Multiple sequence alignment - TraesCS3D01G522100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G522100 chr3D 100.000 4536 0 0 566 5101 603425579 603430114 0.000000e+00 8377.0
1 TraesCS3D01G522100 chr3D 85.629 2853 335 43 1777 4579 587380905 587378078 0.000000e+00 2928.0
2 TraesCS3D01G522100 chr3D 78.978 1018 136 36 797 1771 587381933 587380951 1.560000e-174 623.0
3 TraesCS3D01G522100 chr3D 100.000 337 0 0 1 337 603425014 603425350 1.560000e-174 623.0
4 TraesCS3D01G522100 chr3D 74.710 1380 281 53 2826 4164 586002637 586003989 2.080000e-153 553.0
5 TraesCS3D01G522100 chr3D 89.198 324 27 6 5 324 587382510 587382191 1.030000e-106 398.0
6 TraesCS3D01G522100 chr3A 95.993 3219 99 14 1810 5022 732641243 732638049 0.000000e+00 5203.0
7 TraesCS3D01G522100 chr3A 96.187 1259 44 3 566 1822 732644040 732642784 0.000000e+00 2056.0
8 TraesCS3D01G522100 chr3A 94.955 337 14 3 1 336 732644389 732644055 4.520000e-145 525.0
9 TraesCS3D01G522100 chr3B 84.476 2873 360 46 1777 4579 784433734 784430878 0.000000e+00 2756.0
10 TraesCS3D01G522100 chr3B 81.699 612 79 18 797 1385 784435174 784434573 3.570000e-131 479.0
11 TraesCS3D01G522100 chr3B 86.053 337 39 6 5 337 784435834 784435502 6.280000e-94 355.0
12 TraesCS3D01G522100 chr3B 89.100 211 20 3 574 782 784435475 784435266 5.070000e-65 259.0
13 TraesCS3D01G522100 chr6B 77.027 444 90 12 3719 4158 664822281 664821846 1.420000e-60 244.0
14 TraesCS3D01G522100 chr6A 89.796 49 3 2 2321 2369 187913932 187913978 1.530000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G522100 chr3D 603425014 603430114 5100 False 4500.000000 8377 100.000000 1 5101 2 chr3D.!!$F2 5100
1 TraesCS3D01G522100 chr3D 587378078 587382510 4432 True 1316.333333 2928 84.601667 5 4579 3 chr3D.!!$R1 4574
2 TraesCS3D01G522100 chr3D 586002637 586003989 1352 False 553.000000 553 74.710000 2826 4164 1 chr3D.!!$F1 1338
3 TraesCS3D01G522100 chr3A 732638049 732644389 6340 True 2594.666667 5203 95.711667 1 5022 3 chr3A.!!$R1 5021
4 TraesCS3D01G522100 chr3B 784430878 784435834 4956 True 962.250000 2756 85.332000 5 4579 4 chr3B.!!$R1 4574

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
585 589 1.398390 GCATCGGTTTTCAGTGGCTAG 59.602 52.381 0.0 0.0 0.00 3.42 F
1473 1582 2.455674 ATACACACACACACGAGCAT 57.544 45.000 0.0 0.0 0.00 3.79 F
1981 4113 0.606096 GCTTTAATTGTGGCCCCGTT 59.394 50.000 0.0 0.0 0.00 4.44 F
2506 4690 0.808125 CCGAAAAACGATGGATGGCA 59.192 50.000 0.0 0.0 45.77 4.92 F
3339 5551 4.154195 CACACAACAAATGTAGGTAGCTCC 59.846 45.833 0.0 0.0 41.46 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1749 2288 0.038166 GGGAATGACTGGTTGGCTCA 59.962 55.000 0.00 0.00 0.00 4.26 R
2326 4507 2.293399 GGTGGAAAATGAGTCACACCAC 59.707 50.000 19.76 20.62 45.72 4.16 R
3843 6062 1.045911 GGGCCCTGAACAAAACCACA 61.046 55.000 17.04 0.00 0.00 4.17 R
3955 6174 4.201940 TGACAAGCTTGTTGTTGATGTCAG 60.202 41.667 31.58 1.22 42.43 3.51 R
4684 6904 2.416680 TCGGGAAATGCATGTGATGA 57.583 45.000 0.00 0.00 0.00 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
93 96 5.293319 TGGGGCATTAATTCAATGAATGG 57.707 39.130 9.47 1.63 45.99 3.16
181 184 5.130145 TGACCATTCAAGGTTTCCAAAATGT 59.870 36.000 0.00 0.00 43.38 2.71
240 243 8.239038 TCTCATATCTTGTTCTAGTAACCAGG 57.761 38.462 0.00 0.00 0.00 4.45
270 273 6.471146 AGATATAGCTACAATGCAAAGGGAG 58.529 40.000 0.00 0.00 34.99 4.30
585 589 1.398390 GCATCGGTTTTCAGTGGCTAG 59.602 52.381 0.00 0.00 0.00 3.42
729 733 9.017509 ACATTCATCAAGACATGAGTTACAAAT 57.982 29.630 0.00 0.00 42.53 2.32
948 1031 9.071276 CCATTAGAAATGGATTAAGCTACACAT 57.929 33.333 12.41 0.00 41.64 3.21
1048 1154 8.393959 TGAAGAAAGTATAAAATCTCCCTCCT 57.606 34.615 0.00 0.00 0.00 3.69
1085 1191 3.170791 AGCACATCTGTCTATTGTCGG 57.829 47.619 0.00 0.00 0.00 4.79
1090 1196 2.492019 TCTGTCTATTGTCGGATGCG 57.508 50.000 0.00 0.00 0.00 4.73
1246 1352 9.088987 TGATCTAGTTATCATAGTAATGGCACA 57.911 33.333 0.00 0.00 34.86 4.57
1312 1419 7.596749 AGTTGAATACAGTCGTGGAAAATAG 57.403 36.000 0.00 0.00 0.00 1.73
1317 1424 3.074412 ACAGTCGTGGAAAATAGCCAAG 58.926 45.455 0.00 0.00 37.12 3.61
1473 1582 2.455674 ATACACACACACACGAGCAT 57.544 45.000 0.00 0.00 0.00 3.79
1621 2160 2.706339 CCTATCATAGCCCAGGCATC 57.294 55.000 12.03 0.00 44.88 3.91
1665 2204 4.335594 CCTAAATCCCTTCCAATCGACAAC 59.664 45.833 0.00 0.00 0.00 3.32
1749 2288 1.276622 CTACCCACTACCCTTGCAGT 58.723 55.000 0.00 0.00 0.00 4.40
1775 2354 0.698818 ACCAGTCATTCCCCTTCACC 59.301 55.000 0.00 0.00 0.00 4.02
1814 2393 1.105759 ACATCCCGTACTAGCCGACC 61.106 60.000 4.12 0.00 0.00 4.79
1819 2398 0.816825 CCGTACTAGCCGACCTGCTA 60.817 60.000 4.12 0.00 42.75 3.49
1847 3976 5.658190 AGTTAATGCTATGGTGGCAATTTCT 59.342 36.000 0.00 0.00 43.14 2.52
1981 4113 0.606096 GCTTTAATTGTGGCCCCGTT 59.394 50.000 0.00 0.00 0.00 4.44
2399 4580 8.242085 TGCAAATTAGCAATTAAGTTCATGTG 57.758 30.769 0.00 0.00 42.46 3.21
2506 4690 0.808125 CCGAAAAACGATGGATGGCA 59.192 50.000 0.00 0.00 45.77 4.92
2546 4730 4.237724 GACCGCAGATATGATGAATCGAA 58.762 43.478 0.00 0.00 0.00 3.71
2696 4881 8.511321 TGACACCATTAAGTTATTGTCATTGTC 58.489 33.333 10.70 11.98 38.68 3.18
2716 4901 7.837202 TTGTCGTTATAAGGTATTGGACTTG 57.163 36.000 5.16 0.00 0.00 3.16
2831 5016 7.489160 ACGAGCTACAATAAATGTGTATGAGA 58.511 34.615 0.00 0.00 43.77 3.27
3233 5444 9.574516 AGACATTTACATTTTCAAGGTACTCTT 57.425 29.630 0.00 0.00 38.49 2.85
3339 5551 4.154195 CACACAACAAATGTAGGTAGCTCC 59.846 45.833 0.00 0.00 41.46 4.70
3422 5636 5.973651 ACGCACATACTATCATTTGACAG 57.026 39.130 0.00 0.00 0.00 3.51
3424 5638 5.750547 ACGCACATACTATCATTTGACAGAG 59.249 40.000 0.00 0.00 0.00 3.35
3590 5805 7.865706 ACATCACTTAGTATGGGAAAATGTC 57.134 36.000 0.00 0.00 0.00 3.06
3592 5807 7.336931 ACATCACTTAGTATGGGAAAATGTCAC 59.663 37.037 0.00 0.00 0.00 3.67
3843 6062 9.981460 AAGATAAAGGAATTTTCTCATACTGGT 57.019 29.630 0.00 0.00 30.18 4.00
3890 6109 4.626287 GCTTCATCAGACTCCCCACAAATA 60.626 45.833 0.00 0.00 0.00 1.40
3955 6174 6.474751 GCTTTTATGAGAAACATCCAGATTGC 59.525 38.462 0.00 0.00 40.07 3.56
4021 6240 8.606830 AGACCTTCTTGGAACTAGTGATAAAAT 58.393 33.333 0.00 0.00 39.71 1.82
4164 6383 8.420374 TTCTCGAGTTGGACATTTACATAATC 57.580 34.615 13.13 0.00 0.00 1.75
4503 6723 8.459911 TTGTTCTTCGAGGATGACATATACTA 57.540 34.615 0.00 0.00 0.00 1.82
4595 6815 1.879380 TCCTTTGACAGCCATCAAACG 59.121 47.619 8.52 6.08 42.32 3.60
4646 6866 1.168714 GAGCCTAGCCCACAAAACAG 58.831 55.000 0.00 0.00 0.00 3.16
4659 6879 2.699846 ACAAAACAGGCCATTGTGACAT 59.300 40.909 15.12 0.00 36.03 3.06
4664 6884 4.724074 ACAGGCCATTGTGACATATTTG 57.276 40.909 5.01 0.00 0.00 2.32
4701 6921 4.931661 AGAATCATCACATGCATTTCCC 57.068 40.909 0.00 0.00 0.00 3.97
4712 6932 2.297701 TGCATTTCCCGAATTAGGAGC 58.702 47.619 6.11 3.40 34.08 4.70
4714 6934 2.687935 GCATTTCCCGAATTAGGAGCAA 59.312 45.455 6.11 0.00 34.08 3.91
4715 6935 3.130340 GCATTTCCCGAATTAGGAGCAAA 59.870 43.478 6.11 2.98 34.08 3.68
4716 6936 4.381505 GCATTTCCCGAATTAGGAGCAAAA 60.382 41.667 6.11 2.26 34.08 2.44
4756 6976 1.606601 GAAGCCCAAACACCCTCCC 60.607 63.158 0.00 0.00 0.00 4.30
4757 6977 3.160478 AAGCCCAAACACCCTCCCC 62.160 63.158 0.00 0.00 0.00 4.81
4758 6978 4.696805 GCCCAAACACCCTCCCCC 62.697 72.222 0.00 0.00 0.00 5.40
4776 6996 2.668144 CCCCCAAAGGTCAACAGTAA 57.332 50.000 0.00 0.00 0.00 2.24
4782 7002 5.105106 CCCCAAAGGTCAACAGTAAAACTTT 60.105 40.000 0.00 0.00 0.00 2.66
4933 7153 9.741647 CCCAAAATCTAGATTGAATTTAAGAGC 57.258 33.333 18.61 0.00 0.00 4.09
5022 7242 7.571080 AAATGGCATGAACTTTTTGAACATT 57.429 28.000 0.00 0.00 0.00 2.71
5023 7243 8.674263 AAATGGCATGAACTTTTTGAACATTA 57.326 26.923 0.00 0.00 0.00 1.90
5024 7244 8.674263 AATGGCATGAACTTTTTGAACATTAA 57.326 26.923 0.00 0.00 0.00 1.40
5025 7245 8.851541 ATGGCATGAACTTTTTGAACATTAAT 57.148 26.923 0.00 0.00 0.00 1.40
5026 7246 8.674263 TGGCATGAACTTTTTGAACATTAATT 57.326 26.923 0.00 0.00 0.00 1.40
5027 7247 9.118300 TGGCATGAACTTTTTGAACATTAATTT 57.882 25.926 0.00 0.00 0.00 1.82
5028 7248 9.949174 GGCATGAACTTTTTGAACATTAATTTT 57.051 25.926 0.00 0.00 0.00 1.82
5072 7292 6.790285 TTTTTCGTAACATGTTACTCCCTC 57.210 37.500 34.33 16.26 42.31 4.30
5073 7293 5.733620 TTTCGTAACATGTTACTCCCTCT 57.266 39.130 34.33 6.65 42.31 3.69
5074 7294 6.839124 TTTCGTAACATGTTACTCCCTCTA 57.161 37.500 34.33 16.83 42.31 2.43
5075 7295 7.414222 TTTCGTAACATGTTACTCCCTCTAT 57.586 36.000 34.33 5.47 42.31 1.98
5076 7296 6.630444 TCGTAACATGTTACTCCCTCTATC 57.370 41.667 34.33 13.88 42.31 2.08
5077 7297 5.533903 TCGTAACATGTTACTCCCTCTATCC 59.466 44.000 34.33 13.47 42.31 2.59
5078 7298 5.301045 CGTAACATGTTACTCCCTCTATCCA 59.699 44.000 34.33 5.63 42.31 3.41
5079 7299 6.015350 CGTAACATGTTACTCCCTCTATCCAT 60.015 42.308 34.33 3.92 42.31 3.41
5080 7300 6.426646 AACATGTTACTCCCTCTATCCATC 57.573 41.667 9.97 0.00 0.00 3.51
5081 7301 5.721225 ACATGTTACTCCCTCTATCCATCT 58.279 41.667 0.00 0.00 0.00 2.90
5082 7302 6.146760 ACATGTTACTCCCTCTATCCATCTT 58.853 40.000 0.00 0.00 0.00 2.40
5083 7303 6.617371 ACATGTTACTCCCTCTATCCATCTTT 59.383 38.462 0.00 0.00 0.00 2.52
5084 7304 7.789831 ACATGTTACTCCCTCTATCCATCTTTA 59.210 37.037 0.00 0.00 0.00 1.85
5085 7305 8.651389 CATGTTACTCCCTCTATCCATCTTTAA 58.349 37.037 0.00 0.00 0.00 1.52
5086 7306 8.798975 TGTTACTCCCTCTATCCATCTTTAAT 57.201 34.615 0.00 0.00 0.00 1.40
5087 7307 8.651389 TGTTACTCCCTCTATCCATCTTTAATG 58.349 37.037 0.00 0.00 0.00 1.90
5088 7308 6.694445 ACTCCCTCTATCCATCTTTAATGG 57.306 41.667 0.00 0.00 40.48 3.16
5089 7309 5.549619 ACTCCCTCTATCCATCTTTAATGGG 59.450 44.000 4.32 0.00 39.60 4.00
5090 7310 4.289672 TCCCTCTATCCATCTTTAATGGGC 59.710 45.833 4.32 0.00 39.60 5.36
5091 7311 4.568592 CCCTCTATCCATCTTTAATGGGCC 60.569 50.000 0.00 0.00 39.60 5.80
5092 7312 4.290722 CCTCTATCCATCTTTAATGGGCCT 59.709 45.833 4.53 0.00 39.60 5.19
5093 7313 5.488919 CCTCTATCCATCTTTAATGGGCCTA 59.511 44.000 4.53 0.00 39.60 3.93
5094 7314 6.012508 CCTCTATCCATCTTTAATGGGCCTAA 60.013 42.308 4.53 0.00 39.60 2.69
5095 7315 7.312183 CCTCTATCCATCTTTAATGGGCCTAAT 60.312 40.741 4.53 0.00 39.60 1.73
5096 7316 7.405292 TCTATCCATCTTTAATGGGCCTAATG 58.595 38.462 4.53 0.00 39.60 1.90
5097 7317 4.151883 TCCATCTTTAATGGGCCTAATGC 58.848 43.478 4.53 0.00 39.60 3.56
5098 7318 3.896888 CCATCTTTAATGGGCCTAATGCA 59.103 43.478 4.53 0.00 43.89 3.96
5099 7319 4.529377 CCATCTTTAATGGGCCTAATGCAT 59.471 41.667 4.53 0.00 43.89 3.96
5100 7320 5.012354 CCATCTTTAATGGGCCTAATGCATT 59.988 40.000 17.56 17.56 43.89 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 9.383519 GTCAAAGGATCAAGTTATGTATCTCAA 57.616 33.333 0.00 0.00 0.00 3.02
62 63 7.911130 TTGAATTAATGCCCCAAAGATCATA 57.089 32.000 0.00 0.00 0.00 2.15
93 96 7.432869 TGGCATATCAATAGTTTAATGGTTGC 58.567 34.615 0.00 0.00 0.00 4.17
150 153 5.405269 GGAAACCTTGAATGGTCAATTTTCG 59.595 40.000 12.72 0.00 42.85 3.46
240 243 8.792830 TTTGCATTGTAGCTATATCTATTCCC 57.207 34.615 0.00 0.00 34.99 3.97
270 273 2.489722 GGCAAGGATCTCTTTGTTGGTC 59.510 50.000 4.29 0.00 35.64 4.02
585 589 7.076842 TCTAGTTTTATGTTCATCTGCTTGC 57.923 36.000 0.00 0.00 0.00 4.01
724 728 8.134895 CGTCCATTTTAGCCACATAATATTTGT 58.865 33.333 0.00 0.00 0.00 2.83
729 733 5.464057 CGACGTCCATTTTAGCCACATAATA 59.536 40.000 10.58 0.00 0.00 0.98
1048 1154 5.330455 TGTGCTTGTAAAACACCATTTGA 57.670 34.783 0.00 0.00 33.30 2.69
1085 1191 1.376609 AACCATCCCTTTCGCGCATC 61.377 55.000 8.75 0.00 0.00 3.91
1090 1196 1.474330 ATTGGAACCATCCCTTTCGC 58.526 50.000 0.00 0.00 45.95 4.70
1246 1352 5.867174 GGCAAACAACAACTTCTTGTTAGTT 59.133 36.000 0.00 4.23 46.88 2.24
1378 1485 5.197451 TCACCTTACAACCTTCATTGTGTT 58.803 37.500 1.46 0.00 42.74 3.32
1505 2044 4.299796 GGGTGCATGGGGTGTGGT 62.300 66.667 0.00 0.00 0.00 4.16
1526 2065 2.435693 CCAACTCCTCGGGCCTAGG 61.436 68.421 17.88 17.88 35.26 3.02
1621 2160 3.804873 GGTAGCTAGCTTTGATTCTTCGG 59.195 47.826 24.88 0.00 0.00 4.30
1665 2204 1.339151 GGGAGCTAGTTTGGGACACAG 60.339 57.143 0.00 0.00 39.29 3.66
1749 2288 0.038166 GGGAATGACTGGTTGGCTCA 59.962 55.000 0.00 0.00 0.00 4.26
1775 2354 2.180131 GACACTGGAGCAGCTTTGCG 62.180 60.000 0.00 0.00 40.27 4.85
1814 2393 5.008019 CACCATAGCATTAACTTGGTAGCAG 59.992 44.000 0.00 0.00 38.61 4.24
1819 2398 3.023832 GCCACCATAGCATTAACTTGGT 58.976 45.455 0.00 0.00 41.27 3.67
1877 4008 5.862845 ACCATAAAAATTCCACATGCACAA 58.137 33.333 0.00 0.00 0.00 3.33
2213 4364 4.221924 AGAGAGGAAGAAGTAGCTGAAACC 59.778 45.833 0.00 0.00 0.00 3.27
2214 4365 5.185056 AGAGAGAGGAAGAAGTAGCTGAAAC 59.815 44.000 0.00 0.00 0.00 2.78
2326 4507 2.293399 GGTGGAAAATGAGTCACACCAC 59.707 50.000 19.76 20.62 45.72 4.16
2329 4510 3.569701 ACATGGTGGAAAATGAGTCACAC 59.430 43.478 0.00 0.00 32.29 3.82
2399 4580 5.980715 TCTTTATTGTTTTTCGGCAAGTTCC 59.019 36.000 0.00 0.00 0.00 3.62
2481 4665 2.419667 TCCATCGTTTTTCGGAGGTTC 58.580 47.619 0.00 0.00 40.32 3.62
2506 4690 3.767131 CGGTCCCCAAAATGGTTTAGAAT 59.233 43.478 0.00 0.00 35.17 2.40
2546 4730 7.962964 TTGACACGAATTAGAGAAACTCAAT 57.037 32.000 0.00 0.00 32.06 2.57
2696 4881 8.192774 TCAGTACAAGTCCAATACCTTATAACG 58.807 37.037 0.00 0.00 0.00 3.18
2703 4888 5.338381 CCACATCAGTACAAGTCCAATACCT 60.338 44.000 0.00 0.00 0.00 3.08
2831 5016 5.474876 CCTTGCTATCTTTCTTCACCTTTGT 59.525 40.000 0.00 0.00 0.00 2.83
3233 5444 9.558396 AGAAAACCATAAATTGCATTGAGAAAA 57.442 25.926 0.00 0.00 0.00 2.29
3424 5638 8.598075 GCCATGTTCTTGATAATTTGTCAAATC 58.402 33.333 11.19 1.23 35.36 2.17
3590 5805 8.412456 AGATATATAGGATGCATTCTTCTCGTG 58.588 37.037 14.09 0.00 0.00 4.35
3592 5807 9.462174 GAAGATATATAGGATGCATTCTTCTCG 57.538 37.037 14.09 0.00 36.52 4.04
3843 6062 1.045911 GGGCCCTGAACAAAACCACA 61.046 55.000 17.04 0.00 0.00 4.17
3955 6174 4.201940 TGACAAGCTTGTTGTTGATGTCAG 60.202 41.667 31.58 1.22 42.43 3.51
4164 6383 6.151648 ACTTGAATGTATGTGAACTCCCAATG 59.848 38.462 0.00 0.00 0.00 2.82
4248 6467 8.519526 GTGTCCCTCAAATTTTGTATTCATGTA 58.480 33.333 8.89 0.00 0.00 2.29
4437 6657 6.021626 CGCTCTGTTACAGTACGAATAGAAAC 60.022 42.308 19.14 0.00 34.68 2.78
4546 6766 7.834068 TCAAATTTGAACCGTTTCATTTTCA 57.166 28.000 18.45 0.00 41.50 2.69
4547 6767 9.715123 ATTTCAAATTTGAACCGTTTCATTTTC 57.285 25.926 28.78 0.00 45.99 2.29
4595 6815 4.448732 GCCAATGGAAGAACATGTTGAAAC 59.551 41.667 17.58 0.81 0.00 2.78
4684 6904 2.416680 TCGGGAAATGCATGTGATGA 57.583 45.000 0.00 0.00 0.00 2.92
4757 6977 2.668144 TTACTGTTGACCTTTGGGGG 57.332 50.000 0.00 0.00 40.03 5.40
4758 6978 3.958147 AGTTTTACTGTTGACCTTTGGGG 59.042 43.478 0.00 0.00 41.89 4.96
4776 6996 9.710900 AATTTCAAGAAGTTTGACAGAAAGTTT 57.289 25.926 0.00 0.00 0.00 2.66
4866 7086 2.823747 GGTTGGGTGGACAAATAGTTCC 59.176 50.000 0.00 0.00 31.17 3.62
5055 7275 6.726490 TGGATAGAGGGAGTAACATGTTAC 57.274 41.667 32.39 32.39 44.22 2.50
5056 7276 7.306013 AGATGGATAGAGGGAGTAACATGTTA 58.694 38.462 14.35 14.35 0.00 2.41
5057 7277 6.146760 AGATGGATAGAGGGAGTAACATGTT 58.853 40.000 16.68 16.68 0.00 2.71
5058 7278 5.721225 AGATGGATAGAGGGAGTAACATGT 58.279 41.667 0.00 0.00 0.00 3.21
5059 7279 6.678568 AAGATGGATAGAGGGAGTAACATG 57.321 41.667 0.00 0.00 0.00 3.21
5060 7280 8.798975 TTAAAGATGGATAGAGGGAGTAACAT 57.201 34.615 0.00 0.00 0.00 2.71
5061 7281 8.651389 CATTAAAGATGGATAGAGGGAGTAACA 58.349 37.037 0.00 0.00 0.00 2.41
5062 7282 8.097662 CCATTAAAGATGGATAGAGGGAGTAAC 58.902 40.741 0.00 0.00 41.64 2.50
5063 7283 7.237679 CCCATTAAAGATGGATAGAGGGAGTAA 59.762 40.741 6.62 0.00 41.64 2.24
5064 7284 6.730977 CCCATTAAAGATGGATAGAGGGAGTA 59.269 42.308 6.62 0.00 41.64 2.59
5065 7285 5.549619 CCCATTAAAGATGGATAGAGGGAGT 59.450 44.000 6.62 0.00 41.64 3.85
5066 7286 5.572475 GCCCATTAAAGATGGATAGAGGGAG 60.572 48.000 6.62 0.00 41.64 4.30
5067 7287 4.289672 GCCCATTAAAGATGGATAGAGGGA 59.710 45.833 6.62 0.00 41.64 4.20
5068 7288 4.568592 GGCCCATTAAAGATGGATAGAGGG 60.569 50.000 6.62 0.00 41.64 4.30
5069 7289 4.290722 AGGCCCATTAAAGATGGATAGAGG 59.709 45.833 0.00 0.00 41.64 3.69
5070 7290 5.511386 AGGCCCATTAAAGATGGATAGAG 57.489 43.478 0.00 0.00 41.64 2.43
5071 7291 7.405292 CATTAGGCCCATTAAAGATGGATAGA 58.595 38.462 0.00 0.00 41.64 1.98
5072 7292 6.096001 GCATTAGGCCCATTAAAGATGGATAG 59.904 42.308 0.00 0.00 41.64 2.08
5073 7293 5.951747 GCATTAGGCCCATTAAAGATGGATA 59.048 40.000 0.00 0.00 41.64 2.59
5074 7294 4.774200 GCATTAGGCCCATTAAAGATGGAT 59.226 41.667 0.00 0.00 41.64 3.41
5075 7295 4.151883 GCATTAGGCCCATTAAAGATGGA 58.848 43.478 0.00 0.00 41.64 3.41
5076 7296 3.896888 TGCATTAGGCCCATTAAAGATGG 59.103 43.478 0.00 0.00 43.89 3.51
5077 7297 5.733620 ATGCATTAGGCCCATTAAAGATG 57.266 39.130 0.00 0.00 43.89 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.