Multiple sequence alignment - TraesCS3D01G523100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G523100 chr3D 100.000 4755 0 0 1 4755 603961075 603965829 0.000000e+00 8781.0
1 TraesCS3D01G523100 chr3D 85.317 1907 249 25 1436 3331 604253132 604251246 0.000000e+00 1941.0
2 TraesCS3D01G523100 chr3D 84.464 1931 226 37 1419 3337 604143993 604142125 0.000000e+00 1836.0
3 TraesCS3D01G523100 chr3D 83.007 1836 262 26 1531 3338 602781696 602779883 0.000000e+00 1616.0
4 TraesCS3D01G523100 chr3D 92.933 283 20 0 381 663 159569987 159570269 3.420000e-111 412.0
5 TraesCS3D01G523100 chr3D 91.638 287 23 1 378 663 537921782 537921496 3.450000e-106 396.0
6 TraesCS3D01G523100 chr3D 74.526 369 68 21 1282 1635 604288753 604288396 2.310000e-28 137.0
7 TraesCS3D01G523100 chr3D 74.184 337 61 19 805 1128 604253874 604253551 3.010000e-22 117.0
8 TraesCS3D01G523100 chr3D 89.011 91 10 0 3368 3458 603962145 603962235 3.890000e-21 113.0
9 TraesCS3D01G523100 chr3D 89.011 91 10 0 1071 1161 603964442 603964532 3.890000e-21 113.0
10 TraesCS3D01G523100 chr3D 82.114 123 18 4 1654 1772 604128949 604128827 8.420000e-18 102.0
11 TraesCS3D01G523100 chr3D 82.692 104 18 0 1045 1148 604144521 604144418 5.070000e-15 93.5
12 TraesCS3D01G523100 chr3D 91.837 49 3 1 1240 1288 604129242 604129195 3.070000e-07 67.6
13 TraesCS3D01G523100 chr3B 95.324 2267 70 14 1369 3606 811079133 811081392 0.000000e+00 3567.0
14 TraesCS3D01G523100 chr3B 83.725 2083 289 36 1282 3339 811141681 811139624 0.000000e+00 1923.0
15 TraesCS3D01G523100 chr3B 83.259 1565 223 27 1790 3338 811040916 811042457 0.000000e+00 1402.0
16 TraesCS3D01G523100 chr3B 84.801 704 36 16 665 1368 811078375 811079007 4.010000e-180 641.0
17 TraesCS3D01G523100 chr3B 80.519 616 79 14 2734 3339 811054584 811055168 7.310000e-118 435.0
18 TraesCS3D01G523100 chr3B 90.909 286 26 0 378 663 761834687 761834972 7.460000e-103 385.0
19 TraesCS3D01G523100 chr3B 85.176 398 22 8 1 368 811072026 811072416 1.620000e-99 374.0
20 TraesCS3D01G523100 chr3B 79.394 330 36 18 805 1127 811143330 811143026 2.240000e-48 204.0
21 TraesCS3D01G523100 chr3B 92.727 55 4 0 3375 3429 811078747 811078801 3.940000e-11 80.5
22 TraesCS3D01G523100 chr3B 91.837 49 3 1 1240 1288 811116942 811116895 3.070000e-07 67.6
23 TraesCS3D01G523100 chr3A 93.094 1506 63 9 765 2251 733479879 733481362 0.000000e+00 2167.0
24 TraesCS3D01G523100 chr3A 83.784 2109 260 49 1282 3339 733726371 733724294 0.000000e+00 1925.0
25 TraesCS3D01G523100 chr3A 83.033 1945 269 31 1419 3327 733860494 733858575 0.000000e+00 1707.0
26 TraesCS3D01G523100 chr3A 83.206 1834 260 30 1532 3338 733333061 733334873 0.000000e+00 1637.0
27 TraesCS3D01G523100 chr3A 82.151 1832 268 35 1519 3327 733436162 733437957 0.000000e+00 1517.0
28 TraesCS3D01G523100 chr3A 82.131 1830 270 34 1519 3327 733411367 733413160 0.000000e+00 1515.0
29 TraesCS3D01G523100 chr3A 90.000 340 24 5 1 335 733478952 733479286 9.450000e-117 431.0
30 TraesCS3D01G523100 chr3A 92.746 193 13 1 3634 3826 733481411 733481602 1.300000e-70 278.0
31 TraesCS3D01G523100 chr3A 80.374 214 31 9 1654 1859 733627243 733627033 8.240000e-33 152.0
32 TraesCS3D01G523100 chr3A 75.831 331 44 20 794 1119 733861281 733860982 8.300000e-28 135.0
33 TraesCS3D01G523100 chr3A 85.714 119 16 1 1002 1119 733863054 733862936 1.800000e-24 124.0
34 TraesCS3D01G523100 chr3A 91.837 49 3 1 1240 1288 733627533 733627486 3.070000e-07 67.6
35 TraesCS3D01G523100 chr3A 92.308 39 3 0 1282 1320 40291231 40291193 6.650000e-04 56.5
36 TraesCS3D01G523100 chrUn 84.884 1687 212 20 1664 3339 42260160 42261814 0.000000e+00 1663.0
37 TraesCS3D01G523100 chr7B 83.499 903 118 11 3836 4712 599861018 599860121 0.000000e+00 813.0
38 TraesCS3D01G523100 chr7B 71.852 405 97 15 4127 4522 242293596 242293200 3.030000e-17 100.0
39 TraesCS3D01G523100 chr2D 83.128 895 98 23 3836 4712 459830449 459829590 0.000000e+00 767.0
40 TraesCS3D01G523100 chr2B 85.914 717 85 8 3999 4712 541100887 541100184 0.000000e+00 750.0
41 TraesCS3D01G523100 chr2B 86.441 59 7 1 3836 3893 541101027 541100969 3.970000e-06 63.9
42 TraesCS3D01G523100 chr4D 82.270 846 128 18 3836 4668 349137112 349136276 0.000000e+00 712.0
43 TraesCS3D01G523100 chr4D 80.355 901 138 30 3836 4714 215456446 215455563 0.000000e+00 647.0
44 TraesCS3D01G523100 chr1A 80.620 903 139 17 3836 4714 569137531 569136641 0.000000e+00 665.0
45 TraesCS3D01G523100 chr6B 86.139 606 76 6 4031 4631 36816042 36815440 0.000000e+00 647.0
46 TraesCS3D01G523100 chr1D 79.952 828 120 28 3890 4695 484448847 484448044 6.910000e-158 568.0
47 TraesCS3D01G523100 chr5B 80.590 644 115 9 4076 4714 17587919 17588557 5.530000e-134 488.0
48 TraesCS3D01G523100 chr5D 94.056 286 17 0 378 663 433971936 433972221 7.310000e-118 435.0
49 TraesCS3D01G523100 chr5D 93.772 289 18 0 379 667 448074311 448074599 7.310000e-118 435.0
50 TraesCS3D01G523100 chr7D 93.031 287 19 1 378 663 167402917 167403203 7.360000e-113 418.0
51 TraesCS3D01G523100 chr7D 90.102 293 28 1 373 665 308568493 308568784 3.470000e-101 379.0
52 TraesCS3D01G523100 chr6D 92.759 290 19 2 374 662 414269876 414269588 7.360000e-113 418.0
53 TraesCS3D01G523100 chr7A 90.847 295 23 3 372 664 91077947 91078239 4.460000e-105 392.0
54 TraesCS3D01G523100 chr4A 87.013 154 15 3 3836 3987 478163645 478163795 8.180000e-38 169.0
55 TraesCS3D01G523100 chr5A 92.308 39 3 0 1282 1320 585425813 585425775 6.650000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G523100 chr3D 603961075 603965829 4754 False 3002.333333 8781 92.674000 1 4755 3 chr3D.!!$F2 4754
1 TraesCS3D01G523100 chr3D 602779883 602781696 1813 True 1616.000000 1616 83.007000 1531 3338 1 chr3D.!!$R2 1807
2 TraesCS3D01G523100 chr3D 604251246 604253874 2628 True 1029.000000 1941 79.750500 805 3331 2 chr3D.!!$R6 2526
3 TraesCS3D01G523100 chr3D 604142125 604144521 2396 True 964.750000 1836 83.578000 1045 3337 2 chr3D.!!$R5 2292
4 TraesCS3D01G523100 chr3B 811078375 811081392 3017 False 1429.500000 3567 90.950667 665 3606 3 chr3B.!!$F5 2941
5 TraesCS3D01G523100 chr3B 811040916 811042457 1541 False 1402.000000 1402 83.259000 1790 3338 1 chr3B.!!$F2 1548
6 TraesCS3D01G523100 chr3B 811139624 811143330 3706 True 1063.500000 1923 81.559500 805 3339 2 chr3B.!!$R2 2534
7 TraesCS3D01G523100 chr3B 811054584 811055168 584 False 435.000000 435 80.519000 2734 3339 1 chr3B.!!$F3 605
8 TraesCS3D01G523100 chr3A 733724294 733726371 2077 True 1925.000000 1925 83.784000 1282 3339 1 chr3A.!!$R2 2057
9 TraesCS3D01G523100 chr3A 733333061 733334873 1812 False 1637.000000 1637 83.206000 1532 3338 1 chr3A.!!$F1 1806
10 TraesCS3D01G523100 chr3A 733436162 733437957 1795 False 1517.000000 1517 82.151000 1519 3327 1 chr3A.!!$F3 1808
11 TraesCS3D01G523100 chr3A 733411367 733413160 1793 False 1515.000000 1515 82.131000 1519 3327 1 chr3A.!!$F2 1808
12 TraesCS3D01G523100 chr3A 733478952 733481602 2650 False 958.666667 2167 91.946667 1 3826 3 chr3A.!!$F4 3825
13 TraesCS3D01G523100 chr3A 733858575 733863054 4479 True 655.333333 1707 81.526000 794 3327 3 chr3A.!!$R4 2533
14 TraesCS3D01G523100 chrUn 42260160 42261814 1654 False 1663.000000 1663 84.884000 1664 3339 1 chrUn.!!$F1 1675
15 TraesCS3D01G523100 chr7B 599860121 599861018 897 True 813.000000 813 83.499000 3836 4712 1 chr7B.!!$R2 876
16 TraesCS3D01G523100 chr2D 459829590 459830449 859 True 767.000000 767 83.128000 3836 4712 1 chr2D.!!$R1 876
17 TraesCS3D01G523100 chr2B 541100184 541101027 843 True 406.950000 750 86.177500 3836 4712 2 chr2B.!!$R1 876
18 TraesCS3D01G523100 chr4D 349136276 349137112 836 True 712.000000 712 82.270000 3836 4668 1 chr4D.!!$R2 832
19 TraesCS3D01G523100 chr4D 215455563 215456446 883 True 647.000000 647 80.355000 3836 4714 1 chr4D.!!$R1 878
20 TraesCS3D01G523100 chr1A 569136641 569137531 890 True 665.000000 665 80.620000 3836 4714 1 chr1A.!!$R1 878
21 TraesCS3D01G523100 chr6B 36815440 36816042 602 True 647.000000 647 86.139000 4031 4631 1 chr6B.!!$R1 600
22 TraesCS3D01G523100 chr1D 484448044 484448847 803 True 568.000000 568 79.952000 3890 4695 1 chr1D.!!$R1 805
23 TraesCS3D01G523100 chr5B 17587919 17588557 638 False 488.000000 488 80.590000 4076 4714 1 chr5B.!!$F1 638

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
662 666 0.035056 CTCCAAACCGAATGAGGCCT 60.035 55.0 3.86 3.86 33.69 5.19 F
758 762 0.244994 CTCTCCAACCCAGTCGTCTG 59.755 60.0 2.40 2.40 41.01 3.51 F
760 764 0.393077 CTCCAACCCAGTCGTCTGTT 59.607 55.0 8.82 0.00 39.82 3.16 F
761 765 0.834612 TCCAACCCAGTCGTCTGTTT 59.165 50.0 8.82 0.00 39.82 2.83 F
2997 6135 0.105913 AATCCTCTCCCTCCCTCGAC 60.106 60.0 0.00 0.00 0.00 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2548 5675 1.224120 TCCTCCAGATTAGGGGCATCT 59.776 52.381 0.0 0.0 34.66 2.90 R
2621 5748 1.243342 TGGCTTTCCTTGTCATGCGG 61.243 55.000 0.0 0.0 0.00 5.69 R
2997 6135 3.016031 TCAACGAACATGGATTGGATGG 58.984 45.455 0.0 0.0 0.00 3.51 R
3348 6545 0.671251 CCATAGGAGACACTCTCGGC 59.329 60.000 0.0 0.0 44.28 5.54 R
4166 7468 0.036010 CTGAAAGGGCAGACACGGAT 60.036 55.000 0.0 0.0 38.14 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.725641 TGCGTCTTCATCATCCACAC 58.274 50.000 0.00 0.00 0.00 3.82
61 64 2.510238 GCATTGAGAGGAGCGCGT 60.510 61.111 8.43 0.00 0.00 6.01
76 79 1.668047 GCGCGTAAACCTAGTGTCACT 60.668 52.381 10.99 10.99 0.00 3.41
97 101 2.791383 TCAAACCACAAATGAAGCCG 57.209 45.000 0.00 0.00 0.00 5.52
119 123 5.012148 CCGAAAAGATGTAGATACCCCTGAT 59.988 44.000 0.00 0.00 0.00 2.90
131 135 3.136641 ACCCCTGATCTCATGGTAAGT 57.863 47.619 0.00 0.00 31.60 2.24
178 182 7.230849 TCACATTTCATTATTGAACTTGGCT 57.769 32.000 0.00 0.00 41.50 4.75
179 183 8.347004 TCACATTTCATTATTGAACTTGGCTA 57.653 30.769 0.00 0.00 41.50 3.93
182 186 9.193806 ACATTTCATTATTGAACTTGGCTAGAT 57.806 29.630 2.20 0.00 41.50 1.98
197 201 8.734386 ACTTGGCTAGATATATAAATTGCTTGC 58.266 33.333 2.20 0.00 0.00 4.01
199 203 9.958180 TTGGCTAGATATATAAATTGCTTGCTA 57.042 29.630 0.00 0.00 0.00 3.49
223 227 5.406649 CAAAGCTTTGTGTACAAACTGGAA 58.593 37.500 27.59 0.00 40.55 3.53
224 228 5.652994 AAGCTTTGTGTACAAACTGGAAA 57.347 34.783 6.11 0.00 40.55 3.13
225 229 5.652994 AGCTTTGTGTACAAACTGGAAAA 57.347 34.783 6.11 0.00 40.55 2.29
227 231 6.042143 AGCTTTGTGTACAAACTGGAAAATG 58.958 36.000 6.11 0.00 40.55 2.32
229 233 6.019881 GCTTTGTGTACAAACTGGAAAATGAC 60.020 38.462 6.11 0.00 40.55 3.06
230 234 5.508200 TGTGTACAAACTGGAAAATGACC 57.492 39.130 0.00 0.00 0.00 4.02
231 235 5.197451 TGTGTACAAACTGGAAAATGACCT 58.803 37.500 0.00 0.00 0.00 3.85
232 236 5.067153 TGTGTACAAACTGGAAAATGACCTG 59.933 40.000 0.00 0.00 0.00 4.00
233 237 5.298276 GTGTACAAACTGGAAAATGACCTGA 59.702 40.000 0.00 0.00 0.00 3.86
235 239 5.712152 ACAAACTGGAAAATGACCTGATC 57.288 39.130 0.00 0.00 0.00 2.92
236 240 4.216257 ACAAACTGGAAAATGACCTGATCG 59.784 41.667 0.00 0.00 0.00 3.69
237 241 3.703001 ACTGGAAAATGACCTGATCGT 57.297 42.857 0.00 0.00 0.00 3.73
238 242 3.600388 ACTGGAAAATGACCTGATCGTC 58.400 45.455 0.00 0.00 0.00 4.20
240 244 1.933853 GGAAAATGACCTGATCGTCGG 59.066 52.381 0.00 0.00 35.40 4.79
241 245 2.618053 GAAAATGACCTGATCGTCGGT 58.382 47.619 1.24 1.24 35.40 4.69
247 251 3.001395 GACCTGATCGTCGGTCTTATG 57.999 52.381 16.90 0.00 44.90 1.90
250 254 2.619177 CCTGATCGTCGGTCTTATGACT 59.381 50.000 7.10 0.00 42.54 3.41
251 255 3.066900 CCTGATCGTCGGTCTTATGACTT 59.933 47.826 7.10 0.00 42.54 3.01
253 257 2.933495 TCGTCGGTCTTATGACTTGG 57.067 50.000 8.51 0.15 42.54 3.61
255 259 3.021695 TCGTCGGTCTTATGACTTGGAT 58.978 45.455 8.51 0.00 42.54 3.41
256 260 3.446161 TCGTCGGTCTTATGACTTGGATT 59.554 43.478 8.51 0.00 42.54 3.01
258 262 4.676986 CGTCGGTCTTATGACTTGGATTCA 60.677 45.833 8.51 0.00 42.54 2.57
259 263 4.567159 GTCGGTCTTATGACTTGGATTCAC 59.433 45.833 8.51 0.00 42.54 3.18
261 265 5.655090 TCGGTCTTATGACTTGGATTCACTA 59.345 40.000 8.51 0.00 42.54 2.74
263 267 6.255887 CGGTCTTATGACTTGGATTCACTAAC 59.744 42.308 8.51 0.00 42.54 2.34
264 268 6.539103 GGTCTTATGACTTGGATTCACTAACC 59.461 42.308 8.51 0.00 42.54 2.85
266 270 7.770897 GTCTTATGACTTGGATTCACTAACCAT 59.229 37.037 1.60 0.00 39.94 3.55
268 272 4.843728 TGACTTGGATTCACTAACCATCC 58.156 43.478 0.00 0.00 37.57 3.51
269 273 4.288366 TGACTTGGATTCACTAACCATCCA 59.712 41.667 0.00 0.00 43.96 3.41
270 274 5.044919 TGACTTGGATTCACTAACCATCCAT 60.045 40.000 1.00 0.00 44.79 3.41
272 276 3.554934 TGGATTCACTAACCATCCATGC 58.445 45.455 0.00 0.00 41.35 4.06
273 277 3.053768 TGGATTCACTAACCATCCATGCA 60.054 43.478 0.00 0.00 41.35 3.96
274 278 3.316308 GGATTCACTAACCATCCATGCAC 59.684 47.826 0.00 0.00 37.10 4.57
276 280 1.632920 TCACTAACCATCCATGCACCA 59.367 47.619 0.00 0.00 0.00 4.17
277 281 2.040947 TCACTAACCATCCATGCACCAA 59.959 45.455 0.00 0.00 0.00 3.67
278 282 2.824936 CACTAACCATCCATGCACCAAA 59.175 45.455 0.00 0.00 0.00 3.28
279 283 3.448301 CACTAACCATCCATGCACCAAAT 59.552 43.478 0.00 0.00 0.00 2.32
280 284 3.448301 ACTAACCATCCATGCACCAAATG 59.552 43.478 0.00 0.00 0.00 2.32
288 292 2.650196 GCACCAAATGCGGCAAGA 59.350 55.556 6.82 0.00 46.55 3.02
289 293 1.444895 GCACCAAATGCGGCAAGAG 60.445 57.895 6.82 0.00 46.55 2.85
290 294 1.444895 CACCAAATGCGGCAAGAGC 60.445 57.895 6.82 0.00 41.10 4.09
359 363 8.934825 TCTTTTCTTTGTTTTGAATGAAAGTGG 58.065 29.630 0.00 0.00 33.20 4.00
360 364 7.608308 TTTCTTTGTTTTGAATGAAAGTGGG 57.392 32.000 0.00 0.00 30.01 4.61
361 365 5.669477 TCTTTGTTTTGAATGAAAGTGGGG 58.331 37.500 0.00 0.00 0.00 4.96
363 367 5.683876 TTGTTTTGAATGAAAGTGGGGAA 57.316 34.783 0.00 0.00 0.00 3.97
364 368 5.683876 TGTTTTGAATGAAAGTGGGGAAA 57.316 34.783 0.00 0.00 0.00 3.13
365 369 6.245890 TGTTTTGAATGAAAGTGGGGAAAT 57.754 33.333 0.00 0.00 0.00 2.17
366 370 7.366847 TGTTTTGAATGAAAGTGGGGAAATA 57.633 32.000 0.00 0.00 0.00 1.40
367 371 7.441017 TGTTTTGAATGAAAGTGGGGAAATAG 58.559 34.615 0.00 0.00 0.00 1.73
368 372 7.070571 TGTTTTGAATGAAAGTGGGGAAATAGT 59.929 33.333 0.00 0.00 0.00 2.12
371 375 6.493166 TGAATGAAAGTGGGGAAATAGTCAT 58.507 36.000 0.00 0.00 0.00 3.06
372 376 7.638444 TGAATGAAAGTGGGGAAATAGTCATA 58.362 34.615 0.00 0.00 0.00 2.15
374 378 6.636454 TGAAAGTGGGGAAATAGTCATACT 57.364 37.500 0.00 0.00 0.00 2.12
375 379 7.027874 TGAAAGTGGGGAAATAGTCATACTT 57.972 36.000 0.00 0.00 30.86 2.24
378 382 5.755849 AGTGGGGAAATAGTCATACTTTGG 58.244 41.667 0.00 0.00 0.00 3.28
379 383 4.887655 GTGGGGAAATAGTCATACTTTGGG 59.112 45.833 0.00 0.00 0.00 4.12
380 384 3.889538 GGGGAAATAGTCATACTTTGGGC 59.110 47.826 0.00 0.00 0.00 5.36
382 386 4.822350 GGGAAATAGTCATACTTTGGGCTC 59.178 45.833 0.00 0.00 0.00 4.70
383 387 5.437060 GGAAATAGTCATACTTTGGGCTCA 58.563 41.667 0.00 0.00 0.00 4.26
385 389 6.547510 GGAAATAGTCATACTTTGGGCTCATT 59.452 38.462 0.00 0.00 0.00 2.57
386 390 7.255277 GGAAATAGTCATACTTTGGGCTCATTC 60.255 40.741 0.00 0.00 0.00 2.67
387 391 3.535561 AGTCATACTTTGGGCTCATTCG 58.464 45.455 0.00 0.00 0.00 3.34
388 392 2.614057 GTCATACTTTGGGCTCATTCGG 59.386 50.000 0.00 0.00 0.00 4.30
389 393 2.238646 TCATACTTTGGGCTCATTCGGT 59.761 45.455 0.00 0.00 0.00 4.69
390 394 2.871096 TACTTTGGGCTCATTCGGTT 57.129 45.000 0.00 0.00 0.00 4.44
391 395 1.995376 ACTTTGGGCTCATTCGGTTT 58.005 45.000 0.00 0.00 0.00 3.27
392 396 1.613437 ACTTTGGGCTCATTCGGTTTG 59.387 47.619 0.00 0.00 0.00 2.93
393 397 0.965439 TTTGGGCTCATTCGGTTTGG 59.035 50.000 0.00 0.00 0.00 3.28
394 398 0.111446 TTGGGCTCATTCGGTTTGGA 59.889 50.000 0.00 0.00 0.00 3.53
395 399 0.322456 TGGGCTCATTCGGTTTGGAG 60.322 55.000 0.00 0.00 0.00 3.86
397 401 0.035439 GGCTCATTCGGTTTGGAGGA 60.035 55.000 0.00 0.00 0.00 3.71
402 406 4.265073 CTCATTCGGTTTGGAGGATTTCT 58.735 43.478 0.00 0.00 0.00 2.52
403 407 5.428253 CTCATTCGGTTTGGAGGATTTCTA 58.572 41.667 0.00 0.00 0.00 2.10
405 409 7.131907 TCATTCGGTTTGGAGGATTTCTATA 57.868 36.000 0.00 0.00 0.00 1.31
406 410 7.217200 TCATTCGGTTTGGAGGATTTCTATAG 58.783 38.462 0.00 0.00 0.00 1.31
407 411 5.546621 TCGGTTTGGAGGATTTCTATAGG 57.453 43.478 0.00 0.00 0.00 2.57
408 412 5.213519 TCGGTTTGGAGGATTTCTATAGGA 58.786 41.667 0.00 0.00 0.00 2.94
409 413 5.664006 TCGGTTTGGAGGATTTCTATAGGAA 59.336 40.000 0.00 0.00 0.00 3.36
410 414 6.157297 TCGGTTTGGAGGATTTCTATAGGAAA 59.843 38.462 0.00 0.00 46.33 3.13
411 415 6.826741 CGGTTTGGAGGATTTCTATAGGAAAA 59.173 38.462 0.00 0.00 45.56 2.29
413 417 8.467598 GGTTTGGAGGATTTCTATAGGAAAAAC 58.532 37.037 0.00 3.19 45.56 2.43
417 421 8.202137 TGGAGGATTTCTATAGGAAAAACGTAG 58.798 37.037 0.00 0.00 45.56 3.51
418 422 7.656542 GGAGGATTTCTATAGGAAAAACGTAGG 59.343 40.741 0.00 0.00 45.56 3.18
419 423 8.315220 AGGATTTCTATAGGAAAAACGTAGGA 57.685 34.615 0.00 0.00 45.56 2.94
420 424 8.765517 AGGATTTCTATAGGAAAAACGTAGGAA 58.234 33.333 0.00 0.00 45.56 3.36
421 425 8.824781 GGATTTCTATAGGAAAAACGTAGGAAC 58.175 37.037 0.00 0.00 45.56 3.62
423 427 9.729281 ATTTCTATAGGAAAAACGTAGGAACAA 57.271 29.630 0.00 0.00 45.56 2.83
424 428 8.767478 TTCTATAGGAAAAACGTAGGAACAAG 57.233 34.615 0.00 0.00 0.00 3.16
425 429 7.325694 TCTATAGGAAAAACGTAGGAACAAGG 58.674 38.462 0.00 0.00 0.00 3.61
427 431 4.981812 AGGAAAAACGTAGGAACAAGGAT 58.018 39.130 0.00 0.00 0.00 3.24
428 432 5.382616 AGGAAAAACGTAGGAACAAGGATT 58.617 37.500 0.00 0.00 0.00 3.01
454 458 9.353431 TGCATAGGAAAAATTTCTATAGATGCA 57.647 29.630 12.75 12.75 38.08 3.96
459 463 8.571336 AGGAAAAATTTCTATAGATGCATTCGG 58.429 33.333 2.58 0.00 37.35 4.30
460 464 8.352942 GGAAAAATTTCTATAGATGCATTCGGT 58.647 33.333 2.58 0.00 37.35 4.69
461 465 9.736023 GAAAAATTTCTATAGATGCATTCGGTT 57.264 29.630 2.58 0.07 34.41 4.44
467 471 9.653287 TTTCTATAGATGCATTCGGTTTATAGG 57.347 33.333 2.58 0.00 0.00 2.57
469 473 9.031537 TCTATAGATGCATTCGGTTTATAGGAA 57.968 33.333 0.00 0.00 0.00 3.36
471 475 6.619801 AGATGCATTCGGTTTATAGGAAAC 57.380 37.500 0.00 0.00 0.00 2.78
473 477 3.064271 TGCATTCGGTTTATAGGAAACGC 59.936 43.478 0.00 0.00 39.47 4.84
474 478 3.843510 GCATTCGGTTTATAGGAAACGCG 60.844 47.826 3.53 3.53 39.47 6.01
475 479 2.652941 TCGGTTTATAGGAAACGCGT 57.347 45.000 5.58 5.58 39.47 6.01
477 481 3.434637 TCGGTTTATAGGAAACGCGTAC 58.565 45.455 14.46 10.25 39.47 3.67
479 483 2.535574 GGTTTATAGGAAACGCGTACGG 59.464 50.000 14.46 9.73 46.04 4.02
480 484 2.490328 TTATAGGAAACGCGTACGGG 57.510 50.000 28.27 28.27 46.04 5.28
484 488 1.448365 GGAAACGCGTACGGGGATT 60.448 57.895 31.94 25.64 46.04 3.01
487 491 1.999024 GAAACGCGTACGGGGATTTAA 59.001 47.619 31.94 0.00 46.04 1.52
488 492 2.314323 AACGCGTACGGGGATTTAAT 57.686 45.000 31.94 10.10 46.04 1.40
489 493 3.451141 AACGCGTACGGGGATTTAATA 57.549 42.857 31.94 0.00 46.04 0.98
490 494 3.017265 ACGCGTACGGGGATTTAATAG 57.983 47.619 31.94 0.00 46.04 1.73
492 496 2.030007 CGCGTACGGGGATTTAATAGGA 60.030 50.000 23.33 0.00 34.97 2.94
494 498 4.572909 GCGTACGGGGATTTAATAGGAAT 58.427 43.478 18.39 0.00 0.00 3.01
495 499 5.622007 CGCGTACGGGGATTTAATAGGAATA 60.622 44.000 23.33 0.00 34.97 1.75
497 501 6.573094 GCGTACGGGGATTTAATAGGAATACT 60.573 42.308 18.39 0.00 0.00 2.12
499 503 8.689972 CGTACGGGGATTTAATAGGAATACTAT 58.310 37.037 7.57 0.00 44.26 2.12
502 506 9.108111 ACGGGGATTTAATAGGAATACTATTCA 57.892 33.333 0.13 0.00 46.89 2.57
515 519 9.533831 AGGAATACTATTCATTTCCTGTGTTTT 57.466 29.630 10.37 0.00 44.80 2.43
520 524 7.661040 ACTATTCATTTCCTGTGTTTTTGGAG 58.339 34.615 0.00 0.00 0.00 3.86
521 525 4.935352 TCATTTCCTGTGTTTTTGGAGG 57.065 40.909 0.00 0.00 0.00 4.30
523 527 4.959210 TCATTTCCTGTGTTTTTGGAGGAA 59.041 37.500 0.00 0.00 41.80 3.36
525 529 5.529581 TTTCCTGTGTTTTTGGAGGAATC 57.470 39.130 0.00 0.00 42.76 2.52
527 531 5.576563 TCCTGTGTTTTTGGAGGAATCTA 57.423 39.130 0.00 0.00 31.43 1.98
528 532 5.313712 TCCTGTGTTTTTGGAGGAATCTAC 58.686 41.667 0.00 0.00 31.43 2.59
530 534 5.048713 CCTGTGTTTTTGGAGGAATCTACAC 60.049 44.000 0.00 0.00 32.60 2.90
531 535 5.441500 TGTGTTTTTGGAGGAATCTACACA 58.558 37.500 0.00 0.00 41.39 3.72
532 536 6.068010 TGTGTTTTTGGAGGAATCTACACAT 58.932 36.000 0.00 0.00 39.51 3.21
533 537 6.206634 TGTGTTTTTGGAGGAATCTACACATC 59.793 38.462 0.00 0.00 39.51 3.06
534 538 5.710099 TGTTTTTGGAGGAATCTACACATCC 59.290 40.000 0.00 0.00 32.60 3.51
535 539 5.512942 TTTTGGAGGAATCTACACATCCA 57.487 39.130 0.00 0.00 43.55 3.41
536 540 4.487714 TTGGAGGAATCTACACATCCAC 57.512 45.455 0.00 0.00 44.61 4.02
538 542 3.706594 TGGAGGAATCTACACATCCACTC 59.293 47.826 0.00 0.00 41.07 3.51
539 543 3.706594 GGAGGAATCTACACATCCACTCA 59.293 47.826 0.00 0.00 37.02 3.41
540 544 4.162320 GGAGGAATCTACACATCCACTCAA 59.838 45.833 0.00 0.00 37.02 3.02
541 545 5.338381 GGAGGAATCTACACATCCACTCAAA 60.338 44.000 0.00 0.00 37.02 2.69
542 546 6.126863 AGGAATCTACACATCCACTCAAAA 57.873 37.500 0.00 0.00 35.62 2.44
543 547 5.940470 AGGAATCTACACATCCACTCAAAAC 59.060 40.000 0.00 0.00 35.62 2.43
544 548 5.940470 GGAATCTACACATCCACTCAAAACT 59.060 40.000 0.00 0.00 33.30 2.66
546 550 5.545063 TCTACACATCCACTCAAAACTCA 57.455 39.130 0.00 0.00 0.00 3.41
547 551 6.114187 TCTACACATCCACTCAAAACTCAT 57.886 37.500 0.00 0.00 0.00 2.90
548 552 6.533730 TCTACACATCCACTCAAAACTCATT 58.466 36.000 0.00 0.00 0.00 2.57
550 554 6.469782 ACACATCCACTCAAAACTCATTTT 57.530 33.333 0.00 0.00 38.61 1.82
561 565 5.277825 CAAAACTCATTTTGTGCGTAGGAA 58.722 37.500 4.66 0.00 46.47 3.36
563 567 3.472652 ACTCATTTTGTGCGTAGGAACA 58.527 40.909 0.00 0.00 0.00 3.18
564 568 3.880490 ACTCATTTTGTGCGTAGGAACAA 59.120 39.130 4.82 4.82 34.57 2.83
565 569 4.024048 ACTCATTTTGTGCGTAGGAACAAG 60.024 41.667 8.89 0.52 37.57 3.16
566 570 3.252215 TCATTTTGTGCGTAGGAACAAGG 59.748 43.478 8.89 4.26 37.57 3.61
567 571 0.948678 TTTGTGCGTAGGAACAAGGC 59.051 50.000 8.89 0.00 37.57 4.35
568 572 0.179043 TTGTGCGTAGGAACAAGGCA 60.179 50.000 4.82 0.00 35.54 4.75
569 573 0.602638 TGTGCGTAGGAACAAGGCAG 60.603 55.000 0.00 0.00 38.31 4.85
570 574 1.003839 TGCGTAGGAACAAGGCAGG 60.004 57.895 0.00 0.00 33.17 4.85
571 575 1.295423 GCGTAGGAACAAGGCAGGA 59.705 57.895 0.00 0.00 0.00 3.86
572 576 1.019805 GCGTAGGAACAAGGCAGGAC 61.020 60.000 0.00 0.00 0.00 3.85
573 577 0.320374 CGTAGGAACAAGGCAGGACA 59.680 55.000 0.00 0.00 0.00 4.02
574 578 1.066143 CGTAGGAACAAGGCAGGACAT 60.066 52.381 0.00 0.00 0.00 3.06
575 579 2.615493 CGTAGGAACAAGGCAGGACATT 60.615 50.000 0.00 0.00 0.00 2.71
576 580 2.683211 AGGAACAAGGCAGGACATTT 57.317 45.000 0.00 0.00 0.00 2.32
593 597 6.974965 GGACATTTCCTTAGGATAGCAAATG 58.025 40.000 16.66 16.66 39.13 2.32
594 598 6.396829 ACATTTCCTTAGGATAGCAAATGC 57.603 37.500 17.67 0.00 42.49 3.56
595 599 5.302823 ACATTTCCTTAGGATAGCAAATGCC 59.697 40.000 17.67 0.00 43.38 4.40
596 600 4.518278 TTCCTTAGGATAGCAAATGCCA 57.482 40.909 0.12 0.00 43.38 4.92
597 601 4.729552 TCCTTAGGATAGCAAATGCCAT 57.270 40.909 0.00 0.00 43.38 4.40
606 610 6.579666 GATAGCAAATGCCATCCTATCAAA 57.420 37.500 0.94 0.00 43.38 2.69
607 611 7.166691 GATAGCAAATGCCATCCTATCAAAT 57.833 36.000 0.94 0.00 43.38 2.32
608 612 5.881923 AGCAAATGCCATCCTATCAAATT 57.118 34.783 0.94 0.00 43.38 1.82
609 613 5.850614 AGCAAATGCCATCCTATCAAATTC 58.149 37.500 0.94 0.00 43.38 2.17
610 614 4.992951 GCAAATGCCATCCTATCAAATTCC 59.007 41.667 0.00 0.00 34.31 3.01
611 615 5.221581 GCAAATGCCATCCTATCAAATTCCT 60.222 40.000 0.00 0.00 34.31 3.36
612 616 6.015180 GCAAATGCCATCCTATCAAATTCCTA 60.015 38.462 0.00 0.00 34.31 2.94
613 617 7.310237 GCAAATGCCATCCTATCAAATTCCTAT 60.310 37.037 0.00 0.00 34.31 2.57
615 619 8.814038 AATGCCATCCTATCAAATTCCTATAC 57.186 34.615 0.00 0.00 0.00 1.47
616 620 7.574021 TGCCATCCTATCAAATTCCTATACT 57.426 36.000 0.00 0.00 0.00 2.12
647 651 9.540538 TTAATTCCTATGTTTTGATTTCCTCCA 57.459 29.630 0.00 0.00 0.00 3.86
648 652 8.434589 AATTCCTATGTTTTGATTTCCTCCAA 57.565 30.769 0.00 0.00 0.00 3.53
649 653 7.847711 TTCCTATGTTTTGATTTCCTCCAAA 57.152 32.000 0.00 0.00 0.00 3.28
650 654 7.227049 TCCTATGTTTTGATTTCCTCCAAAC 57.773 36.000 0.00 0.00 39.05 2.93
651 655 6.210584 TCCTATGTTTTGATTTCCTCCAAACC 59.789 38.462 0.00 0.00 38.24 3.27
652 656 4.314740 TGTTTTGATTTCCTCCAAACCG 57.685 40.909 0.00 0.00 38.24 4.44
654 658 4.402793 TGTTTTGATTTCCTCCAAACCGAA 59.597 37.500 0.00 0.00 38.24 4.30
655 659 5.069781 TGTTTTGATTTCCTCCAAACCGAAT 59.930 36.000 0.00 0.00 38.24 3.34
656 660 4.782019 TTGATTTCCTCCAAACCGAATG 57.218 40.909 0.00 0.00 0.00 2.67
660 664 0.035439 TCCTCCAAACCGAATGAGGC 60.035 55.000 0.00 0.00 43.33 4.70
662 666 0.035056 CTCCAAACCGAATGAGGCCT 60.035 55.000 3.86 3.86 33.69 5.19
663 667 0.404040 TCCAAACCGAATGAGGCCTT 59.596 50.000 6.77 0.00 33.69 4.35
679 683 5.048846 AGGCCTTAGACAAAAGAGTCAAA 57.951 39.130 0.00 0.00 40.98 2.69
698 702 4.830765 CGGCGGGAATCTGCGGAA 62.831 66.667 0.00 0.00 45.93 4.30
699 703 2.437716 GGCGGGAATCTGCGGAAA 60.438 61.111 0.00 0.00 45.93 3.13
701 705 1.591504 GGCGGGAATCTGCGGAAAAA 61.592 55.000 0.00 0.00 45.93 1.94
755 759 0.898320 CATCTCTCCAACCCAGTCGT 59.102 55.000 0.00 0.00 0.00 4.34
756 760 1.134965 CATCTCTCCAACCCAGTCGTC 60.135 57.143 0.00 0.00 0.00 4.20
758 762 0.244994 CTCTCCAACCCAGTCGTCTG 59.755 60.000 2.40 2.40 41.01 3.51
759 763 0.469331 TCTCCAACCCAGTCGTCTGT 60.469 55.000 8.82 0.00 39.82 3.41
760 764 0.393077 CTCCAACCCAGTCGTCTGTT 59.607 55.000 8.82 0.00 39.82 3.16
761 765 0.834612 TCCAACCCAGTCGTCTGTTT 59.165 50.000 8.82 0.00 39.82 2.83
762 766 1.210967 TCCAACCCAGTCGTCTGTTTT 59.789 47.619 8.82 0.00 39.82 2.43
763 767 1.602377 CCAACCCAGTCGTCTGTTTTC 59.398 52.381 8.82 0.00 39.82 2.29
764 768 2.561569 CAACCCAGTCGTCTGTTTTCT 58.438 47.619 8.82 0.00 39.82 2.52
765 769 2.943033 CAACCCAGTCGTCTGTTTTCTT 59.057 45.455 8.82 0.00 39.82 2.52
766 770 3.277142 ACCCAGTCGTCTGTTTTCTTT 57.723 42.857 8.82 0.00 39.82 2.52
767 771 3.617284 ACCCAGTCGTCTGTTTTCTTTT 58.383 40.909 8.82 0.00 39.82 2.27
768 772 4.014406 ACCCAGTCGTCTGTTTTCTTTTT 58.986 39.130 8.82 0.00 39.82 1.94
769 773 4.142469 ACCCAGTCGTCTGTTTTCTTTTTG 60.142 41.667 8.82 0.00 39.82 2.44
770 774 4.351192 CCAGTCGTCTGTTTTCTTTTTGG 58.649 43.478 8.82 0.00 39.82 3.28
771 775 4.351192 CAGTCGTCTGTTTTCTTTTTGGG 58.649 43.478 1.16 0.00 36.97 4.12
773 777 2.691011 TCGTCTGTTTTCTTTTTGGGGG 59.309 45.455 0.00 0.00 0.00 5.40
774 778 2.429250 CGTCTGTTTTCTTTTTGGGGGT 59.571 45.455 0.00 0.00 0.00 4.95
776 780 4.439057 GTCTGTTTTCTTTTTGGGGGTTC 58.561 43.478 0.00 0.00 0.00 3.62
777 781 3.131400 TCTGTTTTCTTTTTGGGGGTTCG 59.869 43.478 0.00 0.00 0.00 3.95
778 782 3.097614 TGTTTTCTTTTTGGGGGTTCGA 58.902 40.909 0.00 0.00 0.00 3.71
779 783 3.514309 TGTTTTCTTTTTGGGGGTTCGAA 59.486 39.130 0.00 0.00 0.00 3.71
781 785 2.740506 TCTTTTTGGGGGTTCGAACT 57.259 45.000 26.32 0.00 0.00 3.01
782 786 3.021177 TCTTTTTGGGGGTTCGAACTT 57.979 42.857 26.32 0.00 0.00 2.66
783 787 2.953648 TCTTTTTGGGGGTTCGAACTTC 59.046 45.455 26.32 18.25 0.00 3.01
784 788 2.740506 TTTTGGGGGTTCGAACTTCT 57.259 45.000 26.32 0.00 0.00 2.85
786 790 3.860968 TTTGGGGGTTCGAACTTCTAA 57.139 42.857 26.32 18.61 0.00 2.10
787 791 2.845363 TGGGGGTTCGAACTTCTAAC 57.155 50.000 26.32 9.59 0.00 2.34
792 796 3.397849 GGTTCGAACTTCTAACCCAGT 57.602 47.619 26.32 0.00 36.53 4.00
793 797 4.525912 GGTTCGAACTTCTAACCCAGTA 57.474 45.455 26.32 0.00 36.53 2.74
797 801 6.700520 GGTTCGAACTTCTAACCCAGTATATG 59.299 42.308 26.32 0.00 36.53 1.78
1148 2582 2.363680 TGTGCGTTGGGTTGATGAATTT 59.636 40.909 0.00 0.00 0.00 1.82
1173 2631 4.970662 TCAATTGCTCTGGTGATTAAGC 57.029 40.909 0.00 0.00 35.31 3.09
1254 2712 6.039717 ACTCAGTTGTTCACATGCTTGTTTAT 59.960 34.615 1.83 0.00 32.34 1.40
1328 4229 8.726988 TCTAGTTAATGTTGGAACTAAACATGC 58.273 33.333 2.78 0.00 45.25 4.06
1426 4487 5.601662 CTGTCCTGAAGTAAAGTTGACAGA 58.398 41.667 10.38 0.00 46.88 3.41
1427 4488 5.601662 TGTCCTGAAGTAAAGTTGACAGAG 58.398 41.667 0.00 0.00 0.00 3.35
1607 4691 7.944554 TCTTCAAGATCACAAATTAGGGTCTTT 59.055 33.333 0.00 0.00 0.00 2.52
1618 4702 9.357161 ACAAATTAGGGTCTTTTAACACATGTA 57.643 29.630 0.00 0.00 0.00 2.29
1680 4764 3.126000 GCAGGAGTTGAGTTATGTTCTGC 59.874 47.826 0.00 0.00 38.31 4.26
1935 5052 3.308866 GCGGAAGGTATATGTGTTGTGAC 59.691 47.826 0.00 0.00 0.00 3.67
2344 5465 2.133281 ACTGCATTATCAGCTTGCCA 57.867 45.000 4.93 0.00 37.59 4.92
2599 5726 7.099266 TCTCTCTCTTGATCTCAAAGCTAAG 57.901 40.000 0.00 0.00 35.15 2.18
2690 5818 6.373779 AGTGACATCGAAATGCTTTTAGTTG 58.626 36.000 11.92 11.92 36.26 3.16
2763 5891 5.295540 GCCTTCTTCTGCCTTCTAACTAATG 59.704 44.000 0.00 0.00 0.00 1.90
2783 5916 4.213564 TGTGTGTTGCCATTTCCTTTTT 57.786 36.364 0.00 0.00 0.00 1.94
2997 6135 0.105913 AATCCTCTCCCTCCCTCGAC 60.106 60.000 0.00 0.00 0.00 4.20
3339 6536 9.489084 GGTCATTGTTACATGATAAGTATGCTA 57.511 33.333 0.00 0.00 0.00 3.49
3349 6546 7.763528 ACATGATAAGTATGCTATTAGCTCTGC 59.236 37.037 16.29 7.76 42.97 4.26
3350 6547 6.634805 TGATAAGTATGCTATTAGCTCTGCC 58.365 40.000 16.29 1.32 42.97 4.85
3351 6548 3.584406 AGTATGCTATTAGCTCTGCCG 57.416 47.619 16.29 0.00 42.97 5.69
3352 6549 3.157881 AGTATGCTATTAGCTCTGCCGA 58.842 45.455 16.29 0.00 42.97 5.54
3353 6550 2.739885 ATGCTATTAGCTCTGCCGAG 57.260 50.000 16.29 0.00 42.97 4.63
3354 6551 1.692411 TGCTATTAGCTCTGCCGAGA 58.308 50.000 16.29 0.00 42.97 4.04
3356 6553 1.611491 GCTATTAGCTCTGCCGAGAGT 59.389 52.381 9.60 0.00 46.76 3.24
3359 6556 0.811915 TTAGCTCTGCCGAGAGTGTC 59.188 55.000 9.60 0.00 46.76 3.67
3360 6557 0.034960 TAGCTCTGCCGAGAGTGTCT 60.035 55.000 9.60 0.00 46.76 3.41
3361 6558 1.138671 GCTCTGCCGAGAGTGTCTC 59.861 63.158 9.60 0.00 46.76 3.36
3362 6559 1.806568 CTCTGCCGAGAGTGTCTCC 59.193 63.158 0.00 0.00 40.34 3.71
3364 6561 0.618981 TCTGCCGAGAGTGTCTCCTA 59.381 55.000 0.00 0.00 40.34 2.94
3365 6562 1.213182 TCTGCCGAGAGTGTCTCCTAT 59.787 52.381 0.00 0.00 40.34 2.57
3366 6563 1.336440 CTGCCGAGAGTGTCTCCTATG 59.664 57.143 0.00 0.00 40.34 2.23
3367 6564 0.671251 GCCGAGAGTGTCTCCTATGG 59.329 60.000 0.00 0.00 40.34 2.74
3368 6565 0.671251 CCGAGAGTGTCTCCTATGGC 59.329 60.000 0.00 0.00 40.34 4.40
3369 6566 1.393603 CGAGAGTGTCTCCTATGGCA 58.606 55.000 0.00 0.00 40.34 4.92
3370 6567 1.751351 CGAGAGTGTCTCCTATGGCAA 59.249 52.381 0.00 0.00 40.34 4.52
3371 6568 2.480416 CGAGAGTGTCTCCTATGGCAAC 60.480 54.545 0.00 0.00 40.34 4.17
3372 6569 2.763448 GAGAGTGTCTCCTATGGCAACT 59.237 50.000 0.00 0.00 37.55 3.16
3373 6570 2.763448 AGAGTGTCTCCTATGGCAACTC 59.237 50.000 0.00 0.00 37.61 3.01
3374 6571 1.834263 AGTGTCTCCTATGGCAACTCC 59.166 52.381 0.00 0.00 37.61 3.85
3394 6610 1.196127 CGTAGGTTCGTTTTGCTTCCC 59.804 52.381 0.00 0.00 0.00 3.97
3428 6644 6.833342 ATTTGAAATTCAAGACTTGTGTGC 57.167 33.333 14.75 1.55 37.70 4.57
3474 6690 1.020437 GCTTCATGAGGCCTAGTTGC 58.980 55.000 18.56 1.77 0.00 4.17
3525 6741 4.141642 TGCTCTGCTAAATCTGCTAATGGA 60.142 41.667 0.00 0.00 0.00 3.41
3548 6764 8.908903 TGGAACTATTGCTTTCTTACTTTCAAA 58.091 29.630 0.00 0.00 0.00 2.69
3584 6800 4.743651 GCCTGATGCTATTGTAGTAGGCAA 60.744 45.833 14.01 0.00 46.53 4.52
3598 6814 6.489022 TGTAGTAGGCAACACAGATACGATAT 59.511 38.462 0.00 0.00 41.41 1.63
3606 6822 6.563010 GCAACACAGATACGATATTTGAGAGC 60.563 42.308 0.00 0.00 0.00 4.09
3607 6823 6.149129 ACACAGATACGATATTTGAGAGCA 57.851 37.500 0.00 0.00 0.00 4.26
3608 6824 5.980116 ACACAGATACGATATTTGAGAGCAC 59.020 40.000 0.00 0.00 0.00 4.40
3609 6825 6.183360 ACACAGATACGATATTTGAGAGCACT 60.183 38.462 0.00 0.00 0.00 4.40
3610 6826 6.699204 CACAGATACGATATTTGAGAGCACTT 59.301 38.462 0.00 0.00 0.00 3.16
3611 6827 6.920758 ACAGATACGATATTTGAGAGCACTTC 59.079 38.462 0.00 0.00 0.00 3.01
3612 6828 6.920210 CAGATACGATATTTGAGAGCACTTCA 59.080 38.462 0.00 0.00 0.00 3.02
3613 6829 7.436376 CAGATACGATATTTGAGAGCACTTCAA 59.564 37.037 0.00 0.00 0.00 2.69
3614 6830 7.981789 AGATACGATATTTGAGAGCACTTCAAA 59.018 33.333 11.14 11.14 37.69 2.69
3615 6831 6.414408 ACGATATTTGAGAGCACTTCAAAG 57.586 37.500 13.31 5.35 36.89 2.77
3616 6832 5.352569 ACGATATTTGAGAGCACTTCAAAGG 59.647 40.000 13.31 7.35 36.89 3.11
3617 6833 5.582269 CGATATTTGAGAGCACTTCAAAGGA 59.418 40.000 13.31 6.83 36.89 3.36
3618 6834 6.259608 CGATATTTGAGAGCACTTCAAAGGAT 59.740 38.462 13.31 10.02 36.89 3.24
3619 6835 5.640189 ATTTGAGAGCACTTCAAAGGATG 57.360 39.130 13.31 0.00 36.89 3.51
3620 6836 4.356405 TTGAGAGCACTTCAAAGGATGA 57.644 40.909 0.00 0.00 35.85 2.92
3621 6837 4.564782 TGAGAGCACTTCAAAGGATGAT 57.435 40.909 0.00 0.00 38.03 2.45
3622 6838 4.259356 TGAGAGCACTTCAAAGGATGATG 58.741 43.478 0.00 0.00 38.03 3.07
3623 6839 4.019950 TGAGAGCACTTCAAAGGATGATGA 60.020 41.667 0.00 0.00 38.03 2.92
3624 6840 4.515361 AGAGCACTTCAAAGGATGATGAG 58.485 43.478 0.00 0.00 38.03 2.90
3625 6841 3.015327 AGCACTTCAAAGGATGATGAGC 58.985 45.455 5.90 5.90 44.57 4.26
3626 6842 3.015327 GCACTTCAAAGGATGATGAGCT 58.985 45.455 0.00 0.00 42.53 4.09
3627 6843 3.442977 GCACTTCAAAGGATGATGAGCTT 59.557 43.478 0.00 0.00 42.53 3.74
3628 6844 4.637534 GCACTTCAAAGGATGATGAGCTTA 59.362 41.667 0.00 0.00 42.53 3.09
3629 6845 5.448360 GCACTTCAAAGGATGATGAGCTTAC 60.448 44.000 0.00 0.00 42.53 2.34
3630 6846 5.065731 CACTTCAAAGGATGATGAGCTTACC 59.934 44.000 0.00 0.00 38.03 2.85
3631 6847 4.156455 TCAAAGGATGATGAGCTTACCC 57.844 45.455 0.00 0.00 31.50 3.69
3632 6848 3.523157 TCAAAGGATGATGAGCTTACCCA 59.477 43.478 0.00 0.00 31.50 4.51
3651 6867 2.261345 CAAAGGTTTGCATACATGGCG 58.739 47.619 9.57 0.00 0.00 5.69
3661 6877 2.874701 GCATACATGGCGAACTCTCAAT 59.125 45.455 0.00 0.00 0.00 2.57
3724 6940 9.889128 TTGATGATATGTCTATTTCTGTTGTCA 57.111 29.630 0.00 0.00 0.00 3.58
3734 6950 7.649306 GTCTATTTCTGTTGTCATGCTTTGTTT 59.351 33.333 0.00 0.00 0.00 2.83
3736 6952 7.935338 ATTTCTGTTGTCATGCTTTGTTTAG 57.065 32.000 0.00 0.00 0.00 1.85
3742 6958 5.168526 TGTCATGCTTTGTTTAGTGTGTC 57.831 39.130 0.00 0.00 0.00 3.67
3745 6961 3.691049 TGCTTTGTTTAGTGTGTCTGC 57.309 42.857 0.00 0.00 0.00 4.26
3778 6994 6.148264 CACTTGGATGCTCTTTTCTTTCTTC 58.852 40.000 0.00 0.00 0.00 2.87
3787 7003 3.560068 TCTTTTCTTTCTTCGTGTGCTCC 59.440 43.478 0.00 0.00 0.00 4.70
3789 7005 1.048601 TCTTTCTTCGTGTGCTCCCT 58.951 50.000 0.00 0.00 0.00 4.20
3795 7011 1.001378 CTTCGTGTGCTCCCTTTTTGG 60.001 52.381 0.00 0.00 0.00 3.28
3817 7033 2.820037 GACGCTTGCTACTGGGGC 60.820 66.667 0.00 0.00 0.00 5.80
3826 7042 1.196012 GCTACTGGGGCTAGAGTTGT 58.804 55.000 0.00 0.00 0.00 3.32
3827 7043 1.555533 GCTACTGGGGCTAGAGTTGTT 59.444 52.381 0.00 0.00 0.00 2.83
3828 7044 2.678190 GCTACTGGGGCTAGAGTTGTTG 60.678 54.545 0.00 0.00 0.00 3.33
3829 7045 1.435256 ACTGGGGCTAGAGTTGTTGT 58.565 50.000 0.00 0.00 0.00 3.32
3830 7046 1.348036 ACTGGGGCTAGAGTTGTTGTC 59.652 52.381 0.00 0.00 0.00 3.18
3831 7047 0.320374 TGGGGCTAGAGTTGTTGTCG 59.680 55.000 0.00 0.00 0.00 4.35
3832 7048 0.606604 GGGGCTAGAGTTGTTGTCGA 59.393 55.000 0.00 0.00 0.00 4.20
3833 7049 1.001633 GGGGCTAGAGTTGTTGTCGAA 59.998 52.381 0.00 0.00 0.00 3.71
3834 7050 2.549349 GGGGCTAGAGTTGTTGTCGAAA 60.549 50.000 0.00 0.00 0.00 3.46
3867 7083 1.544246 AGCCGTGCTATATATCGTGCA 59.456 47.619 0.00 0.00 36.99 4.57
3871 7087 2.324860 GTGCTATATATCGTGCACGCA 58.675 47.619 33.63 23.33 44.60 5.24
3888 7106 4.236935 CACGCAGGAAAAGCATGTTTTAT 58.763 39.130 8.03 0.00 0.00 1.40
3893 7111 3.190535 AGGAAAAGCATGTTTTATCGCGT 59.809 39.130 8.03 0.00 0.00 6.01
3921 7139 4.617520 TTGGCGCGCTCCAACAGA 62.618 61.111 32.29 6.05 40.92 3.41
4064 7335 2.763902 CCGCCCCCTTCTTTCCTT 59.236 61.111 0.00 0.00 0.00 3.36
4166 7468 4.082523 GCTCCAGCTACCGTGGCA 62.083 66.667 9.77 0.00 38.21 4.92
4171 7473 3.075005 AGCTACCGTGGCATCCGT 61.075 61.111 9.77 0.00 0.00 4.69
4175 7477 1.945354 CTACCGTGGCATCCGTGTCT 61.945 60.000 0.00 0.00 0.00 3.41
4182 7485 1.675641 GCATCCGTGTCTGCCCTTT 60.676 57.895 0.00 0.00 32.15 3.11
4312 7615 0.172578 CGAGGCCACGTTCACAGATA 59.827 55.000 15.01 0.00 0.00 1.98
4452 7757 1.442148 GGACGAGTACTCCATGGCC 59.558 63.158 17.23 11.11 0.00 5.36
4514 7819 1.990060 CCTTCTGGGCGGAGAGGAA 60.990 63.158 0.00 0.00 0.00 3.36
4604 7910 1.132640 GACATGCGTCGACCTTTGC 59.867 57.895 10.58 8.13 31.07 3.68
4668 7979 0.251832 ACACCACTGAGGAGGACGAT 60.252 55.000 0.00 0.00 41.22 3.73
4703 8017 9.520204 GTAGTTTCTAGTATATTTGCACCGTAA 57.480 33.333 0.00 0.00 0.00 3.18
4715 8029 9.959749 ATATTTGCACCGTAATATAGTTTTTGG 57.040 29.630 0.45 0.00 0.00 3.28
4716 8030 5.238006 TGCACCGTAATATAGTTTTTGGC 57.762 39.130 0.00 0.00 0.00 4.52
4717 8031 4.944930 TGCACCGTAATATAGTTTTTGGCT 59.055 37.500 0.00 0.00 0.00 4.75
4718 8032 6.114089 TGCACCGTAATATAGTTTTTGGCTA 58.886 36.000 0.00 0.00 0.00 3.93
4719 8033 6.259167 TGCACCGTAATATAGTTTTTGGCTAG 59.741 38.462 0.00 0.00 0.00 3.42
4720 8034 6.656003 CACCGTAATATAGTTTTTGGCTAGC 58.344 40.000 6.04 6.04 0.00 3.42
4721 8035 6.482308 CACCGTAATATAGTTTTTGGCTAGCT 59.518 38.462 15.72 0.00 0.00 3.32
4722 8036 7.012044 CACCGTAATATAGTTTTTGGCTAGCTT 59.988 37.037 15.72 0.00 0.00 3.74
4723 8037 7.226128 ACCGTAATATAGTTTTTGGCTAGCTTC 59.774 37.037 15.72 0.00 0.00 3.86
4724 8038 7.281484 CGTAATATAGTTTTTGGCTAGCTTCG 58.719 38.462 15.72 0.00 0.00 3.79
4725 8039 5.674933 ATATAGTTTTTGGCTAGCTTCGC 57.325 39.130 15.72 0.00 0.00 4.70
4731 8045 2.512515 GGCTAGCTTCGCCACTGG 60.513 66.667 15.72 0.00 46.77 4.00
4732 8046 2.579201 GCTAGCTTCGCCACTGGA 59.421 61.111 7.70 0.00 0.00 3.86
4733 8047 1.079127 GCTAGCTTCGCCACTGGAA 60.079 57.895 7.70 0.00 0.00 3.53
4734 8048 0.462759 GCTAGCTTCGCCACTGGAAT 60.463 55.000 7.70 0.00 0.00 3.01
4735 8049 1.202533 GCTAGCTTCGCCACTGGAATA 60.203 52.381 7.70 0.00 0.00 1.75
4736 8050 2.474816 CTAGCTTCGCCACTGGAATAC 58.525 52.381 0.00 0.00 0.00 1.89
4737 8051 0.613260 AGCTTCGCCACTGGAATACA 59.387 50.000 0.00 0.00 0.00 2.29
4738 8052 1.003118 AGCTTCGCCACTGGAATACAA 59.997 47.619 0.00 0.00 0.00 2.41
4739 8053 2.017049 GCTTCGCCACTGGAATACAAT 58.983 47.619 0.00 0.00 0.00 2.71
4740 8054 2.223340 GCTTCGCCACTGGAATACAATG 60.223 50.000 0.00 0.00 0.00 2.82
4741 8055 2.036958 TCGCCACTGGAATACAATGG 57.963 50.000 0.00 0.00 0.00 3.16
4742 8056 1.280710 TCGCCACTGGAATACAATGGT 59.719 47.619 0.00 0.00 32.71 3.55
4743 8057 1.670811 CGCCACTGGAATACAATGGTC 59.329 52.381 0.00 0.00 32.71 4.02
4744 8058 1.670811 GCCACTGGAATACAATGGTCG 59.329 52.381 0.00 0.00 32.71 4.79
4745 8059 2.679639 GCCACTGGAATACAATGGTCGA 60.680 50.000 0.00 0.00 32.71 4.20
4746 8060 2.936498 CCACTGGAATACAATGGTCGAC 59.064 50.000 7.13 7.13 0.00 4.20
4747 8061 3.369471 CCACTGGAATACAATGGTCGACT 60.369 47.826 16.46 0.00 0.00 4.18
4748 8062 4.142026 CCACTGGAATACAATGGTCGACTA 60.142 45.833 16.46 10.40 0.00 2.59
4749 8063 5.416083 CACTGGAATACAATGGTCGACTAA 58.584 41.667 16.46 4.64 0.00 2.24
4750 8064 5.520288 CACTGGAATACAATGGTCGACTAAG 59.480 44.000 16.46 9.25 0.00 2.18
4751 8065 5.187186 ACTGGAATACAATGGTCGACTAAGT 59.813 40.000 16.46 14.60 0.00 2.24
4752 8066 6.045072 TGGAATACAATGGTCGACTAAGTT 57.955 37.500 16.46 0.00 0.00 2.66
4753 8067 6.469410 TGGAATACAATGGTCGACTAAGTTT 58.531 36.000 16.46 5.37 0.00 2.66
4754 8068 6.592607 TGGAATACAATGGTCGACTAAGTTTC 59.407 38.462 16.46 15.72 0.00 2.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 6.215845 CACTAGGTTTTCAAACTCCAAATGG 58.784 40.000 2.55 0.00 38.89 3.16
61 64 6.316890 GTGGTTTGAAAGTGACACTAGGTTTA 59.683 38.462 8.91 0.00 0.00 2.01
76 79 3.131223 TCGGCTTCATTTGTGGTTTGAAA 59.869 39.130 0.00 0.00 0.00 2.69
97 101 7.015682 TGAGATCAGGGGTATCTACATCTTTTC 59.984 40.741 0.00 0.00 33.82 2.29
202 206 5.652994 TTTCCAGTTTGTACACAAAGCTT 57.347 34.783 7.75 0.00 45.36 3.74
203 207 5.652994 TTTTCCAGTTTGTACACAAAGCT 57.347 34.783 7.75 6.08 45.36 3.74
204 208 6.019881 GTCATTTTCCAGTTTGTACACAAAGC 60.020 38.462 7.75 4.12 45.36 3.51
205 209 6.475402 GGTCATTTTCCAGTTTGTACACAAAG 59.525 38.462 7.75 0.00 45.36 2.77
206 210 6.153680 AGGTCATTTTCCAGTTTGTACACAAA 59.846 34.615 3.44 3.44 42.90 2.83
207 211 5.654650 AGGTCATTTTCCAGTTTGTACACAA 59.345 36.000 0.00 0.00 0.00 3.33
208 212 5.067153 CAGGTCATTTTCCAGTTTGTACACA 59.933 40.000 0.00 0.00 0.00 3.72
209 213 5.298276 TCAGGTCATTTTCCAGTTTGTACAC 59.702 40.000 0.00 0.00 0.00 2.90
210 214 5.441500 TCAGGTCATTTTCCAGTTTGTACA 58.558 37.500 0.00 0.00 0.00 2.90
211 215 6.575162 ATCAGGTCATTTTCCAGTTTGTAC 57.425 37.500 0.00 0.00 0.00 2.90
212 216 5.411361 CGATCAGGTCATTTTCCAGTTTGTA 59.589 40.000 0.00 0.00 0.00 2.41
213 217 4.216257 CGATCAGGTCATTTTCCAGTTTGT 59.784 41.667 0.00 0.00 0.00 2.83
214 218 4.216257 ACGATCAGGTCATTTTCCAGTTTG 59.784 41.667 0.00 0.00 0.00 2.93
216 220 4.003648 GACGATCAGGTCATTTTCCAGTT 58.996 43.478 0.00 0.00 36.91 3.16
217 221 3.600388 GACGATCAGGTCATTTTCCAGT 58.400 45.455 0.00 0.00 36.91 4.00
220 224 1.933853 CCGACGATCAGGTCATTTTCC 59.066 52.381 0.00 0.00 36.73 3.13
221 225 2.618053 ACCGACGATCAGGTCATTTTC 58.382 47.619 0.00 0.00 35.50 2.29
229 233 2.619177 AGTCATAAGACCGACGATCAGG 59.381 50.000 0.00 0.00 46.15 3.86
230 234 3.972950 AGTCATAAGACCGACGATCAG 57.027 47.619 0.00 0.00 46.15 2.90
231 235 3.181490 CCAAGTCATAAGACCGACGATCA 60.181 47.826 0.00 0.00 46.15 2.92
232 236 3.066342 TCCAAGTCATAAGACCGACGATC 59.934 47.826 0.00 0.00 46.15 3.69
233 237 3.021695 TCCAAGTCATAAGACCGACGAT 58.978 45.455 0.00 0.00 46.15 3.73
235 239 2.933495 TCCAAGTCATAAGACCGACG 57.067 50.000 0.00 0.00 46.15 5.12
236 240 4.567159 GTGAATCCAAGTCATAAGACCGAC 59.433 45.833 0.00 0.00 46.15 4.79
237 241 4.466370 AGTGAATCCAAGTCATAAGACCGA 59.534 41.667 0.00 0.00 46.15 4.69
238 242 4.759782 AGTGAATCCAAGTCATAAGACCG 58.240 43.478 0.00 0.00 46.15 4.79
240 244 7.103641 TGGTTAGTGAATCCAAGTCATAAGAC 58.896 38.462 0.00 0.00 45.31 3.01
241 245 7.252612 TGGTTAGTGAATCCAAGTCATAAGA 57.747 36.000 0.00 0.00 0.00 2.10
242 246 7.227512 GGATGGTTAGTGAATCCAAGTCATAAG 59.772 40.741 0.00 0.00 39.79 1.73
243 247 7.054124 GGATGGTTAGTGAATCCAAGTCATAA 58.946 38.462 0.00 0.00 39.79 1.90
245 249 5.044919 TGGATGGTTAGTGAATCCAAGTCAT 60.045 40.000 1.17 0.00 45.33 3.06
246 250 4.288366 TGGATGGTTAGTGAATCCAAGTCA 59.712 41.667 1.17 0.00 45.33 3.41
247 251 4.843728 TGGATGGTTAGTGAATCCAAGTC 58.156 43.478 1.17 0.00 45.33 3.01
253 257 3.316308 GGTGCATGGATGGTTAGTGAATC 59.684 47.826 0.00 0.00 0.00 2.52
255 259 2.040947 TGGTGCATGGATGGTTAGTGAA 59.959 45.455 0.00 0.00 0.00 3.18
256 260 1.632920 TGGTGCATGGATGGTTAGTGA 59.367 47.619 0.00 0.00 0.00 3.41
258 262 2.897271 TTGGTGCATGGATGGTTAGT 57.103 45.000 0.00 0.00 0.00 2.24
259 263 4.049546 CATTTGGTGCATGGATGGTTAG 57.950 45.455 0.00 0.00 0.00 2.34
272 276 1.444895 GCTCTTGCCGCATTTGGTG 60.445 57.895 0.00 0.00 0.00 4.17
273 277 2.964978 GCTCTTGCCGCATTTGGT 59.035 55.556 0.00 0.00 0.00 3.67
289 293 1.360192 GTTGCTTATCGCCCATGGC 59.640 57.895 6.09 0.58 46.75 4.40
290 294 0.466189 AGGTTGCTTATCGCCCATGG 60.466 55.000 4.14 4.14 38.05 3.66
291 295 1.066002 CAAGGTTGCTTATCGCCCATG 59.934 52.381 0.00 0.00 38.05 3.66
292 296 1.392589 CAAGGTTGCTTATCGCCCAT 58.607 50.000 0.00 0.00 38.05 4.00
323 327 9.447157 TCAAAACAAAGAAAAGAAATTCCATGT 57.553 25.926 0.00 0.00 32.93 3.21
333 337 8.934825 CCACTTTCATTCAAAACAAAGAAAAGA 58.065 29.630 0.00 0.00 31.49 2.52
336 340 6.597280 CCCCACTTTCATTCAAAACAAAGAAA 59.403 34.615 0.00 0.00 31.49 2.52
337 341 6.070538 TCCCCACTTTCATTCAAAACAAAGAA 60.071 34.615 0.00 0.00 31.49 2.52
338 342 5.423610 TCCCCACTTTCATTCAAAACAAAGA 59.576 36.000 0.00 0.00 31.49 2.52
340 344 5.683876 TCCCCACTTTCATTCAAAACAAA 57.316 34.783 0.00 0.00 0.00 2.83
341 345 5.683876 TTCCCCACTTTCATTCAAAACAA 57.316 34.783 0.00 0.00 0.00 2.83
344 348 7.288852 TGACTATTTCCCCACTTTCATTCAAAA 59.711 33.333 0.00 0.00 0.00 2.44
346 350 6.310941 TGACTATTTCCCCACTTTCATTCAA 58.689 36.000 0.00 0.00 0.00 2.69
348 352 7.775561 AGTATGACTATTTCCCCACTTTCATTC 59.224 37.037 0.00 0.00 0.00 2.67
350 354 7.213178 AGTATGACTATTTCCCCACTTTCAT 57.787 36.000 0.00 0.00 0.00 2.57
351 355 6.636454 AGTATGACTATTTCCCCACTTTCA 57.364 37.500 0.00 0.00 0.00 2.69
353 357 6.663523 CCAAAGTATGACTATTTCCCCACTTT 59.336 38.462 0.00 0.00 35.86 2.66
354 358 6.187682 CCAAAGTATGACTATTTCCCCACTT 58.812 40.000 0.00 0.00 0.00 3.16
355 359 5.340027 CCCAAAGTATGACTATTTCCCCACT 60.340 44.000 0.00 0.00 0.00 4.00
356 360 4.887655 CCCAAAGTATGACTATTTCCCCAC 59.112 45.833 0.00 0.00 0.00 4.61
357 361 4.630184 GCCCAAAGTATGACTATTTCCCCA 60.630 45.833 0.00 0.00 0.00 4.96
359 363 4.793201 AGCCCAAAGTATGACTATTTCCC 58.207 43.478 0.00 0.00 0.00 3.97
360 364 5.437060 TGAGCCCAAAGTATGACTATTTCC 58.563 41.667 0.00 0.00 0.00 3.13
361 365 7.519008 CGAATGAGCCCAAAGTATGACTATTTC 60.519 40.741 0.00 0.00 0.00 2.17
363 367 5.760253 CGAATGAGCCCAAAGTATGACTATT 59.240 40.000 0.00 0.00 0.00 1.73
364 368 5.300752 CGAATGAGCCCAAAGTATGACTAT 58.699 41.667 0.00 0.00 0.00 2.12
365 369 4.442893 CCGAATGAGCCCAAAGTATGACTA 60.443 45.833 0.00 0.00 0.00 2.59
366 370 3.535561 CGAATGAGCCCAAAGTATGACT 58.464 45.455 0.00 0.00 0.00 3.41
367 371 2.614057 CCGAATGAGCCCAAAGTATGAC 59.386 50.000 0.00 0.00 0.00 3.06
368 372 2.238646 ACCGAATGAGCCCAAAGTATGA 59.761 45.455 0.00 0.00 0.00 2.15
371 375 2.817258 CAAACCGAATGAGCCCAAAGTA 59.183 45.455 0.00 0.00 0.00 2.24
372 376 1.613437 CAAACCGAATGAGCCCAAAGT 59.387 47.619 0.00 0.00 0.00 2.66
374 378 0.965439 CCAAACCGAATGAGCCCAAA 59.035 50.000 0.00 0.00 0.00 3.28
375 379 0.111446 TCCAAACCGAATGAGCCCAA 59.889 50.000 0.00 0.00 0.00 4.12
378 382 0.035439 TCCTCCAAACCGAATGAGCC 60.035 55.000 0.00 0.00 0.00 4.70
379 383 2.044123 ATCCTCCAAACCGAATGAGC 57.956 50.000 0.00 0.00 0.00 4.26
380 384 4.265073 AGAAATCCTCCAAACCGAATGAG 58.735 43.478 0.00 0.00 0.00 2.90
382 386 6.428159 CCTATAGAAATCCTCCAAACCGAATG 59.572 42.308 0.00 0.00 0.00 2.67
383 387 6.329197 TCCTATAGAAATCCTCCAAACCGAAT 59.671 38.462 0.00 0.00 0.00 3.34
385 389 5.213519 TCCTATAGAAATCCTCCAAACCGA 58.786 41.667 0.00 0.00 0.00 4.69
386 390 5.546621 TCCTATAGAAATCCTCCAAACCG 57.453 43.478 0.00 0.00 0.00 4.44
387 391 8.467598 GTTTTTCCTATAGAAATCCTCCAAACC 58.532 37.037 0.00 0.00 43.93 3.27
388 392 8.182227 CGTTTTTCCTATAGAAATCCTCCAAAC 58.818 37.037 0.00 0.00 43.93 2.93
389 393 7.886446 ACGTTTTTCCTATAGAAATCCTCCAAA 59.114 33.333 0.00 0.00 43.93 3.28
390 394 7.399634 ACGTTTTTCCTATAGAAATCCTCCAA 58.600 34.615 0.00 0.00 43.93 3.53
391 395 6.954232 ACGTTTTTCCTATAGAAATCCTCCA 58.046 36.000 0.00 0.00 43.93 3.86
392 396 7.656542 CCTACGTTTTTCCTATAGAAATCCTCC 59.343 40.741 0.00 0.00 43.93 4.30
393 397 8.419442 TCCTACGTTTTTCCTATAGAAATCCTC 58.581 37.037 0.00 0.00 43.93 3.71
394 398 8.315220 TCCTACGTTTTTCCTATAGAAATCCT 57.685 34.615 0.00 0.00 43.93 3.24
395 399 8.824781 GTTCCTACGTTTTTCCTATAGAAATCC 58.175 37.037 0.00 0.00 43.93 3.01
397 401 9.729281 TTGTTCCTACGTTTTTCCTATAGAAAT 57.271 29.630 0.00 0.00 43.93 2.17
402 406 7.243604 TCCTTGTTCCTACGTTTTTCCTATA 57.756 36.000 0.00 0.00 0.00 1.31
403 407 6.117975 TCCTTGTTCCTACGTTTTTCCTAT 57.882 37.500 0.00 0.00 0.00 2.57
405 409 4.426736 TCCTTGTTCCTACGTTTTTCCT 57.573 40.909 0.00 0.00 0.00 3.36
406 410 5.458015 CAATCCTTGTTCCTACGTTTTTCC 58.542 41.667 0.00 0.00 0.00 3.13
407 411 4.915667 GCAATCCTTGTTCCTACGTTTTTC 59.084 41.667 0.00 0.00 0.00 2.29
408 412 4.339814 TGCAATCCTTGTTCCTACGTTTTT 59.660 37.500 0.00 0.00 0.00 1.94
409 413 3.886505 TGCAATCCTTGTTCCTACGTTTT 59.113 39.130 0.00 0.00 0.00 2.43
410 414 3.482436 TGCAATCCTTGTTCCTACGTTT 58.518 40.909 0.00 0.00 0.00 3.60
411 415 3.134574 TGCAATCCTTGTTCCTACGTT 57.865 42.857 0.00 0.00 0.00 3.99
413 417 3.809832 CCTATGCAATCCTTGTTCCTACG 59.190 47.826 0.00 0.00 0.00 3.51
417 421 5.659440 TTTTCCTATGCAATCCTTGTTCC 57.341 39.130 0.00 0.00 0.00 3.62
418 422 8.552083 AAATTTTTCCTATGCAATCCTTGTTC 57.448 30.769 0.00 0.00 0.00 3.18
419 423 8.377799 AGAAATTTTTCCTATGCAATCCTTGTT 58.622 29.630 0.00 0.00 37.92 2.83
420 424 7.910584 AGAAATTTTTCCTATGCAATCCTTGT 58.089 30.769 0.00 0.00 37.92 3.16
428 432 9.353431 TGCATCTATAGAAATTTTTCCTATGCA 57.647 29.630 6.52 10.39 38.37 3.96
443 447 8.589701 TCCTATAAACCGAATGCATCTATAGA 57.410 34.615 4.57 4.57 0.00 1.98
444 448 9.653287 TTTCCTATAAACCGAATGCATCTATAG 57.347 33.333 0.00 4.70 0.00 1.31
445 449 9.431887 GTTTCCTATAAACCGAATGCATCTATA 57.568 33.333 0.00 0.00 0.00 1.31
448 452 5.236478 CGTTTCCTATAAACCGAATGCATCT 59.764 40.000 0.00 0.00 0.00 2.90
449 453 5.440685 CGTTTCCTATAAACCGAATGCATC 58.559 41.667 0.00 0.00 0.00 3.91
452 456 3.614588 GCGTTTCCTATAAACCGAATGC 58.385 45.455 0.00 0.00 0.00 3.56
454 458 3.524541 ACGCGTTTCCTATAAACCGAAT 58.475 40.909 5.58 0.00 32.35 3.34
455 459 2.958213 ACGCGTTTCCTATAAACCGAA 58.042 42.857 5.58 0.00 32.35 4.30
457 461 2.214020 CGTACGCGTTTCCTATAAACCG 59.786 50.000 20.78 0.00 33.36 4.44
459 463 2.535574 CCCGTACGCGTTTCCTATAAAC 59.464 50.000 20.78 4.77 36.15 2.01
460 464 2.481104 CCCCGTACGCGTTTCCTATAAA 60.481 50.000 20.78 0.00 36.15 1.40
461 465 1.066908 CCCCGTACGCGTTTCCTATAA 59.933 52.381 20.78 0.00 36.15 0.98
462 466 0.667993 CCCCGTACGCGTTTCCTATA 59.332 55.000 20.78 0.00 36.15 1.31
464 468 1.037030 ATCCCCGTACGCGTTTCCTA 61.037 55.000 20.78 0.00 36.15 2.94
466 470 1.020861 AAATCCCCGTACGCGTTTCC 61.021 55.000 20.78 4.98 36.15 3.13
467 471 1.639280 TAAATCCCCGTACGCGTTTC 58.361 50.000 20.78 10.75 36.15 2.78
469 473 2.314323 ATTAAATCCCCGTACGCGTT 57.686 45.000 20.78 0.80 36.15 4.84
471 475 2.030007 TCCTATTAAATCCCCGTACGCG 60.030 50.000 10.49 3.53 37.95 6.01
473 477 6.928520 AGTATTCCTATTAAATCCCCGTACG 58.071 40.000 8.69 8.69 0.00 3.67
492 496 9.927668 CCAAAAACACAGGAAATGAATAGTATT 57.072 29.630 0.00 0.00 0.00 1.89
494 498 8.698973 TCCAAAAACACAGGAAATGAATAGTA 57.301 30.769 0.00 0.00 0.00 1.82
495 499 7.255942 CCTCCAAAAACACAGGAAATGAATAGT 60.256 37.037 0.00 0.00 0.00 2.12
497 501 6.780031 TCCTCCAAAAACACAGGAAATGAATA 59.220 34.615 0.00 0.00 31.78 1.75
499 503 4.959210 TCCTCCAAAAACACAGGAAATGAA 59.041 37.500 0.00 0.00 31.78 2.57
500 504 4.541705 TCCTCCAAAAACACAGGAAATGA 58.458 39.130 0.00 0.00 31.78 2.57
501 505 4.935352 TCCTCCAAAAACACAGGAAATG 57.065 40.909 0.00 0.00 31.78 2.32
502 506 5.840693 AGATTCCTCCAAAAACACAGGAAAT 59.159 36.000 3.45 0.00 45.92 2.17
504 508 4.803452 AGATTCCTCCAAAAACACAGGAA 58.197 39.130 1.83 1.83 46.65 3.36
505 509 4.453480 AGATTCCTCCAAAAACACAGGA 57.547 40.909 0.00 0.00 32.94 3.86
506 510 5.048713 GTGTAGATTCCTCCAAAAACACAGG 60.049 44.000 0.00 0.00 36.77 4.00
507 511 5.530915 TGTGTAGATTCCTCCAAAAACACAG 59.469 40.000 0.00 0.00 40.55 3.66
509 513 6.349363 GGATGTGTAGATTCCTCCAAAAACAC 60.349 42.308 0.00 0.00 37.18 3.32
510 514 5.710099 GGATGTGTAGATTCCTCCAAAAACA 59.290 40.000 0.00 0.00 0.00 2.83
511 515 5.710099 TGGATGTGTAGATTCCTCCAAAAAC 59.290 40.000 0.00 0.00 30.15 2.43
512 516 5.710099 GTGGATGTGTAGATTCCTCCAAAAA 59.290 40.000 0.00 0.00 34.75 1.94
513 517 5.014123 AGTGGATGTGTAGATTCCTCCAAAA 59.986 40.000 0.00 0.00 34.75 2.44
515 519 4.104086 AGTGGATGTGTAGATTCCTCCAA 58.896 43.478 0.00 0.00 34.75 3.53
517 521 3.706594 TGAGTGGATGTGTAGATTCCTCC 59.293 47.826 0.00 0.00 0.00 4.30
520 524 5.940470 AGTTTTGAGTGGATGTGTAGATTCC 59.060 40.000 0.00 0.00 0.00 3.01
521 525 6.650807 TGAGTTTTGAGTGGATGTGTAGATTC 59.349 38.462 0.00 0.00 0.00 2.52
523 527 6.114187 TGAGTTTTGAGTGGATGTGTAGAT 57.886 37.500 0.00 0.00 0.00 1.98
525 529 6.808008 AATGAGTTTTGAGTGGATGTGTAG 57.192 37.500 0.00 0.00 0.00 2.74
527 531 6.469782 AAAATGAGTTTTGAGTGGATGTGT 57.530 33.333 0.00 0.00 36.24 3.72
539 543 5.163602 TGTTCCTACGCACAAAATGAGTTTT 60.164 36.000 0.00 0.00 38.30 2.43
540 544 4.336993 TGTTCCTACGCACAAAATGAGTTT 59.663 37.500 0.00 0.00 38.30 2.66
541 545 3.880490 TGTTCCTACGCACAAAATGAGTT 59.120 39.130 0.00 0.00 38.30 3.01
542 546 3.472652 TGTTCCTACGCACAAAATGAGT 58.527 40.909 0.00 0.00 44.41 3.41
543 547 4.466828 CTTGTTCCTACGCACAAAATGAG 58.533 43.478 0.00 0.00 32.53 2.90
544 548 3.252215 CCTTGTTCCTACGCACAAAATGA 59.748 43.478 0.00 0.00 32.53 2.57
546 550 2.030274 GCCTTGTTCCTACGCACAAAAT 60.030 45.455 0.00 0.00 32.53 1.82
547 551 1.335496 GCCTTGTTCCTACGCACAAAA 59.665 47.619 0.00 0.00 32.53 2.44
548 552 0.948678 GCCTTGTTCCTACGCACAAA 59.051 50.000 0.00 0.00 32.53 2.83
550 554 0.602638 CTGCCTTGTTCCTACGCACA 60.603 55.000 0.00 0.00 0.00 4.57
551 555 1.298859 CCTGCCTTGTTCCTACGCAC 61.299 60.000 0.00 0.00 0.00 5.34
555 559 2.789409 ATGTCCTGCCTTGTTCCTAC 57.211 50.000 0.00 0.00 0.00 3.18
558 562 1.546029 GGAAATGTCCTGCCTTGTTCC 59.454 52.381 0.00 0.00 41.24 3.62
573 577 5.457686 TGGCATTTGCTATCCTAAGGAAAT 58.542 37.500 2.12 0.00 45.13 2.17
574 578 4.865905 TGGCATTTGCTATCCTAAGGAAA 58.134 39.130 2.12 0.00 40.46 3.13
575 579 4.518278 TGGCATTTGCTATCCTAAGGAA 57.482 40.909 2.12 0.00 41.70 3.36
576 580 4.729552 ATGGCATTTGCTATCCTAAGGA 57.270 40.909 0.00 0.00 37.75 3.36
585 589 6.015180 GGAATTTGATAGGATGGCATTTGCTA 60.015 38.462 0.00 0.00 41.70 3.49
586 590 5.221581 GGAATTTGATAGGATGGCATTTGCT 60.222 40.000 0.00 0.00 41.70 3.91
587 591 4.992951 GGAATTTGATAGGATGGCATTTGC 59.007 41.667 0.00 0.00 41.14 3.68
590 594 8.618385 AGTATAGGAATTTGATAGGATGGCATT 58.382 33.333 0.00 0.00 0.00 3.56
592 596 7.574021 AGTATAGGAATTTGATAGGATGGCA 57.426 36.000 0.00 0.00 0.00 4.92
621 625 9.540538 TGGAGGAAATCAAAACATAGGAATTAA 57.459 29.630 0.00 0.00 0.00 1.40
622 626 9.540538 TTGGAGGAAATCAAAACATAGGAATTA 57.459 29.630 0.00 0.00 0.00 1.40
623 627 8.434589 TTGGAGGAAATCAAAACATAGGAATT 57.565 30.769 0.00 0.00 0.00 2.17
624 628 8.314021 GTTTGGAGGAAATCAAAACATAGGAAT 58.686 33.333 3.53 0.00 46.97 3.01
625 629 7.666623 GTTTGGAGGAAATCAAAACATAGGAA 58.333 34.615 3.53 0.00 46.97 3.36
636 640 4.009675 CTCATTCGGTTTGGAGGAAATCA 58.990 43.478 0.00 0.00 0.00 2.57
637 641 4.622701 CTCATTCGGTTTGGAGGAAATC 57.377 45.455 0.00 0.00 0.00 2.17
643 647 0.035056 AGGCCTCATTCGGTTTGGAG 60.035 55.000 0.00 0.00 0.00 3.86
644 648 0.404040 AAGGCCTCATTCGGTTTGGA 59.596 50.000 5.23 0.00 0.00 3.53
646 650 2.678336 GTCTAAGGCCTCATTCGGTTTG 59.322 50.000 5.23 0.00 0.00 2.93
647 651 2.304761 TGTCTAAGGCCTCATTCGGTTT 59.695 45.455 5.23 0.00 0.00 3.27
648 652 1.906574 TGTCTAAGGCCTCATTCGGTT 59.093 47.619 5.23 0.00 0.00 4.44
649 653 1.568504 TGTCTAAGGCCTCATTCGGT 58.431 50.000 5.23 0.00 0.00 4.69
650 654 2.691409 TTGTCTAAGGCCTCATTCGG 57.309 50.000 5.23 0.00 0.00 4.30
651 655 4.253685 TCTTTTGTCTAAGGCCTCATTCG 58.746 43.478 5.23 0.00 0.00 3.34
652 656 5.249420 ACTCTTTTGTCTAAGGCCTCATTC 58.751 41.667 5.23 0.00 0.00 2.67
654 658 4.287067 TGACTCTTTTGTCTAAGGCCTCAT 59.713 41.667 5.23 0.00 37.79 2.90
655 659 3.646162 TGACTCTTTTGTCTAAGGCCTCA 59.354 43.478 5.23 0.00 37.79 3.86
656 660 4.273148 TGACTCTTTTGTCTAAGGCCTC 57.727 45.455 5.23 0.00 37.79 4.70
660 664 4.213482 CCGGTTTGACTCTTTTGTCTAAGG 59.787 45.833 0.00 0.00 37.79 2.69
662 666 3.562557 GCCGGTTTGACTCTTTTGTCTAA 59.437 43.478 1.90 0.00 37.79 2.10
663 667 3.135994 GCCGGTTTGACTCTTTTGTCTA 58.864 45.455 1.90 0.00 37.79 2.59
701 705 5.508200 TTTGTTCACTGCGTAGGATTTTT 57.492 34.783 5.26 0.00 0.00 1.94
703 707 5.705609 ATTTTGTTCACTGCGTAGGATTT 57.294 34.783 5.26 0.00 0.00 2.17
704 708 5.705609 AATTTTGTTCACTGCGTAGGATT 57.294 34.783 5.26 0.00 0.00 3.01
705 709 5.705609 AAATTTTGTTCACTGCGTAGGAT 57.294 34.783 5.26 0.00 0.00 3.24
713 717 4.085107 GCGCACCTTAAATTTTGTTCACTG 60.085 41.667 0.30 0.00 0.00 3.66
721 725 4.142381 GGAGAGATGCGCACCTTAAATTTT 60.142 41.667 14.90 0.00 0.00 1.82
755 759 3.131400 CGAACCCCCAAAAAGAAAACAGA 59.869 43.478 0.00 0.00 0.00 3.41
756 760 3.131400 TCGAACCCCCAAAAAGAAAACAG 59.869 43.478 0.00 0.00 0.00 3.16
758 762 3.804786 TCGAACCCCCAAAAAGAAAAC 57.195 42.857 0.00 0.00 0.00 2.43
759 763 3.770388 AGTTCGAACCCCCAAAAAGAAAA 59.230 39.130 24.22 0.00 0.00 2.29
760 764 3.367321 AGTTCGAACCCCCAAAAAGAAA 58.633 40.909 24.22 0.00 0.00 2.52
761 765 3.021177 AGTTCGAACCCCCAAAAAGAA 57.979 42.857 24.22 0.00 0.00 2.52
762 766 2.740506 AGTTCGAACCCCCAAAAAGA 57.259 45.000 24.22 0.00 0.00 2.52
763 767 2.956333 AGAAGTTCGAACCCCCAAAAAG 59.044 45.455 24.22 0.00 0.00 2.27
764 768 3.021177 AGAAGTTCGAACCCCCAAAAA 57.979 42.857 24.22 0.00 0.00 1.94
765 769 2.740506 AGAAGTTCGAACCCCCAAAA 57.259 45.000 24.22 0.00 0.00 2.44
766 770 3.479489 GTTAGAAGTTCGAACCCCCAAA 58.521 45.455 24.22 10.12 0.00 3.28
767 771 2.224597 GGTTAGAAGTTCGAACCCCCAA 60.225 50.000 28.27 11.16 43.54 4.12
768 772 1.348696 GGTTAGAAGTTCGAACCCCCA 59.651 52.381 28.27 5.47 43.54 4.96
769 773 2.105006 GGTTAGAAGTTCGAACCCCC 57.895 55.000 28.27 13.42 43.54 5.40
773 777 6.700520 CCATATACTGGGTTAGAAGTTCGAAC 59.299 42.308 20.71 20.71 41.82 3.95
774 778 6.684613 GCCATATACTGGGTTAGAAGTTCGAA 60.685 42.308 0.00 0.00 46.06 3.71
776 780 4.989168 GCCATATACTGGGTTAGAAGTTCG 59.011 45.833 0.00 0.00 46.06 3.95
777 781 5.306394 GGCCATATACTGGGTTAGAAGTTC 58.694 45.833 0.00 0.00 46.06 3.01
778 782 4.104261 GGGCCATATACTGGGTTAGAAGTT 59.896 45.833 4.39 0.00 46.06 2.66
779 783 3.651423 GGGCCATATACTGGGTTAGAAGT 59.349 47.826 4.39 0.00 46.06 3.01
781 785 3.650942 CTGGGCCATATACTGGGTTAGAA 59.349 47.826 6.72 0.00 46.06 2.10
782 786 3.248024 CTGGGCCATATACTGGGTTAGA 58.752 50.000 6.72 0.00 46.06 2.10
783 787 2.979678 ACTGGGCCATATACTGGGTTAG 59.020 50.000 6.72 0.00 46.06 2.34
784 788 2.708861 CACTGGGCCATATACTGGGTTA 59.291 50.000 6.72 0.00 46.06 2.85
786 790 1.140312 CACTGGGCCATATACTGGGT 58.860 55.000 6.72 0.00 46.06 4.51
787 791 0.401738 CCACTGGGCCATATACTGGG 59.598 60.000 6.72 0.00 46.06 4.45
885 2261 3.066190 CCGTGCCGTGTCTAGGGA 61.066 66.667 0.00 0.00 33.64 4.20
1148 2582 2.655090 TCACCAGAGCAATTGAACCA 57.345 45.000 10.34 0.00 0.00 3.67
1173 2631 5.699915 CAGAGCAATCAGATAACCCACATAG 59.300 44.000 0.00 0.00 0.00 2.23
1328 4229 3.731867 GCACCCAAATTATTCACGAGCAG 60.732 47.826 0.00 0.00 0.00 4.24
1646 4730 1.373435 CTCCTGCGTTGGGTTGGTA 59.627 57.895 0.00 0.00 0.00 3.25
1673 4757 4.805719 CGCTATGTTTCTATGAGCAGAACA 59.194 41.667 0.00 0.00 34.31 3.18
1680 4764 5.352284 ACAAGTCCGCTATGTTTCTATGAG 58.648 41.667 0.00 0.00 0.00 2.90
1935 5052 4.935352 AGGCTGCTCAGTCTATCTAAAG 57.065 45.455 1.61 0.00 42.43 1.85
2344 5465 3.073356 TCTTGAAACCTTGGAATACCCGT 59.927 43.478 0.00 0.00 37.93 5.28
2548 5675 1.224120 TCCTCCAGATTAGGGGCATCT 59.776 52.381 0.00 0.00 34.66 2.90
2621 5748 1.243342 TGGCTTTCCTTGTCATGCGG 61.243 55.000 0.00 0.00 0.00 5.69
2997 6135 3.016031 TCAACGAACATGGATTGGATGG 58.984 45.455 0.00 0.00 0.00 3.51
3347 6544 1.393603 CATAGGAGACACTCTCGGCA 58.606 55.000 0.00 0.00 44.28 5.69
3348 6545 0.671251 CCATAGGAGACACTCTCGGC 59.329 60.000 0.00 0.00 44.28 5.54
3349 6546 0.671251 GCCATAGGAGACACTCTCGG 59.329 60.000 0.00 0.00 44.28 4.63
3350 6547 1.393603 TGCCATAGGAGACACTCTCG 58.606 55.000 0.00 0.00 44.28 4.04
3351 6548 2.763448 AGTTGCCATAGGAGACACTCTC 59.237 50.000 0.00 0.00 42.66 3.20
3352 6549 2.763448 GAGTTGCCATAGGAGACACTCT 59.237 50.000 0.00 0.00 0.00 3.24
3353 6550 2.159028 GGAGTTGCCATAGGAGACACTC 60.159 54.545 0.00 0.00 36.34 3.51
3354 6551 1.834263 GGAGTTGCCATAGGAGACACT 59.166 52.381 0.00 0.00 36.34 3.55
3356 6553 0.824109 CGGAGTTGCCATAGGAGACA 59.176 55.000 0.00 0.00 35.94 3.41
3359 6556 2.802787 CTACGGAGTTGCCATAGGAG 57.197 55.000 0.00 0.00 37.78 3.69
3361 6558 3.989104 CCTACGGAGTTGCCATAGG 57.011 57.895 0.00 0.00 45.43 2.57
3362 6559 2.798499 CGAACCTACGGAGTTGCCATAG 60.798 54.545 0.00 0.00 37.78 2.23
3364 6561 0.108329 CGAACCTACGGAGTTGCCAT 60.108 55.000 0.00 0.00 37.78 4.40
3365 6562 1.290955 CGAACCTACGGAGTTGCCA 59.709 57.895 0.00 0.00 37.78 4.92
3366 6563 0.320160 AACGAACCTACGGAGTTGCC 60.320 55.000 0.00 0.00 37.78 4.52
3367 6564 1.505425 AAACGAACCTACGGAGTTGC 58.495 50.000 0.00 0.00 37.78 4.17
3368 6565 2.349155 GCAAAACGAACCTACGGAGTTG 60.349 50.000 0.00 0.00 37.78 3.16
3369 6566 1.869132 GCAAAACGAACCTACGGAGTT 59.131 47.619 0.00 0.00 37.78 3.01
3371 6568 1.792006 AGCAAAACGAACCTACGGAG 58.208 50.000 0.00 0.00 37.61 4.63
3372 6569 2.137523 GAAGCAAAACGAACCTACGGA 58.862 47.619 0.00 0.00 37.61 4.69
3373 6570 1.196127 GGAAGCAAAACGAACCTACGG 59.804 52.381 0.00 0.00 37.61 4.02
3374 6571 1.196127 GGGAAGCAAAACGAACCTACG 59.804 52.381 0.00 0.00 39.31 3.51
3428 6644 6.866010 TGAATCTAATTCATGAATCCACCG 57.134 37.500 20.95 8.33 43.84 4.94
3474 6690 6.073980 CCGATAACCCACATAACTTAATCACG 60.074 42.308 0.00 0.00 0.00 4.35
3525 6741 9.131791 TCCTTTGAAAGTAAGAAAGCAATAGTT 57.868 29.630 4.02 0.00 0.00 2.24
3548 6764 0.700564 ATCAGGCATGTGGTGTTCCT 59.299 50.000 0.00 0.00 34.23 3.36
3584 6800 5.980116 GTGCTCTCAAATATCGTATCTGTGT 59.020 40.000 0.00 0.00 0.00 3.72
3598 6814 4.717877 TCATCCTTTGAAGTGCTCTCAAA 58.282 39.130 10.70 10.70 33.13 2.69
3606 6822 5.065731 GGTAAGCTCATCATCCTTTGAAGTG 59.934 44.000 0.00 0.00 38.03 3.16
3607 6823 5.189180 GGTAAGCTCATCATCCTTTGAAGT 58.811 41.667 0.00 0.00 38.03 3.01
3608 6824 4.578105 GGGTAAGCTCATCATCCTTTGAAG 59.422 45.833 0.00 0.00 38.03 3.02
3609 6825 4.018506 TGGGTAAGCTCATCATCCTTTGAA 60.019 41.667 0.00 0.00 38.03 2.69
3610 6826 3.523157 TGGGTAAGCTCATCATCCTTTGA 59.477 43.478 0.00 0.00 39.12 2.69
3611 6827 3.889815 TGGGTAAGCTCATCATCCTTTG 58.110 45.455 0.00 0.00 0.00 2.77
3612 6828 4.591321 TTGGGTAAGCTCATCATCCTTT 57.409 40.909 0.00 0.00 0.00 3.11
3613 6829 4.530875 CTTTGGGTAAGCTCATCATCCTT 58.469 43.478 0.00 0.00 0.00 3.36
3614 6830 3.117738 CCTTTGGGTAAGCTCATCATCCT 60.118 47.826 0.00 0.00 32.19 3.24
3615 6831 3.217626 CCTTTGGGTAAGCTCATCATCC 58.782 50.000 0.00 0.00 32.19 3.51
3616 6832 3.891049 ACCTTTGGGTAAGCTCATCATC 58.109 45.455 0.00 0.00 45.32 2.92
3617 6833 4.322057 AACCTTTGGGTAAGCTCATCAT 57.678 40.909 0.00 0.00 46.67 2.45
3618 6834 3.806949 AACCTTTGGGTAAGCTCATCA 57.193 42.857 0.00 0.00 46.67 3.07
3619 6835 3.367395 GCAAACCTTTGGGTAAGCTCATC 60.367 47.826 0.00 0.00 46.67 2.92
3620 6836 2.562738 GCAAACCTTTGGGTAAGCTCAT 59.437 45.455 0.00 0.00 46.67 2.90
3621 6837 1.960689 GCAAACCTTTGGGTAAGCTCA 59.039 47.619 0.00 0.00 46.67 4.26
3622 6838 1.960689 TGCAAACCTTTGGGTAAGCTC 59.039 47.619 11.15 0.00 46.67 4.09
3623 6839 2.080654 TGCAAACCTTTGGGTAAGCT 57.919 45.000 11.15 0.00 46.67 3.74
3624 6840 3.257127 TGTATGCAAACCTTTGGGTAAGC 59.743 43.478 0.00 0.00 46.67 3.09
3625 6841 5.410067 CATGTATGCAAACCTTTGGGTAAG 58.590 41.667 0.00 0.00 46.67 2.34
3626 6842 4.221703 CCATGTATGCAAACCTTTGGGTAA 59.778 41.667 0.00 0.00 46.67 2.85
3627 6843 3.766591 CCATGTATGCAAACCTTTGGGTA 59.233 43.478 0.00 0.00 46.67 3.69
3629 6845 2.677613 GCCATGTATGCAAACCTTTGGG 60.678 50.000 0.00 0.00 38.57 4.12
3630 6846 2.620242 GCCATGTATGCAAACCTTTGG 58.380 47.619 0.00 0.00 38.57 3.28
3631 6847 2.094803 TCGCCATGTATGCAAACCTTTG 60.095 45.455 0.00 0.00 41.03 2.77
3632 6848 2.166829 TCGCCATGTATGCAAACCTTT 58.833 42.857 0.00 0.00 0.00 3.11
3651 6867 3.308323 GCCATGAGTTCGATTGAGAGTTC 59.692 47.826 0.00 0.00 0.00 3.01
3661 6877 3.616821 CGAAGTTTATGCCATGAGTTCGA 59.383 43.478 19.54 0.00 43.78 3.71
3724 6940 3.885297 AGCAGACACACTAAACAAAGCAT 59.115 39.130 0.00 0.00 0.00 3.79
3734 6950 2.158827 TGCCAGAAAAGCAGACACACTA 60.159 45.455 0.00 0.00 34.69 2.74
3736 6952 1.024271 TGCCAGAAAAGCAGACACAC 58.976 50.000 0.00 0.00 34.69 3.82
3742 6958 1.321474 TCCAAGTGCCAGAAAAGCAG 58.679 50.000 0.00 0.00 41.87 4.24
3745 6961 1.891150 AGCATCCAAGTGCCAGAAAAG 59.109 47.619 0.00 0.00 46.19 2.27
3787 7003 2.200899 CAAGCGTCAAACCCAAAAAGG 58.799 47.619 0.00 0.00 37.03 3.11
3789 7005 1.205893 AGCAAGCGTCAAACCCAAAAA 59.794 42.857 0.00 0.00 0.00 1.94
3795 7011 0.517316 CCAGTAGCAAGCGTCAAACC 59.483 55.000 0.00 0.00 0.00 3.27
3796 7012 0.517316 CCCAGTAGCAAGCGTCAAAC 59.483 55.000 0.00 0.00 0.00 2.93
3802 7018 1.227380 CTAGCCCCAGTAGCAAGCG 60.227 63.158 0.00 0.00 0.00 4.68
3817 7033 5.406780 AGATGCTTTTCGACAACAACTCTAG 59.593 40.000 0.00 0.00 0.00 2.43
3826 7042 3.210227 TGTTGGAGATGCTTTTCGACAA 58.790 40.909 0.00 0.00 0.00 3.18
3827 7043 2.807967 CTGTTGGAGATGCTTTTCGACA 59.192 45.455 0.00 0.00 0.00 4.35
3828 7044 2.413371 GCTGTTGGAGATGCTTTTCGAC 60.413 50.000 0.00 0.00 0.00 4.20
3829 7045 1.806542 GCTGTTGGAGATGCTTTTCGA 59.193 47.619 0.00 0.00 0.00 3.71
3830 7046 1.135575 GGCTGTTGGAGATGCTTTTCG 60.136 52.381 0.00 0.00 0.00 3.46
3831 7047 1.135575 CGGCTGTTGGAGATGCTTTTC 60.136 52.381 0.00 0.00 0.00 2.29
3832 7048 0.883833 CGGCTGTTGGAGATGCTTTT 59.116 50.000 0.00 0.00 0.00 2.27
3833 7049 0.250901 ACGGCTGTTGGAGATGCTTT 60.251 50.000 0.00 0.00 0.00 3.51
3834 7050 0.957395 CACGGCTGTTGGAGATGCTT 60.957 55.000 0.00 0.00 0.00 3.91
3867 7083 2.888834 AAAACATGCTTTTCCTGCGT 57.111 40.000 0.00 0.00 0.00 5.24
3871 7087 3.190535 ACGCGATAAAACATGCTTTTCCT 59.809 39.130 15.93 0.00 0.00 3.36
4087 7372 4.564116 CGGCGGCGTCGGTAGAAT 62.564 66.667 28.09 0.00 36.79 2.40
4154 7456 3.075005 ACGGATGCCACGGTAGCT 61.075 61.111 0.00 0.00 35.23 3.32
4166 7468 0.036010 CTGAAAGGGCAGACACGGAT 60.036 55.000 0.00 0.00 38.14 4.18
4171 7473 0.111061 ACATGCTGAAAGGGCAGACA 59.889 50.000 0.00 0.00 43.15 3.41
4175 7477 2.436417 GTAGAACATGCTGAAAGGGCA 58.564 47.619 0.00 0.00 44.05 5.36
4182 7485 0.179137 CTCCGCGTAGAACATGCTGA 60.179 55.000 4.92 0.00 36.99 4.26
4312 7615 0.806884 TCCACGCGTCGTCAAAGTTT 60.807 50.000 9.86 0.00 38.32 2.66
4473 7778 3.758088 CTCGATGGCGACGTCCTGG 62.758 68.421 10.58 0.00 43.77 4.45
4575 7881 0.895100 ACGCATGTCCCAGTTTGCAT 60.895 50.000 0.00 0.00 34.80 3.96
4668 7979 9.624373 AAATATACTAGAAACTACTCCTCGTCA 57.376 33.333 0.00 0.00 0.00 4.35
4720 8034 2.355756 CCATTGTATTCCAGTGGCGAAG 59.644 50.000 3.51 0.00 43.14 3.79
4721 8035 2.364632 CCATTGTATTCCAGTGGCGAA 58.635 47.619 3.51 0.00 43.14 4.70
4722 8036 2.036958 CCATTGTATTCCAGTGGCGA 57.963 50.000 3.51 0.00 43.14 5.54
4726 8040 3.861840 AGTCGACCATTGTATTCCAGTG 58.138 45.455 13.01 0.00 0.00 3.66
4727 8041 5.187186 ACTTAGTCGACCATTGTATTCCAGT 59.813 40.000 13.01 0.00 0.00 4.00
4728 8042 5.661458 ACTTAGTCGACCATTGTATTCCAG 58.339 41.667 13.01 0.00 0.00 3.86
4729 8043 5.670792 ACTTAGTCGACCATTGTATTCCA 57.329 39.130 13.01 0.00 0.00 3.53
4730 8044 6.980051 AAACTTAGTCGACCATTGTATTCC 57.020 37.500 13.01 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.