 0.00 0.00 0.00 4.02
341 345 4.020573 AGTTACATCATGACTTCCGTTGGA 60.021 41.667 0.00 0.00 0.00 3.53
342 346 4.253685 AGTTACATCATGACTTCCGTTGG 58.746 43.478 0.00 0.00 0.00 3.77
343 347 4.330074 GGAGTTACATCATGACTTCCGTTG 59.670 45.833 0.00 0.00 0.00 4.10
344 348 4.504858 GGAGTTACATCATGACTTCCGTT 58.495 43.478 0.00 0.00 0.00 4.44
345 349 3.428999 CGGAGTTACATCATGACTTCCGT 60.429 47.826 16.68 6.18 35.15 4.69
346 350 3.116300 CGGAGTTACATCATGACTTCCG 58.884 50.000 0.00 7.22 34.12 4.30
347 351 3.458189 CCGGAGTTACATCATGACTTCC 58.542 50.000 0.00 0.00 0.00 3.46
348 352 2.866762 GCCGGAGTTACATCATGACTTC 59.133 50.000 5.05 0.00 0.00 3.01
349 353 2.738643 CGCCGGAGTTACATCATGACTT 60.739 50.000 5.05 0.00 0.00 3.01
350 354 1.202417 CGCCGGAGTTACATCATGACT 60.202 52.381 5.05 0.00 0.00 3.41
351 355 1.209128 CGCCGGAGTTACATCATGAC 58.791 55.000 5.05 0.00 0.00 3.06
352 356 0.104120 CCGCCGGAGTTACATCATGA 59.896 55.000 5.05 0.00 0.00 3.07
353 357 1.498865 GCCGCCGGAGTTACATCATG 61.499 60.000 7.68 0.00 0.00 3.07
354 358 1.227556 GCCGCCGGAGTTACATCAT 60.228 57.895 7.68 0.00 0.00 2.45
355 359 2.185867 GCCGCCGGAGTTACATCA 59.814 61.111 7.68 0.00 0.00 3.07
356 360 2.588034 GGCCGCCGGAGTTACATC 60.588 66.667 7.68 0.00 0.00 3.06
357 361 2.742116 ATGGCCGCCGGAGTTACAT 61.742 57.895 7.68 2.82 0.00 2.29
358 362 3.395702 ATGGCCGCCGGAGTTACA 61.396 61.111 7.68 0.00 0.00 2.41
359 363 2.895372 CATGGCCGCCGGAGTTAC 60.895 66.667 7.68 0.00 0.00 2.50
360 364 4.849310 GCATGGCCGCCGGAGTTA 62.849 66.667 7.68 0.00 0.00 2.24
380 384 3.058160 CTTGCTTGCCACCCCTCG 61.058 66.667 0.00 0.00 0.00 4.63
381 385 3.376918 GCTTGCTTGCCACCCCTC 61.377 66.667 0.00 0.00 0.00 4.30
382 386 3.907130 AGCTTGCTTGCCACCCCT 61.907 61.111 0.00 0.00 0.00 4.79
383 387 3.688159 CAGCTTGCTTGCCACCCC 61.688 66.667 0.00 0.00 0.00 4.95
384 388 2.914097 ACAGCTTGCTTGCCACCC 60.914 61.111 0.00 0.00 0.00 4.61
385 389 2.337532 CACAGCTTGCTTGCCACC 59.662 61.111 0.00 0.00 0.00 4.61
394 398 3.648982 TTGTCGCGGCACAGCTTG 61.649 61.111 15.66 0.00 34.40 4.01
395 399 3.649986 GTTGTCGCGGCACAGCTT 61.650 61.111 15.66 0.00 34.40 3.74
398 402 4.354212 CACGTTGTCGCGGCACAG 62.354 66.667 15.66 13.57 41.18 3.66
406 410 2.126071 ATCTCCGCCACGTTGTCG 60.126 61.111 0.00 0.00 43.34 4.35
407 411 2.740714 GCATCTCCGCCACGTTGTC 61.741 63.158 0.00 0.00 0.00 3.18
408 412 2.742372 GCATCTCCGCCACGTTGT 60.742 61.111 0.00 0.00 0.00 3.32
409 413 3.853330 CGCATCTCCGCCACGTTG 61.853 66.667 0.00 0.00 0.00 4.10
413 417 4.451150 TGACCGCATCTCCGCCAC 62.451 66.667 0.00 0.00 0.00 5.01
414 418 4.147449 CTGACCGCATCTCCGCCA 62.147 66.667 0.00 0.00 0.00 5.69
415 419 4.899239 CCTGACCGCATCTCCGCC 62.899 72.222 0.00 0.00 0.00 6.13
416 420 4.899239 CCCTGACCGCATCTCCGC 62.899 72.222 0.00 0.00 0.00 5.54
417 421 4.227134 CCCCTGACCGCATCTCCG 62.227 72.222 0.00 0.00 0.00 4.63
418 422 3.866582 CCCCCTGACCGCATCTCC 61.867 72.222 0.00 0.00 0.00 3.71
419 423 3.083997 ACCCCCTGACCGCATCTC 61.084 66.667 0.00 0.00 0.00 2.75
420 424 3.402681 CACCCCCTGACCGCATCT 61.403 66.667 0.00 0.00 0.00 2.90
421 425 4.489771 CCACCCCCTGACCGCATC 62.490 72.222 0.00 0.00 0.00 3.91
426 430 4.677151 AGTCCCCACCCCCTGACC 62.677 72.222 0.00 0.00 0.00 4.02
427 431 3.009714 GAGTCCCCACCCCCTGAC 61.010 72.222 0.00 0.00 0.00 3.51
428 432 4.715130 CGAGTCCCCACCCCCTGA 62.715 72.222 0.00 0.00 0.00 3.86
429 433 4.715130 TCGAGTCCCCACCCCCTG 62.715 72.222 0.00 0.00 0.00 4.45
430 434 4.400251 CTCGAGTCCCCACCCCCT 62.400 72.222 3.62 0.00 0.00 4.79
435 439 4.803426 CAGCGCTCGAGTCCCCAC 62.803 72.222 7.13 0.00 0.00 4.61
440 444 4.121669 TCCTGCAGCGCTCGAGTC 62.122 66.667 7.13 6.51 0.00 3.36
441 445 4.427661 GTCCTGCAGCGCTCGAGT 62.428 66.667 7.13 0.00 0.00 4.18
448 452 4.680237 TCCAACCGTCCTGCAGCG 62.680 66.667 8.66 7.54 0.00 5.18
449 453 3.050275 GTCCAACCGTCCTGCAGC 61.050 66.667 8.66 0.00 0.00 5.25
450 454 2.738521 CGTCCAACCGTCCTGCAG 60.739 66.667 6.78 6.78 0.00 4.41
451 455 4.308458 CCGTCCAACCGTCCTGCA 62.308 66.667 0.00 0.00 0.00 4.41
453 457 3.622826 ACCCGTCCAACCGTCCTG 61.623 66.667 0.00 0.00 0.00 3.86
454 458 3.622826 CACCCGTCCAACCGTCCT 61.623 66.667 0.00 0.00 0.00 3.85
456 460 4.309950 AGCACCCGTCCAACCGTC 62.310 66.667 0.00 0.00 0.00 4.79
457 461 4.309950 GAGCACCCGTCCAACCGT 62.310 66.667 0.00 0.00 0.00 4.83
476 480 3.499737 GTGATGTCCGCCTTGCCG 61.500 66.667 0.00 0.00 0.00 5.69
477 481 3.499737 CGTGATGTCCGCCTTGCC 61.500 66.667 0.00 0.00 0.00 4.52
478 482 4.166011 GCGTGATGTCCGCCTTGC 62.166 66.667 0.00 0.00 45.20 4.01
484 488 3.976375 CATCGCGCGTGATGTCCG 61.976 66.667 40.57 24.13 40.67 4.79
485 489 1.951130 ATCATCGCGCGTGATGTCC 60.951 57.895 43.84 14.19 44.82 4.02
486 490 1.200103 CATCATCGCGCGTGATGTC 59.800 57.895 43.84 14.89 44.92 3.06
487 491 3.312729 CATCATCGCGCGTGATGT 58.687 55.556 43.84 33.27 44.92 3.06
489 493 1.894223 GCATCATCATCGCGCGTGAT 61.894 55.000 29.32 29.32 36.79 3.06
490 494 2.588585 GCATCATCATCGCGCGTGA 61.589 57.895 30.98 29.18 0.00 4.35
491 495 2.127869 GCATCATCATCGCGCGTG 60.128 61.111 30.98 25.21 0.00 5.34
492 496 2.585801 TGCATCATCATCGCGCGT 60.586 55.556 30.98 14.63 0.00 6.01
493 497 2.170273 CTGCATCATCATCGCGCG 59.830 61.111 26.76 26.76 0.00 6.86
494 498 1.491999 CTCTGCATCATCATCGCGC 59.508 57.895 0.00 0.00 0.00 6.86
495 499 0.319297 TCCTCTGCATCATCATCGCG 60.319 55.000 0.00 0.00 0.00 5.87
496 500 1.000618 TCTCCTCTGCATCATCATCGC 59.999 52.381 0.00 0.00 0.00 4.58
497 501 2.296752 ACTCTCCTCTGCATCATCATCG 59.703 50.000 0.00 0.00 0.00 3.84
498 502 3.612241 CGACTCTCCTCTGCATCATCATC 60.612 52.174 0.00 0.00 0.00 2.92
499 503 2.296752 CGACTCTCCTCTGCATCATCAT 59.703 50.000 0.00 0.00 0.00 2.45
500 504 1.680207 CGACTCTCCTCTGCATCATCA 59.320 52.381 0.00 0.00 0.00 3.07
501 505 1.952990 TCGACTCTCCTCTGCATCATC 59.047 52.381 0.00 0.00 0.00 2.92
502 506 1.955778 CTCGACTCTCCTCTGCATCAT 59.044 52.381 0.00 0.00 0.00 2.45
503 507 1.387539 CTCGACTCTCCTCTGCATCA 58.612 55.000 0.00 0.00 0.00 3.07
504 508 0.667993 CCTCGACTCTCCTCTGCATC 59.332 60.000 0.00 0.00 0.00 3.91
505 509 0.257328 TCCTCGACTCTCCTCTGCAT 59.743 55.000 0.00 0.00 0.00 3.96
506 510 0.038310 TTCCTCGACTCTCCTCTGCA 59.962 55.000 0.00 0.00 0.00 4.41
507 511 0.738389 CTTCCTCGACTCTCCTCTGC 59.262 60.000 0.00 0.00 0.00 4.26
508 512 2.411628 TCTTCCTCGACTCTCCTCTG 57.588 55.000 0.00 0.00 0.00 3.35
509 513 2.356741 CCTTCTTCCTCGACTCTCCTCT 60.357 54.545 0.00 0.00 0.00 3.69
510 514 2.021457 CCTTCTTCCTCGACTCTCCTC 58.979 57.143 0.00 0.00 0.00 3.71
511 515 1.636519 TCCTTCTTCCTCGACTCTCCT 59.363 52.381 0.00 0.00 0.00 3.69
512 516 2.131776 TCCTTCTTCCTCGACTCTCC 57.868 55.000 0.00 0.00 0.00 3.71
513 517 3.283751 TCATCCTTCTTCCTCGACTCTC 58.716 50.000 0.00 0.00 0.00 3.20
514 518 3.287222 CTCATCCTTCTTCCTCGACTCT 58.713 50.000 0.00 0.00 0.00 3.24
515 519 2.360801 CCTCATCCTTCTTCCTCGACTC 59.639 54.545 0.00 0.00 0.00 3.36
516 520 2.291930 ACCTCATCCTTCTTCCTCGACT 60.292 50.000 0.00 0.00 0.00 4.18
517 521 2.104170 ACCTCATCCTTCTTCCTCGAC 58.896 52.381 0.00 0.00 0.00 4.20
518 522 2.103373 CACCTCATCCTTCTTCCTCGA 58.897 52.381 0.00 0.00 0.00 4.04
519 523 1.137872 CCACCTCATCCTTCTTCCTCG 59.862 57.143 0.00 0.00 0.00 4.63
520 524 2.472029 TCCACCTCATCCTTCTTCCTC 58.528 52.381 0.00 0.00 0.00 3.71
521 525 2.649742 TCCACCTCATCCTTCTTCCT 57.350 50.000 0.00 0.00 0.00 3.36
522 526 2.092699 CCTTCCACCTCATCCTTCTTCC 60.093 54.545 0.00 0.00 0.00 3.46
523 527 2.092699 CCCTTCCACCTCATCCTTCTTC 60.093 54.545 0.00 0.00 0.00 2.87
524 528 1.918957 CCCTTCCACCTCATCCTTCTT 59.081 52.381 0.00 0.00 0.00 2.52
525 529 1.589414 CCCTTCCACCTCATCCTTCT 58.411 55.000 0.00 0.00 0.00 2.85
526 530 0.548510 CCCCTTCCACCTCATCCTTC 59.451 60.000 0.00 0.00 0.00 3.46
527 531 0.921256 CCCCCTTCCACCTCATCCTT 60.921 60.000 0.00 0.00 0.00 3.36
528 532 1.308216 CCCCCTTCCACCTCATCCT 60.308 63.158 0.00 0.00 0.00 3.24
529 533 1.619669 ACCCCCTTCCACCTCATCC 60.620 63.158 0.00 0.00 0.00 3.51
530 534 1.915983 GACCCCCTTCCACCTCATC 59.084 63.158 0.00 0.00 0.00 2.92
531 535 1.995626 CGACCCCCTTCCACCTCAT 60.996 63.158 0.00 0.00 0.00 2.90
532 536 2.606519 CGACCCCCTTCCACCTCA 60.607 66.667 0.00 0.00 0.00 3.86
533 537 2.606826 ACGACCCCCTTCCACCTC 60.607 66.667 0.00 0.00 0.00 3.85
534 538 2.928396 CACGACCCCCTTCCACCT 60.928 66.667 0.00 0.00 0.00 4.00
535 539 2.826003 AACACGACCCCCTTCCACC 61.826 63.158 0.00 0.00 0.00 4.61
536 540 1.599797 CAACACGACCCCCTTCCAC 60.600 63.158 0.00 0.00 0.00 4.02
537 541 1.766864 TCAACACGACCCCCTTCCA 60.767 57.895 0.00 0.00 0.00 3.53
538 542 1.302271 GTCAACACGACCCCCTTCC 60.302 63.158 0.00 0.00 38.85 3.46
539 543 0.108019 AAGTCAACACGACCCCCTTC 59.892 55.000 0.00 0.00 46.69 3.46
540 544 0.179029 CAAGTCAACACGACCCCCTT 60.179 55.000 0.00 0.00 46.69 3.95
541 545 1.052124 TCAAGTCAACACGACCCCCT 61.052 55.000 0.00 0.00 46.69 4.79
542 546 0.036306 ATCAAGTCAACACGACCCCC 59.964 55.000 0.00 0.00 46.69 5.40
543 547 1.002087 AGATCAAGTCAACACGACCCC 59.998 52.381 0.00 0.00 46.69 4.95
544 548 2.457366 AGATCAAGTCAACACGACCC 57.543 50.000 0.00 0.00 46.69 4.46
545 549 3.364023 CGTTAGATCAAGTCAACACGACC 59.636 47.826 0.00 0.00 46.69 4.79
546 550 3.364023 CCGTTAGATCAAGTCAACACGAC 59.636 47.826 0.00 0.00 45.77 4.34
547 551 3.571571 CCGTTAGATCAAGTCAACACGA 58.428 45.455 0.00 0.00 31.30 4.35
548 552 2.092211 GCCGTTAGATCAAGTCAACACG 59.908 50.000 0.00 0.00 0.00 4.49
549 553 2.415512 GGCCGTTAGATCAAGTCAACAC 59.584 50.000 0.00 0.00 0.00 3.32
550 554 2.037902 TGGCCGTTAGATCAAGTCAACA 59.962 45.455 0.00 0.00 0.00 3.33
551 555 2.673368 CTGGCCGTTAGATCAAGTCAAC 59.327 50.000 0.00 0.00 0.00 3.18
552 556 2.565391 TCTGGCCGTTAGATCAAGTCAA 59.435 45.455 0.00 0.00 0.00 3.18
553 557 2.176045 TCTGGCCGTTAGATCAAGTCA 58.824 47.619 0.00 0.00 0.00 3.41
554 558 2.961526 TCTGGCCGTTAGATCAAGTC 57.038 50.000 0.00 0.00 0.00 3.01
555 559 2.743183 GCATCTGGCCGTTAGATCAAGT 60.743 50.000 0.00 0.00 32.75 3.16
556 560 1.869767 GCATCTGGCCGTTAGATCAAG 59.130 52.381 0.00 0.00 32.75 3.02
557 561 1.806247 CGCATCTGGCCGTTAGATCAA 60.806 52.381 0.00 0.00 40.31 2.57
558 562 0.249447 CGCATCTGGCCGTTAGATCA 60.249 55.000 0.00 0.00 40.31 2.92
559 563 0.946221 CCGCATCTGGCCGTTAGATC 60.946 60.000 0.00 0.00 40.31 2.75
560 564 1.069765 CCGCATCTGGCCGTTAGAT 59.930 57.895 0.00 0.00 40.31 1.98
561 565 2.499205 CCGCATCTGGCCGTTAGA 59.501 61.111 0.00 0.00 40.31 2.10
562 566 2.588877 CCCGCATCTGGCCGTTAG 60.589 66.667 0.00 0.00 40.31 2.34
563 567 4.849310 GCCCGCATCTGGCCGTTA 62.849 66.667 0.00 0.00 43.33 3.18
569 573 3.282157 CGATTGGCCCGCATCTGG 61.282 66.667 0.00 0.00 0.00 3.86
570 574 3.282157 CCGATTGGCCCGCATCTG 61.282 66.667 0.00 0.00 0.00 2.90
571 575 3.479203 TCCGATTGGCCCGCATCT 61.479 61.111 0.00 0.00 34.14 2.90
572 576 3.279875 GTCCGATTGGCCCGCATC 61.280 66.667 0.00 0.00 34.14 3.91
579 583 4.404098 ACCCACCGTCCGATTGGC 62.404 66.667 0.00 0.00 34.14 4.52
580 584 2.435938 CACCCACCGTCCGATTGG 60.436 66.667 0.00 0.00 0.00 3.16
581 585 2.435938 CCACCCACCGTCCGATTG 60.436 66.667 0.00 0.00 0.00 2.67
582 586 4.404098 GCCACCCACCGTCCGATT 62.404 66.667 0.00 0.00 0.00 3.34
599 603 1.154112 CAAAATTTCGGCCGGTCGG 60.154 57.895 30.66 10.38 38.57 4.79
600 604 1.154112 CCAAAATTTCGGCCGGTCG 60.154 57.895 25.52 25.52 0.00 4.79
601 605 1.214325 CCCAAAATTTCGGCCGGTC 59.786 57.895 27.83 0.00 0.00 4.79
602 606 2.938086 GCCCAAAATTTCGGCCGGT 61.938 57.895 27.83 9.24 36.63 5.28
603 607 2.125713 GCCCAAAATTTCGGCCGG 60.126 61.111 27.83 6.84 36.63 6.13
606 610 2.125713 CCGGCCCAAAATTTCGGC 60.126 61.111 17.15 17.15 42.23 5.54
607 611 1.080161 CACCGGCCCAAAATTTCGG 60.080 57.895 12.31 12.31 45.42 4.30
608 612 1.736282 GCACCGGCCCAAAATTTCG 60.736 57.895 0.00 0.00 0.00 3.46
609 613 1.736282 CGCACCGGCCCAAAATTTC 60.736 57.895 0.00 0.00 36.38 2.17
610 614 2.341911 CGCACCGGCCCAAAATTT 59.658 55.556 0.00 0.00 36.38 1.82
611 615 4.371590 GCGCACCGGCCCAAAATT 62.372 61.111 0.30 0.00 36.38 1.82
632 636 1.375523 AAAAGGCGAGTACTGGGCG 60.376 57.895 22.59 11.38 38.81 6.13
633 637 1.305930 CCAAAAGGCGAGTACTGGGC 61.306 60.000 21.65 21.65 0.00 5.36
634 638 0.323629 TCCAAAAGGCGAGTACTGGG 59.676 55.000 0.00 0.00 0.00 4.45
635 639 2.178912 TTCCAAAAGGCGAGTACTGG 57.821 50.000 0.00 0.00 0.00 4.00
636 640 4.935808 ACTATTTCCAAAAGGCGAGTACTG 59.064 41.667 0.00 0.00 0.00 2.74
637 641 5.161943 ACTATTTCCAAAAGGCGAGTACT 57.838 39.130 0.00 0.00 0.00 2.73
638 642 6.973229 TTACTATTTCCAAAAGGCGAGTAC 57.027 37.500 0.00 0.00 0.00 2.73
639 643 6.764560 GGATTACTATTTCCAAAAGGCGAGTA 59.235 38.462 0.00 0.00 31.99 2.59
640 644 5.589050 GGATTACTATTTCCAAAAGGCGAGT 59.411 40.000 0.00 0.00 31.99 4.18
641 645 5.277345 CGGATTACTATTTCCAAAAGGCGAG 60.277 44.000 0.00 0.00 31.99 5.03
642 646 4.573201 CGGATTACTATTTCCAAAAGGCGA 59.427 41.667 0.00 0.00 31.99 5.54
643 647 4.334481 ACGGATTACTATTTCCAAAAGGCG 59.666 41.667 0.00 0.00 31.99 5.52
644 648 5.830000 ACGGATTACTATTTCCAAAAGGC 57.170 39.130 0.00 0.00 31.99 4.35
647 651 9.991388 CGAAATTACGGATTACTATTTCCAAAA 57.009 29.630 0.00 0.00 33.69 2.44
648 652 9.165035 ACGAAATTACGGATTACTATTTCCAAA 57.835 29.630 0.00 0.00 33.69 3.28
649 653 8.721019 ACGAAATTACGGATTACTATTTCCAA 57.279 30.769 0.00 0.00 33.69 3.53
650 654 9.985730 ATACGAAATTACGGATTACTATTTCCA 57.014 29.630 0.00 0.00 32.56 3.53
726 736 0.970937 CAGTTCTCGGGACTGGCCTA 60.971 60.000 3.32 0.00 36.66 3.93
826 839 3.003173 CTCCTGTCCCCGCCTGAA 61.003 66.667 0.00 0.00 0.00 3.02
853 866 1.140312 AGGGAAGAAGACCAACTGCA 58.860 50.000 0.00 0.00 0.00 4.41
888 1082 4.452825 CGAGGTCCATGTCTACTTCTCTA 58.547 47.826 0.00 0.00 0.00 2.43
891 1085 1.751924 GCGAGGTCCATGTCTACTTCT 59.248 52.381 0.00 0.00 0.00 2.85
969 1163 2.353109 GCGGATCAGATCGGAATCATCA 60.353 50.000 19.58 0.00 34.07 3.07
1187 1555 1.306141 AGTTCCTCCCGGAGCATGA 60.306 57.895 9.17 0.00 42.48 3.07
1348 1778 4.475135 GAGCGGGTTGAGGAGGCC 62.475 72.222 0.00 0.00 0.00 5.19
1399 1829 1.708993 AACTTGGAGGGCAGCAGTGA 61.709 55.000 0.00 0.00 0.00 3.41
1665 2117 1.003580 GGGTGATCTGCTCCAGTTTCA 59.996 52.381 0.00 0.00 32.61 2.69
1851 2326 5.977489 AATCCACTCGATACGGATCATAA 57.023 39.130 8.69 0.00 38.62 1.90
1924 2399 1.809547 CATACCAATGAACACCACGCA 59.190 47.619 0.00 0.00 34.84 5.24
1928 2403 3.631686 GCTATGCATACCAATGAACACCA 59.368 43.478 1.16 0.00 34.84 4.17
1989 2472 4.945246 AGTAGATTGTGTCGGCGATTATT 58.055 39.130 14.79 0.00 0.00 1.40
2087 2570 2.421952 CCACTGCTATATGTGCAAGGGT 60.422 50.000 0.00 0.32 40.13 4.34
2214 2698 5.890424 ACCAAATGACATAAAAGGGTACG 57.110 39.130 0.00 0.00 0.00 3.67
2227 2711 8.349983 ACTCAAACACTATGTAAACCAAATGAC 58.650 33.333 0.00 0.00 0.00 3.06
2255 2740 9.155975 CCATACATAATTCTTGCTAGATACACC 57.844 37.037 0.00 0.00 0.00 4.16
2256 2741 8.660373 GCCATACATAATTCTTGCTAGATACAC 58.340 37.037 0.00 0.00 0.00 2.90
2407 2909 8.066360 AAGATAGCCATCTTCTCCAACAAGAAG 61.066 40.741 1.11 7.22 46.50 2.85
2408 2910 3.795688 AGCCATCTTCTCCAACAAGAA 57.204 42.857 0.00 0.00 33.57 2.52
2409 2911 4.718774 AGATAGCCATCTTCTCCAACAAGA 59.281 41.667 0.00 0.00 38.41 3.02
2410 2912 5.033589 AGATAGCCATCTTCTCCAACAAG 57.966 43.478 0.00 0.00 38.41 3.16
2413 2915 4.133078 CCAAGATAGCCATCTTCTCCAAC 58.867 47.826 4.24 0.00 46.50 3.77
2518 3048 7.495279 AGCAACAAAAGTGAGCAAAATTATGAA 59.505 29.630 0.00 0.00 33.63 2.57
2523 3053 5.177326 TCAGCAACAAAAGTGAGCAAAATT 58.823 33.333 0.00 0.00 33.63 1.82
2611 3144 3.947868 AGTACAAGAGACTGCAATGCAT 58.052 40.909 8.91 0.00 38.13 3.96
2616 3149 4.587262 TGGAAGTAGTACAAGAGACTGCAA 59.413 41.667 2.52 0.00 32.50 4.08
2658 3193 8.522830 CATCAGAGGGAATAAGTTGCTTTTAAA 58.477 33.333 0.00 0.00 0.00 1.52
2701 3236 3.103742 TCCAAAAACAACCTTTCTGCCT 58.896 40.909 0.00 0.00 0.00 4.75
2719 3254 8.573035 GGTTTGTCTATCAACTAAACATTTCCA 58.427 33.333 0.00 0.00 35.61 3.53
2814 3350 3.369471 CGTCCAATTAGAAGAAGGCTGGA 60.369 47.826 0.00 0.00 0.00 3.86
2836 3372 7.379750 AGAACTAGGTTACACATCTTCTCAAC 58.620 38.462 0.00 0.00 0.00 3.18
2848 3384 5.924254 CGTTTGTGATGAGAACTAGGTTACA 59.076 40.000 0.00 0.00 0.00 2.41
2856 3392 1.873591 GGTGCGTTTGTGATGAGAACT 59.126 47.619 0.00 0.00 0.00 3.01
3008 3546 4.662468 TTGTGATAACCTTGCTTTGCAA 57.338 36.364 0.00 0.00 46.80 4.08
3057 3595 3.807622 CAGTCTAAACTTCTGAAACCGCA 59.192 43.478 0.00 0.00 31.71 5.69
3101 3639 9.691362 TGAAAAGAGTTCCAAAATATTAAGCAC 57.309 29.630 0.00 0.00 0.00 4.40
3112 3650 7.696992 ACTTTGTACTGAAAAGAGTTCCAAA 57.303 32.000 10.27 0.00 37.91 3.28
3115 3653 8.981724 AAAAACTTTGTACTGAAAAGAGTTCC 57.018 30.769 10.27 0.00 37.91 3.62
3141 3679 5.123186 CCGTAAACTGAGGAATTGCACATTA 59.877 40.000 0.00 0.00 0.00 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.