AutoCloner

Multiple sequence alignment - TraesCS3D01G524500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3D01G524500	chr3D	100.000	4116	0	0	1	4116	604370604	604374719	0.000000e+00	7601.0
1	TraesCS3D01G524500	chr3D	100.000	86	0	0	4031	4116	604385565	604385650	4.260000e-35	159.0
2	TraesCS3D01G524500	chrUn	84.622	2224	124	78	294	2403	42183606	42181487	0.000000e+00	2012.0
3	TraesCS3D01G524500	chrUn	90.668	793	43	14	2849	3634	42181032	42180264	0.000000e+00	1026.0
4	TraesCS3D01G524500	chrUn	95.116	430	13	3	2429	2854	42181491	42181066	0.000000e+00	671.0
5	TraesCS3D01G524500	chrUn	91.200	125	10	1	3889	4012	42180148	42180024	7.080000e-38	169.0
6	TraesCS3D01G524500	chrUn	97.849	93	2	0	4024	4116	42145260	42145168	1.180000e-35	161.0
7	TraesCS3D01G524500	chrUn	100.000	29	0	0	3849	3877	321531623	321531651	2.000000e-03	54.7
8	TraesCS3D01G524500	chr3A	92.790	1165	69	9	2854	4014	734013777	734014930	0.000000e+00	1672.0
9	TraesCS3D01G524500	chr3A	94.450	1045	45	8	1817	2850	734012693	734013735	0.000000e+00	1596.0
10	TraesCS3D01G524500	chr3A	83.864	440	44	14	982	1401	734012243	734012675	1.070000e-105	394.0
11	TraesCS3D01G524500	chr3A	83.067	313	14	17	304	596	734011509	734011802	8.840000e-62	248.0
12	TraesCS3D01G524500	chr3A	98.529	136	2	0	1	136	726340500	726340635	1.480000e-59	241.0
13	TraesCS3D01G524500	chr3A	99.029	103	1	0	609	711	734011845	734011947	7.030000e-43	185.0
14	TraesCS3D01G524500	chr3A	95.050	101	5	0	4012	4112	734015023	734015123	4.260000e-35	159.0
15	TraesCS3D01G524500	chr3A	98.837	86	1	0	4027	4112	734018546	734018631	1.980000e-33	154.0
16	TraesCS3D01G524500	chr3A	83.951	162	11	7	839	998	734012071	734012219	1.540000e-29	141.0
17	TraesCS3D01G524500	chr3A	100.000	28	0	0	3849	3876	525637895	525637868	7.000000e-03	52.8
18	TraesCS3D01G524500	chr7B	91.053	380	23	3	1846	2214	644740000	644739621	1.710000e-138	503.0
19	TraesCS3D01G524500	chr7B	87.755	49	2	4	3849	3896	613981370	613981325	2.000000e-03	54.7
20	TraesCS3D01G524500	chr2A	85.841	452	27	14	288	713	635259797	635260237	2.920000e-121	446.0
21	TraesCS3D01G524500	chr2A	97.842	139	3	0	1	139	173785872	173785734	1.480000e-59	241.0
22	TraesCS3D01G524500	chr7D	99.248	133	1	0	1	133	429475736	429475868	1.480000e-59	241.0
23	TraesCS3D01G524500	chr7D	98.529	136	2	0	1	136	554581895	554581760	1.480000e-59	241.0
24	TraesCS3D01G524500	chr4D	99.248	133	1	0	1	133	469428186	469428054	1.480000e-59	241.0
25	TraesCS3D01G524500	chr4B	98.519	135	2	0	1	135	306604551	306604685	5.320000e-59	239.0
26	TraesCS3D01G524500	chr4B	95.833	144	6	0	1	144	371976402	371976259	2.470000e-57	233.0
27	TraesCS3D01G524500	chr3B	97.842	139	2	1	1	139	556088395	556088532	5.320000e-59	239.0
28	TraesCS3D01G524500	chr3B	96.774	31	1	0	3848	3878	452101746	452101716	7.000000e-03	52.8
29	TraesCS3D01G524500	chr5B	98.507	134	2	0	1	134	313139137	313139270	1.910000e-58	237.0
30	TraesCS3D01G524500	chr1A	95.050	101	5	0	4012	4112	33020351	33020451	4.260000e-35	159.0
31	TraesCS3D01G524500	chr1B	97.802	91	1	1	4023	4112	496092205	496092295	5.510000e-34	156.0
32	TraesCS3D01G524500	chr1B	98.837	86	0	1	4031	4116	14153303	14153387	7.130000e-33	152.0
33	TraesCS3D01G524500	chr1D	97.753	89	1	1	4025	4112	371655211	371655299	7.130000e-33	152.0
34	TraesCS3D01G524500	chr1D	93.069	101	7	0	4012	4112	34637480	34637580	9.220000e-32	148.0
35	TraesCS3D01G524500	chr6B	100.000	30	0	0	3849	3878	29671785	29671814	5.750000e-04	56.5
36	TraesCS3D01G524500	chr6B	94.444	36	2	0	3843	3878	59402758	59402793	5.750000e-04	56.5
37	TraesCS3D01G524500	chr2B	94.118	34	2	0	3843	3876	311407732	311407765	7.000000e-03	52.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3D01G524500	chr3D	604370604	604374719	4115	False	7601.000	7601	100.00000	1	4116	1	chr3D.!!$F1	4115
1	TraesCS3D01G524500	chrUn	42180024	42183606	3582	True	969.500	2012	90.40150	294	4012	4	chrUn.!!$R2	3718
2	TraesCS3D01G524500	chr3A	734011509	734018631	7122	False	568.625	1672	91.37975	304	4112	8	chr3A.!!$F2	3808

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
78	79	0.034089	GCCAAGCCTATCACAACCCT	60.034	55.0	0.0	0.0	0.0	4.34	F
1405	1588	0.179020	TCTTATCAATGGGCTGCCGG	60.179	55.0	13.4	0.0	0.0	6.13	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1574	1771	0.105593	ACTGATCGCAGGCATCGAAT	59.894	50.000	5.29	0.0	46.60	3.34	R
3127	3380	1.302832	CAGGCACTCCTTGTGGTCC	60.303	63.158	0.00	0.0	46.27	4.46	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
19	20	2.969628	ACTACTCTCGCTCAAATGGG	57.030	50.000	0.00	0.00	0.00	4.00
20	21	2.180276	ACTACTCTCGCTCAAATGGGT	58.820	47.619	0.00	0.00	0.00	4.51
21	22	2.567615	ACTACTCTCGCTCAAATGGGTT	59.432	45.455	0.00	0.00	0.00	4.11
22	23	3.767673	ACTACTCTCGCTCAAATGGGTTA	59.232	43.478	0.00	0.00	0.00	2.85
23	24	2.973945	ACTCTCGCTCAAATGGGTTAC	58.026	47.619	0.00	0.00	0.00	2.50
24	25	2.301870	ACTCTCGCTCAAATGGGTTACA	59.698	45.455	0.00	0.00	0.00	2.41
25	26	3.055094	ACTCTCGCTCAAATGGGTTACAT	60.055	43.478	0.00	0.00	43.07	2.29
26	27	4.161565	ACTCTCGCTCAAATGGGTTACATA	59.838	41.667	0.00	0.00	39.40	2.29
27	28	4.439057	TCTCGCTCAAATGGGTTACATAC	58.561	43.478	0.00	0.00	39.40	2.39
28	29	3.537580	TCGCTCAAATGGGTTACATACC	58.462	45.455	0.00	0.00	46.99	2.73
29	30	3.199071	TCGCTCAAATGGGTTACATACCT	59.801	43.478	0.00	0.00	46.86	3.08
30	31	4.406326	TCGCTCAAATGGGTTACATACCTA	59.594	41.667	0.00	0.00	46.86	3.08
32	33	5.179368	CGCTCAAATGGGTTACATACCTATG	59.821	44.000	0.00	0.00	46.51	2.23
33	34	5.473504	GCTCAAATGGGTTACATACCTATGG	59.526	44.000	0.00	0.00	46.51	2.74
34	35	5.947663	TCAAATGGGTTACATACCTATGGG	58.052	41.667	0.00	0.00	46.51	4.00
35	36	5.672653	TCAAATGGGTTACATACCTATGGGA	59.327	40.000	0.25	0.00	46.51	4.37
36	37	5.578157	AATGGGTTACATACCTATGGGAC	57.422	43.478	0.25	0.00	46.51	4.46
37	38	4.289837	TGGGTTACATACCTATGGGACT	57.710	45.455	0.25	0.00	46.86	3.85
38	39	3.971305	TGGGTTACATACCTATGGGACTG	59.029	47.826	0.25	0.91	46.86	3.51
39	40	3.326880	GGGTTACATACCTATGGGACTGG	59.673	52.174	0.25	0.00	46.86	4.00
40	41	3.244457	GGTTACATACCTATGGGACTGGC	60.244	52.174	0.25	0.00	44.10	4.85
41	42	2.496679	ACATACCTATGGGACTGGCT	57.503	50.000	0.25	0.00	38.00	4.75
42	43	3.630625	ACATACCTATGGGACTGGCTA	57.369	47.619	0.25	0.00	38.00	3.93
43	44	3.511477	ACATACCTATGGGACTGGCTAG	58.489	50.000	0.25	0.00	38.00	3.42
44	45	3.116707	ACATACCTATGGGACTGGCTAGT	60.117	47.826	0.69	0.69	37.68	2.57
45	46	2.570386	ACCTATGGGACTGGCTAGTT	57.430	50.000	3.47	0.00	37.25	2.24
46	47	2.846950	ACCTATGGGACTGGCTAGTTT	58.153	47.619	3.47	0.00	37.25	2.66
47	48	3.190439	ACCTATGGGACTGGCTAGTTTT	58.810	45.455	3.47	0.00	37.25	2.43
48	49	3.591977	ACCTATGGGACTGGCTAGTTTTT	59.408	43.478	3.47	0.00	37.25	1.94
49	50	4.786454	ACCTATGGGACTGGCTAGTTTTTA	59.214	41.667	3.47	0.00	37.25	1.52
50	51	5.123936	CCTATGGGACTGGCTAGTTTTTAC	58.876	45.833	3.47	0.00	37.25	2.01
51	52	3.048337	TGGGACTGGCTAGTTTTTACG	57.952	47.619	3.47	0.00	37.25	3.18
52	53	2.369532	TGGGACTGGCTAGTTTTTACGT	59.630	45.455	3.47	0.00	37.25	3.57
53	54	3.181452	TGGGACTGGCTAGTTTTTACGTT	60.181	43.478	3.47	0.00	37.25	3.99
54	55	3.187842	GGGACTGGCTAGTTTTTACGTTG	59.812	47.826	3.47	0.00	37.25	4.10
55	56	3.187842	GGACTGGCTAGTTTTTACGTTGG	59.812	47.826	3.47	0.00	37.25	3.77
56	57	2.551032	ACTGGCTAGTTTTTACGTTGGC	59.449	45.455	0.00	0.00	31.66	4.52
57	58	2.812011	CTGGCTAGTTTTTACGTTGGCT	59.188	45.455	0.00	0.00	0.00	4.75
58	59	2.809696	TGGCTAGTTTTTACGTTGGCTC	59.190	45.455	0.00	0.00	0.00	4.70
59	60	2.159747	GGCTAGTTTTTACGTTGGCTCG	60.160	50.000	0.00	1.70	0.00	5.03
60	61	2.723923	GCTAGTTTTTACGTTGGCTCGC	60.724	50.000	0.00	0.00	0.00	5.03
61	62	0.589708	AGTTTTTACGTTGGCTCGCC	59.410	50.000	0.00	0.00	0.00	5.54
62	63	0.308376	GTTTTTACGTTGGCTCGCCA	59.692	50.000	6.52	6.52	45.63	5.69
72	73	3.724494	GCTCGCCAAGCCTATCAC	58.276	61.111	0.00	0.00	45.92	3.06
73	74	1.153369	GCTCGCCAAGCCTATCACA	60.153	57.895	0.00	0.00	45.92	3.58
74	75	0.744414	GCTCGCCAAGCCTATCACAA	60.744	55.000	0.00	0.00	45.92	3.33
75	76	1.009829	CTCGCCAAGCCTATCACAAC	58.990	55.000	0.00	0.00	0.00	3.32
76	77	0.392461	TCGCCAAGCCTATCACAACC	60.392	55.000	0.00	0.00	0.00	3.77
77	78	1.376609	CGCCAAGCCTATCACAACCC	61.377	60.000	0.00	0.00	0.00	4.11
78	79	0.034089	GCCAAGCCTATCACAACCCT	60.034	55.000	0.00	0.00	0.00	4.34
79	80	2.019156	GCCAAGCCTATCACAACCCTC	61.019	57.143	0.00	0.00	0.00	4.30
80	81	1.408822	CCAAGCCTATCACAACCCTCC	60.409	57.143	0.00	0.00	0.00	4.30
81	82	1.561542	CAAGCCTATCACAACCCTCCT	59.438	52.381	0.00	0.00	0.00	3.69
82	83	1.501582	AGCCTATCACAACCCTCCTC	58.498	55.000	0.00	0.00	0.00	3.71
83	84	0.470341	GCCTATCACAACCCTCCTCC	59.530	60.000	0.00	0.00	0.00	4.30
84	85	1.972207	GCCTATCACAACCCTCCTCCT	60.972	57.143	0.00	0.00	0.00	3.69
85	86	2.482494	CCTATCACAACCCTCCTCCTT	58.518	52.381	0.00	0.00	0.00	3.36
86	87	2.846827	CCTATCACAACCCTCCTCCTTT	59.153	50.000	0.00	0.00	0.00	3.11
87	88	4.037927	CCTATCACAACCCTCCTCCTTTA	58.962	47.826	0.00	0.00	0.00	1.85
88	89	4.141688	CCTATCACAACCCTCCTCCTTTAC	60.142	50.000	0.00	0.00	0.00	2.01
89	90	1.982958	TCACAACCCTCCTCCTTTACC	59.017	52.381	0.00	0.00	0.00	2.85
90	91	1.004394	CACAACCCTCCTCCTTTACCC	59.996	57.143	0.00	0.00	0.00	3.69
91	92	0.252197	CAACCCTCCTCCTTTACCCG	59.748	60.000	0.00	0.00	0.00	5.28
92	93	0.912968	AACCCTCCTCCTTTACCCGG	60.913	60.000	0.00	0.00	0.00	5.73
93	94	2.070650	CCCTCCTCCTTTACCCGGG	61.071	68.421	22.25	22.25	0.00	5.73
94	95	2.743179	CCTCCTCCTTTACCCGGGC	61.743	68.421	24.08	0.00	0.00	6.13
95	96	1.689582	CTCCTCCTTTACCCGGGCT	60.690	63.158	24.08	10.93	0.00	5.19
96	97	1.229723	TCCTCCTTTACCCGGGCTT	60.230	57.895	24.08	4.08	0.00	4.35
97	98	1.077716	CCTCCTTTACCCGGGCTTG	60.078	63.158	24.08	8.51	0.00	4.01
98	99	1.077716	CTCCTTTACCCGGGCTTGG	60.078	63.158	24.08	17.99	0.00	3.61
108	109	3.489513	GGGCTTGGGACCGGCTAT	61.490	66.667	0.00	0.00	0.00	2.97
109	110	2.203209	GGCTTGGGACCGGCTATG	60.203	66.667	0.00	0.00	0.00	2.23
110	111	2.902343	GCTTGGGACCGGCTATGC	60.902	66.667	0.00	0.00	0.00	3.14
111	112	2.203209	CTTGGGACCGGCTATGCC	60.203	66.667	0.00	0.00	46.75	4.40
124	125	4.464069	GGCTATGCCTAGAAGACATAGG	57.536	50.000	16.76	0.00	46.69	2.57
130	131	2.588620	CCTAGAAGACATAGGCGGAGT	58.411	52.381	0.00	0.00	33.76	3.85
131	132	2.959707	CCTAGAAGACATAGGCGGAGTT	59.040	50.000	0.00	0.00	33.76	3.01
132	133	3.385111	CCTAGAAGACATAGGCGGAGTTT	59.615	47.826	0.00	0.00	33.76	2.66
133	134	4.583489	CCTAGAAGACATAGGCGGAGTTTA	59.417	45.833	0.00	0.00	33.76	2.01
134	135	5.068723	CCTAGAAGACATAGGCGGAGTTTAA	59.931	44.000	0.00	0.00	33.76	1.52
135	136	5.416271	AGAAGACATAGGCGGAGTTTAAA	57.584	39.130	0.00	0.00	0.00	1.52
136	137	5.990668	AGAAGACATAGGCGGAGTTTAAAT	58.009	37.500	0.00	0.00	0.00	1.40
137	138	6.049790	AGAAGACATAGGCGGAGTTTAAATC	58.950	40.000	0.00	0.00	0.00	2.17
138	139	4.704965	AGACATAGGCGGAGTTTAAATCC	58.295	43.478	0.79	0.79	0.00	3.01
139	140	4.409247	AGACATAGGCGGAGTTTAAATCCT	59.591	41.667	9.79	0.00	34.45	3.24
140	141	5.601313	AGACATAGGCGGAGTTTAAATCCTA	59.399	40.000	9.79	0.00	34.45	2.94
141	142	5.855045	ACATAGGCGGAGTTTAAATCCTAG	58.145	41.667	9.79	0.00	34.45	3.02
142	143	3.195471	AGGCGGAGTTTAAATCCTAGC	57.805	47.619	9.79	6.35	34.45	3.42
143	144	2.772515	AGGCGGAGTTTAAATCCTAGCT	59.227	45.455	9.79	0.00	34.45	3.32
144	145	3.132160	GGCGGAGTTTAAATCCTAGCTC	58.868	50.000	9.79	4.62	34.45	4.09
145	146	3.431766	GGCGGAGTTTAAATCCTAGCTCA	60.432	47.826	9.79	0.00	34.45	4.26
146	147	3.556365	GCGGAGTTTAAATCCTAGCTCAC	59.444	47.826	9.79	0.00	34.45	3.51
147	148	4.680975	GCGGAGTTTAAATCCTAGCTCACT	60.681	45.833	9.79	0.00	34.45	3.41
148	149	4.806247	CGGAGTTTAAATCCTAGCTCACTG	59.194	45.833	9.79	0.00	34.45	3.66
149	150	5.624738	CGGAGTTTAAATCCTAGCTCACTGT	60.625	44.000	9.79	0.00	34.45	3.55
150	151	6.174049	GGAGTTTAAATCCTAGCTCACTGTT	58.826	40.000	4.00	0.00	33.77	3.16
151	152	7.328737	GGAGTTTAAATCCTAGCTCACTGTTA	58.671	38.462	4.00	0.00	33.77	2.41
152	153	7.822822	GGAGTTTAAATCCTAGCTCACTGTTAA	59.177	37.037	4.00	0.00	33.77	2.01
153	154	9.216117	GAGTTTAAATCCTAGCTCACTGTTAAA	57.784	33.333	0.00	0.00	0.00	1.52
154	155	9.000486	AGTTTAAATCCTAGCTCACTGTTAAAC	58.000	33.333	18.23	18.23	39.08	2.01
155	156	8.780249	GTTTAAATCCTAGCTCACTGTTAAACA	58.220	33.333	19.68	0.00	38.84	2.83
156	157	9.515226	TTTAAATCCTAGCTCACTGTTAAACAT	57.485	29.630	0.00	0.00	0.00	2.71
157	158	9.515226	TTAAATCCTAGCTCACTGTTAAACATT	57.485	29.630	0.00	0.00	0.00	2.71
158	159	8.409358	AAATCCTAGCTCACTGTTAAACATTT	57.591	30.769	0.00	0.00	0.00	2.32
159	160	8.409358	AATCCTAGCTCACTGTTAAACATTTT	57.591	30.769	0.00	0.00	0.00	1.82
160	161	9.515226	AATCCTAGCTCACTGTTAAACATTTTA	57.485	29.630	0.00	0.00	0.00	1.52
161	162	8.911918	TCCTAGCTCACTGTTAAACATTTTAA	57.088	30.769	0.00	0.00	0.00	1.52
162	163	8.780249	TCCTAGCTCACTGTTAAACATTTTAAC	58.220	33.333	12.60	12.60	35.91	2.01
163	164	8.021396	CCTAGCTCACTGTTAAACATTTTAACC	58.979	37.037	15.54	3.39	34.81	2.85
164	165	7.341445	AGCTCACTGTTAAACATTTTAACCA	57.659	32.000	15.54	6.40	34.81	3.67
165	166	7.951591	AGCTCACTGTTAAACATTTTAACCAT	58.048	30.769	15.54	4.69	34.81	3.55
166	167	7.867403	AGCTCACTGTTAAACATTTTAACCATG	59.133	33.333	15.54	13.58	34.81	3.66
167	168	7.359181	GCTCACTGTTAAACATTTTAACCATGC	60.359	37.037	15.54	10.44	34.81	4.06
168	169	7.492524	TCACTGTTAAACATTTTAACCATGCA	58.507	30.769	15.54	0.00	34.81	3.96
169	170	8.147058	TCACTGTTAAACATTTTAACCATGCAT	58.853	29.630	15.54	0.00	34.81	3.96
170	171	8.772705	CACTGTTAAACATTTTAACCATGCATT	58.227	29.630	15.54	0.00	34.81	3.56
171	172	9.336171	ACTGTTAAACATTTTAACCATGCATTT	57.664	25.926	15.54	0.00	34.81	2.32
176	177	7.665561	AACATTTTAACCATGCATTTACACC	57.334	32.000	0.00	0.00	0.00	4.16
177	178	7.003402	ACATTTTAACCATGCATTTACACCT	57.997	32.000	0.00	0.00	0.00	4.00
178	179	8.128322	ACATTTTAACCATGCATTTACACCTA	57.872	30.769	0.00	0.00	0.00	3.08
179	180	8.250332	ACATTTTAACCATGCATTTACACCTAG	58.750	33.333	0.00	0.00	0.00	3.02
180	181	8.465999	CATTTTAACCATGCATTTACACCTAGA	58.534	33.333	0.00	0.00	0.00	2.43
181	182	7.624360	TTTAACCATGCATTTACACCTAGAG	57.376	36.000	0.00	0.00	0.00	2.43
182	183	3.545703	ACCATGCATTTACACCTAGAGC	58.454	45.455	0.00	0.00	0.00	4.09
183	184	2.545526	CCATGCATTTACACCTAGAGCG	59.454	50.000	0.00	0.00	0.00	5.03
184	185	1.651987	TGCATTTACACCTAGAGCGC	58.348	50.000	0.00	0.00	0.00	5.92
185	186	0.938008	GCATTTACACCTAGAGCGCC	59.062	55.000	2.29	0.00	0.00	6.53
186	187	1.473434	GCATTTACACCTAGAGCGCCT	60.473	52.381	2.29	3.28	0.00	5.52
187	188	2.906354	CATTTACACCTAGAGCGCCTT	58.094	47.619	2.29	0.00	0.00	4.35
188	189	2.667473	TTTACACCTAGAGCGCCTTC	57.333	50.000	2.29	0.00	0.00	3.46
189	190	0.822164	TTACACCTAGAGCGCCTTCC	59.178	55.000	2.29	0.00	0.00	3.46
190	191	1.041447	TACACCTAGAGCGCCTTCCC	61.041	60.000	2.29	0.00	0.00	3.97
191	192	2.060980	CACCTAGAGCGCCTTCCCT	61.061	63.158	2.29	0.00	0.00	4.20
192	193	2.060980	ACCTAGAGCGCCTTCCCTG	61.061	63.158	2.29	0.00	0.00	4.45
193	194	2.060980	CCTAGAGCGCCTTCCCTGT	61.061	63.158	2.29	0.00	0.00	4.00
194	195	1.617947	CCTAGAGCGCCTTCCCTGTT	61.618	60.000	2.29	0.00	0.00	3.16
195	196	1.112113	CTAGAGCGCCTTCCCTGTTA	58.888	55.000	2.29	0.00	0.00	2.41
196	197	1.480954	CTAGAGCGCCTTCCCTGTTAA	59.519	52.381	2.29	0.00	0.00	2.01
197	198	0.250513	AGAGCGCCTTCCCTGTTAAG	59.749	55.000	2.29	0.00	0.00	1.85
198	199	0.249398	GAGCGCCTTCCCTGTTAAGA	59.751	55.000	2.29	0.00	0.00	2.10
199	200	0.912486	AGCGCCTTCCCTGTTAAGAT	59.088	50.000	2.29	0.00	0.00	2.40
200	201	1.017387	GCGCCTTCCCTGTTAAGATG	58.983	55.000	0.00	0.00	0.00	2.90
201	202	1.017387	CGCCTTCCCTGTTAAGATGC	58.983	55.000	0.00	0.00	0.00	3.91
202	203	1.407437	CGCCTTCCCTGTTAAGATGCT	60.407	52.381	0.00	0.00	0.00	3.79
203	204	2.019984	GCCTTCCCTGTTAAGATGCTG	58.980	52.381	0.00	0.00	0.00	4.41
204	205	2.019984	CCTTCCCTGTTAAGATGCTGC	58.980	52.381	0.00	0.00	0.00	5.25
205	206	2.356535	CCTTCCCTGTTAAGATGCTGCT	60.357	50.000	0.00	0.00	0.00	4.24
206	207	2.408271	TCCCTGTTAAGATGCTGCTG	57.592	50.000	0.00	0.00	0.00	4.41
207	208	1.630369	TCCCTGTTAAGATGCTGCTGT	59.370	47.619	0.00	0.00	0.00	4.40
208	209	2.040278	TCCCTGTTAAGATGCTGCTGTT	59.960	45.455	0.00	0.00	0.00	3.16
209	210	2.163010	CCCTGTTAAGATGCTGCTGTTG	59.837	50.000	0.00	0.00	0.00	3.33
210	211	2.415090	CCTGTTAAGATGCTGCTGTTGC	60.415	50.000	0.00	0.00	40.20	4.17
211	212	2.486982	CTGTTAAGATGCTGCTGTTGCT	59.513	45.455	0.00	0.00	40.48	3.91
212	213	2.485426	TGTTAAGATGCTGCTGTTGCTC	59.515	45.455	0.00	0.00	40.48	4.26
213	214	1.362768	TAAGATGCTGCTGTTGCTCG	58.637	50.000	0.00	0.00	40.48	5.03
214	215	0.604780	AAGATGCTGCTGTTGCTCGT	60.605	50.000	0.00	0.00	40.48	4.18
215	216	1.134075	GATGCTGCTGTTGCTCGTG	59.866	57.895	0.00	0.00	40.48	4.35
216	217	1.293963	GATGCTGCTGTTGCTCGTGA	61.294	55.000	0.00	0.00	40.48	4.35
217	218	1.296755	ATGCTGCTGTTGCTCGTGAG	61.297	55.000	0.00	0.00	40.48	3.51
218	219	2.675056	GCTGCTGTTGCTCGTGAGG	61.675	63.158	0.00	0.00	40.48	3.86
219	220	1.005748	CTGCTGTTGCTCGTGAGGA	60.006	57.895	0.00	0.00	40.48	3.71
220	221	1.287730	CTGCTGTTGCTCGTGAGGAC	61.288	60.000	0.00	0.00	40.48	3.85
235	236	4.796369	GTGAGGACGATAATAGTGGTAGC	58.204	47.826	0.00	0.00	0.00	3.58
236	237	4.277672	GTGAGGACGATAATAGTGGTAGCA	59.722	45.833	0.00	0.00	0.00	3.49
237	238	4.277672	TGAGGACGATAATAGTGGTAGCAC	59.722	45.833	17.29	17.29	0.00	4.40
238	239	3.252701	AGGACGATAATAGTGGTAGCACG	59.747	47.826	18.73	8.21	0.00	5.34
239	240	2.978489	GACGATAATAGTGGTAGCACGC	59.022	50.000	18.73	5.46	0.00	5.34
240	241	1.976728	CGATAATAGTGGTAGCACGCG	59.023	52.381	18.73	3.53	0.00	6.01
241	242	2.325761	GATAATAGTGGTAGCACGCGG	58.674	52.381	18.73	0.00	0.00	6.46
242	243	0.386476	TAATAGTGGTAGCACGCGGG	59.614	55.000	18.73	7.92	0.00	6.13
243	244	2.918230	AATAGTGGTAGCACGCGGGC	62.918	60.000	29.47	29.47	0.00	6.13
264	265	1.529865	GGGCGTTTATCCGATAACTGC	59.470	52.381	12.39	12.39	0.00	4.40
265	266	2.480845	GGCGTTTATCCGATAACTGCT	58.519	47.619	17.19	0.00	0.00	4.24
266	267	3.553508	GGGCGTTTATCCGATAACTGCTA	60.554	47.826	17.19	0.00	0.00	3.49
267	268	3.427863	GGCGTTTATCCGATAACTGCTAC	59.572	47.826	17.19	6.73	0.00	3.58
268	269	4.296690	GCGTTTATCCGATAACTGCTACT	58.703	43.478	13.11	0.00	0.00	2.57
269	270	5.455392	GCGTTTATCCGATAACTGCTACTA	58.545	41.667	13.11	0.00	0.00	1.82
270	271	5.568296	GCGTTTATCCGATAACTGCTACTAG	59.432	44.000	13.11	0.00	0.00	2.57
271	272	6.666417	CGTTTATCCGATAACTGCTACTAGT	58.334	40.000	0.00	0.00	0.00	2.57
272	273	6.577800	CGTTTATCCGATAACTGCTACTAGTG	59.422	42.308	5.39	0.00	0.00	2.74
273	274	7.519488	CGTTTATCCGATAACTGCTACTAGTGA	60.519	40.741	5.39	0.00	0.00	3.41
274	275	7.812690	TTATCCGATAACTGCTACTAGTGAA	57.187	36.000	5.39	0.00	0.00	3.18
275	276	6.710597	ATCCGATAACTGCTACTAGTGAAA	57.289	37.500	5.39	0.00	0.00	2.69
276	277	6.519679	TCCGATAACTGCTACTAGTGAAAA	57.480	37.500	5.39	0.00	0.00	2.29
277	278	6.927416	TCCGATAACTGCTACTAGTGAAAAA	58.073	36.000	5.39	0.00	0.00	1.94
278	279	7.033791	TCCGATAACTGCTACTAGTGAAAAAG	58.966	38.462	5.39	0.00	0.00	2.27
279	280	6.255887	CCGATAACTGCTACTAGTGAAAAAGG	59.744	42.308	5.39	0.00	0.00	3.11
280	281	6.812160	CGATAACTGCTACTAGTGAAAAAGGT	59.188	38.462	5.39	0.00	0.00	3.50
281	282	7.201444	CGATAACTGCTACTAGTGAAAAAGGTG	60.201	40.741	5.39	0.00	0.00	4.00
282	283	5.546621	ACTGCTACTAGTGAAAAAGGTGA	57.453	39.130	5.39	0.00	0.00	4.02
283	284	5.925509	ACTGCTACTAGTGAAAAAGGTGAA	58.074	37.500	5.39	0.00	0.00	3.18
284	285	6.534634	ACTGCTACTAGTGAAAAAGGTGAAT	58.465	36.000	5.39	0.00	0.00	2.57
285	286	7.676947	ACTGCTACTAGTGAAAAAGGTGAATA	58.323	34.615	5.39	0.00	0.00	1.75
286	287	8.154856	ACTGCTACTAGTGAAAAAGGTGAATAA	58.845	33.333	5.39	0.00	0.00	1.40
287	288	8.319143	TGCTACTAGTGAAAAAGGTGAATAAC	57.681	34.615	5.39	0.00	0.00	1.89
288	289	7.117236	TGCTACTAGTGAAAAAGGTGAATAACG	59.883	37.037	5.39	0.00	0.00	3.18
289	290	7.330208	GCTACTAGTGAAAAAGGTGAATAACGA	59.670	37.037	5.39	0.00	0.00	3.85
290	291	7.417496	ACTAGTGAAAAAGGTGAATAACGAC	57.583	36.000	0.00	0.00	0.00	4.34
291	292	5.338614	AGTGAAAAAGGTGAATAACGACG	57.661	39.130	0.00	0.00	0.00	5.12
292	293	5.051816	AGTGAAAAAGGTGAATAACGACGA	58.948	37.500	0.00	0.00	0.00	4.20
325	326	3.137544	TGCGTATATCCAATCCAAAGGGT	59.862	43.478	0.00	0.00	34.93	4.34
345	346	3.636764	GGTTGAAATGCCGGGAAGAATAT	59.363	43.478	0.00	0.00	0.00	1.28
346	347	4.825085	GGTTGAAATGCCGGGAAGAATATA	59.175	41.667	0.00	0.00	0.00	0.86
347	348	5.476945	GGTTGAAATGCCGGGAAGAATATAT	59.523	40.000	0.00	0.00	0.00	0.86
348	349	6.349363	GGTTGAAATGCCGGGAAGAATATATC	60.349	42.308	0.00	0.00	0.00	1.63
393	394	0.458669	CAATCCACATCAAGGGCAGC	59.541	55.000	0.00	0.00	0.00	5.25
396	397	2.707849	CCACATCAAGGGCAGCAGC	61.708	63.158	0.00	0.00	41.10	5.25
398	399	1.677966	ACATCAAGGGCAGCAGCAG	60.678	57.895	2.65	0.00	44.61	4.24
399	400	1.677966	CATCAAGGGCAGCAGCAGT	60.678	57.895	2.65	0.00	44.61	4.40
400	401	0.393402	CATCAAGGGCAGCAGCAGTA	60.393	55.000	2.65	0.00	44.61	2.74
414	415	0.802494	GCAGTACATGTTTGGACCCG	59.198	55.000	2.30	0.00	37.40	5.28
438	439	0.896923	GTGGCATTTGAGATTGGGCA	59.103	50.000	0.00	0.00	0.00	5.36
441	442	1.202604	GGCATTTGAGATTGGGCATGG	60.203	52.381	0.00	0.00	0.00	3.66
450	451	2.668106	ATTGGGCATGGGGAGGATGC	62.668	60.000	0.00	0.00	44.65	3.91
452	453	3.877450	GGCATGGGGAGGATGCGA	61.877	66.667	0.00	0.00	46.05	5.10
454	455	1.970114	GCATGGGGAGGATGCGATG	60.970	63.158	0.00	0.00	37.10	3.84
455	456	1.453235	CATGGGGAGGATGCGATGT	59.547	57.895	0.00	0.00	0.00	3.06
456	457	0.686789	CATGGGGAGGATGCGATGTA	59.313	55.000	0.00	0.00	0.00	2.29
457	458	0.687354	ATGGGGAGGATGCGATGTAC	59.313	55.000	0.00	0.00	0.00	2.90
563	594	2.163412	ACGACAGAGAGAGATGAGCAAC	59.837	50.000	0.00	0.00	0.00	4.17
582	613	2.588877	CCGGCGAGCCACCATTAG	60.589	66.667	9.30	0.00	35.37	1.73
588	619	1.405526	GCGAGCCACCATTAGACTGAA	60.406	52.381	0.00	0.00	0.00	3.02
589	620	2.544685	CGAGCCACCATTAGACTGAAG	58.455	52.381	0.00	0.00	0.00	3.02
590	621	2.284190	GAGCCACCATTAGACTGAAGC	58.716	52.381	0.00	0.00	0.00	3.86
592	623	2.012673	GCCACCATTAGACTGAAGCAG	58.987	52.381	0.00	0.00	37.52	4.24
593	624	2.012673	CCACCATTAGACTGAAGCAGC	58.987	52.381	0.00	0.00	34.37	5.25
595	626	1.293924	CCATTAGACTGAAGCAGCCG	58.706	55.000	0.00	0.00	34.37	5.52
596	627	1.134699	CCATTAGACTGAAGCAGCCGA	60.135	52.381	0.00	0.00	34.37	5.54
597	628	2.200067	CATTAGACTGAAGCAGCCGAG	58.800	52.381	0.00	0.00	34.37	4.63
598	629	0.532573	TTAGACTGAAGCAGCCGAGG	59.467	55.000	0.00	0.00	34.37	4.63
599	630	1.949847	TAGACTGAAGCAGCCGAGGC	61.950	60.000	5.89	5.89	42.33	4.70
753	841	2.554272	CGTCCGAAAGCCCAAACG	59.446	61.111	0.00	0.00	0.00	3.60
764	861	1.677637	GCCCAAACGAACAAACCCCA	61.678	55.000	0.00	0.00	0.00	4.96
767	864	1.202475	CCAAACGAACAAACCCCAAGG	60.202	52.381	0.00	0.00	40.04	3.61
793	890	4.028490	CCCTAGCGCCACAACCCA	62.028	66.667	2.29	0.00	0.00	4.51
794	891	2.746277	CCTAGCGCCACAACCCAC	60.746	66.667	2.29	0.00	0.00	4.61
795	892	3.118454	CTAGCGCCACAACCCACG	61.118	66.667	2.29	0.00	0.00	4.94
796	893	3.583276	CTAGCGCCACAACCCACGA	62.583	63.158	2.29	0.00	0.00	4.35
797	894	3.166490	TAGCGCCACAACCCACGAA	62.166	57.895	2.29	0.00	0.00	3.85
798	895	4.025401	GCGCCACAACCCACGAAG	62.025	66.667	0.00	0.00	0.00	3.79
799	896	4.025401	CGCCACAACCCACGAAGC	62.025	66.667	0.00	0.00	0.00	3.86
800	897	3.670377	GCCACAACCCACGAAGCC	61.670	66.667	0.00	0.00	0.00	4.35
811	908	2.597217	CGAAGCCCAAAGCCCACA	60.597	61.111	0.00	0.00	45.47	4.17
815	912	0.398381	AAGCCCAAAGCCCACAAAGA	60.398	50.000	0.00	0.00	45.47	2.52
821	918	2.695147	CCAAAGCCCACAAAGACTTTCT	59.305	45.455	0.00	0.00	30.16	2.52
822	919	3.888930	CCAAAGCCCACAAAGACTTTCTA	59.111	43.478	0.00	0.00	30.16	2.10
823	920	4.261614	CCAAAGCCCACAAAGACTTTCTAC	60.262	45.833	0.00	0.00	30.16	2.59
824	921	3.857157	AGCCCACAAAGACTTTCTACA	57.143	42.857	0.00	0.00	0.00	2.74
825	922	4.164843	AGCCCACAAAGACTTTCTACAA	57.835	40.909	0.00	0.00	0.00	2.41
826	923	4.137543	AGCCCACAAAGACTTTCTACAAG	58.862	43.478	0.00	0.00	0.00	3.16
827	924	3.883489	GCCCACAAAGACTTTCTACAAGT	59.117	43.478	0.00	0.00	0.00	3.16
828	925	4.023963	GCCCACAAAGACTTTCTACAAGTC	60.024	45.833	6.62	6.62	45.21	3.01
829	926	4.515567	CCCACAAAGACTTTCTACAAGTCC	59.484	45.833	10.45	0.00	45.82	3.85
830	927	5.368989	CCACAAAGACTTTCTACAAGTCCT	58.631	41.667	10.45	0.00	45.82	3.85
831	928	5.237344	CCACAAAGACTTTCTACAAGTCCTG	59.763	44.000	10.45	10.56	45.82	3.86
832	929	4.816925	ACAAAGACTTTCTACAAGTCCTGC	59.183	41.667	10.45	0.00	45.82	4.85
833	930	4.965200	AAGACTTTCTACAAGTCCTGCT	57.035	40.909	10.45	0.00	45.82	4.24
834	931	4.965200	AGACTTTCTACAAGTCCTGCTT	57.035	40.909	10.45	0.00	45.82	3.91
835	932	6.420913	AAGACTTTCTACAAGTCCTGCTTA	57.579	37.500	10.45	0.00	45.82	3.09
836	933	5.785243	AGACTTTCTACAAGTCCTGCTTAC	58.215	41.667	10.45	0.00	45.82	2.34
837	934	5.304614	AGACTTTCTACAAGTCCTGCTTACA	59.695	40.000	10.45	0.00	45.82	2.41
975	1094	3.071206	GCAGGAGGAGGCGACAGA	61.071	66.667	0.00	0.00	0.00	3.41
976	1095	2.888863	CAGGAGGAGGCGACAGAC	59.111	66.667	0.00	0.00	0.00	3.51
977	1096	1.979155	CAGGAGGAGGCGACAGACA	60.979	63.158	0.00	0.00	0.00	3.41
978	1097	1.680651	AGGAGGAGGCGACAGACAG	60.681	63.158	0.00	0.00	0.00	3.51
979	1098	2.716017	GGAGGAGGCGACAGACAGG	61.716	68.421	0.00	0.00	0.00	4.00
980	1099	1.979693	GAGGAGGCGACAGACAGGT	60.980	63.158	0.00	0.00	0.00	4.00
1065	1224	2.116125	AACTCCTGTTGCCTGGCC	59.884	61.111	17.53	0.00	34.71	5.36
1120	1291	1.078426	CGGCTAGGGTTCTTGGTGG	60.078	63.158	0.00	0.00	0.00	4.61
1188	1359	2.517402	GTTGGTGCGGGTTGGTCA	60.517	61.111	0.00	0.00	0.00	4.02
1191	1362	2.668550	GGTGCGGGTTGGTCAGAC	60.669	66.667	0.00	0.00	0.00	3.51
1195	1366	2.584391	GCGGGTTGGTCAGACCTCT	61.584	63.158	20.82	0.00	39.58	3.69
1227	1398	2.214920	CCCGGGGGCTCTGTATACC	61.215	68.421	14.71	0.00	0.00	2.73
1263	1438	0.596859	GCCGGCGACTGGTAATCTAC	60.597	60.000	12.58	0.00	0.00	2.59
1292	1467	3.727079	GCGTGATTTTGCTCACTCAGATG	60.727	47.826	2.77	0.00	42.73	2.90
1383	1566	1.136336	GTGATGCGTCCAGTTCGTTTC	60.136	52.381	2.83	0.00	0.00	2.78
1401	1584	4.261322	CGTTTCCATCTTATCAATGGGCTG	60.261	45.833	2.51	0.00	43.30	4.85
1403	1586	1.891150	CCATCTTATCAATGGGCTGCC	59.109	52.381	11.05	11.05	40.07	4.85
1405	1588	0.179020	TCTTATCAATGGGCTGCCGG	60.179	55.000	13.40	0.00	0.00	6.13
1430	1627	1.352352	GGCTGCCTATGGTGTATGGAT	59.648	52.381	12.43	0.00	0.00	3.41
1436	1633	3.006967	GCCTATGGTGTATGGATCGTTCT	59.993	47.826	0.00	0.00	0.00	3.01
1443	1640	4.439057	GTGTATGGATCGTTCTTTAGCCA	58.561	43.478	0.00	0.00	0.00	4.75
1474	1671	1.032794	ACGGCGCTCTGATCAAGATA	58.967	50.000	6.90	0.00	33.29	1.98
1477	1674	1.269988	GGCGCTCTGATCAAGATAGCA	60.270	52.381	7.64	0.00	38.33	3.49
1485	1682	6.728089	TCTGATCAAGATAGCACAGATTCT	57.272	37.500	0.00	0.00	31.02	2.40
1489	1686	5.665916	TCAAGATAGCACAGATTCTGACA	57.334	39.130	20.33	2.71	35.18	3.58
1510	1707	2.566833	TTCAGCATGCAAGTAGTGGT	57.433	45.000	21.98	0.00	34.76	4.16
1535	1732	2.048222	ACGCGAGTGTGGGTCATG	60.048	61.111	15.93	0.00	46.97	3.07
1547	1744	3.221771	GTGGGTCATGCCATTATAGCAA	58.778	45.455	8.20	0.00	44.83	3.91
1562	1759	0.896940	AGCAACATGGCCTGGAGTTG	60.897	55.000	19.08	19.08	43.04	3.16
1565	1762	0.896940	AACATGGCCTGGAGTTGCAG	60.897	55.000	3.32	0.00	0.00	4.41
1566	1763	2.050350	CATGGCCTGGAGTTGCAGG	61.050	63.158	14.62	14.62	41.38	4.85
1567	1764	2.233566	ATGGCCTGGAGTTGCAGGA	61.234	57.895	22.02	3.86	40.95	3.86
1568	1765	1.578215	ATGGCCTGGAGTTGCAGGAT	61.578	55.000	22.02	6.02	40.95	3.24
1569	1766	0.913934	TGGCCTGGAGTTGCAGGATA	60.914	55.000	22.02	7.84	40.95	2.59
1570	1767	0.475906	GGCCTGGAGTTGCAGGATAT	59.524	55.000	22.02	0.00	40.95	1.63
1571	1768	1.602311	GCCTGGAGTTGCAGGATATG	58.398	55.000	22.02	0.00	40.95	1.78
1572	1769	1.816961	GCCTGGAGTTGCAGGATATGG	60.817	57.143	22.02	0.00	40.95	2.74
1573	1770	1.770658	CCTGGAGTTGCAGGATATGGA	59.229	52.381	13.83	0.00	40.95	3.41
1574	1771	2.173356	CCTGGAGTTGCAGGATATGGAA	59.827	50.000	13.83	0.00	40.95	3.53
1575	1772	3.181436	CCTGGAGTTGCAGGATATGGAAT	60.181	47.826	13.83	0.00	41.68	3.01
1576	1773	4.467769	CTGGAGTTGCAGGATATGGAATT	58.532	43.478	0.00	0.00	41.68	2.17
1577	1774	4.464008	TGGAGTTGCAGGATATGGAATTC	58.536	43.478	0.00	0.00	42.77	2.17
1578	1775	3.499918	GGAGTTGCAGGATATGGAATTCG	59.500	47.826	0.00	0.00	43.90	3.34
1579	1776	4.380531	GAGTTGCAGGATATGGAATTCGA	58.619	43.478	0.00	0.00	41.68	3.71
1580	1777	4.978099	AGTTGCAGGATATGGAATTCGAT	58.022	39.130	8.12	8.12	41.68	3.59
1581	1778	4.758674	AGTTGCAGGATATGGAATTCGATG	59.241	41.667	12.73	0.00	41.68	3.84
1587	1784	1.511850	TATGGAATTCGATGCCTGCG	58.488	50.000	12.73	0.00	0.00	5.18
1620	1818	0.679505	AGAGCTCTGTGGTTTGCGTA	59.320	50.000	17.42	0.00	0.00	4.42
1625	1823	0.753867	TCTGTGGTTTGCGTAGTGGA	59.246	50.000	0.00	0.00	0.00	4.02
1652	1850	7.862274	ATTCCTGACTCAACTGATATATCCA	57.138	36.000	10.25	0.00	0.00	3.41
1659	1857	7.067496	ACTCAACTGATATATCCATTCGGTT	57.933	36.000	10.25	1.32	39.04	4.44
1679	1877	4.290155	GTTTTGTGTCTGCCTTATGTGTG	58.710	43.478	0.00	0.00	0.00	3.82
1689	1887	4.018490	TGCCTTATGTGTGATGAGCAAAT	58.982	39.130	0.00	0.00	0.00	2.32
1696	1894	9.669353	CTTATGTGTGATGAGCAAATATTAACC	57.331	33.333	0.00	0.00	0.00	2.85
1697	1895	6.449635	TGTGTGATGAGCAAATATTAACCC	57.550	37.500	0.00	0.00	0.00	4.11
1698	1896	5.359576	TGTGTGATGAGCAAATATTAACCCC	59.640	40.000	0.00	0.00	0.00	4.95
1699	1897	5.594317	GTGTGATGAGCAAATATTAACCCCT	59.406	40.000	0.00	0.00	0.00	4.79
1700	1898	6.096846	GTGTGATGAGCAAATATTAACCCCTT	59.903	38.462	0.00	0.00	0.00	3.95
1701	1899	6.321181	TGTGATGAGCAAATATTAACCCCTTC	59.679	38.462	0.00	0.00	0.00	3.46
1702	1900	6.321181	GTGATGAGCAAATATTAACCCCTTCA	59.679	38.462	0.00	0.00	0.00	3.02
1703	1901	6.894654	TGATGAGCAAATATTAACCCCTTCAA	59.105	34.615	0.00	0.00	0.00	2.69
1704	1902	6.773976	TGAGCAAATATTAACCCCTTCAAG	57.226	37.500	0.00	0.00	0.00	3.02
1705	1903	6.252995	TGAGCAAATATTAACCCCTTCAAGT	58.747	36.000	0.00	0.00	0.00	3.16
1706	1904	6.152661	TGAGCAAATATTAACCCCTTCAAGTG	59.847	38.462	0.00	0.00	0.00	3.16
1707	1905	5.422012	AGCAAATATTAACCCCTTCAAGTGG	59.578	40.000	0.00	0.00	0.00	4.00
1708	1906	5.186992	GCAAATATTAACCCCTTCAAGTGGT	59.813	40.000	0.00	0.00	0.00	4.16
1709	1907	6.295632	GCAAATATTAACCCCTTCAAGTGGTT	60.296	38.462	9.47	9.47	44.31	3.67
1710	1908	7.320399	CAAATATTAACCCCTTCAAGTGGTTC	58.680	38.462	7.68	0.00	41.34	3.62
1711	1909	3.955524	TTAACCCCTTCAAGTGGTTCA	57.044	42.857	7.68	0.00	41.34	3.18
1712	1910	2.838637	AACCCCTTCAAGTGGTTCAA	57.161	45.000	0.00	0.00	37.88	2.69
1713	1911	3.328535	AACCCCTTCAAGTGGTTCAAT	57.671	42.857	0.00	0.00	37.88	2.57
1714	1912	2.876581	ACCCCTTCAAGTGGTTCAATC	58.123	47.619	0.00	0.00	0.00	2.67
1715	1913	2.447047	ACCCCTTCAAGTGGTTCAATCT	59.553	45.455	0.00	0.00	0.00	2.40
1716	1914	2.821969	CCCCTTCAAGTGGTTCAATCTG	59.178	50.000	0.00	0.00	0.00	2.90
1717	1915	3.498481	CCCCTTCAAGTGGTTCAATCTGA	60.498	47.826	0.00	0.00	0.00	3.27
1718	1916	4.144297	CCCTTCAAGTGGTTCAATCTGAA	58.856	43.478	0.00	0.00	33.32	3.02
1727	1925	7.636150	AGTGGTTCAATCTGAAATAGGAATG	57.364	36.000	0.00	0.00	38.22	2.67
1741	1939	3.105959	AGGAATGAAGGGGTTCCATTG	57.894	47.619	6.88	0.00	45.03	2.82
1746	1944	5.660864	GGAATGAAGGGGTTCCATTGAATAA	59.339	40.000	0.00	0.00	42.72	1.40
1768	1968	1.161843	AACACGGTTTGGCTTATCCG	58.838	50.000	0.00	0.00	46.98	4.18
1783	1983	6.998074	TGGCTTATCCGTTCTCATGAATTAAT	59.002	34.615	0.00	0.00	37.80	1.40
1787	1987	5.991328	TCCGTTCTCATGAATTAATGCTC	57.009	39.130	0.00	0.00	34.40	4.26
1951	2156	0.164647	CTCGTCTGCTTTGCTTTCGG	59.835	55.000	0.00	0.00	0.00	4.30
1952	2157	0.531974	TCGTCTGCTTTGCTTTCGGT	60.532	50.000	0.00	0.00	0.00	4.69
1954	2159	0.238553	GTCTGCTTTGCTTTCGGTCC	59.761	55.000	0.00	0.00	0.00	4.46
2034	2242	7.923344	AGTTCATTATTCTGATGTCTCTAACCG	59.077	37.037	0.00	0.00	0.00	4.44
2124	2332	0.318699	TGTTCTCCACGAGCGTTCTG	60.319	55.000	0.00	0.00	0.00	3.02
2259	2470	3.409026	AGGACAACCTGACAGATTGAC	57.591	47.619	16.80	9.95	45.92	3.18
2295	2506	2.973694	ACAATTCATTCATGCCCAGC	57.026	45.000	0.00	0.00	0.00	4.85
2353	2564	8.548721	GGAATGTACGAAAGAGTAATATTGTGG	58.451	37.037	0.00	0.00	0.00	4.17
2427	2638	7.833682	TCCCACATGCTAGAAAAATCATCTTAA	59.166	33.333	0.00	0.00	0.00	1.85
2441	2652	4.676546	TCATCTTAAGAGTCGATGCACAG	58.323	43.478	11.53	0.00	35.64	3.66
2462	2673	7.362401	GCACAGAAAGATTGGTCTGATTGTATT	60.362	37.037	7.63	0.00	43.32	1.89
2477	2688	2.549926	TGTATTGACATGCACGCCTAG	58.450	47.619	0.00	0.00	0.00	3.02
2518	2729	3.282021	GGAGGTTATTGAGCAGCATCAA	58.718	45.455	9.00	9.00	43.04	2.57
2532	2743	2.841881	AGCATCAAATTGCCATCCCTTT	59.158	40.909	0.00	0.00	43.83	3.11
2663	2874	5.253330	GTTTGTTATCCTCCTCAATCACCA	58.747	41.667	0.00	0.00	0.00	4.17
2674	2885	2.349590	TCAATCACCATGAGCAAGTCG	58.650	47.619	0.00	0.00	0.00	4.18
2706	2921	1.261619	CCACTGACGTTCTTGTGCTTC	59.738	52.381	0.00	0.00	0.00	3.86
2851	3066	9.543231	TCTCTTTCCTTTGGAGAAGTAGTAATA	57.457	33.333	0.00	0.00	33.82	0.98
2867	3120	8.213518	AGTAGTAATATGGCAATCACAACTTG	57.786	34.615	0.00	0.00	0.00	3.16
2875	3128	2.028748	GCAATCACAACTTGGGATGCTT	60.029	45.455	7.31	0.00	40.14	3.91
3127	3380	2.434185	TGGTAAAGGCTCGCGCAG	60.434	61.111	8.75	5.26	38.10	5.18
3155	3408	2.831565	AGGAGTGCCTGAGAGAAGAAT	58.168	47.619	0.00	0.00	44.90	2.40
3170	3423	4.775236	AGAAGAATGCCTGTTAGGATGTC	58.225	43.478	0.00	0.00	37.67	3.06
3211	3464	0.608640	AGGGAGCTAACGTGGAACTG	59.391	55.000	0.00	0.00	31.75	3.16
3212	3465	0.320697	GGGAGCTAACGTGGAACTGT	59.679	55.000	0.00	0.00	31.75	3.55
3307	3560	2.147958	GTTGGTAATCCGTGCTGAACA	58.852	47.619	0.00	0.00	36.30	3.18
3325	3578	4.629634	TGAACAGGTCGTGTAAAGCATATG	59.370	41.667	0.00	0.00	39.03	1.78
3336	3589	1.229428	AAGCATATGTGATTCGGCGG	58.771	50.000	7.21	0.00	0.00	6.13
3407	3660	1.093159	CCAGAATCTGCACTTGGAGC	58.907	55.000	4.40	0.00	33.17	4.70
3514	3768	4.270808	GCCTCAATTCTTTGGTTGTTTGTG	59.729	41.667	0.00	0.00	33.44	3.33
3515	3769	5.418676	CCTCAATTCTTTGGTTGTTTGTGT	58.581	37.500	0.00	0.00	33.44	3.72
3516	3770	5.291614	CCTCAATTCTTTGGTTGTTTGTGTG	59.708	40.000	0.00	0.00	33.44	3.82
3517	3771	5.788450	TCAATTCTTTGGTTGTTTGTGTGT	58.212	33.333	0.00	0.00	33.44	3.72
3518	3772	5.636965	TCAATTCTTTGGTTGTTTGTGTGTG	59.363	36.000	0.00	0.00	33.44	3.82
3519	3773	4.855715	TTCTTTGGTTGTTTGTGTGTGA	57.144	36.364	0.00	0.00	0.00	3.58
3520	3774	5.398603	TTCTTTGGTTGTTTGTGTGTGAT	57.601	34.783	0.00	0.00	0.00	3.06
3521	3775	4.992688	TCTTTGGTTGTTTGTGTGTGATC	58.007	39.130	0.00	0.00	0.00	2.92
3544	3798	5.635280	TCGTGTGATCTTCAGAGAACATTTC	59.365	40.000	0.00	0.00	37.10	2.17
3620	3879	8.865090	AGATAACATATTTTGGTTGTTTGTGGA	58.135	29.630	0.00	0.00	35.37	4.02
3627	3886	2.582052	TGGTTGTTTGTGGATGGTCTC	58.418	47.619	0.00	0.00	0.00	3.36
3657	3916	3.784701	TGATAGAAGCAACGGTCTCTC	57.215	47.619	0.00	0.00	0.00	3.20
3721	3981	5.371115	ACTGCTAAAATAAGAAGCGCAAA	57.629	34.783	11.47	0.00	39.14	3.68
3755	4015	2.231478	GAGGTCTCTCGTTGTCCATCAA	59.769	50.000	0.00	0.00	0.00	2.57
3768	4028	2.289002	GTCCATCAATCCATCTGTTCGC	59.711	50.000	0.00	0.00	0.00	4.70
3798	4058	3.624777	TCATCATTTGGAAAGCTCCCTC	58.375	45.455	6.66	0.00	41.64	4.30
3801	4061	1.470098	CATTTGGAAAGCTCCCTCACG	59.530	52.381	6.66	0.00	41.64	4.35
3819	4079	3.007074	TCACGCCAGGAAATTGTGTACTA	59.993	43.478	0.00	0.00	32.55	1.82
3822	4082	4.221262	ACGCCAGGAAATTGTGTACTACTA	59.779	41.667	0.00	0.00	0.00	1.82
3824	4084	5.623824	CGCCAGGAAATTGTGTACTACTACT	60.624	44.000	0.00	0.00	0.00	2.57
3836	4096	6.015180	TGTGTACTACTACTTCCGTCCAAAAT	60.015	38.462	0.00	0.00	0.00	1.82
3837	4097	6.529477	GTGTACTACTACTTCCGTCCAAAATC	59.471	42.308	0.00	0.00	0.00	2.17
3864	4124	5.908341	TGTTGGAACACTTATTTTTGGGAC	58.092	37.500	0.00	0.00	39.29	4.46
3874	4134	1.732117	TTTTTGGGACGGAGGGAGTA	58.268	50.000	0.00	0.00	0.00	2.59
3877	4137	1.002069	TTGGGACGGAGGGAGTACTA	58.998	55.000	0.00	0.00	0.00	1.82
3880	4140	1.387539	GGACGGAGGGAGTACTACAC	58.612	60.000	7.57	0.02	0.00	2.90
3882	4142	2.440409	GACGGAGGGAGTACTACACAA	58.560	52.381	7.57	0.00	0.00	3.33
3887	4147	4.868734	CGGAGGGAGTACTACACAATTTTC	59.131	45.833	7.57	0.00	0.00	2.29
3932	4193	9.071276	ACTCTCTGCATTCATTAAGAAGAAAAA	57.929	29.630	0.00	0.00	40.15	1.94
3933	4194	9.557338	CTCTCTGCATTCATTAAGAAGAAAAAG	57.443	33.333	0.00	0.00	40.15	2.27
3937	4198	6.269769	TGCATTCATTAAGAAGAAAAAGGGGT	59.730	34.615	0.00	0.00	40.15	4.95
4001	4263	5.712084	AGCATATGAATCATGGATAGGCT	57.288	39.130	6.97	1.46	35.46	4.58
4015	4277	9.492730	TCATGGATAGGCTGAAATATCTATACA	57.507	33.333	0.00	0.00	37.42	2.29
4016	4278	9.761504	CATGGATAGGCTGAAATATCTATACAG	57.238	37.037	0.00	0.00	36.74	2.74
4017	4279	8.311395	TGGATAGGCTGAAATATCTATACAGG	57.689	38.462	0.00	0.00	30.55	4.00
4023	4285	5.997746	GCTGAAATATCTATACAGGCAACCA	59.002	40.000	0.00	0.00	37.17	3.67
4024	4286	6.486657	GCTGAAATATCTATACAGGCAACCAA	59.513	38.462	0.00	0.00	37.17	3.67
4025	4287	7.308229	GCTGAAATATCTATACAGGCAACCAAG	60.308	40.741	0.00	0.00	37.17	3.61
4098	7963	0.031585	GAAAGGGCGTGGGTTCAAAC	59.968	55.000	0.00	0.00	0.00	2.93
4112	7977	0.465460	TCAAACCCCACAGCTGTCAC	60.465	55.000	18.64	0.00	0.00	3.67
4113	7978	0.751277	CAAACCCCACAGCTGTCACA	60.751	55.000	18.64	0.00	0.00	3.58
4114	7979	0.185901	AAACCCCACAGCTGTCACAT	59.814	50.000	18.64	0.00	0.00	3.21
4115	7980	1.064003	AACCCCACAGCTGTCACATA	58.936	50.000	18.64	0.00	0.00	2.29

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	2.180276	ACCCATTTGAGCGAGAGTAGT	58.820	47.619	0.00	0.00	0.00	2.73
1	2	2.969628	ACCCATTTGAGCGAGAGTAG	57.030	50.000	0.00	0.00	0.00	2.57
2	3	3.512329	TGTAACCCATTTGAGCGAGAGTA	59.488	43.478	0.00	0.00	0.00	2.59
3	4	2.301870	TGTAACCCATTTGAGCGAGAGT	59.698	45.455	0.00	0.00	0.00	3.24
4	5	2.972625	TGTAACCCATTTGAGCGAGAG	58.027	47.619	0.00	0.00	0.00	3.20
5	6	3.627395	ATGTAACCCATTTGAGCGAGA	57.373	42.857	0.00	0.00	0.00	4.04
6	7	3.560068	GGTATGTAACCCATTTGAGCGAG	59.440	47.826	0.00	0.00	43.16	5.03
7	8	3.537580	GGTATGTAACCCATTTGAGCGA	58.462	45.455	0.00	0.00	43.16	4.93
8	9	3.963383	GGTATGTAACCCATTTGAGCG	57.037	47.619	0.00	0.00	43.16	5.03
19	20	3.646637	AGCCAGTCCCATAGGTATGTAAC	59.353	47.826	0.00	0.00	31.82	2.50
20	21	3.936461	AGCCAGTCCCATAGGTATGTAA	58.064	45.455	0.00	0.00	31.82	2.41
21	22	3.630625	AGCCAGTCCCATAGGTATGTA	57.369	47.619	0.00	0.00	31.82	2.29
22	23	2.496679	AGCCAGTCCCATAGGTATGT	57.503	50.000	0.00	0.00	31.82	2.29
23	24	3.511477	ACTAGCCAGTCCCATAGGTATG	58.489	50.000	0.00	0.00	0.00	2.39
24	25	3.925261	ACTAGCCAGTCCCATAGGTAT	57.075	47.619	0.00	0.00	0.00	2.73
25	26	3.700863	AACTAGCCAGTCCCATAGGTA	57.299	47.619	0.00	0.00	32.29	3.08
26	27	2.570386	AACTAGCCAGTCCCATAGGT	57.430	50.000	0.00	0.00	32.29	3.08
27	28	3.933861	AAAACTAGCCAGTCCCATAGG	57.066	47.619	0.00	0.00	32.29	2.57
28	29	4.809426	CGTAAAAACTAGCCAGTCCCATAG	59.191	45.833	0.00	0.00	32.29	2.23
29	30	4.223477	ACGTAAAAACTAGCCAGTCCCATA	59.777	41.667	0.00	0.00	32.29	2.74
30	31	3.008704	ACGTAAAAACTAGCCAGTCCCAT	59.991	43.478	0.00	0.00	32.29	4.00
31	32	2.369532	ACGTAAAAACTAGCCAGTCCCA	59.630	45.455	0.00	0.00	32.29	4.37
32	33	3.049708	ACGTAAAAACTAGCCAGTCCC	57.950	47.619	0.00	0.00	32.29	4.46
33	34	3.187842	CCAACGTAAAAACTAGCCAGTCC	59.812	47.826	0.00	0.00	32.29	3.85
34	35	3.364664	GCCAACGTAAAAACTAGCCAGTC	60.365	47.826	0.00	0.00	32.29	3.51
35	36	2.551032	GCCAACGTAAAAACTAGCCAGT	59.449	45.455	0.00	0.00	36.19	4.00
36	37	2.812011	AGCCAACGTAAAAACTAGCCAG	59.188	45.455	0.00	0.00	0.00	4.85
37	38	2.809696	GAGCCAACGTAAAAACTAGCCA	59.190	45.455	0.00	0.00	0.00	4.75
38	39	2.159747	CGAGCCAACGTAAAAACTAGCC	60.160	50.000	0.00	0.00	0.00	3.93
39	40	2.723923	GCGAGCCAACGTAAAAACTAGC	60.724	50.000	0.00	0.00	35.59	3.42
40	41	2.159747	GGCGAGCCAACGTAAAAACTAG	60.160	50.000	9.58	0.00	35.81	2.57
41	42	1.799994	GGCGAGCCAACGTAAAAACTA	59.200	47.619	9.58	0.00	35.81	2.24
42	43	0.589708	GGCGAGCCAACGTAAAAACT	59.410	50.000	9.58	0.00	35.81	2.66
43	44	0.308376	TGGCGAGCCAACGTAAAAAC	59.692	50.000	15.24	0.00	44.12	2.43
44	45	2.704108	TGGCGAGCCAACGTAAAAA	58.296	47.368	15.24	0.00	44.12	1.94
45	46	4.458666	TGGCGAGCCAACGTAAAA	57.541	50.000	15.24	0.00	44.12	1.52
56	57	1.009829	GTTGTGATAGGCTTGGCGAG	58.990	55.000	0.00	0.00	0.00	5.03
57	58	0.392461	GGTTGTGATAGGCTTGGCGA	60.392	55.000	0.00	0.00	0.00	5.54
58	59	1.376609	GGGTTGTGATAGGCTTGGCG	61.377	60.000	0.00	0.00	0.00	5.69
59	60	0.034089	AGGGTTGTGATAGGCTTGGC	60.034	55.000	0.00	0.00	0.00	4.52
60	61	1.408822	GGAGGGTTGTGATAGGCTTGG	60.409	57.143	0.00	0.00	0.00	3.61
61	62	1.561542	AGGAGGGTTGTGATAGGCTTG	59.438	52.381	0.00	0.00	0.00	4.01
62	63	1.840635	GAGGAGGGTTGTGATAGGCTT	59.159	52.381	0.00	0.00	0.00	4.35
63	64	1.501582	GAGGAGGGTTGTGATAGGCT	58.498	55.000	0.00	0.00	0.00	4.58
64	65	0.470341	GGAGGAGGGTTGTGATAGGC	59.530	60.000	0.00	0.00	0.00	3.93
65	66	2.182516	AGGAGGAGGGTTGTGATAGG	57.817	55.000	0.00	0.00	0.00	2.57
66	67	4.141688	GGTAAAGGAGGAGGGTTGTGATAG	60.142	50.000	0.00	0.00	0.00	2.08
67	68	3.778629	GGTAAAGGAGGAGGGTTGTGATA	59.221	47.826	0.00	0.00	0.00	2.15
68	69	2.576648	GGTAAAGGAGGAGGGTTGTGAT	59.423	50.000	0.00	0.00	0.00	3.06
69	70	1.982958	GGTAAAGGAGGAGGGTTGTGA	59.017	52.381	0.00	0.00	0.00	3.58
70	71	1.004394	GGGTAAAGGAGGAGGGTTGTG	59.996	57.143	0.00	0.00	0.00	3.33
71	72	1.369403	GGGTAAAGGAGGAGGGTTGT	58.631	55.000	0.00	0.00	0.00	3.32
72	73	0.252197	CGGGTAAAGGAGGAGGGTTG	59.748	60.000	0.00	0.00	0.00	3.77
73	74	0.912968	CCGGGTAAAGGAGGAGGGTT	60.913	60.000	0.00	0.00	0.00	4.11
74	75	1.306739	CCGGGTAAAGGAGGAGGGT	60.307	63.158	0.00	0.00	0.00	4.34
75	76	2.070650	CCCGGGTAAAGGAGGAGGG	61.071	68.421	14.18	0.00	0.00	4.30
76	77	2.743179	GCCCGGGTAAAGGAGGAGG	61.743	68.421	24.63	0.00	0.00	4.30
77	78	1.272554	AAGCCCGGGTAAAGGAGGAG	61.273	60.000	24.63	0.00	0.00	3.69
78	79	1.229723	AAGCCCGGGTAAAGGAGGA	60.230	57.895	24.63	0.00	0.00	3.71
79	80	1.077716	CAAGCCCGGGTAAAGGAGG	60.078	63.158	24.63	0.00	0.00	4.30
80	81	1.077716	CCAAGCCCGGGTAAAGGAG	60.078	63.158	24.63	5.31	0.00	3.69
81	82	2.608550	CCCAAGCCCGGGTAAAGGA	61.609	63.158	24.63	0.00	41.83	3.36
82	83	2.044352	CCCAAGCCCGGGTAAAGG	60.044	66.667	24.63	18.41	41.83	3.11
91	92	3.489513	ATAGCCGGTCCCAAGCCC	61.490	66.667	1.90	0.00	0.00	5.19
92	93	2.203209	CATAGCCGGTCCCAAGCC	60.203	66.667	1.90	0.00	0.00	4.35
93	94	2.902343	GCATAGCCGGTCCCAAGC	60.902	66.667	1.90	0.00	0.00	4.01
94	95	2.203209	GGCATAGCCGGTCCCAAG	60.203	66.667	1.90	0.00	39.62	3.61
110	111	2.588620	ACTCCGCCTATGTCTTCTAGG	58.411	52.381	0.00	0.00	39.06	3.02
111	112	4.657436	AAACTCCGCCTATGTCTTCTAG	57.343	45.455	0.00	0.00	0.00	2.43
112	113	6.534475	TTTAAACTCCGCCTATGTCTTCTA	57.466	37.500	0.00	0.00	0.00	2.10
113	114	5.416271	TTTAAACTCCGCCTATGTCTTCT	57.584	39.130	0.00	0.00	0.00	2.85
114	115	5.236695	GGATTTAAACTCCGCCTATGTCTTC	59.763	44.000	0.00	0.00	0.00	2.87
115	116	5.104485	AGGATTTAAACTCCGCCTATGTCTT	60.104	40.000	9.58	0.00	37.88	3.01
116	117	4.409247	AGGATTTAAACTCCGCCTATGTCT	59.591	41.667	9.58	0.00	37.88	3.41
117	118	4.704965	AGGATTTAAACTCCGCCTATGTC	58.295	43.478	9.58	0.00	37.88	3.06
118	119	4.772886	AGGATTTAAACTCCGCCTATGT	57.227	40.909	9.58	0.00	37.88	2.29
119	120	4.691216	GCTAGGATTTAAACTCCGCCTATG	59.309	45.833	9.58	0.00	37.88	2.23
120	121	4.593634	AGCTAGGATTTAAACTCCGCCTAT	59.406	41.667	9.58	0.00	37.88	2.57
121	122	3.965347	AGCTAGGATTTAAACTCCGCCTA	59.035	43.478	9.58	0.00	37.88	3.93
122	123	2.772515	AGCTAGGATTTAAACTCCGCCT	59.227	45.455	9.58	0.00	37.88	5.52
123	124	3.132160	GAGCTAGGATTTAAACTCCGCC	58.868	50.000	9.58	0.00	37.88	6.13
124	125	3.556365	GTGAGCTAGGATTTAAACTCCGC	59.444	47.826	9.58	8.57	37.88	5.54
125	126	4.806247	CAGTGAGCTAGGATTTAAACTCCG	59.194	45.833	9.58	0.00	37.88	4.63
126	127	5.735766	ACAGTGAGCTAGGATTTAAACTCC	58.264	41.667	0.00	8.01	0.00	3.85
127	128	8.773404	TTAACAGTGAGCTAGGATTTAAACTC	57.227	34.615	0.00	0.00	0.00	3.01
128	129	9.000486	GTTTAACAGTGAGCTAGGATTTAAACT	58.000	33.333	17.25	0.00	36.18	2.66
129	130	8.780249	TGTTTAACAGTGAGCTAGGATTTAAAC	58.220	33.333	17.48	17.48	38.09	2.01
130	131	8.911918	TGTTTAACAGTGAGCTAGGATTTAAA	57.088	30.769	0.00	0.00	0.00	1.52
131	132	9.515226	AATGTTTAACAGTGAGCTAGGATTTAA	57.485	29.630	3.63	0.00	0.00	1.52
132	133	9.515226	AAATGTTTAACAGTGAGCTAGGATTTA	57.485	29.630	3.63	0.00	0.00	1.40
133	134	8.409358	AAATGTTTAACAGTGAGCTAGGATTT	57.591	30.769	3.63	0.00	0.00	2.17
134	135	8.409358	AAAATGTTTAACAGTGAGCTAGGATT	57.591	30.769	3.63	0.00	0.00	3.01
135	136	9.515226	TTAAAATGTTTAACAGTGAGCTAGGAT	57.485	29.630	3.63	0.00	0.00	3.24
136	137	8.780249	GTTAAAATGTTTAACAGTGAGCTAGGA	58.220	33.333	15.40	0.00	35.54	2.94
137	138	8.021396	GGTTAAAATGTTTAACAGTGAGCTAGG	58.979	37.037	19.75	0.00	36.79	3.02
138	139	8.564574	TGGTTAAAATGTTTAACAGTGAGCTAG	58.435	33.333	19.75	0.00	36.79	3.42
139	140	8.453238	TGGTTAAAATGTTTAACAGTGAGCTA	57.547	30.769	19.75	0.00	36.79	3.32
140	141	7.341445	TGGTTAAAATGTTTAACAGTGAGCT	57.659	32.000	19.75	0.00	36.79	4.09
141	142	7.359181	GCATGGTTAAAATGTTTAACAGTGAGC	60.359	37.037	19.75	13.61	36.79	4.26
142	143	7.651304	TGCATGGTTAAAATGTTTAACAGTGAG	59.349	33.333	19.75	9.51	36.79	3.51
143	144	7.492524	TGCATGGTTAAAATGTTTAACAGTGA	58.507	30.769	19.75	6.29	36.79	3.41
144	145	7.706281	TGCATGGTTAAAATGTTTAACAGTG	57.294	32.000	19.75	17.49	36.79	3.66
145	146	8.900983	AATGCATGGTTAAAATGTTTAACAGT	57.099	26.923	19.75	0.00	36.79	3.55
150	151	9.209175	GGTGTAAATGCATGGTTAAAATGTTTA	57.791	29.630	0.00	0.00	0.00	2.01
151	152	7.936301	AGGTGTAAATGCATGGTTAAAATGTTT	59.064	29.630	0.00	0.00	0.00	2.83
152	153	7.449247	AGGTGTAAATGCATGGTTAAAATGTT	58.551	30.769	0.00	0.00	0.00	2.71
153	154	7.003402	AGGTGTAAATGCATGGTTAAAATGT	57.997	32.000	0.00	0.00	0.00	2.71
154	155	8.465999	TCTAGGTGTAAATGCATGGTTAAAATG	58.534	33.333	0.00	0.00	0.00	2.32
155	156	8.588290	TCTAGGTGTAAATGCATGGTTAAAAT	57.412	30.769	0.00	0.00	0.00	1.82
156	157	7.362574	GCTCTAGGTGTAAATGCATGGTTAAAA	60.363	37.037	0.00	0.00	0.00	1.52
157	158	6.094881	GCTCTAGGTGTAAATGCATGGTTAAA	59.905	38.462	0.00	0.00	0.00	1.52
158	159	5.588648	GCTCTAGGTGTAAATGCATGGTTAA	59.411	40.000	0.00	0.00	0.00	2.01
159	160	5.123227	GCTCTAGGTGTAAATGCATGGTTA	58.877	41.667	0.00	0.00	0.00	2.85
160	161	3.947834	GCTCTAGGTGTAAATGCATGGTT	59.052	43.478	0.00	0.00	0.00	3.67
161	162	3.545703	GCTCTAGGTGTAAATGCATGGT	58.454	45.455	0.00	0.00	0.00	3.55
162	163	2.545526	CGCTCTAGGTGTAAATGCATGG	59.454	50.000	0.00	0.00	0.00	3.66
163	164	2.032549	GCGCTCTAGGTGTAAATGCATG	60.033	50.000	0.00	0.00	0.00	4.06
164	165	2.213499	GCGCTCTAGGTGTAAATGCAT	58.787	47.619	0.00	0.00	0.00	3.96
165	166	1.651987	GCGCTCTAGGTGTAAATGCA	58.348	50.000	0.00	0.00	0.00	3.96
166	167	0.938008	GGCGCTCTAGGTGTAAATGC	59.062	55.000	7.64	0.00	0.00	3.56
167	168	2.604046	AGGCGCTCTAGGTGTAAATG	57.396	50.000	7.64	0.00	0.00	2.32
168	169	2.158943	GGAAGGCGCTCTAGGTGTAAAT	60.159	50.000	7.64	0.00	0.00	1.40
169	170	1.206371	GGAAGGCGCTCTAGGTGTAAA	59.794	52.381	7.64	0.00	0.00	2.01
170	171	0.822164	GGAAGGCGCTCTAGGTGTAA	59.178	55.000	7.64	0.00	0.00	2.41
171	172	1.041447	GGGAAGGCGCTCTAGGTGTA	61.041	60.000	7.64	0.00	0.00	2.90
172	173	2.359967	GGGAAGGCGCTCTAGGTGT	61.360	63.158	7.64	0.00	0.00	4.16
173	174	2.060980	AGGGAAGGCGCTCTAGGTG	61.061	63.158	7.64	0.00	30.49	4.00
174	175	2.060980	CAGGGAAGGCGCTCTAGGT	61.061	63.158	7.64	0.00	34.72	3.08
175	176	1.617947	AACAGGGAAGGCGCTCTAGG	61.618	60.000	7.64	0.00	34.72	3.02
176	177	1.112113	TAACAGGGAAGGCGCTCTAG	58.888	55.000	7.64	0.00	34.72	2.43
177	178	1.480954	CTTAACAGGGAAGGCGCTCTA	59.519	52.381	7.64	0.00	34.72	2.43
178	179	0.250513	CTTAACAGGGAAGGCGCTCT	59.749	55.000	7.64	0.00	34.72	4.09
179	180	0.249398	TCTTAACAGGGAAGGCGCTC	59.751	55.000	7.64	0.00	34.72	5.03
180	181	0.912486	ATCTTAACAGGGAAGGCGCT	59.088	50.000	7.64	0.00	37.88	5.92
181	182	1.017387	CATCTTAACAGGGAAGGCGC	58.983	55.000	0.00	0.00	0.00	6.53
182	183	1.017387	GCATCTTAACAGGGAAGGCG	58.983	55.000	0.00	0.00	0.00	5.52
183	184	2.019984	CAGCATCTTAACAGGGAAGGC	58.980	52.381	0.00	0.00	0.00	4.35
184	185	2.019984	GCAGCATCTTAACAGGGAAGG	58.980	52.381	0.00	0.00	0.00	3.46
185	186	2.681848	CAGCAGCATCTTAACAGGGAAG	59.318	50.000	0.00	0.00	0.00	3.46
186	187	2.040278	ACAGCAGCATCTTAACAGGGAA	59.960	45.455	0.00	0.00	0.00	3.97
187	188	1.630369	ACAGCAGCATCTTAACAGGGA	59.370	47.619	0.00	0.00	0.00	4.20
188	189	2.119801	ACAGCAGCATCTTAACAGGG	57.880	50.000	0.00	0.00	0.00	4.45
189	190	2.415090	GCAACAGCAGCATCTTAACAGG	60.415	50.000	0.00	0.00	0.00	4.00
190	191	2.486982	AGCAACAGCAGCATCTTAACAG	59.513	45.455	0.00	0.00	0.00	3.16
191	192	2.485426	GAGCAACAGCAGCATCTTAACA	59.515	45.455	0.00	0.00	0.00	2.41
192	193	2.475187	CGAGCAACAGCAGCATCTTAAC	60.475	50.000	0.00	0.00	0.00	2.01
193	194	1.733912	CGAGCAACAGCAGCATCTTAA	59.266	47.619	0.00	0.00	0.00	1.85
194	195	1.338105	ACGAGCAACAGCAGCATCTTA	60.338	47.619	0.00	0.00	0.00	2.10
195	196	0.604780	ACGAGCAACAGCAGCATCTT	60.605	50.000	0.00	0.00	0.00	2.40
196	197	1.004080	ACGAGCAACAGCAGCATCT	60.004	52.632	0.00	0.00	0.00	2.90
197	198	1.134075	CACGAGCAACAGCAGCATC	59.866	57.895	0.00	0.00	0.00	3.91
198	199	1.296755	CTCACGAGCAACAGCAGCAT	61.297	55.000	0.00	0.00	0.00	3.79
199	200	1.957695	CTCACGAGCAACAGCAGCA	60.958	57.895	0.00	0.00	0.00	4.41
200	201	2.675056	CCTCACGAGCAACAGCAGC	61.675	63.158	0.00	0.00	0.00	5.25
201	202	1.005748	TCCTCACGAGCAACAGCAG	60.006	57.895	0.00	0.00	0.00	4.24
202	203	1.300931	GTCCTCACGAGCAACAGCA	60.301	57.895	0.00	0.00	0.00	4.41
203	204	3.555428	GTCCTCACGAGCAACAGC	58.445	61.111	0.00	0.00	0.00	4.40
212	213	8.899570	GTGCTACCACTATTATCGTCCTCACG	62.900	50.000	0.00	0.00	41.96	4.35
213	214	4.277672	TGCTACCACTATTATCGTCCTCAC	59.722	45.833	0.00	0.00	0.00	3.51
214	215	4.277672	GTGCTACCACTATTATCGTCCTCA	59.722	45.833	0.00	0.00	38.93	3.86
215	216	4.613167	CGTGCTACCACTATTATCGTCCTC	60.613	50.000	0.00	0.00	39.86	3.71
216	217	3.252701	CGTGCTACCACTATTATCGTCCT	59.747	47.826	0.00	0.00	39.86	3.85
217	218	3.562505	CGTGCTACCACTATTATCGTCC	58.437	50.000	0.00	0.00	39.86	4.79
218	219	2.978489	GCGTGCTACCACTATTATCGTC	59.022	50.000	0.00	0.00	39.86	4.20
219	220	2.603892	CGCGTGCTACCACTATTATCGT	60.604	50.000	0.00	0.00	39.86	3.73
220	221	1.976728	CGCGTGCTACCACTATTATCG	59.023	52.381	0.00	0.00	39.86	2.92
221	222	2.325761	CCGCGTGCTACCACTATTATC	58.674	52.381	4.92	0.00	39.86	1.75
222	223	1.000506	CCCGCGTGCTACCACTATTAT	59.999	52.381	4.92	0.00	39.86	1.28
223	224	0.386476	CCCGCGTGCTACCACTATTA	59.614	55.000	4.92	0.00	39.86	0.98
224	225	1.143183	CCCGCGTGCTACCACTATT	59.857	57.895	4.92	0.00	39.86	1.73
225	226	2.812499	CCCGCGTGCTACCACTAT	59.188	61.111	4.92	0.00	39.86	2.12
226	227	4.137872	GCCCGCGTGCTACCACTA	62.138	66.667	6.24	0.00	39.86	2.74
240	241	2.438951	TATCGGATAAACGCCCGCCC	62.439	60.000	0.00	0.00	44.96	6.13
241	242	0.600782	TTATCGGATAAACGCCCGCC	60.601	55.000	7.96	0.00	44.96	6.13
242	243	0.509929	GTTATCGGATAAACGCCCGC	59.490	55.000	11.80	0.00	44.96	6.13
243	244	1.790623	CAGTTATCGGATAAACGCCCG	59.209	52.381	11.80	0.00	46.57	6.13
244	245	1.529865	GCAGTTATCGGATAAACGCCC	59.470	52.381	11.80	0.31	0.00	6.13
245	246	2.480845	AGCAGTTATCGGATAAACGCC	58.519	47.619	20.51	7.96	0.00	5.68
246	247	4.296690	AGTAGCAGTTATCGGATAAACGC	58.703	43.478	18.17	18.17	0.00	4.84
247	248	6.577800	CACTAGTAGCAGTTATCGGATAAACG	59.422	42.308	11.80	7.48	0.00	3.60
248	249	7.646314	TCACTAGTAGCAGTTATCGGATAAAC	58.354	38.462	11.80	6.70	0.00	2.01
249	250	7.812690	TCACTAGTAGCAGTTATCGGATAAA	57.187	36.000	11.80	0.00	0.00	1.40
250	251	7.812690	TTCACTAGTAGCAGTTATCGGATAA	57.187	36.000	6.35	6.35	0.00	1.75
251	252	7.812690	TTTCACTAGTAGCAGTTATCGGATA	57.187	36.000	0.00	0.00	0.00	2.59
252	253	6.710597	TTTCACTAGTAGCAGTTATCGGAT	57.289	37.500	0.00	0.00	0.00	4.18
253	254	6.519679	TTTTCACTAGTAGCAGTTATCGGA	57.480	37.500	0.00	0.00	0.00	4.55
254	255	6.255887	CCTTTTTCACTAGTAGCAGTTATCGG	59.744	42.308	0.00	0.00	0.00	4.18
255	256	6.812160	ACCTTTTTCACTAGTAGCAGTTATCG	59.188	38.462	0.00	0.00	0.00	2.92
256	257	7.817962	TCACCTTTTTCACTAGTAGCAGTTATC	59.182	37.037	0.00	0.00	0.00	1.75
257	258	7.676947	TCACCTTTTTCACTAGTAGCAGTTAT	58.323	34.615	0.00	0.00	0.00	1.89
258	259	7.058023	TCACCTTTTTCACTAGTAGCAGTTA	57.942	36.000	0.00	0.00	0.00	2.24
259	260	5.925509	TCACCTTTTTCACTAGTAGCAGTT	58.074	37.500	0.00	0.00	0.00	3.16
260	261	5.546621	TCACCTTTTTCACTAGTAGCAGT	57.453	39.130	0.00	0.00	0.00	4.40
261	262	8.443937	GTTATTCACCTTTTTCACTAGTAGCAG	58.556	37.037	0.00	0.00	0.00	4.24
262	263	7.117236	CGTTATTCACCTTTTTCACTAGTAGCA	59.883	37.037	0.00	0.00	0.00	3.49
263	264	7.330208	TCGTTATTCACCTTTTTCACTAGTAGC	59.670	37.037	0.00	0.00	0.00	3.58
264	265	8.645487	GTCGTTATTCACCTTTTTCACTAGTAG	58.355	37.037	0.00	0.00	0.00	2.57
265	266	7.326789	CGTCGTTATTCACCTTTTTCACTAGTA	59.673	37.037	0.00	0.00	0.00	1.82
266	267	6.145048	CGTCGTTATTCACCTTTTTCACTAGT	59.855	38.462	0.00	0.00	0.00	2.57
267	268	6.364165	TCGTCGTTATTCACCTTTTTCACTAG	59.636	38.462	0.00	0.00	0.00	2.57
268	269	6.144402	GTCGTCGTTATTCACCTTTTTCACTA	59.856	38.462	0.00	0.00	0.00	2.74
269	270	5.050567	GTCGTCGTTATTCACCTTTTTCACT	60.051	40.000	0.00	0.00	0.00	3.41
270	271	5.135330	GTCGTCGTTATTCACCTTTTTCAC	58.865	41.667	0.00	0.00	0.00	3.18
271	272	4.809958	TGTCGTCGTTATTCACCTTTTTCA	59.190	37.500	0.00	0.00	0.00	2.69
272	273	5.333046	TGTCGTCGTTATTCACCTTTTTC	57.667	39.130	0.00	0.00	0.00	2.29
273	274	5.934935	ATGTCGTCGTTATTCACCTTTTT	57.065	34.783	0.00	0.00	0.00	1.94
274	275	5.579511	CCTATGTCGTCGTTATTCACCTTTT	59.420	40.000	0.00	0.00	0.00	2.27
275	276	5.107133	CCTATGTCGTCGTTATTCACCTTT	58.893	41.667	0.00	0.00	0.00	3.11
276	277	4.159135	ACCTATGTCGTCGTTATTCACCTT	59.841	41.667	0.00	0.00	0.00	3.50
277	278	3.698040	ACCTATGTCGTCGTTATTCACCT	59.302	43.478	0.00	0.00	0.00	4.00
278	279	4.037858	ACCTATGTCGTCGTTATTCACC	57.962	45.455	0.00	0.00	0.00	4.02
279	280	5.814783	AGTACCTATGTCGTCGTTATTCAC	58.185	41.667	0.00	0.00	0.00	3.18
280	281	6.260377	CAAGTACCTATGTCGTCGTTATTCA	58.740	40.000	0.00	0.00	0.00	2.57
281	282	5.172771	GCAAGTACCTATGTCGTCGTTATTC	59.827	44.000	0.00	0.00	0.00	1.75
282	283	5.039333	GCAAGTACCTATGTCGTCGTTATT	58.961	41.667	0.00	0.00	0.00	1.40
283	284	4.604976	GCAAGTACCTATGTCGTCGTTAT	58.395	43.478	0.00	0.00	0.00	1.89
284	285	3.485711	CGCAAGTACCTATGTCGTCGTTA	60.486	47.826	0.00	0.00	0.00	3.18
285	286	2.730090	CGCAAGTACCTATGTCGTCGTT	60.730	50.000	0.00	0.00	0.00	3.85
286	287	1.202110	CGCAAGTACCTATGTCGTCGT	60.202	52.381	0.00	0.00	0.00	4.34
287	288	1.463805	CGCAAGTACCTATGTCGTCG	58.536	55.000	0.00	0.00	0.00	5.12
325	326	6.542821	AGATATATTCTTCCCGGCATTTCAA	58.457	36.000	0.00	0.00	0.00	2.69
347	348	9.513906	CTGGACAGAAACAGATAGATAGATAGA	57.486	37.037	0.00	0.00	36.86	1.98
348	349	8.243426	GCTGGACAGAAACAGATAGATAGATAG	58.757	40.741	3.00	0.00	36.86	2.08
393	394	1.812571	GGGTCCAAACATGTACTGCTG	59.187	52.381	0.00	0.00	0.00	4.41
396	397	1.271163	ACCGGGTCCAAACATGTACTG	60.271	52.381	6.32	0.00	0.00	2.74
398	399	1.161843	CACCGGGTCCAAACATGTAC	58.838	55.000	6.32	0.00	0.00	2.90
399	400	0.606944	GCACCGGGTCCAAACATGTA	60.607	55.000	6.32	0.00	0.00	2.29
400	401	1.901464	GCACCGGGTCCAAACATGT	60.901	57.895	6.32	0.00	0.00	3.21
414	415	0.527565	AATCTCAAATGCCACGCACC	59.472	50.000	0.00	0.00	43.04	5.01
438	439	0.687354	GTACATCGCATCCTCCCCAT	59.313	55.000	0.00	0.00	0.00	4.00
441	442	1.272769	GGTAGTACATCGCATCCTCCC	59.727	57.143	2.06	0.00	0.00	4.30
452	453	1.669779	GTCACGCTCGAGGTAGTACAT	59.330	52.381	15.58	0.00	0.00	2.29
454	455	0.026027	CGTCACGCTCGAGGTAGTAC	59.974	60.000	15.58	8.42	0.00	2.73
455	456	0.108662	TCGTCACGCTCGAGGTAGTA	60.109	55.000	15.58	0.00	33.38	1.82
456	457	1.375140	TCGTCACGCTCGAGGTAGT	60.375	57.895	15.58	0.00	33.38	2.73
457	458	3.482809	TCGTCACGCTCGAGGTAG	58.517	61.111	15.58	5.93	33.38	3.18
578	609	1.137872	CCTCGGCTGCTTCAGTCTAAT	59.862	52.381	0.00	0.00	33.43	1.73
582	613	2.817396	GCCTCGGCTGCTTCAGTC	60.817	66.667	0.00	0.00	38.26	3.51
595	626	3.862991	GTAAGCCCCTCCCGCCTC	61.863	72.222	0.00	0.00	0.00	4.70
598	629	4.525949	GACGTAAGCCCCTCCCGC	62.526	72.222	0.00	0.00	45.62	6.13
599	630	4.203076	CGACGTAAGCCCCTCCCG	62.203	72.222	0.00	0.00	45.62	5.14
607	659	1.077089	GCTCCTTCACCGACGTAAGC	61.077	60.000	0.00	0.00	45.62	3.09
731	811	1.760479	TTGGGCTTTCGGACGGAAGA	61.760	55.000	16.41	0.00	35.70	2.87
732	812	0.887387	TTTGGGCTTTCGGACGGAAG	60.887	55.000	8.35	8.35	35.70	3.46
733	813	1.148723	TTTGGGCTTTCGGACGGAA	59.851	52.632	0.00	0.00	0.00	4.30
734	814	1.598685	GTTTGGGCTTTCGGACGGA	60.599	57.895	0.00	0.00	0.00	4.69
735	815	2.951458	GTTTGGGCTTTCGGACGG	59.049	61.111	0.00	0.00	0.00	4.79
737	817	0.040692	GTTCGTTTGGGCTTTCGGAC	60.041	55.000	0.00	0.00	0.00	4.79
741	829	2.198406	GGTTTGTTCGTTTGGGCTTTC	58.802	47.619	0.00	0.00	0.00	2.62
793	890	2.597510	GTGGGCTTTGGGCTTCGT	60.598	61.111	0.00	0.00	41.46	3.85
794	891	1.743321	TTTGTGGGCTTTGGGCTTCG	61.743	55.000	0.00	0.00	41.46	3.79
795	892	0.033920	CTTTGTGGGCTTTGGGCTTC	59.966	55.000	0.00	0.00	41.46	3.86
796	893	0.398381	TCTTTGTGGGCTTTGGGCTT	60.398	50.000	0.00	0.00	41.46	4.35
797	894	1.115326	GTCTTTGTGGGCTTTGGGCT	61.115	55.000	0.00	0.00	41.46	5.19
798	895	1.115326	AGTCTTTGTGGGCTTTGGGC	61.115	55.000	0.00	0.00	40.90	5.36
799	896	1.413118	AAGTCTTTGTGGGCTTTGGG	58.587	50.000	0.00	0.00	0.00	4.12
800	897	2.695147	AGAAAGTCTTTGTGGGCTTTGG	59.305	45.455	1.60	0.00	32.14	3.28
811	908	5.297569	AGCAGGACTTGTAGAAAGTCTTT	57.702	39.130	15.64	0.00	44.49	2.52
815	912	5.542779	CTGTAAGCAGGACTTGTAGAAAGT	58.457	41.667	0.00	0.00	39.58	2.66
888	998	3.371595	CCCCAAGGAAACAACCGAGATAT	60.372	47.826	0.00	0.00	33.47	1.63
1065	1224	4.933064	GCGAGGTCAGCCCGATCG	62.933	72.222	8.51	8.51	38.74	3.69
1147	1318	2.764128	GATCTCCCCGCACCCTGA	60.764	66.667	0.00	0.00	0.00	3.86
1227	1398	4.880537	CAGCCTCGCCCACGCTAG	62.881	72.222	0.00	0.00	39.84	3.42
1252	1427	1.341531	CGCTCCCCTGTAGATTACCAG	59.658	57.143	0.00	0.00	0.00	4.00
1263	1438	0.962356	AGCAAAATCACGCTCCCCTG	60.962	55.000	0.00	0.00	31.16	4.45
1292	1467	0.744771	CCCCTAAGGAAAGCGCACTC	60.745	60.000	11.47	4.99	38.24	3.51
1339	1518	2.432444	CCCTGTTCCACGCAAATCTAA	58.568	47.619	0.00	0.00	0.00	2.10
1383	1566	1.891150	GGCAGCCCATTGATAAGATGG	59.109	52.381	0.00	0.00	42.99	3.51
1405	1588	4.489771	ACCATAGGCAGCCACCGC	62.490	66.667	15.80	0.00	33.69	5.68
1409	1592	0.473755	CCATACACCATAGGCAGCCA	59.526	55.000	15.80	0.00	0.00	4.75
1411	1594	2.704572	GATCCATACACCATAGGCAGC	58.295	52.381	0.00	0.00	0.00	5.25
1412	1595	2.300152	ACGATCCATACACCATAGGCAG	59.700	50.000	0.00	0.00	0.00	4.85
1418	1615	5.057149	GCTAAAGAACGATCCATACACCAT	58.943	41.667	0.00	0.00	0.00	3.55
1430	1627	1.365699	GGCGAATGGCTAAAGAACGA	58.634	50.000	0.00	0.00	42.94	3.85
1459	1656	3.051327	CTGTGCTATCTTGATCAGAGCG	58.949	50.000	13.15	4.09	33.87	5.03
1474	1671	6.324194	ATGCTGAATTGTCAGAATCTGTGCT	61.324	40.000	10.36	0.00	45.88	4.40
1477	1674	4.142447	GCATGCTGAATTGTCAGAATCTGT	60.142	41.667	11.37	0.00	45.88	3.41
1485	1682	4.074259	ACTACTTGCATGCTGAATTGTCA	58.926	39.130	20.33	0.00	0.00	3.58
1489	1686	3.424703	ACCACTACTTGCATGCTGAATT	58.575	40.909	20.33	2.52	0.00	2.17
1501	1698	2.357009	CGCGTACATCCTACCACTACTT	59.643	50.000	0.00	0.00	0.00	2.24
1510	1707	0.736636	CCACACTCGCGTACATCCTA	59.263	55.000	5.77	0.00	0.00	2.94
1547	1744	1.303888	CTGCAACTCCAGGCCATGT	60.304	57.895	5.01	0.00	0.00	3.21
1562	1759	2.421424	GGCATCGAATTCCATATCCTGC	59.579	50.000	0.00	0.00	0.00	4.85
1565	1762	2.421424	GCAGGCATCGAATTCCATATCC	59.579	50.000	0.00	0.00	0.00	2.59
1566	1763	2.094894	CGCAGGCATCGAATTCCATATC	59.905	50.000	0.00	0.00	0.00	1.63
1567	1764	2.079158	CGCAGGCATCGAATTCCATAT	58.921	47.619	0.00	0.00	0.00	1.78
1568	1765	1.069978	TCGCAGGCATCGAATTCCATA	59.930	47.619	0.00	0.00	32.53	2.74
1569	1766	0.179048	TCGCAGGCATCGAATTCCAT	60.179	50.000	0.00	0.00	32.53	3.41
1570	1767	0.179048	ATCGCAGGCATCGAATTCCA	60.179	50.000	0.00	0.00	39.54	3.53
1571	1768	0.514691	GATCGCAGGCATCGAATTCC	59.485	55.000	0.00	0.00	39.54	3.01
1572	1769	1.194098	CTGATCGCAGGCATCGAATTC	59.806	52.381	5.29	0.00	39.54	2.17
1573	1770	1.224075	CTGATCGCAGGCATCGAATT	58.776	50.000	5.29	0.00	39.54	2.17
1574	1771	0.105593	ACTGATCGCAGGCATCGAAT	59.894	50.000	5.29	0.00	46.60	3.34
1575	1772	0.108186	AACTGATCGCAGGCATCGAA	60.108	50.000	5.29	0.00	46.60	3.71
1576	1773	0.528466	GAACTGATCGCAGGCATCGA	60.528	55.000	3.74	3.74	46.60	3.59
1577	1774	0.807275	TGAACTGATCGCAGGCATCG	60.807	55.000	0.00	0.00	46.60	3.84
1578	1775	0.935898	CTGAACTGATCGCAGGCATC	59.064	55.000	0.00	0.00	46.60	3.91
1579	1776	0.463295	CCTGAACTGATCGCAGGCAT	60.463	55.000	9.77	0.00	46.60	4.40
1580	1777	1.078918	CCTGAACTGATCGCAGGCA	60.079	57.895	9.77	0.00	46.60	4.75
1581	1778	3.805267	CCTGAACTGATCGCAGGC	58.195	61.111	9.77	0.00	46.60	4.85
1587	1784	2.958355	AGAGCTCTAGCCTGAACTGATC	59.042	50.000	16.50	0.00	43.38	2.92
1625	1823	9.566432	GGATATATCAGTTGAGTCAGGAATTTT	57.434	33.333	14.60	0.00	0.00	1.82
1635	1833	6.672266	ACCGAATGGATATATCAGTTGAGT	57.328	37.500	14.60	2.55	39.21	3.41
1652	1850	1.981256	AGGCAGACACAAAACCGAAT	58.019	45.000	0.00	0.00	0.00	3.34
1659	1857	3.814625	TCACACATAAGGCAGACACAAA	58.185	40.909	0.00	0.00	0.00	2.83
1679	1877	6.959639	TGAAGGGGTTAATATTTGCTCATC	57.040	37.500	0.00	0.00	0.00	2.92
1696	1894	3.754965	TCAGATTGAACCACTTGAAGGG	58.245	45.455	0.00	0.00	0.00	3.95
1697	1895	5.772825	TTTCAGATTGAACCACTTGAAGG	57.227	39.130	0.00	0.00	35.89	3.46
1698	1896	7.391554	TCCTATTTCAGATTGAACCACTTGAAG	59.608	37.037	0.00	0.00	35.89	3.02
1699	1897	7.230747	TCCTATTTCAGATTGAACCACTTGAA	58.769	34.615	0.00	0.00	35.89	2.69
1700	1898	6.778821	TCCTATTTCAGATTGAACCACTTGA	58.221	36.000	0.00	0.00	35.89	3.02
1701	1899	7.452880	TTCCTATTTCAGATTGAACCACTTG	57.547	36.000	0.00	0.00	35.89	3.16
1702	1900	7.890127	TCATTCCTATTTCAGATTGAACCACTT	59.110	33.333	0.00	0.00	35.89	3.16
1703	1901	7.405292	TCATTCCTATTTCAGATTGAACCACT	58.595	34.615	0.00	0.00	35.89	4.00
1704	1902	7.630242	TCATTCCTATTTCAGATTGAACCAC	57.370	36.000	0.00	0.00	35.89	4.16
1705	1903	7.340232	CCTTCATTCCTATTTCAGATTGAACCA	59.660	37.037	0.00	0.00	35.89	3.67
1706	1904	7.201857	CCCTTCATTCCTATTTCAGATTGAACC	60.202	40.741	0.00	0.00	35.89	3.62
1707	1905	7.201857	CCCCTTCATTCCTATTTCAGATTGAAC	60.202	40.741	0.00	0.00	35.89	3.18
1708	1906	6.835488	CCCCTTCATTCCTATTTCAGATTGAA	59.165	38.462	0.00	0.00	34.03	2.69
1709	1907	6.068853	ACCCCTTCATTCCTATTTCAGATTGA	60.069	38.462	0.00	0.00	0.00	2.57
1710	1908	6.131961	ACCCCTTCATTCCTATTTCAGATTG	58.868	40.000	0.00	0.00	0.00	2.67
1711	1909	6.347061	ACCCCTTCATTCCTATTTCAGATT	57.653	37.500	0.00	0.00	0.00	2.40
1712	1910	6.347061	AACCCCTTCATTCCTATTTCAGAT	57.653	37.500	0.00	0.00	0.00	2.90
1713	1911	5.340027	GGAACCCCTTCATTCCTATTTCAGA	60.340	44.000	0.00	0.00	41.13	3.27
1714	1912	4.889995	GGAACCCCTTCATTCCTATTTCAG	59.110	45.833	0.00	0.00	41.13	3.02
1715	1913	4.293634	TGGAACCCCTTCATTCCTATTTCA	59.706	41.667	4.74	0.00	44.13	2.69
1716	1914	4.867086	TGGAACCCCTTCATTCCTATTTC	58.133	43.478	4.74	0.00	44.13	2.17
1717	1915	4.965283	TGGAACCCCTTCATTCCTATTT	57.035	40.909	4.74	0.00	44.13	1.40
1718	1916	5.043432	TCAATGGAACCCCTTCATTCCTATT	60.043	40.000	4.74	1.24	44.13	1.73
1727	1925	6.210584	TGTTTCTTATTCAATGGAACCCCTTC	59.789	38.462	0.00	0.00	35.46	3.46
1741	1939	4.499037	AGCCAAACCGTGTTTCTTATTC	57.501	40.909	0.00	0.00	0.00	1.75
1746	1944	2.817844	GGATAAGCCAAACCGTGTTTCT	59.182	45.455	0.00	0.00	36.34	2.52
1768	1968	9.661187	CATTACAGAGCATTAATTCATGAGAAC	57.339	33.333	3.75	0.00	36.39	3.01
1787	1987	3.868077	GGTAACTGCTCTGCTCATTACAG	59.132	47.826	0.00	0.00	36.44	2.74
1819	2019	1.238439	AATGCTGAAACTGGACCGTG	58.762	50.000	0.00	0.00	0.00	4.94
1951	2156	1.674962	GAATCATCCAGCAGCAAGGAC	59.325	52.381	8.64	0.00	36.60	3.85
1952	2157	1.562942	AGAATCATCCAGCAGCAAGGA	59.437	47.619	8.87	8.87	38.50	3.36
1954	2159	2.355132	GACAGAATCATCCAGCAGCAAG	59.645	50.000	0.00	0.00	0.00	4.01
2034	2242	5.107143	ACACACTTGTCAAATGCAAAACAAC	60.107	36.000	0.00	0.00	0.00	3.32
2124	2332	4.399303	ACATAGCTTACCAGGATTTGCAAC	59.601	41.667	0.00	0.00	0.00	4.17
2295	2506	5.313520	TGGCACAATCACACAATAGAATG	57.686	39.130	0.00	0.00	31.92	2.67
2427	2638	3.883830	ATCTTTCTGTGCATCGACTCT	57.116	42.857	0.00	0.00	0.00	3.24
2441	2652	8.044060	TGTCAATACAATCAGACCAATCTTTC	57.956	34.615	0.00	0.00	28.82	2.62
2462	2673	4.596311	CACTAGGCGTGCATGTCA	57.404	55.556	14.01	0.00	36.72	3.58
2488	2699	7.013274	TGCTGCTCAATAACCTCCATATAAAAC	59.987	37.037	0.00	0.00	0.00	2.43
2518	2729	6.172630	GTCAAATAACAAAGGGATGGCAATT	58.827	36.000	0.00	0.00	0.00	2.32
2532	2743	8.402472	CAGAAGTAACAACTTGGTCAAATAACA	58.598	33.333	0.00	0.00	0.00	2.41
2639	2850	4.640647	GGTGATTGAGGAGGATAACAAACC	59.359	45.833	0.00	0.00	0.00	3.27
2851	3066	2.307496	TCCCAAGTTGTGATTGCCAT	57.693	45.000	1.45	0.00	0.00	4.40
2875	3128	5.525745	CGTTATGGTAGCAAATGTGTGGATA	59.474	40.000	0.00	0.00	0.00	2.59
3094	3347	2.650116	CCACTCCTCGTCCAGGGTG	61.650	68.421	0.00	0.00	43.67	4.61
3127	3380	1.302832	CAGGCACTCCTTGTGGTCC	60.303	63.158	0.00	0.00	46.27	4.46
3144	3397	4.096681	TCCTAACAGGCATTCTTCTCTCA	58.903	43.478	0.00	0.00	34.61	3.27
3155	3408	3.007506	TCTTTTCGACATCCTAACAGGCA	59.992	43.478	0.00	0.00	34.61	4.75
3170	3423	3.575965	CCACCAAGGGATTTCTTTTCG	57.424	47.619	0.00	0.00	0.00	3.46
3211	3464	1.597663	AGCACGCTTCTTTGTACACAC	59.402	47.619	0.00	0.00	0.00	3.82
3212	3465	1.948104	AGCACGCTTCTTTGTACACA	58.052	45.000	0.00	0.00	0.00	3.72
3307	3560	4.465632	TCACATATGCTTTACACGACCT	57.534	40.909	1.58	0.00	0.00	3.85
3325	3578	2.461110	ATCAACGCCGCCGAATCAC	61.461	57.895	0.00	0.00	38.29	3.06
3361	3614	3.215245	TGGCAAACCAACCACAGC	58.785	55.556	0.00	0.00	45.37	4.40
3407	3660	7.285172	TCATTCCATCCAATAGTTTGTACCATG	59.715	37.037	0.00	0.00	0.00	3.66
3519	3773	4.790765	TGTTCTCTGAAGATCACACGAT	57.209	40.909	0.00	0.00	33.31	3.73
3520	3774	4.790765	ATGTTCTCTGAAGATCACACGA	57.209	40.909	0.00	0.00	34.79	4.35
3521	3775	5.636965	AGAAATGTTCTCTGAAGATCACACG	59.363	40.000	0.00	0.00	34.07	4.49
3544	3798	3.571401	AGTTCTCCAAAGATTGCACCAAG	59.429	43.478	0.00	0.00	0.00	3.61
3620	3879	7.014230	GCTTCTATCAAGTTCTCTAGAGACCAT	59.986	40.741	22.25	5.51	37.14	3.55
3627	3886	5.746245	CCGTTGCTTCTATCAAGTTCTCTAG	59.254	44.000	0.00	0.00	0.00	2.43
3657	3916	2.106683	GGAGTTGGCAACGGATCCG	61.107	63.158	32.20	32.20	46.03	4.18
3721	3981	7.118496	ACGAGAGACCTCTGAATAATTGATT	57.882	36.000	3.99	0.00	40.61	2.57
3768	4028	6.373774	AGCTTTCCAAATGATGAGAGTAACTG	59.626	38.462	0.00	0.00	0.00	3.16
3798	4058	2.151202	AGTACACAATTTCCTGGCGTG	58.849	47.619	0.00	0.00	0.00	5.34
3801	4061	5.731591	AGTAGTAGTACACAATTTCCTGGC	58.268	41.667	10.33	0.00	0.00	4.85
3824	4084	3.067461	CCAACACTTGATTTTGGACGGAA	59.933	43.478	0.00	0.00	42.17	4.30
3859	4119	0.257039	GTAGTACTCCCTCCGTCCCA	59.743	60.000	0.00	0.00	0.00	4.37
3862	4122	2.119801	TGTGTAGTACTCCCTCCGTC	57.880	55.000	0.00	0.00	0.00	4.79
3864	4124	4.467198	AAATTGTGTAGTACTCCCTCCG	57.533	45.455	0.00	0.00	0.00	4.63
3887	4147	8.068977	CAGAGAGTCTGTCATTTTGAAAGAAAG	58.931	37.037	0.00	0.00	42.01	2.62
3896	4157	5.311265	TGAATGCAGAGAGTCTGTCATTTT	58.689	37.500	18.85	7.14	45.94	1.82
3907	4168	9.557338	CTTTTTCTTCTTAATGAATGCAGAGAG	57.443	33.333	0.00	0.00	33.71	3.20
3932	4193	4.407945	GGTCATGTATGTGTAGTAACCCCT	59.592	45.833	0.00	0.00	0.00	4.79
3933	4194	4.162698	TGGTCATGTATGTGTAGTAACCCC	59.837	45.833	0.00	0.00	0.00	4.95
3937	4198	7.949690	AGTAGTGGTCATGTATGTGTAGTAA	57.050	36.000	0.00	0.00	0.00	2.24
4001	4263	6.486657	GCTTGGTTGCCTGTATAGATATTTCA	59.513	38.462	0.00	0.00	0.00	2.69
4014	4276	1.068055	GTCTTGATGCTTGGTTGCCTG	60.068	52.381	0.00	0.00	0.00	4.85
4015	4277	1.251251	GTCTTGATGCTTGGTTGCCT	58.749	50.000	0.00	0.00	0.00	4.75
4016	4278	0.961019	TGTCTTGATGCTTGGTTGCC	59.039	50.000	0.00	0.00	0.00	4.52
4017	4279	1.610522	ACTGTCTTGATGCTTGGTTGC	59.389	47.619	0.00	0.00	0.00	4.17
4018	4280	3.996150	AACTGTCTTGATGCTTGGTTG	57.004	42.857	0.00	0.00	0.00	3.77
4019	4281	3.068590	CCAAACTGTCTTGATGCTTGGTT	59.931	43.478	4.88	0.00	0.00	3.67
4020	4282	2.624838	CCAAACTGTCTTGATGCTTGGT	59.375	45.455	4.88	0.00	0.00	3.67
4021	4283	2.608752	GCCAAACTGTCTTGATGCTTGG	60.609	50.000	0.00	0.00	35.90	3.61
4023	4285	1.615392	GGCCAAACTGTCTTGATGCTT	59.385	47.619	0.00	0.00	0.00	3.91
4024	4286	1.251251	GGCCAAACTGTCTTGATGCT	58.749	50.000	0.00	0.00	0.00	3.79
4025	4287	0.109597	CGGCCAAACTGTCTTGATGC	60.110	55.000	2.24	0.00	0.00	3.91

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.