Multiple sequence alignment - TraesCS3D01G520400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G520400 chr3D 100.000 8875 0 0 1 8875 602805232 602796358 0.000000e+00 16390.0
1 TraesCS3D01G520400 chr3D 90.220 2638 203 20 5219 7854 604125132 604122548 0.000000e+00 3391.0
2 TraesCS3D01G520400 chr3D 87.828 1865 183 23 1252 3085 602781668 602779817 0.000000e+00 2146.0
3 TraesCS3D01G520400 chr3D 86.293 1999 212 38 1252 3228 603943511 603945469 0.000000e+00 2117.0
4 TraesCS3D01G520400 chr3D 86.798 1727 201 19 4505 6220 604027583 604025873 0.000000e+00 1901.0
5 TraesCS3D01G520400 chr3D 88.615 1581 152 13 6232 7796 604014855 604013287 0.000000e+00 1897.0
6 TraesCS3D01G520400 chr3D 85.779 1772 222 22 4504 6258 604025175 604023417 0.000000e+00 1849.0
7 TraesCS3D01G520400 chr3D 85.536 1763 231 20 4504 6257 604019768 604018021 0.000000e+00 1821.0
8 TraesCS3D01G520400 chr3D 83.014 1984 281 29 5745 7705 604137805 604135855 0.000000e+00 1746.0
9 TraesCS3D01G520400 chr3D 83.240 1778 258 17 1252 3004 604253012 604251250 0.000000e+00 1596.0
10 TraesCS3D01G520400 chr3D 83.210 1757 231 33 5982 7706 604143816 604142092 0.000000e+00 1552.0
11 TraesCS3D01G520400 chr3D 81.721 1685 252 29 6056 7711 604259200 604257543 0.000000e+00 1354.0
12 TraesCS3D01G520400 chr3D 81.458 1715 257 34 1321 3004 604137581 604135897 0.000000e+00 1349.0
13 TraesCS3D01G520400 chr3D 80.914 1729 263 40 5983 7678 603943577 603945271 0.000000e+00 1303.0
14 TraesCS3D01G520400 chr3D 85.052 1057 143 12 5211 6262 604021572 604020526 0.000000e+00 1062.0
15 TraesCS3D01G520400 chr3D 85.262 916 121 11 4697 5610 604016473 604015570 0.000000e+00 931.0
16 TraesCS3D01G520400 chr3D 85.240 813 103 11 4504 5307 604017281 604016477 0.000000e+00 821.0
17 TraesCS3D01G520400 chr3D 87.683 341 27 10 4250 4585 604129162 604128832 5.030000e-102 383.0
18 TraesCS3D01G520400 chr3D 86.250 240 13 8 7798 8035 604009751 604009530 8.900000e-60 243.0
19 TraesCS3D01G520400 chr3D 83.598 189 27 2 4401 4585 604015203 604015015 3.290000e-39 174.0
20 TraesCS3D01G520400 chr3D 87.143 140 13 4 3321 3459 604129830 604129695 4.290000e-33 154.0
21 TraesCS3D01G520400 chr3D 93.137 102 7 0 3863 3964 604129286 604129185 5.550000e-32 150.0
22 TraesCS3D01G520400 chr3D 74.334 413 74 19 4277 4671 602799428 602799030 7.180000e-31 147.0
23 TraesCS3D01G520400 chr3D 83.750 160 8 6 3646 3787 604129464 604129305 1.550000e-27 135.0
24 TraesCS3D01G520400 chr3D 88.406 69 7 1 3885 3952 603940345 603940413 2.050000e-11 82.4
25 TraesCS3D01G520400 chr3D 94.340 53 3 0 3902 3954 604007722 604007670 2.050000e-11 82.4
26 TraesCS3D01G520400 chr3D 85.000 80 8 2 322 400 602801345 602801269 2.660000e-10 78.7
27 TraesCS3D01G520400 chr3D 85.000 80 8 2 3888 3964 602804911 602804833 2.660000e-10 78.7
28 TraesCS3D01G520400 chr3D 97.500 40 1 0 422 461 604124590 604124551 1.600000e-07 69.4
29 TraesCS3D01G520400 chr3D 90.385 52 4 1 336 386 604007722 604007671 5.750000e-07 67.6
30 TraesCS3D01G520400 chr3D 88.462 52 6 0 3974 4025 563445324 563445375 7.440000e-06 63.9
31 TraesCS3D01G520400 chr3D 100.000 29 0 0 433 461 602799428 602799400 4.000000e-03 54.7
32 TraesCS3D01G520400 chr3A 95.380 4026 126 17 10 3998 733037982 733041984 0.000000e+00 6349.0
33 TraesCS3D01G520400 chr3A 97.085 3122 63 5 4250 7371 733042026 733045119 0.000000e+00 5236.0
34 TraesCS3D01G520400 chr3A 90.758 2283 176 23 5756 8035 733624006 733621756 0.000000e+00 3014.0
35 TraesCS3D01G520400 chr3A 86.457 2097 211 33 1252 3318 733436202 733438255 0.000000e+00 2231.0
36 TraesCS3D01G520400 chr3A 85.864 2094 239 28 1252 3310 733333088 733335159 0.000000e+00 2174.0
37 TraesCS3D01G520400 chr3A 85.961 2087 224 41 1252 3310 733465326 733467371 0.000000e+00 2167.0
38 TraesCS3D01G520400 chr3A 86.264 2002 202 29 1252 3224 733411407 733413364 0.000000e+00 2106.0
39 TraesCS3D01G520400 chr3A 84.041 1767 250 24 4504 6258 733564465 733562719 0.000000e+00 1672.0
40 TraesCS3D01G520400 chr3A 81.262 2156 318 45 5745 7854 733638224 733636109 0.000000e+00 1664.0
41 TraesCS3D01G520400 chr3A 85.588 1582 173 16 1759 3318 733185893 733187441 0.000000e+00 1607.0
42 TraesCS3D01G520400 chr3A 83.248 1761 239 28 5983 7706 733726004 733724263 0.000000e+00 1567.0
43 TraesCS3D01G520400 chr3A 82.511 1784 262 24 1252 3004 733726070 733724306 0.000000e+00 1520.0
44 TraesCS3D01G520400 chr3A 86.572 1415 143 23 6639 8035 733532477 733531092 0.000000e+00 1517.0
45 TraesCS3D01G520400 chr3A 81.738 1818 267 37 1252 3027 733860348 733858554 0.000000e+00 1458.0
46 TraesCS3D01G520400 chr3A 94.295 929 33 10 7389 8315 733045351 733046261 0.000000e+00 1404.0
47 TraesCS3D01G520400 chr3A 81.604 1783 250 39 5983 7711 733860282 733858524 0.000000e+00 1404.0
48 TraesCS3D01G520400 chr3A 82.955 1584 221 24 6157 7711 733917436 733915873 0.000000e+00 1384.0
49 TraesCS3D01G520400 chr3A 83.847 1492 195 21 4774 6258 733568547 733567095 0.000000e+00 1378.0
50 TraesCS3D01G520400 chr3A 86.314 1286 150 22 4515 5792 733539032 733537765 0.000000e+00 1376.0
51 TraesCS3D01G520400 chr3A 81.409 1732 258 34 5983 7678 733039284 733040987 0.000000e+00 1356.0
52 TraesCS3D01G520400 chr3A 80.705 1731 266 41 5983 7678 733465392 733467089 0.000000e+00 1284.0
53 TraesCS3D01G520400 chr3A 80.503 1749 264 40 5983 7678 733333154 733334878 0.000000e+00 1269.0
54 TraesCS3D01G520400 chr3A 80.301 1726 291 23 5983 7678 733411473 733413179 0.000000e+00 1258.0
55 TraesCS3D01G520400 chr3A 80.289 1730 276 41 1321 3022 733637995 733636303 0.000000e+00 1245.0
56 TraesCS3D01G520400 chr3A 81.113 1599 237 28 5983 7537 733732447 733730870 0.000000e+00 1219.0
57 TraesCS3D01G520400 chr3A 79.266 1635 255 49 5983 7578 733709488 733707899 0.000000e+00 1064.0
58 TraesCS3D01G520400 chr3A 85.106 987 99 31 4250 5219 733627454 733626499 0.000000e+00 965.0
59 TraesCS3D01G520400 chr3A 86.993 592 61 11 4504 5086 733576814 733576230 0.000000e+00 652.0
60 TraesCS3D01G520400 chr3A 87.230 509 61 4 5776 6282 733576222 733575716 2.150000e-160 577.0
61 TraesCS3D01G520400 chr3A 84.888 536 69 8 4504 5031 733574954 733574423 1.700000e-146 531.0
62 TraesCS3D01G520400 chr3A 86.667 390 46 6 5872 6258 733570893 733570507 2.290000e-115 427.0
63 TraesCS3D01G520400 chr3A 80.247 567 97 13 7123 7679 733518891 733518330 6.410000e-111 412.0
64 TraesCS3D01G520400 chr3A 95.023 221 10 1 4027 4246 84188167 84187947 6.600000e-91 346.0
65 TraesCS3D01G520400 chr3A 79.879 497 76 11 7193 7678 733715331 733714848 8.530000e-90 342.0
66 TraesCS3D01G520400 chr3A 84.444 315 47 2 5970 6284 733536434 733536122 8.650000e-80 309.0
67 TraesCS3D01G520400 chr3A 83.333 324 45 4 7388 7705 733475428 733475748 3.130000e-74 291.0
68 TraesCS3D01G520400 chr3A 83.571 280 40 3 4504 4779 733569749 733569472 3.180000e-64 257.0
69 TraesCS3D01G520400 chr3A 93.143 175 9 2 8145 8318 733621687 733621515 4.110000e-63 254.0
70 TraesCS3D01G520400 chr3A 80.162 247 29 10 3473 3719 733607050 733606824 5.510000e-37 167.0
71 TraesCS3D01G520400 chr3A 95.098 102 5 0 3863 3964 733627577 733627476 2.560000e-35 161.0
72 TraesCS3D01G520400 chr3A 80.729 192 29 5 4400 4585 733563044 733562855 9.290000e-30 143.0
73 TraesCS3D01G520400 chr3A 81.395 172 16 10 3632 3787 733627767 733627596 9.350000e-25 126.0
74 TraesCS3D01G520400 chr3A 76.786 224 41 6 5935 6158 733042169 733042381 2.020000e-21 115.0
75 TraesCS3D01G520400 chr3A 88.043 92 8 3 8313 8403 733187660 733187749 1.220000e-18 106.0
76 TraesCS3D01G520400 chr3A 86.250 80 7 2 322 400 733041874 733041950 5.710000e-12 84.2
77 TraesCS3D01G520400 chr3A 84.337 83 9 2 3885 3964 733038301 733038382 2.660000e-10 78.7
78 TraesCS3D01G520400 chr3A 92.308 52 4 0 3903 3954 733521516 733521465 3.440000e-09 75.0
79 TraesCS3D01G520400 chr3A 93.617 47 1 1 341 385 733410123 733410169 1.600000e-07 69.4
80 TraesCS3D01G520400 chr3A 97.222 36 1 0 214 249 733038091 733038126 2.680000e-05 62.1
81 TraesCS3D01G520400 chr3A 100.000 32 0 0 123 154 733038190 733038221 9.620000e-05 60.2
82 TraesCS3D01G520400 chr3A 100.000 29 0 0 433 461 733043553 733043581 4.000000e-03 54.7
83 TraesCS3D01G520400 chr3B 98.392 3607 51 6 4609 8211 810951126 810954729 0.000000e+00 6333.0
84 TraesCS3D01G520400 chr3B 95.815 2891 70 18 1060 3912 810947817 810950694 0.000000e+00 4621.0
85 TraesCS3D01G520400 chr3B 89.583 2832 230 28 5219 8035 811113746 811110965 0.000000e+00 3535.0
86 TraesCS3D01G520400 chr3B 87.697 2032 198 28 1253 3259 810970302 810972306 0.000000e+00 2320.0
87 TraesCS3D01G520400 chr3B 83.418 1779 254 18 1251 3004 811141397 811139635 0.000000e+00 1613.0
88 TraesCS3D01G520400 chr3B 82.023 1552 235 28 6150 7678 811040932 811042462 0.000000e+00 1280.0
89 TraesCS3D01G520400 chr3B 81.163 1582 252 26 1318 2882 811135487 811133935 0.000000e+00 1229.0
90 TraesCS3D01G520400 chr3B 84.024 989 94 35 4250 5219 811116862 811115919 0.000000e+00 893.0
91 TraesCS3D01G520400 chr3B 88.492 504 47 3 548 1050 766629448 766628955 4.590000e-167 599.0
92 TraesCS3D01G520400 chr3B 92.663 368 9 6 443 807 810947465 810947817 1.710000e-141 514.0
93 TraesCS3D01G520400 chr3B 97.807 228 4 1 4025 4251 70867974 70868201 8.350000e-105 392.0
94 TraesCS3D01G520400 chr3B 92.000 275 5 1 4354 4628 810950701 810950958 3.910000e-98 370.0
95 TraesCS3D01G520400 chr3B 95.045 222 10 1 4025 4245 39090860 39090639 1.830000e-91 348.0
96 TraesCS3D01G520400 chr3B 96.133 181 5 1 1 181 810946891 810947069 2.420000e-75 294.0
97 TraesCS3D01G520400 chr3B 87.356 261 14 7 197 447 810947038 810947289 1.890000e-71 281.0
98 TraesCS3D01G520400 chr3B 93.103 174 9 2 8146 8318 811110894 811110723 1.480000e-62 252.0
99 TraesCS3D01G520400 chr3B 88.571 140 13 2 3321 3459 811119297 811119160 5.510000e-37 167.0
100 TraesCS3D01G520400 chr3B 95.098 102 5 0 3863 3964 811116986 811116885 2.560000e-35 161.0
101 TraesCS3D01G520400 chr3B 83.908 174 10 6 3632 3787 811117178 811117005 5.550000e-32 150.0
102 TraesCS3D01G520400 chr3B 74.272 412 76 19 4277 4671 810952323 810952721 7.180000e-31 147.0
103 TraesCS3D01G520400 chr3B 97.222 36 1 0 214 249 810947007 810947042 2.680000e-05 62.1
104 TraesCS3D01G520400 chr3B 100.000 29 0 0 433 461 810952323 810952351 4.000000e-03 54.7
105 TraesCS3D01G520400 chrUn 81.585 1754 260 28 5983 7708 42260129 42261847 0.000000e+00 1391.0
106 TraesCS3D01G520400 chr5A 91.079 695 54 6 507 1197 559783342 559782652 0.000000e+00 933.0
107 TraesCS3D01G520400 chr5A 98.238 227 3 1 4026 4251 12208372 12208598 6.460000e-106 396.0
108 TraesCS3D01G520400 chr5A 96.380 221 7 1 4027 4246 626254970 626254750 6.550000e-96 363.0
109 TraesCS3D01G520400 chr1D 87.879 693 81 3 504 1196 75527364 75528053 0.000000e+00 811.0
110 TraesCS3D01G520400 chr1D 96.759 216 6 1 4037 4251 166835756 166835971 8.470000e-95 359.0
111 TraesCS3D01G520400 chr1B 87.101 721 82 6 478 1197 675255057 675254347 0.000000e+00 806.0
112 TraesCS3D01G520400 chr1B 73.092 747 159 30 473 1197 374854799 374854073 2.490000e-55 228.0
113 TraesCS3D01G520400 chr7B 83.542 638 103 2 559 1196 733178440 733179075 5.930000e-166 595.0
114 TraesCS3D01G520400 chr7A 84.245 603 95 0 559 1161 30923335 30923937 9.930000e-164 588.0
115 TraesCS3D01G520400 chr2A 87.143 420 46 6 473 891 92518921 92519333 3.750000e-128 470.0
116 TraesCS3D01G520400 chr2A 90.429 303 29 0 895 1197 92626589 92626891 4.990000e-107 399.0
117 TraesCS3D01G520400 chr2A 88.000 50 6 0 3967 4016 763018389 763018340 9.620000e-05 60.2
118 TraesCS3D01G520400 chr6D 81.466 464 85 1 735 1197 294960108 294959645 6.500000e-101 379.0
119 TraesCS3D01G520400 chr6D 80.306 457 79 8 741 1197 295041731 295041286 1.430000e-87 335.0
120 TraesCS3D01G520400 chr7D 96.744 215 6 1 4026 4239 53265613 53265827 3.050000e-94 357.0
121 TraesCS3D01G520400 chr4B 94.737 228 10 2 4026 4252 4742674 4742448 3.940000e-93 353.0
122 TraesCS3D01G520400 chr4B 82.270 141 21 3 4671 4809 440930346 440930484 1.570000e-22 119.0
123 TraesCS3D01G520400 chr5D 94.619 223 11 1 4025 4246 230418151 230418373 2.370000e-90 344.0
124 TraesCS3D01G520400 chr5D 89.583 96 10 0 4712 4807 302163163 302163068 1.210000e-23 122.0
125 TraesCS3D01G520400 chr5D 100.000 28 0 0 4803 4830 9388264 9388237 1.600000e-02 52.8
126 TraesCS3D01G520400 chr5B 82.500 120 15 4 4667 4781 527013866 527013984 5.670000e-17 100.0
127 TraesCS3D01G520400 chr4A 86.667 75 10 0 5074 5148 584417683 584417757 5.710000e-12 84.2
128 TraesCS3D01G520400 chr4A 85.333 75 11 0 5074 5148 603153186 603153260 2.660000e-10 78.7
129 TraesCS3D01G520400 chr6A 81.111 90 11 5 4673 4758 127871456 127871369 5.750000e-07 67.6
130 TraesCS3D01G520400 chr2D 95.000 40 2 0 3977 4016 586805878 586805839 7.440000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G520400 chr3D 602796358 602805232 8874 True 16390.000000 16390 100.000000 1 8875 1 chr3D.!!$R2 8874
1 TraesCS3D01G520400 chr3D 602779817 602781668 1851 True 2146.000000 2146 87.828000 1252 3085 1 chr3D.!!$R1 1833
2 TraesCS3D01G520400 chr3D 604122548 604125132 2584 True 1730.200000 3391 93.860000 422 7854 2 chr3D.!!$R8 7432
3 TraesCS3D01G520400 chr3D 604251250 604253012 1762 True 1596.000000 1596 83.240000 1252 3004 1 chr3D.!!$R4 1752
4 TraesCS3D01G520400 chr3D 604142092 604143816 1724 True 1552.000000 1552 83.210000 5982 7706 1 chr3D.!!$R3 1724
5 TraesCS3D01G520400 chr3D 604135855 604137805 1950 True 1547.500000 1746 82.236000 1321 7705 2 chr3D.!!$R10 6384
6 TraesCS3D01G520400 chr3D 604257543 604259200 1657 True 1354.000000 1354 81.721000 6056 7711 1 chr3D.!!$R5 1655
7 TraesCS3D01G520400 chr3D 603940345 603945469 5124 False 1167.466667 2117 85.204333 1252 7678 3 chr3D.!!$F2 6426
8 TraesCS3D01G520400 chr3D 604007670 604027583 19913 True 986.272727 1901 86.986818 336 8035 11 chr3D.!!$R7 7699
9 TraesCS3D01G520400 chr3D 604128832 604129830 998 True 205.500000 383 87.928250 3321 4585 4 chr3D.!!$R9 1264
10 TraesCS3D01G520400 chr3A 733436202 733438255 2053 False 2231.000000 2231 86.457000 1252 3318 1 chr3A.!!$F1 2066
11 TraesCS3D01G520400 chr3A 733465326 733467371 2045 False 1725.500000 2167 83.333000 1252 7678 2 chr3A.!!$F7 6426
12 TraesCS3D01G520400 chr3A 733333088 733335159 2071 False 1721.500000 2174 83.183500 1252 7678 2 chr3A.!!$F5 6426
13 TraesCS3D01G520400 chr3A 733724263 733726070 1807 True 1543.500000 1567 82.879500 1252 7706 2 chr3A.!!$R13 6454
14 TraesCS3D01G520400 chr3A 733037982 733046261 8279 False 1479.990000 6349 91.276400 10 8315 10 chr3A.!!$F3 8305
15 TraesCS3D01G520400 chr3A 733636109 733638224 2115 True 1454.500000 1664 80.775500 1321 7854 2 chr3A.!!$R12 6533
16 TraesCS3D01G520400 chr3A 733858524 733860348 1824 True 1431.000000 1458 81.671000 1252 7711 2 chr3A.!!$R14 6459
17 TraesCS3D01G520400 chr3A 733915873 733917436 1563 True 1384.000000 1384 82.955000 6157 7711 1 chr3A.!!$R6 1554
18 TraesCS3D01G520400 chr3A 733730870 733732447 1577 True 1219.000000 1219 81.113000 5983 7537 1 chr3A.!!$R5 1554
19 TraesCS3D01G520400 chr3A 733410123 733413364 3241 False 1144.466667 2106 86.727333 341 7678 3 chr3A.!!$F6 7337
20 TraesCS3D01G520400 chr3A 733531092 733539032 7940 True 1067.333333 1517 85.776667 4515 8035 3 chr3A.!!$R8 3520
21 TraesCS3D01G520400 chr3A 733707899 733709488 1589 True 1064.000000 1064 79.266000 5983 7578 1 chr3A.!!$R3 1595
22 TraesCS3D01G520400 chr3A 733562719 733564465 1746 True 907.500000 1672 82.385000 4400 6258 2 chr3A.!!$R9 1858
23 TraesCS3D01G520400 chr3A 733621515 733627767 6252 True 904.000000 3014 89.100000 3632 8318 5 chr3A.!!$R11 4686
24 TraesCS3D01G520400 chr3A 733185893 733187749 1856 False 856.500000 1607 86.815500 1759 8403 2 chr3A.!!$F4 6644
25 TraesCS3D01G520400 chr3A 733567095 733576814 9719 True 637.000000 1378 85.532667 4504 6282 6 chr3A.!!$R10 1778
26 TraesCS3D01G520400 chr3A 733518330 733521516 3186 True 243.500000 412 86.277500 3903 7679 2 chr3A.!!$R7 3776
27 TraesCS3D01G520400 chr3B 810970302 810972306 2004 False 2320.000000 2320 87.697000 1253 3259 1 chr3B.!!$F2 2006
28 TraesCS3D01G520400 chr3B 811139635 811141397 1762 True 1613.000000 1613 83.418000 1251 3004 1 chr3B.!!$R4 1753
29 TraesCS3D01G520400 chr3B 810946891 810954729 7838 False 1408.533333 6333 92.650333 1 8211 9 chr3B.!!$F4 8210
30 TraesCS3D01G520400 chr3B 811040932 811042462 1530 False 1280.000000 1280 82.023000 6150 7678 1 chr3B.!!$F3 1528
31 TraesCS3D01G520400 chr3B 811133935 811135487 1552 True 1229.000000 1229 81.163000 1318 2882 1 chr3B.!!$R3 1564
32 TraesCS3D01G520400 chr3B 811110723 811119297 8574 True 859.666667 3535 89.047833 3321 8318 6 chr3B.!!$R5 4997
33 TraesCS3D01G520400 chrUn 42260129 42261847 1718 False 1391.000000 1391 81.585000 5983 7708 1 chrUn.!!$F1 1725
34 TraesCS3D01G520400 chr5A 559782652 559783342 690 True 933.000000 933 91.079000 507 1197 1 chr5A.!!$R1 690
35 TraesCS3D01G520400 chr1D 75527364 75528053 689 False 811.000000 811 87.879000 504 1196 1 chr1D.!!$F1 692
36 TraesCS3D01G520400 chr1B 675254347 675255057 710 True 806.000000 806 87.101000 478 1197 1 chr1B.!!$R2 719
37 TraesCS3D01G520400 chr1B 374854073 374854799 726 True 228.000000 228 73.092000 473 1197 1 chr1B.!!$R1 724
38 TraesCS3D01G520400 chr7B 733178440 733179075 635 False 595.000000 595 83.542000 559 1196 1 chr7B.!!$F1 637
39 TraesCS3D01G520400 chr7A 30923335 30923937 602 False 588.000000 588 84.245000 559 1161 1 chr7A.!!$F1 602

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
639 858 0.818296 GCGGTGAGACCATAGAGTGT 59.182 55.000 0.00 0.00 38.47 3.55 F
1883 3803 0.249868 GTAGGTGGATGCGCATGCTA 60.250 55.000 36.38 22.81 43.34 3.49 F
2258 4178 0.037882 CTGCCGTTCTCTCTCTTGCA 60.038 55.000 0.00 0.00 0.00 4.08 F
4096 7853 0.034089 AGGGTTGTGATAGGCTTGGC 60.034 55.000 0.00 0.00 0.00 4.52 F
4188 7945 0.104409 ACCTCCTGGGAAGTCCTTGT 60.104 55.000 0.00 0.00 38.76 3.16 F
4189 7946 0.326264 CCTCCTGGGAAGTCCTTGTG 59.674 60.000 0.00 0.00 37.23 3.33 F
5424 17779 0.395724 TCTGTCCTCAGCGCTCCATA 60.396 55.000 7.13 0.00 41.10 2.74 F
6192 26085 2.484889 GCTAATTTAGGCTCCCTGTCG 58.515 52.381 5.61 0.00 34.61 4.35 F
7322 30649 0.914644 CCAGCAAATCCTCTCCCTCA 59.085 55.000 0.00 0.00 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2239 4159 0.037882 TGCAAGAGAGAGAACGGCAG 60.038 55.000 0.00 0.0 0.00 4.85 R
3240 5160 0.247736 AAGGACTAGCTGAACTGGCG 59.752 55.000 0.00 0.0 34.52 5.69 R
4158 7915 0.031111 CCAGGAGGTCACCCATCCTA 60.031 60.000 4.27 0.0 36.69 2.94 R
4901 13709 2.313717 CTGGATTGCACGCGGTGATG 62.314 60.000 12.47 0.0 35.23 3.07 R
5160 14956 3.194329 GCTTGAATAGCCAGCCTTCTTTT 59.806 43.478 4.73 0.0 44.48 2.27 R
5933 21071 7.683578 TCAGGATGCAATAGCTTATAGTCATT 58.316 34.615 0.00 0.0 42.74 2.57 R
7287 30608 0.535335 CTGGCATACGTACCCACACT 59.465 55.000 11.63 0.0 0.00 3.55 R
7786 35845 0.526739 TGTCCTCGAACACACACACG 60.527 55.000 0.00 0.0 0.00 4.49 R
8852 42006 0.105593 CTCCATGAGGGACATCCACG 59.894 60.000 0.00 0.0 42.15 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
108 109 3.193479 GGCTTCCCGTTTCATGAGATTTT 59.807 43.478 0.00 0.00 0.00 1.82
130 131 3.829886 TCGCACAGATTGTTCAATTCC 57.170 42.857 0.00 0.00 0.00 3.01
158 159 2.957402 TCAGATTGCCCCATGTATCC 57.043 50.000 0.00 0.00 0.00 2.59
163 164 2.662535 TTGCCCCATGTATCCTGATG 57.337 50.000 0.00 0.00 0.00 3.07
165 166 1.143481 TGCCCCATGTATCCTGATGTG 59.857 52.381 0.00 0.00 0.00 3.21
181 182 3.435327 TGATGTGTACCGTTCAATTCTGC 59.565 43.478 0.00 0.00 0.00 4.26
264 275 4.805609 GCCCCATGAGGACTAATGAGATTC 60.806 50.000 0.00 0.00 38.24 2.52
282 293 6.881065 TGAGATTCTTTTGTGACAATAGGAGG 59.119 38.462 14.27 0.00 0.00 4.30
306 317 8.800332 AGGTTATAATACTGTATGTTCTACGGG 58.200 37.037 0.22 0.00 0.00 5.28
409 441 8.992073 GTAGTACTACTCTGTTATTCTCTAGCC 58.008 40.741 23.17 0.00 33.45 3.93
503 715 1.338890 TGAAACTGTCACCGTGGGGA 61.339 55.000 0.00 0.00 36.97 4.81
639 858 0.818296 GCGGTGAGACCATAGAGTGT 59.182 55.000 0.00 0.00 38.47 3.55
939 1186 2.428890 GGAGAGTCGATGATGGTCTTGT 59.571 50.000 0.00 0.00 0.00 3.16
1546 3466 1.915489 TCTTCTGGAATTGCTAGGCCA 59.085 47.619 5.01 0.00 0.00 5.36
1652 3572 2.168728 AGAGTTAAAGGGCGACATCCTC 59.831 50.000 0.00 0.00 32.59 3.71
1659 3579 2.722201 GGCGACATCCTCTCCCGTT 61.722 63.158 0.00 0.00 0.00 4.44
1751 3671 3.354089 AAAATATTTCTGCGCGATGGG 57.646 42.857 12.10 0.00 0.00 4.00
1757 3677 0.732571 TTCTGCGCGATGGGAATTTC 59.267 50.000 12.10 0.00 0.00 2.17
1820 3740 2.296471 ACTCCACAACGGAACTGTAGAG 59.704 50.000 0.00 0.00 45.75 2.43
1883 3803 0.249868 GTAGGTGGATGCGCATGCTA 60.250 55.000 36.38 22.81 43.34 3.49
1891 3811 2.158986 GGATGCGCATGCTATCTAGGAT 60.159 50.000 31.63 11.77 43.34 3.24
1893 3813 4.442052 GGATGCGCATGCTATCTAGGATAA 60.442 45.833 31.63 0.00 43.34 1.75
1894 3814 4.115401 TGCGCATGCTATCTAGGATAAG 57.885 45.455 17.13 0.00 43.34 1.73
2078 3998 7.230747 TGAAAAATTTCTCCTCCACAGACATA 58.769 34.615 7.36 0.00 38.02 2.29
2099 4019 3.866651 AGACATCCAAAATCTGGTCTCG 58.133 45.455 0.00 0.00 46.51 4.04
2105 4025 3.071023 TCCAAAATCTGGTCTCGTTCTGT 59.929 43.478 0.00 0.00 46.51 3.41
2119 4039 2.485426 CGTTCTGTCCCGTACTGAGTTA 59.515 50.000 0.00 0.00 37.36 2.24
2182 4102 4.511826 CGTTCAAGCTCCTAAACTGAAACT 59.488 41.667 0.00 0.00 0.00 2.66
2213 4133 5.163457 TGTTTTTGGGGACTTTGAAGACATC 60.163 40.000 0.00 0.00 0.00 3.06
2239 4159 1.332195 GATGCCCCTAATTTGGAGGC 58.668 55.000 22.41 22.41 41.07 4.70
2240 4160 0.936691 ATGCCCCTAATTTGGAGGCT 59.063 50.000 26.23 15.85 41.18 4.58
2244 4164 1.103398 CCCTAATTTGGAGGCTGCCG 61.103 60.000 13.96 0.00 32.18 5.69
2258 4178 0.037882 CTGCCGTTCTCTCTCTTGCA 60.038 55.000 0.00 0.00 0.00 4.08
2276 4196 2.622470 TGCACATGAAGCTAAAGCACAA 59.378 40.909 14.16 0.00 45.16 3.33
2302 4222 1.339291 TGTTCCAATTGCGCATGACAA 59.661 42.857 12.75 0.00 0.00 3.18
2381 4301 3.947910 AGTGGCATTTTCATGAAGGTG 57.052 42.857 8.41 12.09 31.07 4.00
2426 4346 0.924823 ATGGCCTTCTTCTGCATCCT 59.075 50.000 3.32 0.00 0.00 3.24
2606 4526 1.893062 GCTGTTTCAGAATGCCCCC 59.107 57.895 0.66 0.00 34.76 5.40
2661 4581 3.388913 CCTCCAGTAAATCCTCTCCCTT 58.611 50.000 0.00 0.00 0.00 3.95
2669 4589 2.470057 ATCCTCTCCCTTCCTCAGTC 57.530 55.000 0.00 0.00 0.00 3.51
2672 4592 2.045047 TCCTCTCCCTTCCTCAGTCATT 59.955 50.000 0.00 0.00 0.00 2.57
2682 4602 3.548770 TCCTCAGTCATTCAATCCATGC 58.451 45.455 0.00 0.00 0.00 4.06
2691 4611 7.012989 CAGTCATTCAATCCATGCTCATTCTTA 59.987 37.037 0.00 0.00 0.00 2.10
2702 4622 8.742777 TCCATGCTCATTCTTATATTTTATGGC 58.257 33.333 0.00 0.00 32.37 4.40
2703 4623 8.525316 CCATGCTCATTCTTATATTTTATGGCA 58.475 33.333 0.00 0.00 31.75 4.92
2706 4626 9.524496 TGCTCATTCTTATATTTTATGGCATCT 57.476 29.630 1.65 0.00 0.00 2.90
2722 4642 9.625747 TTATGGCATCTAATTAATGAGTTGTGA 57.374 29.630 1.65 1.52 0.00 3.58
2751 4671 3.130280 TGCAGAGTCAATCTTTGAGCA 57.870 42.857 0.00 0.00 41.01 4.26
2755 4675 4.672024 GCAGAGTCAATCTTTGAGCACATG 60.672 45.833 0.00 0.00 41.01 3.21
2779 4699 0.883814 CAGGATCAGGCGAGCATTCC 60.884 60.000 0.00 0.00 0.00 3.01
2831 4751 2.061773 CTCGTAACAGCCAGTGTGAAG 58.938 52.381 0.00 0.00 40.26 3.02
2833 4753 1.523758 GTAACAGCCAGTGTGAAGGG 58.476 55.000 0.00 0.00 40.26 3.95
2843 4763 0.185175 GTGTGAAGGGTTTCAGGGGT 59.815 55.000 0.00 0.00 43.66 4.95
2844 4764 0.184933 TGTGAAGGGTTTCAGGGGTG 59.815 55.000 0.00 0.00 43.66 4.61
3002 4922 1.427368 AGGGCCAAGGTCATTGTTACA 59.573 47.619 6.18 0.00 37.17 2.41
3048 4968 0.319728 CTACAGAGCATCCCCCATCG 59.680 60.000 0.00 0.00 33.66 3.84
3138 5058 6.070829 CGGTTATATATGTGTGCATTTGACG 58.929 40.000 0.00 0.00 36.58 4.35
3148 5068 2.277057 GTGCATTTGACGCAATTCATCG 59.723 45.455 0.00 0.00 41.97 3.84
3167 5087 1.136500 CGGGCAGAGGGAGTACTTAAC 59.864 57.143 0.00 0.00 0.00 2.01
3206 5126 1.269723 GTTTTCCTTTCTTGAGCCGGG 59.730 52.381 2.18 0.00 0.00 5.73
3223 5143 2.591715 GGACACACAAGCCGCTGT 60.592 61.111 0.00 0.00 0.00 4.40
3228 5148 3.289834 CACAAGCCGCTGTTGCCT 61.290 61.111 0.00 0.00 35.36 4.75
3240 5160 1.000938 CTGTTGCCTTTCCTCAACTGC 60.001 52.381 6.65 0.00 42.11 4.40
3358 5287 4.418013 TGCGTGTACCAATTCATGAAAG 57.582 40.909 13.09 8.19 0.00 2.62
3422 5351 9.241317 CAATTCATGAGTATTCAGTATTTTGCC 57.759 33.333 0.00 0.00 36.61 4.52
3436 5365 8.584157 TCAGTATTTTGCCAAAAGATTATGTGT 58.416 29.630 8.75 0.00 33.22 3.72
3494 5424 8.603242 AGTTTATGTGCGTATATCTTTTAGGG 57.397 34.615 0.00 0.00 0.00 3.53
3634 7373 2.115266 CCCAGGGTTTCCAAGCGT 59.885 61.111 0.00 0.00 34.83 5.07
3842 7599 2.107950 TGGTTAAGTTCATGAGCCCG 57.892 50.000 5.87 0.00 0.00 6.13
3905 7662 5.174761 CGATTCTAGTTGATCTTACTGCTGC 59.825 44.000 10.23 0.00 0.00 5.25
3974 7731 7.785033 AGTACTACTCTGTTACCTACTCTCTC 58.215 42.308 0.00 0.00 0.00 3.20
3992 7749 6.268847 ACTCTCTCAGTCCTGAATTACTTGTT 59.731 38.462 0.00 0.00 39.39 2.83
3995 7752 8.647796 TCTCTCAGTCCTGAATTACTTGTTTTA 58.352 33.333 0.00 0.00 39.39 1.52
3996 7753 9.442047 CTCTCAGTCCTGAATTACTTGTTTTAT 57.558 33.333 0.00 0.00 39.39 1.40
4030 7787 2.673833 CGGATGCCGTATCTAAACTCC 58.326 52.381 0.00 0.00 42.73 3.85
4031 7788 2.673833 GGATGCCGTATCTAAACTCCG 58.326 52.381 0.00 0.00 36.03 4.63
4032 7789 2.059541 GATGCCGTATCTAAACTCCGC 58.940 52.381 0.00 0.00 32.83 5.54
4033 7790 0.103572 TGCCGTATCTAAACTCCGCC 59.896 55.000 0.00 0.00 0.00 6.13
4036 7793 2.230750 GCCGTATCTAAACTCCGCCTAT 59.769 50.000 0.00 0.00 0.00 2.57
4037 7794 3.834610 CCGTATCTAAACTCCGCCTATG 58.165 50.000 0.00 0.00 0.00 2.23
4038 7795 3.255149 CCGTATCTAAACTCCGCCTATGT 59.745 47.826 0.00 0.00 0.00 2.29
4039 7796 4.474113 CGTATCTAAACTCCGCCTATGTC 58.526 47.826 0.00 0.00 0.00 3.06
4042 7799 4.650754 TCTAAACTCCGCCTATGTCTTC 57.349 45.455 0.00 0.00 0.00 2.87
4044 7801 5.443283 TCTAAACTCCGCCTATGTCTTCTA 58.557 41.667 0.00 0.00 0.00 2.10
4045 7802 4.657436 AAACTCCGCCTATGTCTTCTAG 57.343 45.455 0.00 0.00 0.00 2.43
4046 7803 2.588620 ACTCCGCCTATGTCTTCTAGG 58.411 52.381 0.00 0.00 39.06 3.02
4062 7819 2.902343 GGCATAGCCGGTCCAAGC 60.902 66.667 1.90 0.98 39.62 4.01
4063 7820 2.902343 GCATAGCCGGTCCAAGCC 60.902 66.667 1.90 0.00 0.00 4.35
4064 7821 2.203209 CATAGCCGGTCCAAGCCC 60.203 66.667 1.90 0.00 0.00 5.19
4065 7822 3.861797 ATAGCCGGTCCAAGCCCG 61.862 66.667 1.90 0.00 45.07 6.13
4070 7827 3.708544 CGGTCCAAGCCCGGGTAA 61.709 66.667 24.63 0.00 41.78 2.85
4071 7828 2.758434 GGTCCAAGCCCGGGTAAA 59.242 61.111 24.63 0.10 0.00 2.01
4072 7829 1.378119 GGTCCAAGCCCGGGTAAAG 60.378 63.158 24.63 9.46 0.00 1.85
4073 7830 1.378119 GTCCAAGCCCGGGTAAAGG 60.378 63.158 24.63 18.79 0.00 3.11
4074 7831 1.539372 TCCAAGCCCGGGTAAAGGA 60.539 57.895 24.63 20.80 0.00 3.36
4075 7832 1.077716 CCAAGCCCGGGTAAAGGAG 60.078 63.158 24.63 5.31 0.00 3.69
4076 7833 1.077716 CAAGCCCGGGTAAAGGAGG 60.078 63.158 24.63 0.00 0.00 4.30
4077 7834 1.229723 AAGCCCGGGTAAAGGAGGA 60.230 57.895 24.63 0.00 0.00 3.71
4078 7835 1.272554 AAGCCCGGGTAAAGGAGGAG 61.273 60.000 24.63 0.00 0.00 3.69
4079 7836 2.743179 GCCCGGGTAAAGGAGGAGG 61.743 68.421 24.63 0.00 0.00 4.30
4080 7837 2.070650 CCCGGGTAAAGGAGGAGGG 61.071 68.421 14.18 0.00 0.00 4.30
4081 7838 1.306739 CCGGGTAAAGGAGGAGGGT 60.307 63.158 0.00 0.00 0.00 4.34
4082 7839 0.912968 CCGGGTAAAGGAGGAGGGTT 60.913 60.000 0.00 0.00 0.00 4.11
4083 7840 0.252197 CGGGTAAAGGAGGAGGGTTG 59.748 60.000 0.00 0.00 0.00 3.77
4084 7841 1.369403 GGGTAAAGGAGGAGGGTTGT 58.631 55.000 0.00 0.00 0.00 3.32
4085 7842 1.004394 GGGTAAAGGAGGAGGGTTGTG 59.996 57.143 0.00 0.00 0.00 3.33
4086 7843 1.982958 GGTAAAGGAGGAGGGTTGTGA 59.017 52.381 0.00 0.00 0.00 3.58
4087 7844 2.576648 GGTAAAGGAGGAGGGTTGTGAT 59.423 50.000 0.00 0.00 0.00 3.06
4088 7845 3.778629 GGTAAAGGAGGAGGGTTGTGATA 59.221 47.826 0.00 0.00 0.00 2.15
4089 7846 4.141688 GGTAAAGGAGGAGGGTTGTGATAG 60.142 50.000 0.00 0.00 0.00 2.08
4090 7847 2.182516 AGGAGGAGGGTTGTGATAGG 57.817 55.000 0.00 0.00 0.00 2.57
4091 7848 0.470341 GGAGGAGGGTTGTGATAGGC 59.530 60.000 0.00 0.00 0.00 3.93
4092 7849 1.501582 GAGGAGGGTTGTGATAGGCT 58.498 55.000 0.00 0.00 0.00 4.58
4093 7850 1.840635 GAGGAGGGTTGTGATAGGCTT 59.159 52.381 0.00 0.00 0.00 4.35
4094 7851 1.561542 AGGAGGGTTGTGATAGGCTTG 59.438 52.381 0.00 0.00 0.00 4.01
4095 7852 1.408822 GGAGGGTTGTGATAGGCTTGG 60.409 57.143 0.00 0.00 0.00 3.61
4096 7853 0.034089 AGGGTTGTGATAGGCTTGGC 60.034 55.000 0.00 0.00 0.00 4.52
4097 7854 1.376609 GGGTTGTGATAGGCTTGGCG 61.377 60.000 0.00 0.00 0.00 5.69
4098 7855 0.392461 GGTTGTGATAGGCTTGGCGA 60.392 55.000 0.00 0.00 0.00 5.54
4099 7856 1.009829 GTTGTGATAGGCTTGGCGAG 58.990 55.000 0.00 0.00 0.00 5.03
4110 7867 4.458666 TGGCGAGCCAACGTAAAA 57.541 50.000 15.24 0.00 44.12 1.52
4111 7868 2.704108 TGGCGAGCCAACGTAAAAA 58.296 47.368 15.24 0.00 44.12 1.94
4112 7869 0.308376 TGGCGAGCCAACGTAAAAAC 59.692 50.000 15.24 0.00 44.12 2.43
4113 7870 0.589708 GGCGAGCCAACGTAAAAACT 59.410 50.000 9.58 0.00 35.81 2.66
4114 7871 1.799994 GGCGAGCCAACGTAAAAACTA 59.200 47.619 9.58 0.00 35.81 2.24
4115 7872 2.159747 GGCGAGCCAACGTAAAAACTAG 60.160 50.000 9.58 0.00 35.81 2.57
4116 7873 2.723923 GCGAGCCAACGTAAAAACTAGC 60.724 50.000 0.00 0.00 35.59 3.42
4117 7874 2.159747 CGAGCCAACGTAAAAACTAGCC 60.160 50.000 0.00 0.00 0.00 3.93
4118 7875 2.809696 GAGCCAACGTAAAAACTAGCCA 59.190 45.455 0.00 0.00 0.00 4.75
4119 7876 2.812011 AGCCAACGTAAAAACTAGCCAG 59.188 45.455 0.00 0.00 0.00 4.85
4120 7877 2.551032 GCCAACGTAAAAACTAGCCAGT 59.449 45.455 0.00 0.00 36.19 4.00
4121 7878 3.364664 GCCAACGTAAAAACTAGCCAGTC 60.365 47.826 0.00 0.00 32.29 3.51
4122 7879 4.062991 CCAACGTAAAAACTAGCCAGTCT 58.937 43.478 0.00 0.00 32.29 3.24
4123 7880 4.514066 CCAACGTAAAAACTAGCCAGTCTT 59.486 41.667 0.00 0.00 32.29 3.01
4124 7881 5.008316 CCAACGTAAAAACTAGCCAGTCTTT 59.992 40.000 0.00 0.00 32.29 2.52
4125 7882 6.459161 CCAACGTAAAAACTAGCCAGTCTTTT 60.459 38.462 0.00 0.85 32.29 2.27
4126 7883 6.056428 ACGTAAAAACTAGCCAGTCTTTTG 57.944 37.500 12.02 0.82 32.29 2.44
4127 7884 5.008316 ACGTAAAAACTAGCCAGTCTTTTGG 59.992 40.000 12.02 8.37 41.35 3.28
4128 7885 4.937201 AAAAACTAGCCAGTCTTTTGGG 57.063 40.909 0.00 0.00 38.72 4.12
4130 7887 4.717279 AAACTAGCCAGTCTTTTGGGTA 57.283 40.909 4.17 4.17 46.57 3.69
4131 7888 4.929146 AACTAGCCAGTCTTTTGGGTAT 57.071 40.909 4.61 0.00 46.74 2.73
4132 7889 4.222124 ACTAGCCAGTCTTTTGGGTATG 57.778 45.455 4.61 2.96 46.74 2.39
4133 7890 3.844211 ACTAGCCAGTCTTTTGGGTATGA 59.156 43.478 4.61 0.00 46.74 2.15
4134 7891 3.806949 AGCCAGTCTTTTGGGTATGAA 57.193 42.857 0.00 0.00 46.57 2.57
4135 7892 4.112634 AGCCAGTCTTTTGGGTATGAAA 57.887 40.909 0.00 0.00 46.57 2.69
4136 7893 3.826729 AGCCAGTCTTTTGGGTATGAAAC 59.173 43.478 0.00 0.00 46.57 2.78
4137 7894 5.294122 AGCCAGTCTTTTGGGTATGAAACC 61.294 45.833 0.00 0.00 46.57 3.27
4157 7914 2.822764 CCATTTGGGCGAGAGTAGTAC 58.177 52.381 0.00 0.00 0.00 2.73
4158 7915 2.431057 CCATTTGGGCGAGAGTAGTACT 59.569 50.000 1.37 1.37 0.00 2.73
4159 7916 3.635373 CCATTTGGGCGAGAGTAGTACTA 59.365 47.826 1.88 0.00 0.00 1.82
4160 7917 4.261656 CCATTTGGGCGAGAGTAGTACTAG 60.262 50.000 1.87 0.00 0.00 2.57
4161 7918 2.634815 TGGGCGAGAGTAGTACTAGG 57.365 55.000 1.87 0.00 0.00 3.02
4162 7919 2.121948 TGGGCGAGAGTAGTACTAGGA 58.878 52.381 1.87 0.00 0.00 2.94
4163 7920 2.709934 TGGGCGAGAGTAGTACTAGGAT 59.290 50.000 1.87 0.00 0.00 3.24
4164 7921 3.075884 GGGCGAGAGTAGTACTAGGATG 58.924 54.545 1.87 0.00 0.00 3.51
4165 7922 3.075884 GGCGAGAGTAGTACTAGGATGG 58.924 54.545 1.87 0.00 0.00 3.51
4166 7923 3.075884 GCGAGAGTAGTACTAGGATGGG 58.924 54.545 1.87 0.00 0.00 4.00
4167 7924 3.496515 GCGAGAGTAGTACTAGGATGGGT 60.497 52.174 1.87 0.00 0.00 4.51
4168 7925 4.066490 CGAGAGTAGTACTAGGATGGGTG 58.934 52.174 1.87 0.00 0.00 4.61
4169 7926 4.202336 CGAGAGTAGTACTAGGATGGGTGA 60.202 50.000 1.87 0.00 0.00 4.02
4170 7927 5.051409 AGAGTAGTACTAGGATGGGTGAC 57.949 47.826 1.87 0.00 0.00 3.67
4182 7939 4.234673 GGTGACCTCCTGGGAAGT 57.765 61.111 0.00 0.00 38.76 3.01
4183 7940 1.984020 GGTGACCTCCTGGGAAGTC 59.016 63.158 10.52 10.52 36.44 3.01
4184 7941 1.554583 GGTGACCTCCTGGGAAGTCC 61.555 65.000 13.79 6.97 35.38 3.85
4185 7942 0.545548 GTGACCTCCTGGGAAGTCCT 60.546 60.000 13.79 0.00 35.38 3.85
4186 7943 0.193574 TGACCTCCTGGGAAGTCCTT 59.806 55.000 13.79 0.00 35.38 3.36
4187 7944 0.615850 GACCTCCTGGGAAGTCCTTG 59.384 60.000 7.04 0.00 38.76 3.61
4188 7945 0.104409 ACCTCCTGGGAAGTCCTTGT 60.104 55.000 0.00 0.00 38.76 3.16
4189 7946 0.326264 CCTCCTGGGAAGTCCTTGTG 59.674 60.000 0.00 0.00 37.23 3.33
4190 7947 1.352083 CTCCTGGGAAGTCCTTGTGA 58.648 55.000 0.00 0.00 36.20 3.58
4191 7948 1.699634 CTCCTGGGAAGTCCTTGTGAA 59.300 52.381 0.00 0.00 36.20 3.18
4192 7949 2.106511 CTCCTGGGAAGTCCTTGTGAAA 59.893 50.000 0.00 0.00 36.20 2.69
4193 7950 2.106511 TCCTGGGAAGTCCTTGTGAAAG 59.893 50.000 0.00 0.00 36.20 2.62
4194 7951 2.508526 CTGGGAAGTCCTTGTGAAAGG 58.491 52.381 0.00 0.00 41.35 3.11
4195 7952 1.144913 TGGGAAGTCCTTGTGAAAGGG 59.855 52.381 4.73 0.00 40.38 3.95
4196 7953 1.145119 GGGAAGTCCTTGTGAAAGGGT 59.855 52.381 4.73 0.00 40.38 4.34
4197 7954 2.424379 GGGAAGTCCTTGTGAAAGGGTT 60.424 50.000 4.73 0.00 40.38 4.11
4198 7955 3.296854 GGAAGTCCTTGTGAAAGGGTTT 58.703 45.455 4.73 0.44 40.38 3.27
4199 7956 3.318275 GGAAGTCCTTGTGAAAGGGTTTC 59.682 47.826 4.73 8.41 40.38 2.78
4200 7957 3.662759 AGTCCTTGTGAAAGGGTTTCA 57.337 42.857 4.73 0.00 46.68 2.69
4210 7967 5.975988 TGAAAGGGTTTCATATCTAGCCT 57.024 39.130 0.00 0.00 44.21 4.58
4212 7969 6.827727 TGAAAGGGTTTCATATCTAGCCTAC 58.172 40.000 0.00 0.00 44.21 3.18
4213 7970 5.827326 AAGGGTTTCATATCTAGCCTACC 57.173 43.478 0.00 0.00 38.75 3.18
4214 7971 4.168883 AGGGTTTCATATCTAGCCTACCC 58.831 47.826 0.00 0.00 43.42 3.69
4215 7972 3.263681 GGGTTTCATATCTAGCCTACCCC 59.736 52.174 0.00 0.00 38.39 4.95
4216 7973 3.908103 GGTTTCATATCTAGCCTACCCCA 59.092 47.826 0.00 0.00 0.00 4.96
4217 7974 4.349930 GGTTTCATATCTAGCCTACCCCAA 59.650 45.833 0.00 0.00 0.00 4.12
4218 7975 5.306394 GTTTCATATCTAGCCTACCCCAAC 58.694 45.833 0.00 0.00 0.00 3.77
4219 7976 4.487282 TCATATCTAGCCTACCCCAACT 57.513 45.455 0.00 0.00 0.00 3.16
4220 7977 4.827789 TCATATCTAGCCTACCCCAACTT 58.172 43.478 0.00 0.00 0.00 2.66
4221 7978 4.593206 TCATATCTAGCCTACCCCAACTTG 59.407 45.833 0.00 0.00 0.00 3.16
4222 7979 2.337359 TCTAGCCTACCCCAACTTGT 57.663 50.000 0.00 0.00 0.00 3.16
4223 7980 2.627933 TCTAGCCTACCCCAACTTGTT 58.372 47.619 0.00 0.00 0.00 2.83
4224 7981 2.983898 TCTAGCCTACCCCAACTTGTTT 59.016 45.455 0.00 0.00 0.00 2.83
4225 7982 1.995376 AGCCTACCCCAACTTGTTTG 58.005 50.000 0.00 0.00 34.63 2.93
4237 7994 5.213891 CAACTTGTTTGGGATAAAAGGCT 57.786 39.130 0.00 0.00 0.00 4.58
4238 7995 5.610398 CAACTTGTTTGGGATAAAAGGCTT 58.390 37.500 0.00 0.00 0.00 4.35
4239 7996 5.468540 ACTTGTTTGGGATAAAAGGCTTC 57.531 39.130 0.00 0.00 0.00 3.86
4240 7997 4.022329 ACTTGTTTGGGATAAAAGGCTTCG 60.022 41.667 0.00 0.00 0.00 3.79
4241 7998 3.492337 TGTTTGGGATAAAAGGCTTCGT 58.508 40.909 0.00 0.00 0.00 3.85
4242 7999 4.653868 TGTTTGGGATAAAAGGCTTCGTA 58.346 39.130 0.00 0.00 0.00 3.43
4243 8000 5.071370 TGTTTGGGATAAAAGGCTTCGTAA 58.929 37.500 0.00 0.00 0.00 3.18
4244 8001 5.182380 TGTTTGGGATAAAAGGCTTCGTAAG 59.818 40.000 0.00 0.00 0.00 2.34
4245 8002 4.563140 TGGGATAAAAGGCTTCGTAAGT 57.437 40.909 0.00 0.00 39.48 2.24
4246 8003 5.680594 TGGGATAAAAGGCTTCGTAAGTA 57.319 39.130 0.00 0.00 39.48 2.24
4247 8004 6.052405 TGGGATAAAAGGCTTCGTAAGTAA 57.948 37.500 0.00 0.00 39.48 2.24
4248 8005 6.110707 TGGGATAAAAGGCTTCGTAAGTAAG 58.889 40.000 0.00 0.00 39.48 2.34
4320 8077 5.349270 CACATTGATTTGGCACACATAAAGG 59.651 40.000 0.00 0.00 39.29 3.11
4389 8162 7.064609 CCACACATAATCGTTGATTCAACTAGT 59.935 37.037 23.29 16.06 41.62 2.57
4647 10916 6.686484 ATATGTGGTAGAATCCATGCTACA 57.314 37.500 6.98 0.00 38.93 2.74
4654 10923 4.550076 AGAATCCATGCTACATAGGCTC 57.450 45.455 0.00 0.00 0.00 4.70
4901 13709 6.327934 TCGCTCAGGTTAAGTACTTCATTAC 58.672 40.000 12.39 6.48 0.00 1.89
4950 13761 1.808945 CTTGTAGCAGCAAGACCCTTG 59.191 52.381 13.01 2.54 46.34 3.61
5160 14956 9.462174 CTAACTGCAAAACTACAATGAAAATCA 57.538 29.630 0.00 0.00 0.00 2.57
5381 17736 2.100216 CGTACGCATTTGGCCTGC 59.900 61.111 3.32 4.54 40.31 4.85
5424 17779 0.395724 TCTGTCCTCAGCGCTCCATA 60.396 55.000 7.13 0.00 41.10 2.74
5726 20858 9.143631 GATGCTTGTTTAGATTTGTTGCTTAAT 57.856 29.630 0.00 0.00 0.00 1.40
5868 21000 3.671716 AGTTAATTGTCGGTTGGACCTC 58.328 45.455 0.00 0.00 45.46 3.85
6045 25905 9.003658 AGTTCAGTTCTGTTAATAGAAACATGG 57.996 33.333 15.32 5.17 38.61 3.66
6192 26085 2.484889 GCTAATTTAGGCTCCCTGTCG 58.515 52.381 5.61 0.00 34.61 4.35
7287 30608 3.149196 CCCTAACTTGAAGAAGCTTGCA 58.851 45.455 2.10 0.00 31.68 4.08
7322 30649 0.914644 CCAGCAAATCCTCTCCCTCA 59.085 55.000 0.00 0.00 0.00 3.86
7346 30673 1.895131 ACTCACCCAATCCATGTTTGC 59.105 47.619 0.00 0.00 0.00 3.68
7786 35845 4.061596 GCAAATCATCAGGTAGAGGTAGC 58.938 47.826 0.00 0.00 0.00 3.58
7795 39391 1.402456 GGTAGAGGTAGCGTGTGTGTG 60.402 57.143 0.00 0.00 0.00 3.82
7796 39392 1.268899 GTAGAGGTAGCGTGTGTGTGT 59.731 52.381 0.00 0.00 0.00 3.72
7858 39454 7.588854 CAGCACGTCTTTTCCATATGAATAATG 59.411 37.037 3.65 0.00 31.67 1.90
7915 39511 1.666553 CGCTGTCGGCTTGTGGTTA 60.667 57.895 1.37 0.00 39.13 2.85
8325 40734 5.988561 TGATGGAAGGAATTTTGTTTTTCGG 59.011 36.000 0.00 0.00 0.00 4.30
8332 40741 8.950208 AAGGAATTTTGTTTTTCGGTGATAAA 57.050 26.923 0.00 0.00 0.00 1.40
8404 40813 6.842437 TTTGCTTCAGTATAGTCTCACTCT 57.158 37.500 0.00 0.00 0.00 3.24
8406 40815 6.201226 TGCTTCAGTATAGTCTCACTCTTG 57.799 41.667 0.00 0.00 0.00 3.02
8407 40816 5.126222 TGCTTCAGTATAGTCTCACTCTTGG 59.874 44.000 0.00 0.00 0.00 3.61
8410 40819 7.417342 GCTTCAGTATAGTCTCACTCTTGGAAT 60.417 40.741 0.00 0.00 0.00 3.01
8412 40821 5.982516 CAGTATAGTCTCACTCTTGGAATGC 59.017 44.000 0.00 0.00 0.00 3.56
8413 40822 2.777832 AGTCTCACTCTTGGAATGCC 57.222 50.000 0.00 0.00 0.00 4.40
8414 40823 2.264455 AGTCTCACTCTTGGAATGCCT 58.736 47.619 0.00 0.00 34.31 4.75
8415 40824 2.027377 AGTCTCACTCTTGGAATGCCTG 60.027 50.000 0.00 0.00 34.31 4.85
8416 40825 1.280133 TCTCACTCTTGGAATGCCTGG 59.720 52.381 0.00 0.00 34.31 4.45
8417 40826 1.280133 CTCACTCTTGGAATGCCTGGA 59.720 52.381 0.00 0.00 34.31 3.86
8418 40827 1.918262 TCACTCTTGGAATGCCTGGAT 59.082 47.619 0.00 0.00 34.31 3.41
8420 40829 3.523157 TCACTCTTGGAATGCCTGGATTA 59.477 43.478 0.00 0.00 34.31 1.75
8422 40831 3.266772 ACTCTTGGAATGCCTGGATTACA 59.733 43.478 0.00 0.00 34.31 2.41
8423 40832 4.079558 ACTCTTGGAATGCCTGGATTACAT 60.080 41.667 0.00 0.00 34.31 2.29
8424 40833 4.870636 TCTTGGAATGCCTGGATTACATT 58.129 39.130 0.00 0.00 36.74 2.71
8426 40835 5.360714 TCTTGGAATGCCTGGATTACATTTC 59.639 40.000 0.00 0.00 34.28 2.17
8428 40837 6.012337 TGGAATGCCTGGATTACATTTCTA 57.988 37.500 0.00 0.00 34.28 2.10
8429 40838 6.613699 TGGAATGCCTGGATTACATTTCTAT 58.386 36.000 0.00 0.00 34.28 1.98
8432 40841 9.905713 GGAATGCCTGGATTACATTTCTATATA 57.094 33.333 0.00 0.00 34.28 0.86
8480 41242 7.754851 AAGGTTTGTCCATTTACGTTTAGAT 57.245 32.000 0.00 0.00 39.02 1.98
8482 41244 9.457436 AAGGTTTGTCCATTTACGTTTAGATAT 57.543 29.630 0.00 0.00 39.02 1.63
8511 41273 9.331282 AGAAACATAATACAAATAGGAGCACTC 57.669 33.333 0.00 0.00 0.00 3.51
8512 41274 7.715265 AACATAATACAAATAGGAGCACTCG 57.285 36.000 0.00 0.00 0.00 4.18
8514 41276 6.701841 ACATAATACAAATAGGAGCACTCGTG 59.298 38.462 3.20 0.00 0.00 4.35
8515 41277 5.339008 AATACAAATAGGAGCACTCGTGA 57.661 39.130 0.39 0.00 0.00 4.35
8516 41278 3.678056 ACAAATAGGAGCACTCGTGAA 57.322 42.857 0.39 0.00 0.00 3.18
8517 41279 3.589988 ACAAATAGGAGCACTCGTGAAG 58.410 45.455 0.39 0.00 0.00 3.02
8518 41280 2.932614 CAAATAGGAGCACTCGTGAAGG 59.067 50.000 0.39 0.00 0.00 3.46
8519 41281 2.145397 ATAGGAGCACTCGTGAAGGA 57.855 50.000 0.39 0.00 0.00 3.36
8520 41282 1.919240 TAGGAGCACTCGTGAAGGAA 58.081 50.000 0.39 0.00 0.00 3.36
8522 41284 1.066573 AGGAGCACTCGTGAAGGAATG 60.067 52.381 0.39 0.00 0.00 2.67
8523 41285 1.066858 GGAGCACTCGTGAAGGAATGA 60.067 52.381 0.39 0.00 0.00 2.57
8525 41287 2.413453 GAGCACTCGTGAAGGAATGAAC 59.587 50.000 0.39 0.00 0.00 3.18
8526 41288 1.126846 GCACTCGTGAAGGAATGAACG 59.873 52.381 0.39 0.00 37.38 3.95
8527 41289 2.672714 CACTCGTGAAGGAATGAACGA 58.327 47.619 0.00 0.00 42.30 3.85
8529 41291 2.363788 TCGTGAAGGAATGAACGAGG 57.636 50.000 0.00 0.00 39.90 4.63
8530 41292 0.721718 CGTGAAGGAATGAACGAGGC 59.278 55.000 0.00 0.00 38.27 4.70
8531 41293 1.673033 CGTGAAGGAATGAACGAGGCT 60.673 52.381 0.00 0.00 38.27 4.58
8532 41294 2.003301 GTGAAGGAATGAACGAGGCTC 58.997 52.381 3.87 3.87 0.00 4.70
8534 41296 0.984230 AAGGAATGAACGAGGCTCCA 59.016 50.000 9.32 1.24 0.00 3.86
8538 41300 0.539051 AATGAACGAGGCTCCAGAGG 59.461 55.000 9.32 0.00 0.00 3.69
8539 41301 1.333636 ATGAACGAGGCTCCAGAGGG 61.334 60.000 9.32 0.00 0.00 4.30
8541 41303 1.229209 AACGAGGCTCCAGAGGGAA 60.229 57.895 9.32 0.00 44.38 3.97
8544 41306 0.543749 CGAGGCTCCAGAGGGAAAAT 59.456 55.000 9.32 0.00 44.38 1.82
8545 41307 1.065126 CGAGGCTCCAGAGGGAAAATT 60.065 52.381 9.32 0.00 44.38 1.82
8546 41308 2.619074 CGAGGCTCCAGAGGGAAAATTT 60.619 50.000 9.32 0.00 44.38 1.82
8548 41310 2.110721 AGGCTCCAGAGGGAAAATTTGT 59.889 45.455 0.00 0.00 44.38 2.83
8549 41311 3.333680 AGGCTCCAGAGGGAAAATTTGTA 59.666 43.478 0.00 0.00 44.38 2.41
8550 41312 4.086457 GGCTCCAGAGGGAAAATTTGTAA 58.914 43.478 0.00 0.00 44.38 2.41
8551 41313 4.158579 GGCTCCAGAGGGAAAATTTGTAAG 59.841 45.833 0.00 0.00 44.38 2.34
8553 41315 5.654209 GCTCCAGAGGGAAAATTTGTAAGAT 59.346 40.000 0.00 0.00 44.38 2.40
8554 41316 6.405176 GCTCCAGAGGGAAAATTTGTAAGATG 60.405 42.308 0.00 0.00 44.38 2.90
8556 41318 7.010160 TCCAGAGGGAAAATTTGTAAGATGTT 58.990 34.615 0.00 0.00 41.32 2.71
8557 41319 7.039784 TCCAGAGGGAAAATTTGTAAGATGTTG 60.040 37.037 0.00 0.00 41.32 3.33
8558 41320 7.255942 CCAGAGGGAAAATTTGTAAGATGTTGT 60.256 37.037 0.00 0.00 35.59 3.32
8564 41326 9.313118 GGAAAATTTGTAAGATGTTGTCTTTGT 57.687 29.630 0.00 0.00 44.80 2.83
8566 41328 8.647143 AAATTTGTAAGATGTTGTCTTTGTGG 57.353 30.769 0.00 0.00 44.80 4.17
8567 41329 6.767524 TTTGTAAGATGTTGTCTTTGTGGT 57.232 33.333 0.00 0.00 44.80 4.16
8568 41330 7.867305 TTTGTAAGATGTTGTCTTTGTGGTA 57.133 32.000 0.00 0.00 44.80 3.25
8570 41332 7.433708 TGTAAGATGTTGTCTTTGTGGTATG 57.566 36.000 0.00 0.00 44.80 2.39
8571 41333 7.220740 TGTAAGATGTTGTCTTTGTGGTATGA 58.779 34.615 0.00 0.00 44.80 2.15
8572 41334 7.717436 TGTAAGATGTTGTCTTTGTGGTATGAA 59.283 33.333 0.00 0.00 44.80 2.57
8573 41335 7.581213 AAGATGTTGTCTTTGTGGTATGAAA 57.419 32.000 0.00 0.00 44.80 2.69
8574 41336 7.581213 AGATGTTGTCTTTGTGGTATGAAAA 57.419 32.000 0.00 0.00 31.47 2.29
8575 41337 8.006298 AGATGTTGTCTTTGTGGTATGAAAAA 57.994 30.769 0.00 0.00 31.47 1.94
8600 41362 4.559862 AAAAACCACCACATCCAAACAA 57.440 36.364 0.00 0.00 0.00 2.83
8601 41363 4.559862 AAAACCACCACATCCAAACAAA 57.440 36.364 0.00 0.00 0.00 2.83
8602 41364 3.535280 AACCACCACATCCAAACAAAC 57.465 42.857 0.00 0.00 0.00 2.93
8603 41365 1.760029 ACCACCACATCCAAACAAACC 59.240 47.619 0.00 0.00 0.00 3.27
8604 41366 1.069978 CCACCACATCCAAACAAACCC 59.930 52.381 0.00 0.00 0.00 4.11
8607 41369 1.069978 CCACATCCAAACAAACCCACC 59.930 52.381 0.00 0.00 0.00 4.61
8608 41370 1.069978 CACATCCAAACAAACCCACCC 59.930 52.381 0.00 0.00 0.00 4.61
8609 41371 1.062505 ACATCCAAACAAACCCACCCT 60.063 47.619 0.00 0.00 0.00 4.34
8610 41372 2.178106 ACATCCAAACAAACCCACCCTA 59.822 45.455 0.00 0.00 0.00 3.53
8612 41374 1.146152 TCCAAACAAACCCACCCTAGG 59.854 52.381 0.06 0.06 0.00 3.02
8613 41375 1.146152 CCAAACAAACCCACCCTAGGA 59.854 52.381 11.48 0.00 0.00 2.94
8614 41376 2.225267 CCAAACAAACCCACCCTAGGAT 60.225 50.000 11.48 0.00 0.00 3.24
8617 41379 4.586306 AACAAACCCACCCTAGGATAAG 57.414 45.455 11.48 0.00 0.00 1.73
8619 41381 3.522343 ACAAACCCACCCTAGGATAAGTC 59.478 47.826 11.48 0.00 0.00 3.01
8620 41382 3.502051 AACCCACCCTAGGATAAGTCA 57.498 47.619 11.48 0.00 0.00 3.41
8621 41383 3.726837 ACCCACCCTAGGATAAGTCAT 57.273 47.619 11.48 0.00 0.00 3.06
8622 41384 4.022359 ACCCACCCTAGGATAAGTCATT 57.978 45.455 11.48 0.00 0.00 2.57
8623 41385 5.166013 ACCCACCCTAGGATAAGTCATTA 57.834 43.478 11.48 0.00 0.00 1.90
8624 41386 4.906060 ACCCACCCTAGGATAAGTCATTAC 59.094 45.833 11.48 0.00 0.00 1.89
8626 41388 5.012148 CCCACCCTAGGATAAGTCATTACAG 59.988 48.000 11.48 0.00 0.00 2.74
8628 41390 6.326583 CCACCCTAGGATAAGTCATTACAGAA 59.673 42.308 11.48 0.00 0.00 3.02
8629 41391 7.016661 CCACCCTAGGATAAGTCATTACAGAAT 59.983 40.741 11.48 0.00 0.00 2.40
8630 41392 9.090103 CACCCTAGGATAAGTCATTACAGAATA 57.910 37.037 11.48 0.00 0.00 1.75
8686 41448 9.875691 TTGGTATAGAGATACATATCAATGCAC 57.124 33.333 0.00 0.00 39.91 4.57
8692 41454 8.320396 AGAGATACATATCAATGCACATGAAC 57.680 34.615 7.99 0.00 36.50 3.18
8693 41455 7.389884 AGAGATACATATCAATGCACATGAACC 59.610 37.037 7.99 0.00 36.50 3.62
8694 41456 6.999871 AGATACATATCAATGCACATGAACCA 59.000 34.615 7.99 0.00 36.50 3.67
8695 41457 5.252969 ACATATCAATGCACATGAACCAC 57.747 39.130 7.99 0.00 36.50 4.16
8696 41458 4.705991 ACATATCAATGCACATGAACCACA 59.294 37.500 7.99 0.00 36.50 4.17
8698 41460 6.546772 ACATATCAATGCACATGAACCACATA 59.453 34.615 7.99 0.00 35.53 2.29
8699 41461 5.918426 ATCAATGCACATGAACCACATAA 57.082 34.783 7.99 0.00 37.46 1.90
8700 41462 5.718724 TCAATGCACATGAACCACATAAA 57.281 34.783 0.00 0.00 37.46 1.40
8701 41463 6.283544 TCAATGCACATGAACCACATAAAT 57.716 33.333 0.00 0.00 37.46 1.40
8702 41464 6.100668 TCAATGCACATGAACCACATAAATG 58.899 36.000 0.00 0.00 37.46 2.32
8703 41465 4.453177 TGCACATGAACCACATAAATGG 57.547 40.909 0.00 0.00 46.10 3.16
8715 41477 4.326009 CCACATAAATGGTAAGCGTTTTGC 59.674 41.667 0.00 0.00 38.31 3.68
8716 41478 5.849564 CCACATAAATGGTAAGCGTTTTGCT 60.850 40.000 0.00 0.00 45.43 3.91
8717 41479 7.813352 CCACATAAATGGTAAGCGTTTTGCTG 61.813 42.308 0.00 0.00 43.82 4.41
8718 41480 9.849293 CCACATAAATGGTAAGCGTTTTGCTGA 62.849 40.741 0.00 0.00 43.82 4.26
8724 41486 4.922791 GCGTTTTGCTGACCTCAC 57.077 55.556 0.00 0.00 41.73 3.51
8725 41487 2.321213 GCGTTTTGCTGACCTCACT 58.679 52.632 0.00 0.00 41.73 3.41
8726 41488 1.508632 GCGTTTTGCTGACCTCACTA 58.491 50.000 0.00 0.00 41.73 2.74
8727 41489 1.871039 GCGTTTTGCTGACCTCACTAA 59.129 47.619 0.00 0.00 41.73 2.24
8728 41490 2.484264 GCGTTTTGCTGACCTCACTAAT 59.516 45.455 0.00 0.00 41.73 1.73
8729 41491 3.058224 GCGTTTTGCTGACCTCACTAATT 60.058 43.478 0.00 0.00 41.73 1.40
8730 41492 4.466828 CGTTTTGCTGACCTCACTAATTG 58.533 43.478 0.00 0.00 0.00 2.32
8731 41493 4.613622 CGTTTTGCTGACCTCACTAATTGG 60.614 45.833 0.00 0.00 0.00 3.16
8732 41494 3.788227 TTGCTGACCTCACTAATTGGT 57.212 42.857 0.00 0.00 36.70 3.67
8737 41499 0.252197 ACCTCACTAATTGGTCGGGC 59.748 55.000 10.39 0.00 0.00 6.13
8738 41500 0.463833 CCTCACTAATTGGTCGGGCC 60.464 60.000 0.00 0.00 37.90 5.80
8759 41913 4.404691 CCTTCAGGGTGAGTTGGC 57.595 61.111 0.00 0.00 0.00 4.52
8761 41915 0.178992 CCTTCAGGGTGAGTTGGCAA 60.179 55.000 0.00 0.00 0.00 4.52
8764 41918 2.151502 TCAGGGTGAGTTGGCAAAAA 57.848 45.000 0.00 0.00 0.00 1.94
8789 41943 5.757850 AAAACTGACATGTCTTGTTCCTC 57.242 39.130 25.55 0.00 39.18 3.71
8790 41944 3.409026 ACTGACATGTCTTGTTCCTCC 57.591 47.619 25.55 0.00 39.18 4.30
8792 41946 3.007398 ACTGACATGTCTTGTTCCTCCTC 59.993 47.826 25.55 0.00 39.18 3.71
8793 41947 3.242867 TGACATGTCTTGTTCCTCCTCT 58.757 45.455 25.55 0.00 39.18 3.69
8795 41949 3.513515 GACATGTCTTGTTCCTCCTCTCT 59.486 47.826 18.83 0.00 39.18 3.10
8796 41950 3.513515 ACATGTCTTGTTCCTCCTCTCTC 59.486 47.826 0.00 0.00 33.74 3.20
8797 41951 3.534357 TGTCTTGTTCCTCCTCTCTCT 57.466 47.619 0.00 0.00 0.00 3.10
8798 41952 3.426615 TGTCTTGTTCCTCCTCTCTCTC 58.573 50.000 0.00 0.00 0.00 3.20
8799 41953 2.758423 GTCTTGTTCCTCCTCTCTCTCC 59.242 54.545 0.00 0.00 0.00 3.71
8800 41954 2.652348 TCTTGTTCCTCCTCTCTCTCCT 59.348 50.000 0.00 0.00 0.00 3.69
8801 41955 3.853181 TCTTGTTCCTCCTCTCTCTCCTA 59.147 47.826 0.00 0.00 0.00 2.94
8802 41956 3.943671 TGTTCCTCCTCTCTCTCCTAG 57.056 52.381 0.00 0.00 0.00 3.02
8803 41957 2.512056 TGTTCCTCCTCTCTCTCCTAGG 59.488 54.545 0.82 0.82 0.00 3.02
8806 41960 1.428912 CCTCCTCTCTCTCCTAGGCAT 59.571 57.143 2.96 0.00 0.00 4.40
8807 41961 2.158325 CCTCCTCTCTCTCCTAGGCATT 60.158 54.545 2.96 0.00 0.00 3.56
8810 41964 3.052566 TCCTCTCTCTCCTAGGCATTTCA 60.053 47.826 2.96 0.00 0.00 2.69
8811 41965 3.903090 CCTCTCTCTCCTAGGCATTTCAT 59.097 47.826 2.96 0.00 0.00 2.57
8813 41967 4.550669 TCTCTCTCCTAGGCATTTCATCA 58.449 43.478 2.96 0.00 0.00 3.07
8814 41968 4.964897 TCTCTCTCCTAGGCATTTCATCAA 59.035 41.667 2.96 0.00 0.00 2.57
8815 41969 5.426509 TCTCTCTCCTAGGCATTTCATCAAA 59.573 40.000 2.96 0.00 0.00 2.69
8817 41971 7.290948 TCTCTCTCCTAGGCATTTCATCAAATA 59.709 37.037 2.96 0.00 30.51 1.40
8818 41972 7.982252 TCTCTCCTAGGCATTTCATCAAATAT 58.018 34.615 2.96 0.00 30.51 1.28
8819 41973 8.099537 TCTCTCCTAGGCATTTCATCAAATATC 58.900 37.037 2.96 0.00 30.51 1.63
8820 41974 7.982252 TCTCCTAGGCATTTCATCAAATATCT 58.018 34.615 2.96 0.00 30.51 1.98
8822 41976 7.748677 TCCTAGGCATTTCATCAAATATCTCA 58.251 34.615 2.96 0.00 30.51 3.27
8823 41977 8.388589 TCCTAGGCATTTCATCAAATATCTCAT 58.611 33.333 2.96 0.00 30.51 2.90
8825 41979 7.834881 AGGCATTTCATCAAATATCTCATGT 57.165 32.000 0.00 0.00 30.51 3.21
8826 41980 8.929260 AGGCATTTCATCAAATATCTCATGTA 57.071 30.769 0.00 0.00 30.51 2.29
8828 41982 8.570488 GGCATTTCATCAAATATCTCATGTACA 58.430 33.333 0.00 0.00 30.51 2.90
8834 41988 9.924650 TCATCAAATATCTCATGTACATCAGAG 57.075 33.333 15.05 14.61 0.00 3.35
8835 41989 9.924650 CATCAAATATCTCATGTACATCAGAGA 57.075 33.333 21.65 21.65 40.96 3.10
8839 41993 8.830201 AATATCTCATGTACATCAGAGAAAGC 57.170 34.615 22.67 0.00 40.19 3.51
8840 41994 5.016051 TCTCATGTACATCAGAGAAAGCC 57.984 43.478 18.70 0.00 34.45 4.35
8842 41996 5.129980 TCTCATGTACATCAGAGAAAGCCAT 59.870 40.000 18.70 0.00 34.45 4.40
8843 41997 5.748402 TCATGTACATCAGAGAAAGCCATT 58.252 37.500 5.07 0.00 0.00 3.16
8844 41998 6.182627 TCATGTACATCAGAGAAAGCCATTT 58.817 36.000 5.07 0.00 0.00 2.32
8847 42001 7.615582 TGTACATCAGAGAAAGCCATTTAAG 57.384 36.000 0.00 0.00 0.00 1.85
8850 42004 5.884792 ACATCAGAGAAAGCCATTTAAGGAG 59.115 40.000 0.00 0.00 0.00 3.69
8851 42005 4.265073 TCAGAGAAAGCCATTTAAGGAGC 58.735 43.478 0.00 0.00 0.00 4.70
8852 42006 3.379688 CAGAGAAAGCCATTTAAGGAGCC 59.620 47.826 0.00 0.00 0.00 4.70
8854 42008 2.092323 GAAAGCCATTTAAGGAGCCGT 58.908 47.619 0.00 0.00 0.00 5.68
8856 42010 0.394352 AGCCATTTAAGGAGCCGTGG 60.394 55.000 0.00 0.00 0.00 4.94
8857 42011 0.393808 GCCATTTAAGGAGCCGTGGA 60.394 55.000 0.00 0.00 0.00 4.02
8858 42012 1.750682 GCCATTTAAGGAGCCGTGGAT 60.751 52.381 0.00 0.00 0.00 3.41
8859 42013 1.949525 CCATTTAAGGAGCCGTGGATG 59.050 52.381 0.00 0.00 0.00 3.51
8861 42015 2.396590 TTTAAGGAGCCGTGGATGTC 57.603 50.000 0.00 0.00 0.00 3.06
8863 42017 1.335132 TAAGGAGCCGTGGATGTCCC 61.335 60.000 0.00 0.00 34.29 4.46
8864 42018 3.083997 GGAGCCGTGGATGTCCCT 61.084 66.667 0.00 0.00 35.38 4.20
8865 42019 2.501610 GAGCCGTGGATGTCCCTC 59.498 66.667 0.00 0.00 35.38 4.30
8866 42020 2.284625 AGCCGTGGATGTCCCTCA 60.285 61.111 0.00 0.00 35.38 3.86
8867 42021 1.690219 GAGCCGTGGATGTCCCTCAT 61.690 60.000 0.00 0.00 39.77 2.90
8868 42022 1.524621 GCCGTGGATGTCCCTCATG 60.525 63.158 0.00 0.00 36.83 3.07
8869 42023 1.146930 CCGTGGATGTCCCTCATGG 59.853 63.158 0.00 0.00 36.83 3.66
8870 42024 1.337384 CCGTGGATGTCCCTCATGGA 61.337 60.000 0.00 0.00 42.41 3.41
8871 42025 0.105593 CGTGGATGTCCCTCATGGAG 59.894 60.000 0.00 0.00 46.38 3.86
8872 42026 0.179034 GTGGATGTCCCTCATGGAGC 60.179 60.000 0.00 0.00 46.38 4.70
8873 42027 1.070445 GGATGTCCCTCATGGAGCG 59.930 63.158 0.00 0.00 46.38 5.03
8874 42028 1.070445 GATGTCCCTCATGGAGCGG 59.930 63.158 0.00 0.00 46.38 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
108 109 4.545610 GGAATTGAACAATCTGTGCGAAA 58.454 39.130 0.45 0.00 0.00 3.46
130 131 2.522060 GGCAATCTGATAGCCGACG 58.478 57.895 0.00 0.00 38.86 5.12
158 159 4.436050 GCAGAATTGAACGGTACACATCAG 60.436 45.833 0.00 0.00 0.00 2.90
163 164 3.250040 ACTTGCAGAATTGAACGGTACAC 59.750 43.478 0.00 0.00 0.00 2.90
165 166 4.483476 AACTTGCAGAATTGAACGGTAC 57.517 40.909 0.00 0.00 0.00 3.34
282 293 8.579863 ACCCCGTAGAACATACAGTATTATAAC 58.420 37.037 0.00 0.00 0.00 1.89
306 317 7.493971 TGAGATTAACTACGACTACAGAGTACC 59.506 40.741 0.00 0.00 35.45 3.34
409 441 3.794646 CGAAATTAGCGCTGCAGAG 57.205 52.632 22.90 16.90 0.00 3.35
503 715 4.026357 GGAGTCTCCCCACCCCCT 62.026 72.222 7.78 0.00 0.00 4.79
639 858 7.733047 TGTAATTAGGGCTATTATCTCTGACCA 59.267 37.037 0.00 0.00 0.00 4.02
751 973 1.893210 GCCTACCTCAGTCAGTCTGGT 60.893 57.143 0.00 0.00 43.76 4.00
863 1110 0.861837 GTGCTCACCACTTCTTCACG 59.138 55.000 0.00 0.00 41.35 4.35
939 1186 0.107897 ACGCGGGCAAATCTACATCA 60.108 50.000 12.47 0.00 0.00 3.07
1258 3174 0.981183 AAGAGCAACCATGTCCCGTA 59.019 50.000 0.00 0.00 0.00 4.02
1546 3466 4.067896 ACACGCACTCATTTCTTCAGAAT 58.932 39.130 0.00 0.00 33.54 2.40
1594 3514 4.052159 AGTCTGTCTGAACTCACAACAG 57.948 45.455 9.66 9.66 38.91 3.16
1652 3572 2.683968 TCTTCGACATTCAAACGGGAG 58.316 47.619 0.00 0.00 0.00 4.30
1659 3579 2.163818 ACCGCTTCTTCGACATTCAA 57.836 45.000 0.00 0.00 0.00 2.69
1751 3671 3.664025 CGAACTTGGTTCTTGCGAAATTC 59.336 43.478 8.46 0.00 40.05 2.17
1757 3677 0.934496 TGACGAACTTGGTTCTTGCG 59.066 50.000 8.46 0.00 40.05 4.85
1820 3740 5.627499 TGCTACCTGAAATGTCAAACATC 57.373 39.130 0.00 0.00 37.97 3.06
1883 3803 9.084533 GTAACTGATCTTGGTCTTATCCTAGAT 57.915 37.037 8.80 8.80 46.69 1.98
1891 3811 7.038302 ACCTGATTGTAACTGATCTTGGTCTTA 60.038 37.037 0.00 0.00 30.18 2.10
1893 3813 5.249393 ACCTGATTGTAACTGATCTTGGTCT 59.751 40.000 0.00 0.00 30.18 3.85
1894 3814 5.491982 ACCTGATTGTAACTGATCTTGGTC 58.508 41.667 0.00 0.00 30.18 4.02
2052 3972 5.532406 TGTCTGTGGAGGAGAAATTTTTCAG 59.468 40.000 10.57 0.00 39.61 3.02
2099 4019 4.715527 ATAACTCAGTACGGGACAGAAC 57.284 45.455 0.00 0.00 0.00 3.01
2105 4025 6.105397 AGTTTCAAATAACTCAGTACGGGA 57.895 37.500 0.00 0.00 33.12 5.14
2119 4039 6.517362 GCCCTCAAAAGAAGCTAGTTTCAAAT 60.517 38.462 19.87 4.61 0.00 2.32
2182 4102 5.423610 TCAAAGTCCCCAAAAACATGAAGAA 59.576 36.000 0.00 0.00 0.00 2.52
2213 4133 4.163839 TCCAAATTAGGGGCATCCAAATTG 59.836 41.667 0.00 0.00 38.24 2.32
2219 4139 2.001076 CCTCCAAATTAGGGGCATCC 57.999 55.000 0.00 0.00 0.00 3.51
2239 4159 0.037882 TGCAAGAGAGAGAACGGCAG 60.038 55.000 0.00 0.00 0.00 4.85
2240 4160 0.319900 GTGCAAGAGAGAGAACGGCA 60.320 55.000 0.00 0.00 0.00 5.69
2244 4164 3.124976 GCTTCATGTGCAAGAGAGAGAAC 59.875 47.826 8.20 0.00 0.00 3.01
2258 4178 4.916983 TTGTTGTGCTTTAGCTTCATGT 57.083 36.364 0.00 0.00 42.66 3.21
2276 4196 1.612950 TGCGCAATTGGAACAGATTGT 59.387 42.857 8.16 0.00 42.39 2.71
2302 4222 3.181440 TGACTTCTTGACATGGCTTTCCT 60.181 43.478 0.00 0.00 0.00 3.36
2399 4319 2.034305 CAGAAGAAGGCCATAGCAATGC 59.966 50.000 5.01 0.00 42.56 3.56
2426 4346 5.567623 GCAACAGAGATTAGTCAGGAACTCA 60.568 44.000 0.00 0.00 39.55 3.41
2478 4398 9.507280 CTTTGTAAGTATGCACCATTTTGATAG 57.493 33.333 0.00 0.00 0.00 2.08
2606 4526 5.916883 CCACATGTCAAGCTTCTTTAAGTTG 59.083 40.000 0.00 0.00 34.99 3.16
2661 4581 3.201487 AGCATGGATTGAATGACTGAGGA 59.799 43.478 0.00 0.00 0.00 3.71
2697 4617 9.625747 TTCACAACTCATTAATTAGATGCCATA 57.374 29.630 3.65 0.00 0.00 2.74
2698 4618 8.523915 TTCACAACTCATTAATTAGATGCCAT 57.476 30.769 3.65 0.00 0.00 4.40
2699 4619 7.936496 TTCACAACTCATTAATTAGATGCCA 57.064 32.000 3.65 0.00 0.00 4.92
2700 4620 9.638239 TTTTTCACAACTCATTAATTAGATGCC 57.362 29.630 3.65 0.00 0.00 4.40
2729 4649 4.633126 GTGCTCAAAGATTGACTCTGCATA 59.367 41.667 7.65 0.00 38.71 3.14
2732 4652 2.810274 TGTGCTCAAAGATTGACTCTGC 59.190 45.455 0.00 0.00 35.46 4.26
2736 4656 3.087031 CCCATGTGCTCAAAGATTGACT 58.913 45.455 0.00 0.00 35.46 3.41
2737 4657 3.084039 TCCCATGTGCTCAAAGATTGAC 58.916 45.455 0.00 0.00 35.46 3.18
2741 4661 3.552875 CTGATCCCATGTGCTCAAAGAT 58.447 45.455 0.00 0.00 0.00 2.40
2746 4666 1.419012 GATCCTGATCCCATGTGCTCA 59.581 52.381 0.00 0.00 31.76 4.26
2751 4671 0.769873 GCCTGATCCTGATCCCATGT 59.230 55.000 4.76 0.00 37.02 3.21
2755 4675 1.670590 CTCGCCTGATCCTGATCCC 59.329 63.158 4.76 0.00 37.02 3.85
2779 4699 1.131883 GCACTTGCATGGTAAGCTCTG 59.868 52.381 4.44 0.00 41.59 3.35
2802 4722 2.499693 TGGCTGTTACGAGATGATCCAA 59.500 45.455 0.00 0.00 0.00 3.53
2831 4751 1.228459 GTCCACACCCCTGAAACCC 60.228 63.158 0.00 0.00 0.00 4.11
2833 4753 1.172812 GCAGTCCACACCCCTGAAAC 61.173 60.000 0.00 0.00 0.00 2.78
3002 4922 5.070714 TGCAGGGATGCATGCTTATAAAAAT 59.929 36.000 24.11 0.24 42.98 1.82
3048 4968 2.139118 TGCAAATTAAACCGGCAAAGC 58.861 42.857 0.00 0.79 0.00 3.51
3114 5034 6.070829 CGTCAAATGCACACATATATAACCG 58.929 40.000 0.00 0.00 34.62 4.44
3138 5058 1.450531 CCCTCTGCCCGATGAATTGC 61.451 60.000 0.00 0.00 0.00 3.56
3148 5068 1.136500 CGTTAAGTACTCCCTCTGCCC 59.864 57.143 0.00 0.00 0.00 5.36
3206 5126 2.186826 AACAGCGGCTTGTGTGTCC 61.187 57.895 0.00 0.00 0.00 4.02
3223 5143 1.795170 GCGCAGTTGAGGAAAGGCAA 61.795 55.000 0.30 0.00 0.00 4.52
3228 5148 1.148273 ACTGGCGCAGTTGAGGAAA 59.852 52.632 10.83 0.00 42.59 3.13
3240 5160 0.247736 AAGGACTAGCTGAACTGGCG 59.752 55.000 0.00 0.00 34.52 5.69
3358 5287 3.623934 ATTTTCAGGGGCTGGGGGC 62.624 63.158 0.00 0.00 40.90 5.80
3842 7599 8.560374 GTTGCTAGTCATTAATTAATCCTCACC 58.440 37.037 7.76 0.00 0.00 4.02
3905 7662 7.959651 GCAACTGAATCTAAACAAGTATGTGAG 59.040 37.037 0.00 0.00 40.46 3.51
3992 7749 7.758076 CGGCATCCGTATCTAGACAAATATAAA 59.242 37.037 0.00 0.00 42.73 1.40
3995 7752 5.651530 CGGCATCCGTATCTAGACAAATAT 58.348 41.667 0.00 0.00 42.73 1.28
3996 7753 5.055642 CGGCATCCGTATCTAGACAAATA 57.944 43.478 0.00 0.00 42.73 1.40
3997 7754 3.914312 CGGCATCCGTATCTAGACAAAT 58.086 45.455 0.00 0.00 42.73 2.32
3998 7755 3.364889 CGGCATCCGTATCTAGACAAA 57.635 47.619 0.00 0.00 42.73 2.83
4032 7789 4.464069 GGCTATGCCTAGAAGACATAGG 57.536 50.000 16.76 0.00 46.69 2.57
4045 7802 2.902343 GCTTGGACCGGCTATGCC 60.902 66.667 0.00 0.00 46.75 4.40
4046 7803 2.902343 GGCTTGGACCGGCTATGC 60.902 66.667 0.00 6.47 0.00 3.14
4047 7804 2.203209 GGGCTTGGACCGGCTATG 60.203 66.667 0.00 0.00 0.00 2.23
4054 7811 1.378119 CTTTACCCGGGCTTGGACC 60.378 63.158 24.08 0.00 0.00 4.46
4055 7812 1.378119 CCTTTACCCGGGCTTGGAC 60.378 63.158 24.08 0.00 0.00 4.02
4056 7813 1.539372 TCCTTTACCCGGGCTTGGA 60.539 57.895 24.08 20.13 0.00 3.53
4057 7814 1.077716 CTCCTTTACCCGGGCTTGG 60.078 63.158 24.08 17.99 0.00 3.61
4058 7815 1.077716 CCTCCTTTACCCGGGCTTG 60.078 63.158 24.08 8.51 0.00 4.01
4059 7816 1.229723 TCCTCCTTTACCCGGGCTT 60.230 57.895 24.08 4.08 0.00 4.35
4060 7817 1.689582 CTCCTCCTTTACCCGGGCT 60.690 63.158 24.08 10.93 0.00 5.19
4061 7818 2.743179 CCTCCTCCTTTACCCGGGC 61.743 68.421 24.08 0.00 0.00 6.13
4062 7819 2.070650 CCCTCCTCCTTTACCCGGG 61.071 68.421 22.25 22.25 0.00 5.73
4063 7820 0.912968 AACCCTCCTCCTTTACCCGG 60.913 60.000 0.00 0.00 0.00 5.73
4064 7821 0.252197 CAACCCTCCTCCTTTACCCG 59.748 60.000 0.00 0.00 0.00 5.28
4065 7822 1.004394 CACAACCCTCCTCCTTTACCC 59.996 57.143 0.00 0.00 0.00 3.69
4066 7823 1.982958 TCACAACCCTCCTCCTTTACC 59.017 52.381 0.00 0.00 0.00 2.85
4067 7824 4.141688 CCTATCACAACCCTCCTCCTTTAC 60.142 50.000 0.00 0.00 0.00 2.01
4068 7825 4.037927 CCTATCACAACCCTCCTCCTTTA 58.962 47.826 0.00 0.00 0.00 1.85
4069 7826 2.846827 CCTATCACAACCCTCCTCCTTT 59.153 50.000 0.00 0.00 0.00 3.11
4070 7827 2.482494 CCTATCACAACCCTCCTCCTT 58.518 52.381 0.00 0.00 0.00 3.36
4071 7828 1.972207 GCCTATCACAACCCTCCTCCT 60.972 57.143 0.00 0.00 0.00 3.69
4072 7829 0.470341 GCCTATCACAACCCTCCTCC 59.530 60.000 0.00 0.00 0.00 4.30
4073 7830 1.501582 AGCCTATCACAACCCTCCTC 58.498 55.000 0.00 0.00 0.00 3.71
4074 7831 1.561542 CAAGCCTATCACAACCCTCCT 59.438 52.381 0.00 0.00 0.00 3.69
4075 7832 1.408822 CCAAGCCTATCACAACCCTCC 60.409 57.143 0.00 0.00 0.00 4.30
4076 7833 2.019156 GCCAAGCCTATCACAACCCTC 61.019 57.143 0.00 0.00 0.00 4.30
4077 7834 0.034089 GCCAAGCCTATCACAACCCT 60.034 55.000 0.00 0.00 0.00 4.34
4078 7835 1.376609 CGCCAAGCCTATCACAACCC 61.377 60.000 0.00 0.00 0.00 4.11
4079 7836 0.392461 TCGCCAAGCCTATCACAACC 60.392 55.000 0.00 0.00 0.00 3.77
4080 7837 1.009829 CTCGCCAAGCCTATCACAAC 58.990 55.000 0.00 0.00 0.00 3.32
4081 7838 0.744414 GCTCGCCAAGCCTATCACAA 60.744 55.000 0.00 0.00 45.92 3.33
4082 7839 1.153369 GCTCGCCAAGCCTATCACA 60.153 57.895 0.00 0.00 45.92 3.58
4083 7840 3.724494 GCTCGCCAAGCCTATCAC 58.276 61.111 0.00 0.00 45.92 3.06
4093 7850 0.308376 GTTTTTACGTTGGCTCGCCA 59.692 50.000 6.52 6.52 45.63 5.69
4094 7851 0.589708 AGTTTTTACGTTGGCTCGCC 59.410 50.000 0.00 0.00 0.00 5.54
4095 7852 2.723923 GCTAGTTTTTACGTTGGCTCGC 60.724 50.000 0.00 0.00 0.00 5.03
4096 7853 2.159747 GGCTAGTTTTTACGTTGGCTCG 60.160 50.000 0.00 1.70 0.00 5.03
4097 7854 2.809696 TGGCTAGTTTTTACGTTGGCTC 59.190 45.455 0.00 0.00 0.00 4.70
4098 7855 2.812011 CTGGCTAGTTTTTACGTTGGCT 59.188 45.455 0.00 0.00 0.00 4.75
4099 7856 2.551032 ACTGGCTAGTTTTTACGTTGGC 59.449 45.455 0.00 0.00 31.66 4.52
4100 7857 4.062991 AGACTGGCTAGTTTTTACGTTGG 58.937 43.478 3.47 0.00 37.25 3.77
4101 7858 5.668558 AAGACTGGCTAGTTTTTACGTTG 57.331 39.130 3.47 0.00 37.25 4.10
4102 7859 6.459161 CCAAAAGACTGGCTAGTTTTTACGTT 60.459 38.462 17.28 1.45 39.50 3.99
4103 7860 5.008316 CCAAAAGACTGGCTAGTTTTTACGT 59.992 40.000 17.28 1.78 39.50 3.57
4104 7861 5.449304 CCAAAAGACTGGCTAGTTTTTACG 58.551 41.667 17.28 12.06 39.50 3.18
4105 7862 5.301045 ACCCAAAAGACTGGCTAGTTTTTAC 59.699 40.000 17.28 0.00 39.50 2.01
4106 7863 5.451354 ACCCAAAAGACTGGCTAGTTTTTA 58.549 37.500 17.28 0.00 39.50 1.52
4107 7864 4.286707 ACCCAAAAGACTGGCTAGTTTTT 58.713 39.130 12.22 12.22 41.44 1.94
4108 7865 3.910989 ACCCAAAAGACTGGCTAGTTTT 58.089 40.909 3.47 1.40 37.25 2.43
4109 7866 3.595190 ACCCAAAAGACTGGCTAGTTT 57.405 42.857 3.47 0.00 37.25 2.66
4110 7867 4.288626 TCATACCCAAAAGACTGGCTAGTT 59.711 41.667 3.47 0.00 37.25 2.24
4111 7868 3.844211 TCATACCCAAAAGACTGGCTAGT 59.156 43.478 0.69 0.69 40.66 2.57
4112 7869 4.487714 TCATACCCAAAAGACTGGCTAG 57.512 45.455 0.00 0.00 34.88 3.42
4113 7870 4.919774 TTCATACCCAAAAGACTGGCTA 57.080 40.909 0.00 0.00 34.88 3.93
4114 7871 3.806949 TTCATACCCAAAAGACTGGCT 57.193 42.857 0.00 0.00 34.88 4.75
4115 7872 3.056821 GGTTTCATACCCAAAAGACTGGC 60.057 47.826 0.00 0.00 41.43 4.85
4116 7873 4.783764 GGTTTCATACCCAAAAGACTGG 57.216 45.455 0.00 0.00 41.43 4.00
4137 7894 2.431057 AGTACTACTCTCGCCCAAATGG 59.569 50.000 0.00 0.00 37.09 3.16
4138 7895 3.802948 AGTACTACTCTCGCCCAAATG 57.197 47.619 0.00 0.00 0.00 2.32
4139 7896 3.890147 CCTAGTACTACTCTCGCCCAAAT 59.110 47.826 0.00 0.00 0.00 2.32
4140 7897 3.054139 TCCTAGTACTACTCTCGCCCAAA 60.054 47.826 0.00 0.00 0.00 3.28
4141 7898 2.507058 TCCTAGTACTACTCTCGCCCAA 59.493 50.000 0.00 0.00 0.00 4.12
4142 7899 2.121948 TCCTAGTACTACTCTCGCCCA 58.878 52.381 0.00 0.00 0.00 5.36
4143 7900 2.926778 TCCTAGTACTACTCTCGCCC 57.073 55.000 0.00 0.00 0.00 6.13
4144 7901 3.075884 CCATCCTAGTACTACTCTCGCC 58.924 54.545 0.00 0.00 0.00 5.54
4145 7902 3.075884 CCCATCCTAGTACTACTCTCGC 58.924 54.545 0.00 0.00 0.00 5.03
4146 7903 4.066490 CACCCATCCTAGTACTACTCTCG 58.934 52.174 0.00 0.00 0.00 4.04
4147 7904 5.065235 GTCACCCATCCTAGTACTACTCTC 58.935 50.000 0.00 0.00 0.00 3.20
4148 7905 4.141205 GGTCACCCATCCTAGTACTACTCT 60.141 50.000 0.00 0.00 0.00 3.24
4149 7906 4.141205 AGGTCACCCATCCTAGTACTACTC 60.141 50.000 0.00 0.00 31.66 2.59
4150 7907 3.792684 AGGTCACCCATCCTAGTACTACT 59.207 47.826 0.00 0.00 31.66 2.57
4151 7908 4.143543 GAGGTCACCCATCCTAGTACTAC 58.856 52.174 0.00 0.00 33.83 2.73
4152 7909 3.139770 GGAGGTCACCCATCCTAGTACTA 59.860 52.174 1.89 1.89 33.83 1.82
4153 7910 2.091222 GGAGGTCACCCATCCTAGTACT 60.091 54.545 0.00 0.00 33.83 2.73
4154 7911 2.091222 AGGAGGTCACCCATCCTAGTAC 60.091 54.545 2.60 0.00 36.91 2.73
4155 7912 2.091278 CAGGAGGTCACCCATCCTAGTA 60.091 54.545 4.27 0.00 36.69 1.82
4156 7913 1.019650 AGGAGGTCACCCATCCTAGT 58.980 55.000 2.60 0.00 36.91 2.57
4157 7914 1.418334 CAGGAGGTCACCCATCCTAG 58.582 60.000 4.27 0.00 36.69 3.02
4158 7915 0.031111 CCAGGAGGTCACCCATCCTA 60.031 60.000 4.27 0.00 36.69 2.94
4159 7916 1.307343 CCAGGAGGTCACCCATCCT 60.307 63.158 0.00 0.00 38.30 3.24
4160 7917 2.378634 CCCAGGAGGTCACCCATCC 61.379 68.421 0.00 0.00 0.00 3.51
4161 7918 0.914417 TTCCCAGGAGGTCACCCATC 60.914 60.000 0.00 0.00 36.75 3.51
4162 7919 0.916358 CTTCCCAGGAGGTCACCCAT 60.916 60.000 0.00 0.00 36.75 4.00
4163 7920 1.538876 CTTCCCAGGAGGTCACCCA 60.539 63.158 0.00 0.00 36.75 4.51
4164 7921 1.539124 ACTTCCCAGGAGGTCACCC 60.539 63.158 0.00 0.00 36.75 4.61
4165 7922 1.984020 GACTTCCCAGGAGGTCACC 59.016 63.158 20.66 0.00 46.32 4.02
4168 7925 0.615850 CAAGGACTTCCCAGGAGGTC 59.384 60.000 18.15 18.15 46.33 3.85
4169 7926 0.104409 ACAAGGACTTCCCAGGAGGT 60.104 55.000 0.31 0.31 37.15 3.85
4170 7927 0.326264 CACAAGGACTTCCCAGGAGG 59.674 60.000 0.00 0.00 37.41 4.30
4171 7928 1.352083 TCACAAGGACTTCCCAGGAG 58.648 55.000 0.00 0.00 37.41 3.69
4172 7929 1.814429 TTCACAAGGACTTCCCAGGA 58.186 50.000 0.00 0.00 37.41 3.86
4173 7930 2.508526 CTTTCACAAGGACTTCCCAGG 58.491 52.381 0.00 0.00 37.41 4.45
4189 7946 6.231951 GGTAGGCTAGATATGAAACCCTTTC 58.768 44.000 0.00 0.00 40.08 2.62
4190 7947 5.073280 GGGTAGGCTAGATATGAAACCCTTT 59.927 44.000 8.73 0.00 41.75 3.11
4191 7948 4.597940 GGGTAGGCTAGATATGAAACCCTT 59.402 45.833 8.73 0.00 41.75 3.95
4192 7949 4.168883 GGGTAGGCTAGATATGAAACCCT 58.831 47.826 8.73 0.00 41.75 4.34
4193 7950 3.263681 GGGGTAGGCTAGATATGAAACCC 59.736 52.174 7.65 7.65 43.82 4.11
4194 7951 3.908103 TGGGGTAGGCTAGATATGAAACC 59.092 47.826 0.00 0.00 0.00 3.27
4195 7952 5.071923 AGTTGGGGTAGGCTAGATATGAAAC 59.928 44.000 0.00 0.00 0.00 2.78
4196 7953 5.224441 AGTTGGGGTAGGCTAGATATGAAA 58.776 41.667 0.00 0.00 0.00 2.69
4197 7954 4.827789 AGTTGGGGTAGGCTAGATATGAA 58.172 43.478 0.00 0.00 0.00 2.57
4198 7955 4.487282 AGTTGGGGTAGGCTAGATATGA 57.513 45.455 0.00 0.00 0.00 2.15
4199 7956 4.348168 ACAAGTTGGGGTAGGCTAGATATG 59.652 45.833 7.96 0.00 0.00 1.78
4200 7957 4.567857 ACAAGTTGGGGTAGGCTAGATAT 58.432 43.478 7.96 0.00 0.00 1.63
4201 7958 4.003584 ACAAGTTGGGGTAGGCTAGATA 57.996 45.455 7.96 0.00 0.00 1.98
4202 7959 2.846950 ACAAGTTGGGGTAGGCTAGAT 58.153 47.619 7.96 0.00 0.00 1.98
4203 7960 2.337359 ACAAGTTGGGGTAGGCTAGA 57.663 50.000 7.96 0.00 0.00 2.43
4204 7961 3.081804 CAAACAAGTTGGGGTAGGCTAG 58.918 50.000 7.96 0.00 33.18 3.42
4205 7962 3.149005 CAAACAAGTTGGGGTAGGCTA 57.851 47.619 7.96 0.00 33.18 3.93
4206 7963 1.995376 CAAACAAGTTGGGGTAGGCT 58.005 50.000 7.96 0.00 33.18 4.58
4215 7972 5.213891 AGCCTTTTATCCCAAACAAGTTG 57.786 39.130 0.00 0.00 36.94 3.16
4216 7973 5.508994 CGAAGCCTTTTATCCCAAACAAGTT 60.509 40.000 0.00 0.00 0.00 2.66
4217 7974 4.022329 CGAAGCCTTTTATCCCAAACAAGT 60.022 41.667 0.00 0.00 0.00 3.16
4218 7975 4.022329 ACGAAGCCTTTTATCCCAAACAAG 60.022 41.667 0.00 0.00 0.00 3.16
4219 7976 3.892588 ACGAAGCCTTTTATCCCAAACAA 59.107 39.130 0.00 0.00 0.00 2.83
4220 7977 3.492337 ACGAAGCCTTTTATCCCAAACA 58.508 40.909 0.00 0.00 0.00 2.83
4221 7978 5.182570 ACTTACGAAGCCTTTTATCCCAAAC 59.817 40.000 0.00 0.00 0.00 2.93
4222 7979 5.318630 ACTTACGAAGCCTTTTATCCCAAA 58.681 37.500 0.00 0.00 0.00 3.28
4223 7980 4.913784 ACTTACGAAGCCTTTTATCCCAA 58.086 39.130 0.00 0.00 0.00 4.12
4224 7981 4.563140 ACTTACGAAGCCTTTTATCCCA 57.437 40.909 0.00 0.00 0.00 4.37
4225 7982 6.111382 ACTTACTTACGAAGCCTTTTATCCC 58.889 40.000 0.00 0.00 0.00 3.85
4226 7983 7.042858 GCTACTTACTTACGAAGCCTTTTATCC 60.043 40.741 0.00 0.00 0.00 2.59
4227 7984 7.490402 TGCTACTTACTTACGAAGCCTTTTATC 59.510 37.037 0.00 0.00 0.00 1.75
4228 7985 7.325694 TGCTACTTACTTACGAAGCCTTTTAT 58.674 34.615 0.00 0.00 0.00 1.40
4229 7986 6.690530 TGCTACTTACTTACGAAGCCTTTTA 58.309 36.000 0.00 0.00 0.00 1.52
4230 7987 5.544650 TGCTACTTACTTACGAAGCCTTTT 58.455 37.500 0.00 0.00 0.00 2.27
4231 7988 5.143376 TGCTACTTACTTACGAAGCCTTT 57.857 39.130 0.00 0.00 0.00 3.11
4232 7989 4.796038 TGCTACTTACTTACGAAGCCTT 57.204 40.909 0.00 0.00 0.00 4.35
4233 7990 4.645588 AGATGCTACTTACTTACGAAGCCT 59.354 41.667 0.00 0.00 0.00 4.58
4234 7991 4.740695 CAGATGCTACTTACTTACGAAGCC 59.259 45.833 0.00 0.00 0.00 4.35
4235 7992 4.207429 GCAGATGCTACTTACTTACGAAGC 59.793 45.833 0.00 0.00 38.21 3.86
4236 7993 5.340803 TGCAGATGCTACTTACTTACGAAG 58.659 41.667 6.35 0.00 42.66 3.79
4237 7994 5.105877 ACTGCAGATGCTACTTACTTACGAA 60.106 40.000 23.35 0.00 42.66 3.85
4238 7995 4.398358 ACTGCAGATGCTACTTACTTACGA 59.602 41.667 23.35 0.00 42.66 3.43
4239 7996 4.500837 CACTGCAGATGCTACTTACTTACG 59.499 45.833 23.35 0.00 42.66 3.18
4240 7997 4.268884 GCACTGCAGATGCTACTTACTTAC 59.731 45.833 23.35 0.00 42.66 2.34
4241 7998 4.433615 GCACTGCAGATGCTACTTACTTA 58.566 43.478 23.35 0.00 42.66 2.24
4242 7999 3.265791 GCACTGCAGATGCTACTTACTT 58.734 45.455 23.35 0.00 42.66 2.24
4243 8000 2.898705 GCACTGCAGATGCTACTTACT 58.101 47.619 23.35 0.00 42.66 2.24
4320 8077 5.334435 GGTTTCAACCGACAGTTAACTAC 57.666 43.478 8.04 4.96 39.66 2.73
4389 8162 5.356751 AGCTTAAAATCATGCCACGACAATA 59.643 36.000 0.00 0.00 0.00 1.90
4394 8167 4.513442 ACTAGCTTAAAATCATGCCACGA 58.487 39.130 0.00 0.00 0.00 4.35
4654 10923 8.676401 GGAATTAATTCATTTCCAAAACATGGG 58.324 33.333 25.55 0.00 42.91 4.00
4901 13709 2.313717 CTGGATTGCACGCGGTGATG 62.314 60.000 12.47 0.00 35.23 3.07
4950 13761 8.747538 AAAGGTACAAAACATGGGATACTATC 57.252 34.615 0.00 0.00 34.29 2.08
5088 14884 9.333750 GGACTTGGTCTCTTTTGGAACAATCTG 62.334 44.444 0.00 0.00 39.28 2.90
5160 14956 3.194329 GCTTGAATAGCCAGCCTTCTTTT 59.806 43.478 4.73 0.00 44.48 2.27
5933 21071 7.683578 TCAGGATGCAATAGCTTATAGTCATT 58.316 34.615 0.00 0.00 42.74 2.57
6192 26085 7.995463 TTAAACTGTTGTAGCATTTCCAAAC 57.005 32.000 0.00 0.00 0.00 2.93
7287 30608 0.535335 CTGGCATACGTACCCACACT 59.465 55.000 11.63 0.00 0.00 3.55
7322 30649 1.988107 ACATGGATTGGGTGAGTGAGT 59.012 47.619 0.00 0.00 0.00 3.41
7786 35845 0.526739 TGTCCTCGAACACACACACG 60.527 55.000 0.00 0.00 0.00 4.49
7795 39391 1.156736 CCCACACAATGTCCTCGAAC 58.843 55.000 0.00 0.00 0.00 3.95
7796 39392 1.001974 CTCCCACACAATGTCCTCGAA 59.998 52.381 0.00 0.00 0.00 3.71
7915 39511 5.772672 TGGTAAACATGGAAATACTGCTTGT 59.227 36.000 0.00 0.00 35.60 3.16
8394 40803 2.027377 CAGGCATTCCAAGAGTGAGACT 60.027 50.000 0.00 0.00 33.74 3.24
8398 40807 1.361204 TCCAGGCATTCCAAGAGTGA 58.639 50.000 0.00 0.00 33.74 3.41
8399 40808 2.431954 ATCCAGGCATTCCAAGAGTG 57.568 50.000 0.00 0.00 33.74 3.51
8401 40810 3.889815 TGTAATCCAGGCATTCCAAGAG 58.110 45.455 0.00 0.00 33.74 2.85
8404 40813 5.271598 AGAAATGTAATCCAGGCATTCCAA 58.728 37.500 0.00 0.00 32.38 3.53
8406 40815 8.814038 ATATAGAAATGTAATCCAGGCATTCC 57.186 34.615 0.00 0.00 32.38 3.01
8454 40863 7.419204 TCTAAACGTAAATGGACAAACCTTTG 58.581 34.615 0.00 0.00 43.62 2.77
8456 40865 7.754851 ATCTAAACGTAAATGGACAAACCTT 57.245 32.000 0.00 0.00 39.86 3.50
8485 41247 9.331282 GAGTGCTCCTATTTGTATTATGTTTCT 57.669 33.333 0.00 0.00 0.00 2.52
8490 41252 6.923508 TCACGAGTGCTCCTATTTGTATTATG 59.076 38.462 0.00 0.00 0.00 1.90
8491 41253 7.050970 TCACGAGTGCTCCTATTTGTATTAT 57.949 36.000 0.00 0.00 0.00 1.28
8495 41257 4.381612 CCTTCACGAGTGCTCCTATTTGTA 60.382 45.833 0.00 0.00 0.00 2.41
8502 41264 1.066573 CATTCCTTCACGAGTGCTCCT 60.067 52.381 0.00 0.00 0.00 3.69
8504 41266 2.370281 TCATTCCTTCACGAGTGCTC 57.630 50.000 0.00 0.00 0.00 4.26
8505 41267 2.417719 GTTCATTCCTTCACGAGTGCT 58.582 47.619 0.00 0.00 0.00 4.40
8506 41268 1.126846 CGTTCATTCCTTCACGAGTGC 59.873 52.381 0.00 0.00 34.49 4.40
8510 41272 1.671850 GCCTCGTTCATTCCTTCACGA 60.672 52.381 0.00 0.00 39.27 4.35
8511 41273 0.721718 GCCTCGTTCATTCCTTCACG 59.278 55.000 0.00 0.00 0.00 4.35
8512 41274 2.003301 GAGCCTCGTTCATTCCTTCAC 58.997 52.381 0.00 0.00 0.00 3.18
8514 41276 1.066143 TGGAGCCTCGTTCATTCCTTC 60.066 52.381 0.00 0.00 0.00 3.46
8515 41277 0.984230 TGGAGCCTCGTTCATTCCTT 59.016 50.000 0.00 0.00 0.00 3.36
8516 41278 0.539051 CTGGAGCCTCGTTCATTCCT 59.461 55.000 0.00 0.00 0.00 3.36
8517 41279 0.537188 TCTGGAGCCTCGTTCATTCC 59.463 55.000 0.00 0.00 0.00 3.01
8518 41280 1.472376 CCTCTGGAGCCTCGTTCATTC 60.472 57.143 0.00 0.00 0.00 2.67
8519 41281 0.539051 CCTCTGGAGCCTCGTTCATT 59.461 55.000 0.00 0.00 0.00 2.57
8520 41282 1.333636 CCCTCTGGAGCCTCGTTCAT 61.334 60.000 0.00 0.00 0.00 2.57
8522 41284 1.258445 TTCCCTCTGGAGCCTCGTTC 61.258 60.000 0.00 0.00 43.07 3.95
8523 41285 0.836400 TTTCCCTCTGGAGCCTCGTT 60.836 55.000 0.00 0.00 43.07 3.85
8525 41287 0.543749 ATTTTCCCTCTGGAGCCTCG 59.456 55.000 0.00 0.00 43.07 4.63
8526 41288 2.757314 CAAATTTTCCCTCTGGAGCCTC 59.243 50.000 0.00 0.00 43.07 4.70
8527 41289 2.110721 ACAAATTTTCCCTCTGGAGCCT 59.889 45.455 0.00 0.00 43.07 4.58
8529 41291 5.010282 TCTTACAAATTTTCCCTCTGGAGC 58.990 41.667 0.00 0.00 43.07 4.70
8530 41292 6.660949 ACATCTTACAAATTTTCCCTCTGGAG 59.339 38.462 0.00 0.00 43.07 3.86
8531 41293 6.552008 ACATCTTACAAATTTTCCCTCTGGA 58.448 36.000 0.00 0.00 39.54 3.86
8532 41294 6.840780 ACATCTTACAAATTTTCCCTCTGG 57.159 37.500 0.00 0.00 0.00 3.86
8534 41296 7.725844 AGACAACATCTTACAAATTTTCCCTCT 59.274 33.333 0.00 0.00 31.62 3.69
8550 41312 7.581213 TTTTCATACCACAAAGACAACATCT 57.419 32.000 0.00 0.00 40.46 2.90
8579 41341 4.559862 TTGTTTGGATGTGGTGGTTTTT 57.440 36.364 0.00 0.00 0.00 1.94
8580 41342 4.257731 GTTTGTTTGGATGTGGTGGTTTT 58.742 39.130 0.00 0.00 0.00 2.43
8583 41345 1.760029 GGTTTGTTTGGATGTGGTGGT 59.240 47.619 0.00 0.00 0.00 4.16
8585 41347 1.759445 TGGGTTTGTTTGGATGTGGTG 59.241 47.619 0.00 0.00 0.00 4.17
8586 41348 1.760029 GTGGGTTTGTTTGGATGTGGT 59.240 47.619 0.00 0.00 0.00 4.16
8587 41349 1.069978 GGTGGGTTTGTTTGGATGTGG 59.930 52.381 0.00 0.00 0.00 4.17
8588 41350 1.069978 GGGTGGGTTTGTTTGGATGTG 59.930 52.381 0.00 0.00 0.00 3.21
8589 41351 1.062505 AGGGTGGGTTTGTTTGGATGT 60.063 47.619 0.00 0.00 0.00 3.06
8590 41352 1.715785 AGGGTGGGTTTGTTTGGATG 58.284 50.000 0.00 0.00 0.00 3.51
8591 41353 2.225267 CCTAGGGTGGGTTTGTTTGGAT 60.225 50.000 0.00 0.00 0.00 3.41
8593 41355 1.146152 TCCTAGGGTGGGTTTGTTTGG 59.854 52.381 9.46 0.00 0.00 3.28
8594 41356 2.668144 TCCTAGGGTGGGTTTGTTTG 57.332 50.000 9.46 0.00 0.00 2.93
8595 41357 4.355889 ACTTATCCTAGGGTGGGTTTGTTT 59.644 41.667 9.46 0.00 0.00 2.83
8596 41358 3.920841 ACTTATCCTAGGGTGGGTTTGTT 59.079 43.478 9.46 0.00 0.00 2.83
8597 41359 3.522343 GACTTATCCTAGGGTGGGTTTGT 59.478 47.826 9.46 0.00 0.00 2.83
8598 41360 3.521937 TGACTTATCCTAGGGTGGGTTTG 59.478 47.826 9.46 0.00 0.00 2.93
8599 41361 3.810623 TGACTTATCCTAGGGTGGGTTT 58.189 45.455 9.46 0.00 0.00 3.27
8600 41362 3.502051 TGACTTATCCTAGGGTGGGTT 57.498 47.619 9.46 0.00 0.00 4.11
8601 41363 3.726837 ATGACTTATCCTAGGGTGGGT 57.273 47.619 9.46 5.13 0.00 4.51
8602 41364 4.905456 TGTAATGACTTATCCTAGGGTGGG 59.095 45.833 9.46 1.55 0.00 4.61
8603 41365 5.839063 TCTGTAATGACTTATCCTAGGGTGG 59.161 44.000 9.46 1.94 0.00 4.61
8604 41366 6.978674 TCTGTAATGACTTATCCTAGGGTG 57.021 41.667 9.46 0.00 0.00 4.61
8660 41422 9.875691 GTGCATTGATATGTATCTCTATACCAA 57.124 33.333 0.00 0.00 37.72 3.67
8661 41423 9.034800 TGTGCATTGATATGTATCTCTATACCA 57.965 33.333 0.00 0.00 37.72 3.25
8667 41429 7.389884 GGTTCATGTGCATTGATATGTATCTCT 59.610 37.037 3.47 0.00 34.12 3.10
8668 41430 7.173735 TGGTTCATGTGCATTGATATGTATCTC 59.826 37.037 3.47 0.00 34.12 2.75
8670 41432 7.080099 GTGGTTCATGTGCATTGATATGTATC 58.920 38.462 3.47 0.00 34.12 2.24
8671 41433 6.546772 TGTGGTTCATGTGCATTGATATGTAT 59.453 34.615 3.47 0.00 34.12 2.29
8672 41434 5.884792 TGTGGTTCATGTGCATTGATATGTA 59.115 36.000 3.47 0.00 34.12 2.29
8674 41436 5.251601 TGTGGTTCATGTGCATTGATATG 57.748 39.130 3.47 0.00 34.76 1.78
8675 41437 7.585579 TTATGTGGTTCATGTGCATTGATAT 57.414 32.000 3.47 0.00 37.91 1.63
8677 41439 5.918426 TTATGTGGTTCATGTGCATTGAT 57.082 34.783 3.47 0.00 37.91 2.57
8679 41441 5.292345 CCATTTATGTGGTTCATGTGCATTG 59.708 40.000 0.00 0.00 37.91 2.82
8681 41443 5.013568 CCATTTATGTGGTTCATGTGCAT 57.986 39.130 0.00 0.00 37.91 3.96
8682 41444 4.453177 CCATTTATGTGGTTCATGTGCA 57.547 40.909 0.00 0.00 37.91 4.57
8689 41451 9.188981 GCAAAACGCTTACCATTTATGTGGTTC 62.189 40.741 3.65 0.00 43.27 3.62
8691 41453 6.076032 GCAAAACGCTTACCATTTATGTGGT 61.076 40.000 3.83 3.83 45.73 4.16
8692 41454 4.326009 GCAAAACGCTTACCATTTATGTGG 59.674 41.667 0.00 0.00 40.59 4.17
8693 41455 5.434514 GCAAAACGCTTACCATTTATGTG 57.565 39.130 0.00 0.00 37.77 3.21
8707 41469 1.508632 TAGTGAGGTCAGCAAAACGC 58.491 50.000 0.00 0.00 42.91 4.84
8709 41471 4.278419 ACCAATTAGTGAGGTCAGCAAAAC 59.722 41.667 0.00 0.00 0.00 2.43
8710 41472 4.469657 ACCAATTAGTGAGGTCAGCAAAA 58.530 39.130 0.00 0.00 0.00 2.44
8711 41473 4.098914 ACCAATTAGTGAGGTCAGCAAA 57.901 40.909 0.00 0.00 0.00 3.68
8712 41474 3.788227 ACCAATTAGTGAGGTCAGCAA 57.212 42.857 0.00 0.00 0.00 3.91
8717 41479 1.742750 GCCCGACCAATTAGTGAGGTC 60.743 57.143 0.00 0.00 46.48 3.85
8718 41480 0.252197 GCCCGACCAATTAGTGAGGT 59.748 55.000 0.00 0.00 38.63 3.85
8719 41481 0.463833 GGCCCGACCAATTAGTGAGG 60.464 60.000 0.00 0.00 38.86 3.86
8720 41482 3.080647 GGCCCGACCAATTAGTGAG 57.919 57.895 0.00 0.00 38.86 3.51
8742 41504 0.178992 TTGCCAACTCACCCTGAAGG 60.179 55.000 0.00 0.00 43.78 3.46
8766 41920 5.067805 GGAGGAACAAGACATGTCAGTTTTT 59.932 40.000 26.96 20.59 42.99 1.94
8771 41925 3.260380 AGAGGAGGAACAAGACATGTCAG 59.740 47.826 27.02 20.24 42.99 3.51
8773 41927 3.513515 AGAGAGGAGGAACAAGACATGTC 59.486 47.826 18.47 18.47 42.99 3.06
8774 41928 3.513515 GAGAGAGGAGGAACAAGACATGT 59.486 47.826 0.00 0.00 46.82 3.21
8775 41929 3.768757 AGAGAGAGGAGGAACAAGACATG 59.231 47.826 0.00 0.00 0.00 3.21
8777 41931 3.426615 GAGAGAGAGGAGGAACAAGACA 58.573 50.000 0.00 0.00 0.00 3.41
8778 41932 2.758423 GGAGAGAGAGGAGGAACAAGAC 59.242 54.545 0.00 0.00 0.00 3.01
8780 41934 3.100207 AGGAGAGAGAGGAGGAACAAG 57.900 52.381 0.00 0.00 0.00 3.16
8782 41936 2.512056 CCTAGGAGAGAGAGGAGGAACA 59.488 54.545 1.05 0.00 31.45 3.18
8783 41937 2.751816 GCCTAGGAGAGAGAGGAGGAAC 60.752 59.091 14.75 0.00 31.45 3.62
8785 41939 1.145571 GCCTAGGAGAGAGAGGAGGA 58.854 60.000 14.75 0.00 31.45 3.71
8786 41940 0.850100 TGCCTAGGAGAGAGAGGAGG 59.150 60.000 14.75 0.00 31.45 4.30
8787 41941 2.978156 ATGCCTAGGAGAGAGAGGAG 57.022 55.000 14.75 0.00 31.45 3.69
8789 41943 3.303938 TGAAATGCCTAGGAGAGAGAGG 58.696 50.000 14.75 0.00 0.00 3.69
8790 41944 4.588106 TGATGAAATGCCTAGGAGAGAGAG 59.412 45.833 14.75 0.00 0.00 3.20
8792 41946 4.952071 TGATGAAATGCCTAGGAGAGAG 57.048 45.455 14.75 0.00 0.00 3.20
8793 41947 5.698741 TTTGATGAAATGCCTAGGAGAGA 57.301 39.130 14.75 0.00 0.00 3.10
8795 41949 7.982252 AGATATTTGATGAAATGCCTAGGAGA 58.018 34.615 14.75 0.00 33.63 3.71
8796 41950 7.881751 TGAGATATTTGATGAAATGCCTAGGAG 59.118 37.037 14.75 0.00 33.63 3.69
8797 41951 7.748677 TGAGATATTTGATGAAATGCCTAGGA 58.251 34.615 14.75 0.00 33.63 2.94
8798 41952 7.991084 TGAGATATTTGATGAAATGCCTAGG 57.009 36.000 3.67 3.67 33.63 3.02
8799 41953 9.011095 ACATGAGATATTTGATGAAATGCCTAG 57.989 33.333 0.00 0.00 33.63 3.02
8800 41954 8.929260 ACATGAGATATTTGATGAAATGCCTA 57.071 30.769 0.00 0.00 33.63 3.93
8801 41955 7.834881 ACATGAGATATTTGATGAAATGCCT 57.165 32.000 0.00 0.00 33.63 4.75
8802 41956 8.570488 TGTACATGAGATATTTGATGAAATGCC 58.430 33.333 0.00 0.00 33.63 4.40
8813 41967 9.270640 GCTTTCTCTGATGTACATGAGATATTT 57.729 33.333 22.89 0.00 34.96 1.40
8814 41968 7.877097 GGCTTTCTCTGATGTACATGAGATATT 59.123 37.037 22.89 0.00 34.96 1.28
8815 41969 7.015974 TGGCTTTCTCTGATGTACATGAGATAT 59.984 37.037 22.89 0.00 34.96 1.63
8817 41971 5.129980 TGGCTTTCTCTGATGTACATGAGAT 59.870 40.000 22.89 0.00 34.96 2.75
8818 41972 4.467438 TGGCTTTCTCTGATGTACATGAGA 59.533 41.667 21.61 21.61 34.00 3.27
8819 41973 4.763073 TGGCTTTCTCTGATGTACATGAG 58.237 43.478 14.43 14.99 0.00 2.90
8820 41974 4.824479 TGGCTTTCTCTGATGTACATGA 57.176 40.909 14.43 3.43 0.00 3.07
8822 41976 7.284034 CCTTAAATGGCTTTCTCTGATGTACAT 59.716 37.037 8.43 8.43 0.00 2.29
8823 41977 6.599244 CCTTAAATGGCTTTCTCTGATGTACA 59.401 38.462 0.00 0.00 0.00 2.90
8825 41979 6.957631 TCCTTAAATGGCTTTCTCTGATGTA 58.042 36.000 0.00 0.00 0.00 2.29
8826 41980 5.819991 TCCTTAAATGGCTTTCTCTGATGT 58.180 37.500 0.00 0.00 0.00 3.06
8828 41982 4.886489 GCTCCTTAAATGGCTTTCTCTGAT 59.114 41.667 0.00 0.00 0.00 2.90
8829 41983 4.265073 GCTCCTTAAATGGCTTTCTCTGA 58.735 43.478 0.00 0.00 0.00 3.27
8831 41985 3.625853 GGCTCCTTAAATGGCTTTCTCT 58.374 45.455 0.00 0.00 0.00 3.10
8832 41986 2.356069 CGGCTCCTTAAATGGCTTTCTC 59.644 50.000 0.00 0.00 0.00 2.87
8834 41988 2.092323 ACGGCTCCTTAAATGGCTTTC 58.908 47.619 0.00 0.00 0.00 2.62
8835 41989 1.818674 CACGGCTCCTTAAATGGCTTT 59.181 47.619 0.00 0.00 0.00 3.51
8836 41990 1.463674 CACGGCTCCTTAAATGGCTT 58.536 50.000 0.00 0.00 0.00 4.35
8837 41991 0.394352 CCACGGCTCCTTAAATGGCT 60.394 55.000 0.00 0.00 0.00 4.75
8838 41992 0.393808 TCCACGGCTCCTTAAATGGC 60.394 55.000 0.00 0.00 0.00 4.40
8839 41993 1.949525 CATCCACGGCTCCTTAAATGG 59.050 52.381 0.00 0.00 0.00 3.16
8840 41994 2.614057 GACATCCACGGCTCCTTAAATG 59.386 50.000 0.00 0.00 0.00 2.32
8842 41996 1.065709 GGACATCCACGGCTCCTTAAA 60.066 52.381 0.00 0.00 35.64 1.52
8843 41997 0.539986 GGACATCCACGGCTCCTTAA 59.460 55.000 0.00 0.00 35.64 1.85
8844 41998 1.335132 GGGACATCCACGGCTCCTTA 61.335 60.000 0.00 0.00 37.91 2.69
8847 42001 3.083997 AGGGACATCCACGGCTCC 61.084 66.667 0.00 0.00 38.24 4.70
8850 42004 1.524621 CATGAGGGACATCCACGGC 60.525 63.158 0.00 0.00 37.07 5.68
8851 42005 1.146930 CCATGAGGGACATCCACGG 59.853 63.158 0.00 0.00 40.01 4.94
8852 42006 0.105593 CTCCATGAGGGACATCCACG 59.894 60.000 0.00 0.00 42.15 4.94
8854 42008 1.689243 CGCTCCATGAGGGACATCCA 61.689 60.000 0.00 0.00 43.87 3.41
8856 42010 1.070445 CCGCTCCATGAGGGACATC 59.930 63.158 9.47 0.00 43.87 3.06
8857 42011 3.234349 CCGCTCCATGAGGGACAT 58.766 61.111 9.47 0.00 43.87 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.