Multiple sequence alignment - TraesCS3D01G521100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G521100 chr3D 100.000 3851 0 0 1 3851 603112003 603115853 0.000000e+00 7112.0
1 TraesCS3D01G521100 chr3D 97.556 1432 30 3 2423 3851 603149997 603151426 0.000000e+00 2446.0
2 TraesCS3D01G521100 chr3D 96.130 491 18 1 1669 2159 603140039 603140528 0.000000e+00 800.0
3 TraesCS3D01G521100 chr3D 95.956 272 7 2 2158 2429 603140689 603140956 4.570000e-119 438.0
4 TraesCS3D01G521100 chr3A 92.409 2569 164 18 731 3282 732915560 732913006 0.000000e+00 3635.0
5 TraesCS3D01G521100 chr3A 94.328 476 20 3 3382 3851 732913007 732912533 0.000000e+00 723.0
6 TraesCS3D01G521100 chr3A 90.102 394 37 1 1 394 732916439 732916048 9.540000e-141 510.0
7 TraesCS3D01G521100 chr3A 95.098 204 7 2 406 608 732915759 732915558 6.210000e-83 318.0
8 TraesCS3D01G521100 chr3A 100.000 31 0 0 1671 1701 579001691 579001661 1.490000e-04 58.4
9 TraesCS3D01G521100 chr3A 100.000 31 0 0 1671 1701 579002070 579002040 1.490000e-04 58.4
10 TraesCS3D01G521100 chr3B 92.171 2312 138 18 982 3282 810625253 810622974 0.000000e+00 3227.0
11 TraesCS3D01G521100 chr3B 93.487 476 24 3 3382 3851 810622975 810622501 0.000000e+00 701.0
12 TraesCS3D01G521100 chr3B 98.565 209 3 0 726 934 810625460 810625252 1.690000e-98 370.0
13 TraesCS3D01G521100 chr3B 93.220 59 2 2 631 688 810626837 810626780 6.850000e-13 86.1
14 TraesCS3D01G521100 chr6D 82.034 295 48 4 14 307 262746523 262746233 2.970000e-61 246.0
15 TraesCS3D01G521100 chr7D 80.844 308 53 4 2 305 164641952 164642257 1.790000e-58 237.0
16 TraesCS3D01G521100 chr7D 100.000 31 0 0 1671 1701 422141678 422141708 1.490000e-04 58.4
17 TraesCS3D01G521100 chr7B 80.808 297 52 3 2 296 594899999 594899706 1.080000e-55 228.0
18 TraesCS3D01G521100 chr4A 81.338 284 50 3 23 305 467253932 467254213 1.080000e-55 228.0
19 TraesCS3D01G521100 chr4A 95.000 40 1 1 1670 1709 712514908 712514870 1.160000e-05 62.1
20 TraesCS3D01G521100 chr1A 80.537 298 53 3 2 297 13310524 13310230 1.390000e-54 224.0
21 TraesCS3D01G521100 chr1A 100.000 31 0 0 1671 1701 579724962 579724932 1.490000e-04 58.4
22 TraesCS3D01G521100 chr1A 100.000 31 0 0 1671 1701 586834760 586834730 1.490000e-04 58.4
23 TraesCS3D01G521100 chr2A 80.272 294 55 3 14 306 740876471 740876180 6.480000e-53 219.0
24 TraesCS3D01G521100 chr7A 80.277 289 52 4 8 295 734933098 734932814 3.010000e-51 213.0
25 TraesCS3D01G521100 chr4D 80.727 275 51 2 33 307 223116015 223116287 3.010000e-51 213.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G521100 chr3D 603112003 603115853 3850 False 7112.000 7112 100.00000 1 3851 1 chr3D.!!$F1 3850
1 TraesCS3D01G521100 chr3D 603149997 603151426 1429 False 2446.000 2446 97.55600 2423 3851 1 chr3D.!!$F2 1428
2 TraesCS3D01G521100 chr3D 603140039 603140956 917 False 619.000 800 96.04300 1669 2429 2 chr3D.!!$F3 760
3 TraesCS3D01G521100 chr3A 732912533 732916439 3906 True 1296.500 3635 92.98425 1 3851 4 chr3A.!!$R2 3850
4 TraesCS3D01G521100 chr3B 810622501 810626837 4336 True 1096.025 3227 94.36075 631 3851 4 chr3B.!!$R1 3220

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
112 113 0.170339 GCCTTAGCACGGCGATTTTT 59.830 50.0 16.62 0.00 37.87 1.94 F
402 403 0.319211 CGCGTACACACTCCTCCAAA 60.319 55.0 0.00 0.00 0.00 3.28 F
1050 2611 0.343372 TCCTGCTCCCCCTATTCACT 59.657 55.0 0.00 0.00 0.00 3.41 F
2194 3932 0.032615 ACTTCATCCTCGAGGCTCCT 60.033 55.0 27.39 8.18 34.44 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1056 2617 0.815734 TAGTCCTGCGCCTTAGACAC 59.184 55.000 4.18 0.0 0.00 3.67 R
1761 3329 1.000955 CGACGGCCTTTCTATGCCTAT 59.999 52.381 0.00 0.0 45.71 2.57 R
2553 4295 1.482593 GTCATCGTCTCCTCCACCATT 59.517 52.381 0.00 0.0 0.00 3.16 R
3619 5480 0.111253 GCCCCAGCATTGGTATAGCT 59.889 55.000 3.20 0.0 43.40 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 1.797713 CGCGTGTCTACATGTCGGATT 60.798 52.381 0.00 0.00 35.38 3.01
34 35 3.791887 CGTGTCTACATGTCGGATTCTTC 59.208 47.826 0.00 0.00 0.00 2.87
43 44 4.553756 TGTCGGATTCTTCTGATCTACG 57.446 45.455 0.00 0.00 39.43 3.51
55 56 7.476667 TCTTCTGATCTACGTTTCTCTTCATC 58.523 38.462 0.00 0.00 0.00 2.92
63 64 0.740868 TTTCTCTTCATCGGCGGCAG 60.741 55.000 10.53 0.00 0.00 4.85
75 76 1.444119 GGCGGCAGTTGTTGTTCTGA 61.444 55.000 3.07 0.00 34.02 3.27
81 82 2.223144 GCAGTTGTTGTTCTGATACGCA 59.777 45.455 0.00 0.00 34.02 5.24
82 83 3.665323 GCAGTTGTTGTTCTGATACGCAG 60.665 47.826 0.00 0.00 46.31 5.18
86 87 2.000447 GTTGTTCTGATACGCAGGTCC 59.000 52.381 0.00 0.00 44.98 4.46
94 95 0.393077 ATACGCAGGTCCTATGGTGC 59.607 55.000 0.00 0.00 0.00 5.01
112 113 0.170339 GCCTTAGCACGGCGATTTTT 59.830 50.000 16.62 0.00 37.87 1.94
113 114 1.794076 GCCTTAGCACGGCGATTTTTC 60.794 52.381 16.62 0.00 37.87 2.29
116 117 0.717224 TAGCACGGCGATTTTTCGAC 59.283 50.000 16.62 0.00 37.87 4.20
124 125 2.991190 GGCGATTTTTCGACTGTCTACA 59.009 45.455 6.21 0.00 38.28 2.74
131 132 6.483385 TTTTTCGACTGTCTACAACAACAA 57.517 33.333 6.21 0.00 37.45 2.83
161 162 2.520982 TCCGATGAGGTAGGGGCG 60.521 66.667 0.00 0.00 41.99 6.13
166 167 1.270907 GATGAGGTAGGGGCGATGAT 58.729 55.000 0.00 0.00 0.00 2.45
207 208 1.202348 CTCCAGTGCATGTAGTCGTCA 59.798 52.381 0.00 0.00 0.00 4.35
211 212 3.181486 CCAGTGCATGTAGTCGTCACTAT 60.181 47.826 0.00 0.00 37.45 2.12
218 219 2.751259 TGTAGTCGTCACTATGTGGTCC 59.249 50.000 0.00 0.00 37.45 4.46
220 221 1.544691 AGTCGTCACTATGTGGTCCAC 59.455 52.381 15.64 15.64 33.87 4.02
222 223 0.457853 CGTCACTATGTGGTCCACGG 60.458 60.000 17.27 11.82 37.14 4.94
287 288 6.986817 ACCTTGACAGTTTATGAATAGATCGG 59.013 38.462 0.00 0.00 0.00 4.18
358 359 8.770828 GTGATTTGTTGGTATAATATAGCACGT 58.229 33.333 11.25 0.00 0.00 4.49
398 399 2.874780 CGCGCGTACACACTCCTC 60.875 66.667 24.19 0.00 0.00 3.71
399 400 2.506438 GCGCGTACACACTCCTCC 60.506 66.667 8.43 0.00 0.00 4.30
400 401 2.959372 CGCGTACACACTCCTCCA 59.041 61.111 0.00 0.00 0.00 3.86
401 402 1.287815 CGCGTACACACTCCTCCAA 59.712 57.895 0.00 0.00 0.00 3.53
402 403 0.319211 CGCGTACACACTCCTCCAAA 60.319 55.000 0.00 0.00 0.00 3.28
403 404 1.671850 CGCGTACACACTCCTCCAAAT 60.672 52.381 0.00 0.00 0.00 2.32
404 405 2.000447 GCGTACACACTCCTCCAAATC 59.000 52.381 0.00 0.00 0.00 2.17
577 856 2.040178 ACTCCCTCCATACTAAAGCGG 58.960 52.381 0.00 0.00 0.00 5.52
591 870 5.803118 ACTAAAGCGGCGTCAAATTAATAC 58.197 37.500 9.37 0.00 0.00 1.89
597 876 2.937799 GGCGTCAAATTAATACGGGTCA 59.062 45.455 10.39 0.00 37.12 4.02
608 887 4.736611 AATACGGGTCAGAGGGACTATA 57.263 45.455 0.00 0.00 46.16 1.31
609 888 2.660670 ACGGGTCAGAGGGACTATAG 57.339 55.000 0.00 0.00 46.16 1.31
610 889 2.133520 ACGGGTCAGAGGGACTATAGA 58.866 52.381 6.78 0.00 46.16 1.98
611 890 2.512896 ACGGGTCAGAGGGACTATAGAA 59.487 50.000 6.78 0.00 46.16 2.10
612 891 2.885894 CGGGTCAGAGGGACTATAGAAC 59.114 54.545 6.78 0.03 46.16 3.01
613 892 3.687551 CGGGTCAGAGGGACTATAGAACA 60.688 52.174 6.78 0.00 46.16 3.18
614 893 4.484912 GGGTCAGAGGGACTATAGAACAT 58.515 47.826 6.78 0.00 46.16 2.71
615 894 4.902448 GGGTCAGAGGGACTATAGAACATT 59.098 45.833 6.78 0.00 46.16 2.71
616 895 5.367060 GGGTCAGAGGGACTATAGAACATTT 59.633 44.000 6.78 0.00 46.16 2.32
617 896 6.284459 GGTCAGAGGGACTATAGAACATTTG 58.716 44.000 6.78 2.47 46.16 2.32
618 897 5.755861 GTCAGAGGGACTATAGAACATTTGC 59.244 44.000 6.78 0.00 41.55 3.68
619 898 5.663106 TCAGAGGGACTATAGAACATTTGCT 59.337 40.000 6.78 0.00 41.55 3.91
620 899 6.156949 TCAGAGGGACTATAGAACATTTGCTT 59.843 38.462 6.78 0.00 41.55 3.91
621 900 6.481644 CAGAGGGACTATAGAACATTTGCTTC 59.518 42.308 6.78 0.00 41.55 3.86
622 901 6.385467 AGAGGGACTATAGAACATTTGCTTCT 59.615 38.462 6.78 0.00 41.55 2.85
623 902 7.565398 AGAGGGACTATAGAACATTTGCTTCTA 59.435 37.037 6.78 0.00 41.55 2.10
624 903 7.731054 AGGGACTATAGAACATTTGCTTCTAG 58.269 38.462 6.78 0.00 36.02 2.43
625 904 7.345914 AGGGACTATAGAACATTTGCTTCTAGT 59.654 37.037 6.78 0.00 36.02 2.57
626 905 8.639761 GGGACTATAGAACATTTGCTTCTAGTA 58.360 37.037 6.78 0.00 34.46 1.82
664 943 8.621532 AGACATGCTTTTTGTTACTGAATAGA 57.378 30.769 0.00 0.00 0.00 1.98
697 2227 2.031157 GCAATGGACGGTATGCCAATAC 60.031 50.000 0.00 0.00 37.78 1.89
719 2249 4.586841 ACTAGTGAGATGGCTGGACTAATC 59.413 45.833 0.00 0.00 0.00 1.75
727 2257 1.070914 GGCTGGACTAATCTGGGCTAC 59.929 57.143 0.00 0.00 0.00 3.58
728 2258 1.762957 GCTGGACTAATCTGGGCTACA 59.237 52.381 0.00 0.00 0.00 2.74
731 2261 4.040461 GCTGGACTAATCTGGGCTACATTA 59.960 45.833 0.00 0.00 0.00 1.90
732 2262 5.280215 GCTGGACTAATCTGGGCTACATTAT 60.280 44.000 0.00 0.00 0.00 1.28
938 2498 3.728864 GCCGATGCACACAAATTAGACAG 60.729 47.826 0.00 0.00 37.47 3.51
971 2531 5.234466 AGATCAGTGGCACTTAAACTTCT 57.766 39.130 19.43 7.12 0.00 2.85
1007 2568 2.098934 GCACCAGTGACACAATGAACAA 59.901 45.455 8.59 0.00 30.53 2.83
1040 2601 0.463620 GTCATCACTCTCCTGCTCCC 59.536 60.000 0.00 0.00 0.00 4.30
1050 2611 0.343372 TCCTGCTCCCCCTATTCACT 59.657 55.000 0.00 0.00 0.00 3.41
1055 2616 1.428869 CTCCCCCTATTCACTCTGGG 58.571 60.000 0.00 0.00 39.37 4.45
1059 2620 1.584724 CCCTATTCACTCTGGGGTGT 58.415 55.000 0.31 0.00 38.28 4.16
1085 2652 1.305930 CGCAGGACTAACCAAAGCCC 61.306 60.000 0.00 0.00 42.04 5.19
1088 2655 1.002502 GGACTAACCAAAGCCCGCT 60.003 57.895 0.00 0.00 38.79 5.52
1404 2971 2.183046 GGCGTCACTGAGCTCCTC 59.817 66.667 12.15 0.00 0.00 3.71
1587 3154 4.008330 CGAGGACATACTATGGGACGTAT 58.992 47.826 0.00 0.00 33.60 3.06
1604 3171 7.068962 TGGGACGTATGTAAGATCACTCAATTA 59.931 37.037 0.00 0.00 0.00 1.40
1606 3173 9.309516 GGACGTATGTAAGATCACTCAATTAAA 57.690 33.333 0.00 0.00 0.00 1.52
1633 3200 6.713903 TCACTACCGTAATAACTAGCTATGCT 59.286 38.462 0.00 0.00 43.41 3.79
1637 3204 5.535406 ACCGTAATAACTAGCTATGCTGACT 59.465 40.000 1.96 0.00 40.10 3.41
1653 3220 3.681897 GCTGACTGATTATTCTATGCCGG 59.318 47.826 0.00 0.00 0.00 6.13
1666 3233 2.049156 GCCGGCAGCTTTTTGTCC 60.049 61.111 24.80 0.00 38.99 4.02
1761 3329 4.914177 TCATATATGCTGAGGCCAATCA 57.086 40.909 5.01 0.00 37.74 2.57
1795 3363 1.447663 CGTCGGCACACCATCATGA 60.448 57.895 0.00 0.00 34.57 3.07
1864 3433 2.680312 AATGCGATGTACTGCTCACT 57.320 45.000 0.00 0.00 0.00 3.41
1865 3434 3.801114 AATGCGATGTACTGCTCACTA 57.199 42.857 0.00 0.00 0.00 2.74
2194 3932 0.032615 ACTTCATCCTCGAGGCTCCT 60.033 55.000 27.39 8.18 34.44 3.69
2198 3936 0.676736 CATCCTCGAGGCTCCTAACC 59.323 60.000 27.39 0.00 34.44 2.85
2199 3937 0.824182 ATCCTCGAGGCTCCTAACCG 60.824 60.000 27.39 0.00 34.44 4.44
2200 3938 1.753463 CCTCGAGGCTCCTAACCGT 60.753 63.158 20.67 0.00 0.00 4.83
2201 3939 0.465097 CCTCGAGGCTCCTAACCGTA 60.465 60.000 20.67 0.00 0.00 4.02
2699 4441 2.457366 AAGTTCGTGCAGGGACTTAG 57.543 50.000 27.51 0.00 34.60 2.18
2767 4509 1.549203 GATGATTGGGGCACTGTTGT 58.451 50.000 0.00 0.00 0.00 3.32
2827 4569 1.953559 TATCCGAGCTTTGTGCATCC 58.046 50.000 0.00 0.00 45.94 3.51
2835 4577 3.944015 GAGCTTTGTGCATCCTGAGTATT 59.056 43.478 0.00 0.00 45.94 1.89
2937 4679 4.509600 GGCTTTAAGATCTGGATCAAGTCG 59.490 45.833 12.34 0.77 40.22 4.18
2952 4694 2.735134 CAAGTCGCCTTTAGGTGTGTAC 59.265 50.000 9.05 1.10 45.57 2.90
2954 4696 2.029290 AGTCGCCTTTAGGTGTGTACTG 60.029 50.000 9.05 0.00 45.57 2.74
3130 4888 7.413000 CGGGTTCAAGTAGAAATTACAGTCATG 60.413 40.741 0.00 0.00 38.13 3.07
3154 4912 7.280356 TGTTATATGGAAGAAAGTCTAAGCCC 58.720 38.462 0.00 0.00 0.00 5.19
3282 5143 3.407698 TGGAAACGCACATAACTCACAT 58.592 40.909 0.00 0.00 0.00 3.21
3283 5144 3.188254 TGGAAACGCACATAACTCACATG 59.812 43.478 0.00 0.00 0.00 3.21
3284 5145 3.435327 GGAAACGCACATAACTCACATGA 59.565 43.478 0.00 0.00 0.00 3.07
3285 5146 4.094887 GGAAACGCACATAACTCACATGAT 59.905 41.667 0.00 0.00 0.00 2.45
3286 5147 5.293324 GGAAACGCACATAACTCACATGATA 59.707 40.000 0.00 0.00 0.00 2.15
3287 5148 6.183360 GGAAACGCACATAACTCACATGATAA 60.183 38.462 0.00 0.00 0.00 1.75
3288 5149 5.973651 ACGCACATAACTCACATGATAAG 57.026 39.130 0.00 0.00 0.00 1.73
3289 5150 4.811024 ACGCACATAACTCACATGATAAGG 59.189 41.667 0.00 0.00 0.00 2.69
3290 5151 4.212004 CGCACATAACTCACATGATAAGGG 59.788 45.833 0.00 0.00 0.00 3.95
3291 5152 4.516698 GCACATAACTCACATGATAAGGGG 59.483 45.833 0.00 0.00 0.00 4.79
3292 5153 5.687441 GCACATAACTCACATGATAAGGGGA 60.687 44.000 0.00 0.00 0.00 4.81
3293 5154 5.994054 CACATAACTCACATGATAAGGGGAG 59.006 44.000 0.00 0.00 0.00 4.30
3294 5155 5.072329 ACATAACTCACATGATAAGGGGAGG 59.928 44.000 0.00 0.00 0.00 4.30
3295 5156 3.136641 ACTCACATGATAAGGGGAGGT 57.863 47.619 0.00 0.00 0.00 3.85
3296 5157 2.774234 ACTCACATGATAAGGGGAGGTG 59.226 50.000 0.00 0.00 0.00 4.00
3297 5158 3.041211 CTCACATGATAAGGGGAGGTGA 58.959 50.000 0.00 0.00 33.30 4.02
3298 5159 3.455910 CTCACATGATAAGGGGAGGTGAA 59.544 47.826 0.00 0.00 33.89 3.18
3299 5160 3.455910 TCACATGATAAGGGGAGGTGAAG 59.544 47.826 0.00 0.00 31.55 3.02
3300 5161 3.200825 CACATGATAAGGGGAGGTGAAGT 59.799 47.826 0.00 0.00 0.00 3.01
3301 5162 4.408921 CACATGATAAGGGGAGGTGAAGTA 59.591 45.833 0.00 0.00 0.00 2.24
3302 5163 4.409247 ACATGATAAGGGGAGGTGAAGTAC 59.591 45.833 0.00 0.00 0.00 2.73
3303 5164 4.069312 TGATAAGGGGAGGTGAAGTACA 57.931 45.455 0.00 0.00 0.00 2.90
3316 5177 2.628178 TGAAGTACACACCTGAGAGTGG 59.372 50.000 9.23 0.00 42.28 4.00
3318 5179 1.147191 AGTACACACCTGAGAGTGGGA 59.853 52.381 9.74 0.00 44.30 4.37
3319 5180 1.968493 GTACACACCTGAGAGTGGGAA 59.032 52.381 9.74 0.00 44.30 3.97
3320 5181 1.051812 ACACACCTGAGAGTGGGAAG 58.948 55.000 9.74 0.00 44.30 3.46
3321 5182 1.051812 CACACCTGAGAGTGGGAAGT 58.948 55.000 6.14 0.00 44.30 3.01
3322 5183 2.248248 CACACCTGAGAGTGGGAAGTA 58.752 52.381 6.14 0.00 44.30 2.24
3323 5184 2.632996 CACACCTGAGAGTGGGAAGTAA 59.367 50.000 6.14 0.00 44.30 2.24
3324 5185 3.261897 CACACCTGAGAGTGGGAAGTAAT 59.738 47.826 6.14 0.00 44.30 1.89
3325 5186 3.910627 ACACCTGAGAGTGGGAAGTAATT 59.089 43.478 6.14 0.00 42.28 1.40
3326 5187 4.256920 CACCTGAGAGTGGGAAGTAATTG 58.743 47.826 0.00 0.00 33.95 2.32
3327 5188 3.274288 CCTGAGAGTGGGAAGTAATTGC 58.726 50.000 0.00 0.00 0.00 3.56
3328 5189 3.307691 CCTGAGAGTGGGAAGTAATTGCA 60.308 47.826 0.00 0.00 0.00 4.08
3329 5190 4.326826 CTGAGAGTGGGAAGTAATTGCAA 58.673 43.478 0.00 0.00 0.00 4.08
3330 5191 4.326826 TGAGAGTGGGAAGTAATTGCAAG 58.673 43.478 4.94 0.00 0.00 4.01
3331 5192 4.041567 TGAGAGTGGGAAGTAATTGCAAGA 59.958 41.667 4.94 0.00 0.00 3.02
3332 5193 4.583871 AGAGTGGGAAGTAATTGCAAGAG 58.416 43.478 4.94 0.00 0.00 2.85
3333 5194 4.287067 AGAGTGGGAAGTAATTGCAAGAGA 59.713 41.667 4.94 0.00 0.00 3.10
3334 5195 4.985538 AGTGGGAAGTAATTGCAAGAGAA 58.014 39.130 4.94 0.00 0.00 2.87
3335 5196 5.574188 AGTGGGAAGTAATTGCAAGAGAAT 58.426 37.500 4.94 0.00 0.00 2.40
3336 5197 5.416952 AGTGGGAAGTAATTGCAAGAGAATG 59.583 40.000 4.94 0.00 0.00 2.67
3337 5198 4.158394 TGGGAAGTAATTGCAAGAGAATGC 59.842 41.667 4.94 0.00 46.58 3.56
3348 5209 4.801891 GCAAGAGAATGCAAGAAATCACA 58.198 39.130 0.00 0.00 45.70 3.58
3349 5210 5.408356 GCAAGAGAATGCAAGAAATCACAT 58.592 37.500 0.00 0.00 45.70 3.21
3350 5211 5.515626 GCAAGAGAATGCAAGAAATCACATC 59.484 40.000 0.00 0.00 45.70 3.06
3351 5212 6.617879 CAAGAGAATGCAAGAAATCACATCA 58.382 36.000 0.00 0.00 0.00 3.07
3352 5213 6.829229 AGAGAATGCAAGAAATCACATCAA 57.171 33.333 0.00 0.00 0.00 2.57
3353 5214 7.223260 AGAGAATGCAAGAAATCACATCAAA 57.777 32.000 0.00 0.00 0.00 2.69
3354 5215 7.663827 AGAGAATGCAAGAAATCACATCAAAA 58.336 30.769 0.00 0.00 0.00 2.44
3355 5216 7.813148 AGAGAATGCAAGAAATCACATCAAAAG 59.187 33.333 0.00 0.00 0.00 2.27
3356 5217 7.439381 AGAATGCAAGAAATCACATCAAAAGT 58.561 30.769 0.00 0.00 0.00 2.66
3357 5218 7.597743 AGAATGCAAGAAATCACATCAAAAGTC 59.402 33.333 0.00 0.00 0.00 3.01
3358 5219 6.395426 TGCAAGAAATCACATCAAAAGTCT 57.605 33.333 0.00 0.00 0.00 3.24
3359 5220 6.210796 TGCAAGAAATCACATCAAAAGTCTG 58.789 36.000 0.00 0.00 0.00 3.51
3360 5221 6.183360 TGCAAGAAATCACATCAAAAGTCTGT 60.183 34.615 0.00 0.00 0.00 3.41
3361 5222 6.143438 GCAAGAAATCACATCAAAAGTCTGTG 59.857 38.462 0.00 0.00 41.24 3.66
3362 5223 6.323203 AGAAATCACATCAAAAGTCTGTGG 57.677 37.500 2.45 0.00 40.47 4.17
3363 5224 5.242393 AGAAATCACATCAAAAGTCTGTGGG 59.758 40.000 2.45 0.00 40.47 4.61
3364 5225 3.855255 TCACATCAAAAGTCTGTGGGA 57.145 42.857 2.45 0.00 40.47 4.37
3365 5226 4.163441 TCACATCAAAAGTCTGTGGGAA 57.837 40.909 2.45 0.00 40.47 3.97
3366 5227 4.136796 TCACATCAAAAGTCTGTGGGAAG 58.863 43.478 2.45 0.00 40.47 3.46
3367 5228 3.254166 CACATCAAAAGTCTGTGGGAAGG 59.746 47.826 0.00 0.00 37.27 3.46
3368 5229 1.981256 TCAAAAGTCTGTGGGAAGGC 58.019 50.000 0.00 0.00 0.00 4.35
3369 5230 1.214175 TCAAAAGTCTGTGGGAAGGCA 59.786 47.619 0.00 0.00 0.00 4.75
3370 5231 2.031120 CAAAAGTCTGTGGGAAGGCAA 58.969 47.619 0.00 0.00 0.00 4.52
3371 5232 2.430332 CAAAAGTCTGTGGGAAGGCAAA 59.570 45.455 0.00 0.00 0.00 3.68
3372 5233 2.452600 AAGTCTGTGGGAAGGCAAAA 57.547 45.000 0.00 0.00 0.00 2.44
3373 5234 2.452600 AGTCTGTGGGAAGGCAAAAA 57.547 45.000 0.00 0.00 0.00 1.94
3374 5235 2.031870 AGTCTGTGGGAAGGCAAAAAC 58.968 47.619 0.00 0.00 0.00 2.43
3375 5236 1.754226 GTCTGTGGGAAGGCAAAAACA 59.246 47.619 0.00 0.00 0.00 2.83
3376 5237 1.754226 TCTGTGGGAAGGCAAAAACAC 59.246 47.619 0.00 0.00 0.00 3.32
3377 5238 1.756538 CTGTGGGAAGGCAAAAACACT 59.243 47.619 0.00 0.00 0.00 3.55
3378 5239 2.168313 CTGTGGGAAGGCAAAAACACTT 59.832 45.455 0.00 0.00 0.00 3.16
3379 5240 3.366396 TGTGGGAAGGCAAAAACACTTA 58.634 40.909 0.00 0.00 0.00 2.24
3380 5241 3.131400 TGTGGGAAGGCAAAAACACTTAC 59.869 43.478 0.00 0.00 0.00 2.34
3381 5242 2.696187 TGGGAAGGCAAAAACACTTACC 59.304 45.455 0.00 0.00 44.01 2.85
3382 5243 2.696187 GGGAAGGCAAAAACACTTACCA 59.304 45.455 0.00 0.00 43.36 3.25
3574 5435 8.737168 TTTTCTAGATACTGTGCTGCATAAAT 57.263 30.769 5.27 0.00 0.00 1.40
3652 5516 2.856222 CTGGGGCTCACTTTCCATATC 58.144 52.381 0.00 0.00 0.00 1.63
3677 5541 2.249309 TCTTACTCCCACTCCCCTTC 57.751 55.000 0.00 0.00 0.00 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 0.633733 CGACATGTAGACACGCGAAC 59.366 55.000 15.93 3.14 0.00 3.95
12 13 3.422417 AGAATCCGACATGTAGACACG 57.578 47.619 7.62 2.11 0.00 4.49
30 31 6.819397 TGAAGAGAAACGTAGATCAGAAGA 57.181 37.500 0.00 0.00 0.00 2.87
34 35 4.973051 CCGATGAAGAGAAACGTAGATCAG 59.027 45.833 0.00 0.00 0.00 2.90
43 44 1.019278 TGCCGCCGATGAAGAGAAAC 61.019 55.000 0.00 0.00 0.00 2.78
55 56 2.051345 GAACAACAACTGCCGCCG 60.051 61.111 0.00 0.00 0.00 6.46
63 64 2.806244 ACCTGCGTATCAGAACAACAAC 59.194 45.455 0.00 0.00 45.72 3.32
75 76 0.393077 GCACCATAGGACCTGCGTAT 59.607 55.000 3.53 0.00 0.00 3.06
81 82 1.132500 GCTAAGGCACCATAGGACCT 58.868 55.000 0.00 0.00 38.54 3.85
82 83 0.837272 TGCTAAGGCACCATAGGACC 59.163 55.000 1.46 0.00 44.28 4.46
94 95 1.529010 CGAAAAATCGCCGTGCTAAGG 60.529 52.381 0.00 0.00 0.00 2.69
104 105 4.084745 TGTTGTAGACAGTCGAAAAATCGC 60.085 41.667 0.00 0.00 33.40 4.58
112 113 3.131577 ACCTTGTTGTTGTAGACAGTCGA 59.868 43.478 0.00 0.00 39.94 4.20
113 114 3.454375 ACCTTGTTGTTGTAGACAGTCG 58.546 45.455 0.00 0.00 39.94 4.18
116 117 4.351192 GCAAACCTTGTTGTTGTAGACAG 58.649 43.478 0.00 0.00 39.94 3.51
124 125 0.458260 GACGGGCAAACCTTGTTGTT 59.542 50.000 0.00 0.00 36.97 2.83
161 162 4.615815 AGGAGCGCCGCCATCATC 62.616 66.667 17.94 0.00 39.96 2.92
175 176 4.033776 CTGGAGCGGGCCAAAGGA 62.034 66.667 4.39 0.00 37.52 3.36
189 190 1.067565 AGTGACGACTACATGCACTGG 60.068 52.381 0.00 0.00 38.30 4.00
207 208 0.252103 AGACCCGTGGACCACATAGT 60.252 55.000 24.18 16.75 33.40 2.12
211 212 3.238497 CCAGACCCGTGGACCACA 61.238 66.667 24.18 0.00 40.44 4.17
245 246 9.095065 CTGTCAAGGTAGTATAAATAACACCAC 57.905 37.037 0.00 0.00 0.00 4.16
304 305 4.462834 TGATCCATGACGAGTGTAGAAGTT 59.537 41.667 0.00 0.00 0.00 2.66
305 306 4.017126 TGATCCATGACGAGTGTAGAAGT 58.983 43.478 0.00 0.00 0.00 3.01
306 307 4.639135 TGATCCATGACGAGTGTAGAAG 57.361 45.455 0.00 0.00 0.00 2.85
307 308 4.705023 TCTTGATCCATGACGAGTGTAGAA 59.295 41.667 0.00 0.00 0.00 2.10
358 359 1.626356 GCAGGGCAGGTAGGATGTGA 61.626 60.000 0.00 0.00 0.00 3.58
386 387 3.003480 GCAGATTTGGAGGAGTGTGTAC 58.997 50.000 0.00 0.00 0.00 2.90
387 388 2.637382 TGCAGATTTGGAGGAGTGTGTA 59.363 45.455 0.00 0.00 0.00 2.90
425 703 6.516693 CAAATGGTTTGAAAGGTAGAGAACCC 60.517 42.308 0.00 0.00 45.56 4.11
473 752 6.320494 TCGTGTTTATACTGCAAATGGTTT 57.680 33.333 0.00 0.00 0.00 3.27
474 753 5.950758 TCGTGTTTATACTGCAAATGGTT 57.049 34.783 0.00 0.00 0.00 3.67
475 754 5.950758 TTCGTGTTTATACTGCAAATGGT 57.049 34.783 0.00 0.00 0.00 3.55
476 755 7.328249 ACATTTTCGTGTTTATACTGCAAATGG 59.672 33.333 13.39 0.00 33.25 3.16
477 756 8.226543 ACATTTTCGTGTTTATACTGCAAATG 57.773 30.769 0.00 0.00 34.12 2.32
478 757 8.810652 AACATTTTCGTGTTTATACTGCAAAT 57.189 26.923 0.00 0.00 39.15 2.32
479 758 8.132362 AGAACATTTTCGTGTTTATACTGCAAA 58.868 29.630 0.00 0.00 42.08 3.68
480 759 7.589587 CAGAACATTTTCGTGTTTATACTGCAA 59.410 33.333 0.00 0.00 42.08 4.08
481 760 7.041712 TCAGAACATTTTCGTGTTTATACTGCA 60.042 33.333 0.00 0.00 42.08 4.41
577 856 3.866910 TCTGACCCGTATTAATTTGACGC 59.133 43.478 4.11 0.00 35.28 5.19
591 870 2.885894 GTTCTATAGTCCCTCTGACCCG 59.114 54.545 0.00 0.00 45.68 5.28
597 876 6.385467 AGAAGCAAATGTTCTATAGTCCCTCT 59.615 38.462 0.00 0.00 32.29 3.69
627 906 9.236006 ACAAAAAGCATGTCTCTTTATATCACT 57.764 29.630 0.00 0.00 33.77 3.41
628 907 9.846248 AACAAAAAGCATGTCTCTTTATATCAC 57.154 29.630 0.00 0.00 33.77 3.06
633 912 9.066892 TCAGTAACAAAAAGCATGTCTCTTTAT 57.933 29.630 0.00 0.00 33.77 1.40
634 913 8.445275 TCAGTAACAAAAAGCATGTCTCTTTA 57.555 30.769 0.00 0.00 33.77 1.85
673 952 1.419762 TGGCATACCGTCCATTGCTAT 59.580 47.619 0.00 0.00 39.70 2.97
697 2227 4.832266 AGATTAGTCCAGCCATCTCACTAG 59.168 45.833 0.00 0.00 0.00 2.57
719 2249 4.170468 ACCAAAGGATAATGTAGCCCAG 57.830 45.455 0.00 0.00 33.87 4.45
731 2261 8.814931 TCAACATCAATAATTCAACCAAAGGAT 58.185 29.630 0.00 0.00 0.00 3.24
732 2262 8.187913 TCAACATCAATAATTCAACCAAAGGA 57.812 30.769 0.00 0.00 0.00 3.36
938 2498 4.752101 GTGCCACTGATCTTCCACATATAC 59.248 45.833 0.00 0.00 0.00 1.47
1007 2568 4.307432 AGTGATGACGAAAACGAAGATGT 58.693 39.130 0.00 0.00 0.00 3.06
1040 2601 1.486726 GACACCCCAGAGTGAATAGGG 59.513 57.143 0.00 0.00 43.88 3.53
1050 2611 2.656069 GCGCCTTAGACACCCCAGA 61.656 63.158 0.00 0.00 0.00 3.86
1055 2616 1.448013 GTCCTGCGCCTTAGACACC 60.448 63.158 4.18 0.00 0.00 4.16
1056 2617 0.815734 TAGTCCTGCGCCTTAGACAC 59.184 55.000 4.18 0.00 0.00 3.67
1057 2618 1.203994 GTTAGTCCTGCGCCTTAGACA 59.796 52.381 4.18 0.00 0.00 3.41
1058 2619 1.471153 GGTTAGTCCTGCGCCTTAGAC 60.471 57.143 4.18 6.52 0.00 2.59
1059 2620 0.822164 GGTTAGTCCTGCGCCTTAGA 59.178 55.000 4.18 0.00 0.00 2.10
1209 2776 4.595538 ACGACGTTCTTGGCGCCA 62.596 61.111 29.03 29.03 0.00 5.69
1350 2917 1.736365 GCCAGTAGTCCCCGTAGCTC 61.736 65.000 0.00 0.00 0.00 4.09
1560 3127 1.067565 CCATAGTATGTCCTCGCGCAT 60.068 52.381 8.75 0.96 0.00 4.73
1606 3173 8.027771 GCATAGCTAGTTATTACGGTAGTGATT 58.972 37.037 0.00 0.00 0.00 2.57
1633 3200 3.070878 TGCCGGCATAGAATAATCAGTCA 59.929 43.478 29.03 0.00 0.00 3.41
1637 3204 2.038952 AGCTGCCGGCATAGAATAATCA 59.961 45.455 32.87 1.17 44.79 2.57
1653 3220 2.049156 GCCCGGACAAAAAGCTGC 60.049 61.111 0.73 0.00 0.00 5.25
1761 3329 1.000955 CGACGGCCTTTCTATGCCTAT 59.999 52.381 0.00 0.00 45.71 2.57
1795 3363 7.739825 AGATAGTGGAGTATGTTGTATGCATT 58.260 34.615 3.54 0.00 0.00 3.56
2043 3616 1.808390 GCACCCGGTATCGACACAC 60.808 63.158 0.00 0.00 39.00 3.82
2194 3932 5.409214 GCAACAAGAACCATAGTTACGGTTA 59.591 40.000 0.00 0.00 45.54 2.85
2198 3936 4.000988 AGGCAACAAGAACCATAGTTACG 58.999 43.478 0.00 0.00 35.69 3.18
2199 3937 5.959618 AAGGCAACAAGAACCATAGTTAC 57.040 39.130 0.00 0.00 35.69 2.50
2200 3938 7.011499 TCTAAGGCAACAAGAACCATAGTTA 57.989 36.000 0.00 0.00 35.69 2.24
2201 3939 5.876357 TCTAAGGCAACAAGAACCATAGTT 58.124 37.500 0.00 0.00 37.94 2.24
2367 4108 5.239087 ACATGAAAACAACATGGGCAAATTC 59.761 36.000 0.00 0.00 46.19 2.17
2371 4112 3.834489 ACATGAAAACAACATGGGCAA 57.166 38.095 0.00 0.00 46.19 4.52
2553 4295 1.482593 GTCATCGTCTCCTCCACCATT 59.517 52.381 0.00 0.00 0.00 3.16
2699 4441 3.791973 TCTTCTTTCTCTCATCCTCGC 57.208 47.619 0.00 0.00 0.00 5.03
2937 4679 2.474410 AGCAGTACACACCTAAAGGC 57.526 50.000 0.00 0.00 39.32 4.35
2952 4694 3.883830 ACTTCCTGTCATGTCTAGCAG 57.116 47.619 0.00 0.00 0.00 4.24
2954 4696 5.782893 ATCTACTTCCTGTCATGTCTAGC 57.217 43.478 0.00 0.00 0.00 3.42
2990 4748 8.358895 CACATAATGGGTATTGTAATTGCATCA 58.641 33.333 0.00 0.00 0.00 3.07
3005 4763 8.548877 ACTAACTTCTAATGTCACATAATGGGT 58.451 33.333 0.00 0.00 0.00 4.51
3130 4888 7.280356 TGGGCTTAGACTTTCTTCCATATAAC 58.720 38.462 0.00 0.00 0.00 1.89
3282 5143 3.773119 GTGTACTTCACCTCCCCTTATCA 59.227 47.826 0.00 0.00 40.84 2.15
3283 5144 3.773119 TGTGTACTTCACCTCCCCTTATC 59.227 47.826 0.00 0.00 45.61 1.75
3284 5145 3.518303 GTGTGTACTTCACCTCCCCTTAT 59.482 47.826 9.50 0.00 45.61 1.73
3285 5146 2.901839 GTGTGTACTTCACCTCCCCTTA 59.098 50.000 9.50 0.00 45.61 2.69
3286 5147 1.697982 GTGTGTACTTCACCTCCCCTT 59.302 52.381 9.50 0.00 45.61 3.95
3287 5148 1.349067 GTGTGTACTTCACCTCCCCT 58.651 55.000 9.50 0.00 45.61 4.79
3288 5149 3.929660 GTGTGTACTTCACCTCCCC 57.070 57.895 9.50 0.00 45.61 4.81
3294 5155 3.553096 CCACTCTCAGGTGTGTACTTCAC 60.553 52.174 11.41 11.41 46.31 3.18
3295 5156 2.628178 CCACTCTCAGGTGTGTACTTCA 59.372 50.000 0.00 0.00 35.81 3.02
3296 5157 2.028930 CCCACTCTCAGGTGTGTACTTC 60.029 54.545 0.00 0.00 35.81 3.01
3297 5158 1.971357 CCCACTCTCAGGTGTGTACTT 59.029 52.381 0.00 0.00 35.81 2.24
3298 5159 1.147191 TCCCACTCTCAGGTGTGTACT 59.853 52.381 0.00 0.00 35.81 2.73
3299 5160 1.629043 TCCCACTCTCAGGTGTGTAC 58.371 55.000 0.00 0.00 35.81 2.90
3300 5161 2.248248 CTTCCCACTCTCAGGTGTGTA 58.752 52.381 0.00 0.00 35.81 2.90
3301 5162 1.051812 CTTCCCACTCTCAGGTGTGT 58.948 55.000 0.00 0.00 35.81 3.72
3302 5163 1.051812 ACTTCCCACTCTCAGGTGTG 58.948 55.000 0.00 0.00 36.89 3.82
3303 5164 2.696526 TACTTCCCACTCTCAGGTGT 57.303 50.000 0.00 0.00 35.63 4.16
3304 5165 4.256920 CAATTACTTCCCACTCTCAGGTG 58.743 47.826 0.00 0.00 37.00 4.00
3305 5166 3.307762 GCAATTACTTCCCACTCTCAGGT 60.308 47.826 0.00 0.00 0.00 4.00
3306 5167 3.274288 GCAATTACTTCCCACTCTCAGG 58.726 50.000 0.00 0.00 0.00 3.86
3307 5168 3.942829 TGCAATTACTTCCCACTCTCAG 58.057 45.455 0.00 0.00 0.00 3.35
3308 5169 4.041567 TCTTGCAATTACTTCCCACTCTCA 59.958 41.667 0.00 0.00 0.00 3.27
3309 5170 4.579869 TCTTGCAATTACTTCCCACTCTC 58.420 43.478 0.00 0.00 0.00 3.20
3310 5171 4.287067 TCTCTTGCAATTACTTCCCACTCT 59.713 41.667 0.00 0.00 0.00 3.24
3311 5172 4.579869 TCTCTTGCAATTACTTCCCACTC 58.420 43.478 0.00 0.00 0.00 3.51
3312 5173 4.640771 TCTCTTGCAATTACTTCCCACT 57.359 40.909 0.00 0.00 0.00 4.00
3313 5174 5.644644 CATTCTCTTGCAATTACTTCCCAC 58.355 41.667 0.00 0.00 0.00 4.61
3314 5175 4.158394 GCATTCTCTTGCAATTACTTCCCA 59.842 41.667 0.00 0.00 42.31 4.37
3315 5176 4.676546 GCATTCTCTTGCAATTACTTCCC 58.323 43.478 0.00 0.00 42.31 3.97
3326 5187 4.801891 TGTGATTTCTTGCATTCTCTTGC 58.198 39.130 0.00 0.00 43.07 4.01
3327 5188 6.617879 TGATGTGATTTCTTGCATTCTCTTG 58.382 36.000 0.00 0.00 0.00 3.02
3328 5189 6.829229 TGATGTGATTTCTTGCATTCTCTT 57.171 33.333 0.00 0.00 0.00 2.85
3329 5190 6.829229 TTGATGTGATTTCTTGCATTCTCT 57.171 33.333 0.00 0.00 0.00 3.10
3330 5191 7.597743 ACTTTTGATGTGATTTCTTGCATTCTC 59.402 33.333 0.00 0.00 0.00 2.87
3331 5192 7.439381 ACTTTTGATGTGATTTCTTGCATTCT 58.561 30.769 0.00 0.00 0.00 2.40
3332 5193 7.597743 AGACTTTTGATGTGATTTCTTGCATTC 59.402 33.333 0.00 0.00 0.00 2.67
3333 5194 7.384115 CAGACTTTTGATGTGATTTCTTGCATT 59.616 33.333 0.00 0.00 0.00 3.56
3334 5195 6.866770 CAGACTTTTGATGTGATTTCTTGCAT 59.133 34.615 0.00 0.00 0.00 3.96
3335 5196 6.183360 ACAGACTTTTGATGTGATTTCTTGCA 60.183 34.615 0.00 0.00 0.00 4.08
3336 5197 6.143438 CACAGACTTTTGATGTGATTTCTTGC 59.857 38.462 0.00 0.00 45.67 4.01
3337 5198 6.639686 CCACAGACTTTTGATGTGATTTCTTG 59.360 38.462 6.14 0.00 45.67 3.02
3338 5199 6.239120 CCCACAGACTTTTGATGTGATTTCTT 60.239 38.462 6.14 0.00 45.67 2.52
3339 5200 5.242393 CCCACAGACTTTTGATGTGATTTCT 59.758 40.000 6.14 0.00 45.67 2.52
3340 5201 5.241506 TCCCACAGACTTTTGATGTGATTTC 59.758 40.000 6.14 0.00 45.67 2.17
3341 5202 5.139727 TCCCACAGACTTTTGATGTGATTT 58.860 37.500 6.14 0.00 45.67 2.17
3342 5203 4.728772 TCCCACAGACTTTTGATGTGATT 58.271 39.130 6.14 0.00 45.67 2.57
3343 5204 4.371624 TCCCACAGACTTTTGATGTGAT 57.628 40.909 6.14 0.00 45.67 3.06
3344 5205 3.855255 TCCCACAGACTTTTGATGTGA 57.145 42.857 6.14 0.00 45.67 3.58
3345 5206 3.254166 CCTTCCCACAGACTTTTGATGTG 59.746 47.826 0.00 0.00 43.11 3.21
3346 5207 3.490348 CCTTCCCACAGACTTTTGATGT 58.510 45.455 0.00 0.00 0.00 3.06
3347 5208 2.229784 GCCTTCCCACAGACTTTTGATG 59.770 50.000 0.00 0.00 0.00 3.07
3348 5209 2.158475 TGCCTTCCCACAGACTTTTGAT 60.158 45.455 0.00 0.00 0.00 2.57
3349 5210 1.214175 TGCCTTCCCACAGACTTTTGA 59.786 47.619 0.00 0.00 0.00 2.69
3350 5211 1.691196 TGCCTTCCCACAGACTTTTG 58.309 50.000 0.00 0.00 0.00 2.44
3351 5212 2.452600 TTGCCTTCCCACAGACTTTT 57.547 45.000 0.00 0.00 0.00 2.27
3352 5213 2.452600 TTTGCCTTCCCACAGACTTT 57.547 45.000 0.00 0.00 0.00 2.66
3353 5214 2.430694 GTTTTTGCCTTCCCACAGACTT 59.569 45.455 0.00 0.00 0.00 3.01
3354 5215 2.031870 GTTTTTGCCTTCCCACAGACT 58.968 47.619 0.00 0.00 0.00 3.24
3355 5216 1.754226 TGTTTTTGCCTTCCCACAGAC 59.246 47.619 0.00 0.00 0.00 3.51
3356 5217 1.754226 GTGTTTTTGCCTTCCCACAGA 59.246 47.619 0.00 0.00 0.00 3.41
3357 5218 1.756538 AGTGTTTTTGCCTTCCCACAG 59.243 47.619 0.00 0.00 0.00 3.66
3358 5219 1.859302 AGTGTTTTTGCCTTCCCACA 58.141 45.000 0.00 0.00 0.00 4.17
3359 5220 2.979814 AAGTGTTTTTGCCTTCCCAC 57.020 45.000 0.00 0.00 0.00 4.61
3360 5221 2.696187 GGTAAGTGTTTTTGCCTTCCCA 59.304 45.455 0.00 0.00 31.01 4.37
3361 5222 2.696187 TGGTAAGTGTTTTTGCCTTCCC 59.304 45.455 0.00 0.00 34.34 3.97
3362 5223 3.491964 GGTGGTAAGTGTTTTTGCCTTCC 60.492 47.826 0.00 0.00 34.34 3.46
3363 5224 3.131400 TGGTGGTAAGTGTTTTTGCCTTC 59.869 43.478 0.00 0.00 34.34 3.46
3364 5225 3.100671 TGGTGGTAAGTGTTTTTGCCTT 58.899 40.909 0.00 0.00 34.34 4.35
3365 5226 2.741145 TGGTGGTAAGTGTTTTTGCCT 58.259 42.857 0.00 0.00 34.34 4.75
3366 5227 3.118920 AGTTGGTGGTAAGTGTTTTTGCC 60.119 43.478 0.00 0.00 33.89 4.52
3367 5228 4.118093 AGTTGGTGGTAAGTGTTTTTGC 57.882 40.909 0.00 0.00 0.00 3.68
3368 5229 5.474825 ACAAGTTGGTGGTAAGTGTTTTTG 58.525 37.500 7.96 0.00 0.00 2.44
3369 5230 5.731957 ACAAGTTGGTGGTAAGTGTTTTT 57.268 34.783 7.96 0.00 0.00 1.94
3370 5231 5.731957 AACAAGTTGGTGGTAAGTGTTTT 57.268 34.783 7.96 0.00 0.00 2.43
3371 5232 5.474825 CAAACAAGTTGGTGGTAAGTGTTT 58.525 37.500 7.96 0.00 33.18 2.83
3372 5233 5.066968 CAAACAAGTTGGTGGTAAGTGTT 57.933 39.130 7.96 0.00 33.18 3.32
3373 5234 4.712122 CAAACAAGTTGGTGGTAAGTGT 57.288 40.909 7.96 0.00 33.18 3.55
3551 5412 8.421002 TGTATTTATGCAGCACAGTATCTAGAA 58.579 33.333 0.00 0.00 0.00 2.10
3566 5427 9.752961 CTTCATCATTGGAAATGTATTTATGCA 57.247 29.630 0.00 0.00 0.00 3.96
3574 5435 8.821686 AACATACCTTCATCATTGGAAATGTA 57.178 30.769 0.26 0.00 33.86 2.29
3619 5480 0.111253 GCCCCAGCATTGGTATAGCT 59.889 55.000 3.20 0.00 43.40 3.32
3652 5516 2.436173 GGGAGTGGGAGTAAGAAGATGG 59.564 54.545 0.00 0.00 0.00 3.51
3677 5541 7.731054 AGCTAGGAAAGGAACAACATATAGAG 58.269 38.462 0.00 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.