Multiple sequence alignment - TraesCS3D01G519500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G519500 chr3D 100.000 3218 0 0 1 3218 602262555 602259338 0.000000e+00 5943.0
1 TraesCS3D01G519500 chr3D 78.888 1241 210 37 1019 2236 602235180 602236391 0.000000e+00 793.0
2 TraesCS3D01G519500 chr3D 79.942 1027 163 26 1238 2241 602210864 602211870 0.000000e+00 715.0
3 TraesCS3D01G519500 chr3D 81.106 434 75 4 1835 2268 597300787 597300361 1.110000e-89 340.0
4 TraesCS3D01G519500 chr3A 89.661 2215 139 33 948 3096 731844357 731842167 0.000000e+00 2739.0
5 TraesCS3D01G519500 chr3A 94.891 1468 57 9 909 2362 731894475 731893012 0.000000e+00 2279.0
6 TraesCS3D01G519500 chr3A 94.138 853 33 6 2369 3218 731892848 731892010 0.000000e+00 1282.0
7 TraesCS3D01G519500 chr3A 79.864 1326 215 34 1019 2332 730851579 730850294 0.000000e+00 922.0
8 TraesCS3D01G519500 chr3A 79.171 989 157 32 1325 2277 730905275 730904300 9.730000e-180 640.0
9 TraesCS3D01G519500 chr3A 87.228 368 43 3 966 1333 730908439 730908076 1.790000e-112 416.0
10 TraesCS3D01G519500 chr3A 85.612 139 20 0 2415 2553 730850129 730849991 2.590000e-31 147.0
11 TraesCS3D01G519500 chr5B 92.076 896 58 3 9 892 496987148 496988042 0.000000e+00 1249.0
12 TraesCS3D01G519500 chr5B 73.579 598 114 26 1720 2298 672823195 672822623 4.240000e-44 189.0
13 TraesCS3D01G519500 chr6D 88.098 899 93 5 9 893 455463640 455464538 0.000000e+00 1055.0
14 TraesCS3D01G519500 chr6A 87.248 894 93 6 9 890 466845486 466846370 0.000000e+00 1000.0
15 TraesCS3D01G519500 chr6A 84.770 893 123 6 9 890 583767866 583768756 0.000000e+00 883.0
16 TraesCS3D01G519500 chr7A 78.723 1316 228 36 1022 2298 11230329 11229027 0.000000e+00 832.0
17 TraesCS3D01G519500 chr7A 76.061 848 146 32 1428 2242 11311820 11310997 3.890000e-104 388.0
18 TraesCS3D01G519500 chr7A 79.130 575 110 7 1731 2298 11345583 11345012 3.890000e-104 388.0
19 TraesCS3D01G519500 chr7A 84.739 249 36 2 1418 1665 11346089 11345842 6.890000e-62 248.0
20 TraesCS3D01G519500 chr3B 90.476 609 55 3 1755 2362 809464312 809463706 0.000000e+00 800.0
21 TraesCS3D01G519500 chr3B 87.183 671 72 10 966 1626 809237463 809236797 0.000000e+00 750.0
22 TraesCS3D01G519500 chr3B 84.098 654 60 22 2586 3218 809463252 809462622 2.760000e-165 592.0
23 TraesCS3D01G519500 chr3B 86.626 486 58 6 948 1431 809510265 809509785 6.110000e-147 531.0
24 TraesCS3D01G519500 chr3B 93.750 336 21 0 968 1303 809347754 809348089 3.700000e-139 505.0
25 TraesCS3D01G519500 chr3B 86.854 426 36 6 1929 2351 809509777 809509369 2.930000e-125 459.0
26 TraesCS3D01G519500 chr3B 97.026 269 8 0 2948 3216 809503028 809502760 1.360000e-123 453.0
27 TraesCS3D01G519500 chr3B 87.037 378 36 7 2611 2977 809503409 809503034 6.420000e-112 414.0
28 TraesCS3D01G519500 chr3B 74.611 772 176 15 111 874 20478782 20478023 4.000000e-84 322.0
29 TraesCS3D01G519500 chr3B 79.027 329 58 5 1957 2277 809348090 809348415 6.990000e-52 215.0
30 TraesCS3D01G519500 chr3B 93.706 143 8 1 2416 2558 809463466 809463325 2.510000e-51 213.0
31 TraesCS3D01G519500 chr3B 86.224 196 16 6 2369 2553 809509192 809508997 5.440000e-48 202.0
32 TraesCS3D01G519500 chr3B 94.286 35 2 0 224 258 11063584 11063618 2.000000e-03 54.7
33 TraesCS3D01G519500 chr7B 76.726 1289 236 46 1052 2299 750116588 750115323 0.000000e+00 660.0
34 TraesCS3D01G519500 chr7D 77.129 1198 223 35 1070 2242 11928845 11927674 0.000000e+00 647.0
35 TraesCS3D01G519500 chr7D 75.671 1266 240 37 1016 2227 26760017 26758766 1.300000e-158 569.0
36 TraesCS3D01G519500 chr7D 79.716 493 78 13 1022 1497 11727506 11727019 1.430000e-88 337.0
37 TraesCS3D01G519500 chr7D 91.026 78 7 0 2571 2648 12045547 12045470 4.390000e-19 106.0
38 TraesCS3D01G519500 chr4A 76.553 853 139 39 1422 2242 726073342 726074165 8.310000e-111 411.0
39 TraesCS3D01G519500 chr4A 76.371 529 103 17 1720 2237 725864869 725865386 6.850000e-67 265.0
40 TraesCS3D01G519500 chr4A 79.926 269 47 5 2025 2286 726064720 726064988 1.180000e-44 191.0
41 TraesCS3D01G519500 chr4D 74.622 859 178 25 42 874 307265147 307265991 3.070000e-90 342.0
42 TraesCS3D01G519500 chr1A 90.984 244 22 0 631 874 17829362 17829605 2.390000e-86 329.0
43 TraesCS3D01G519500 chr5D 73.508 687 154 24 206 874 485163537 485164213 5.370000e-58 235.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G519500 chr3D 602259338 602262555 3217 True 5943.000000 5943 100.000000 1 3218 1 chr3D.!!$R2 3217
1 TraesCS3D01G519500 chr3D 602235180 602236391 1211 False 793.000000 793 78.888000 1019 2236 1 chr3D.!!$F2 1217
2 TraesCS3D01G519500 chr3D 602210864 602211870 1006 False 715.000000 715 79.942000 1238 2241 1 chr3D.!!$F1 1003
3 TraesCS3D01G519500 chr3A 731842167 731844357 2190 True 2739.000000 2739 89.661000 948 3096 1 chr3A.!!$R1 2148
4 TraesCS3D01G519500 chr3A 731892010 731894475 2465 True 1780.500000 2279 94.514500 909 3218 2 chr3A.!!$R4 2309
5 TraesCS3D01G519500 chr3A 730849991 730851579 1588 True 534.500000 922 82.738000 1019 2553 2 chr3A.!!$R2 1534
6 TraesCS3D01G519500 chr3A 730904300 730908439 4139 True 528.000000 640 83.199500 966 2277 2 chr3A.!!$R3 1311
7 TraesCS3D01G519500 chr5B 496987148 496988042 894 False 1249.000000 1249 92.076000 9 892 1 chr5B.!!$F1 883
8 TraesCS3D01G519500 chr6D 455463640 455464538 898 False 1055.000000 1055 88.098000 9 893 1 chr6D.!!$F1 884
9 TraesCS3D01G519500 chr6A 466845486 466846370 884 False 1000.000000 1000 87.248000 9 890 1 chr6A.!!$F1 881
10 TraesCS3D01G519500 chr6A 583767866 583768756 890 False 883.000000 883 84.770000 9 890 1 chr6A.!!$F2 881
11 TraesCS3D01G519500 chr7A 11229027 11230329 1302 True 832.000000 832 78.723000 1022 2298 1 chr7A.!!$R1 1276
12 TraesCS3D01G519500 chr7A 11310997 11311820 823 True 388.000000 388 76.061000 1428 2242 1 chr7A.!!$R2 814
13 TraesCS3D01G519500 chr7A 11345012 11346089 1077 True 318.000000 388 81.934500 1418 2298 2 chr7A.!!$R3 880
14 TraesCS3D01G519500 chr3B 809236797 809237463 666 True 750.000000 750 87.183000 966 1626 1 chr3B.!!$R2 660
15 TraesCS3D01G519500 chr3B 809462622 809464312 1690 True 535.000000 800 89.426667 1755 3218 3 chr3B.!!$R3 1463
16 TraesCS3D01G519500 chr3B 809502760 809503409 649 True 433.500000 453 92.031500 2611 3216 2 chr3B.!!$R4 605
17 TraesCS3D01G519500 chr3B 809508997 809510265 1268 True 397.333333 531 86.568000 948 2553 3 chr3B.!!$R5 1605
18 TraesCS3D01G519500 chr3B 809347754 809348415 661 False 360.000000 505 86.388500 968 2277 2 chr3B.!!$F2 1309
19 TraesCS3D01G519500 chr3B 20478023 20478782 759 True 322.000000 322 74.611000 111 874 1 chr3B.!!$R1 763
20 TraesCS3D01G519500 chr7B 750115323 750116588 1265 True 660.000000 660 76.726000 1052 2299 1 chr7B.!!$R1 1247
21 TraesCS3D01G519500 chr7D 11927674 11928845 1171 True 647.000000 647 77.129000 1070 2242 1 chr7D.!!$R2 1172
22 TraesCS3D01G519500 chr7D 26758766 26760017 1251 True 569.000000 569 75.671000 1016 2227 1 chr7D.!!$R4 1211
23 TraesCS3D01G519500 chr4A 726073342 726074165 823 False 411.000000 411 76.553000 1422 2242 1 chr4A.!!$F3 820
24 TraesCS3D01G519500 chr4A 725864869 725865386 517 False 265.000000 265 76.371000 1720 2237 1 chr4A.!!$F1 517
25 TraesCS3D01G519500 chr4D 307265147 307265991 844 False 342.000000 342 74.622000 42 874 1 chr4D.!!$F1 832
26 TraesCS3D01G519500 chr5D 485163537 485164213 676 False 235.000000 235 73.508000 206 874 1 chr5D.!!$F1 668


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
75 76 1.001641 GGTGCTGCAGATTCCTGGT 60.002 57.895 20.43 0.0 40.72 4.00 F
1653 4562 0.879765 TCGTCTTCTCCTCGTTGGAC 59.120 55.000 0.00 0.0 40.56 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1715 4835 1.118356 ACGATCTGAGAGCCCATCCC 61.118 60.0 0.00 0.0 0.0 3.85 R
2829 6299 2.743636 TGAGGCTAGCAAGTGTGTAC 57.256 50.0 18.24 0.0 0.0 2.90 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 1.656594 CCGCAACATGTCGAATTCGTA 59.343 47.619 25.93 17.01 40.80 3.43
75 76 1.001641 GGTGCTGCAGATTCCTGGT 60.002 57.895 20.43 0.00 40.72 4.00
289 303 1.120530 GGAGATCTACCAAAGCCCGA 58.879 55.000 0.00 0.00 0.00 5.14
345 359 4.422073 TGAATTGGCTCTACTACCATGG 57.578 45.455 11.19 11.19 35.42 3.66
350 364 2.292918 TGGCTCTACTACCATGGAAGGT 60.293 50.000 21.47 15.46 45.72 3.50
446 470 1.739466 GGATGCAGCAATCTCGAAACA 59.261 47.619 3.51 0.00 0.00 2.83
488 512 1.664321 GCAGTATGTCGGGACGGAGT 61.664 60.000 0.00 0.00 46.99 3.85
503 527 2.176889 CGGAGTAGGGAACTTCTTGGA 58.823 52.381 0.00 0.00 43.67 3.53
600 624 4.300803 CTCTTGCAGCTGATCTACATCTC 58.699 47.826 20.43 0.00 0.00 2.75
680 704 2.628657 ACGGAGGAAGATATGGTGCTAC 59.371 50.000 0.00 0.00 0.00 3.58
711 743 5.049336 CGAGATTAAAGCTAGATCGTCCTCA 60.049 44.000 0.00 0.00 0.00 3.86
714 746 7.375053 AGATTAAAGCTAGATCGTCCTCATTC 58.625 38.462 0.00 0.00 0.00 2.67
779 811 4.572389 CGCTGATAGATTAGCCAAGTTTGT 59.428 41.667 1.10 0.00 36.18 2.83
780 812 5.503031 CGCTGATAGATTAGCCAAGTTTGTG 60.503 44.000 1.10 0.00 36.18 3.33
815 847 1.296715 GGAGGCACGTCTGGATGTT 59.703 57.895 0.00 0.00 0.00 2.71
940 973 9.157104 TCCCCGCTCAAAAATAAAATAAAATTC 57.843 29.630 0.00 0.00 0.00 2.17
1308 1367 2.364317 TGCTCCTCCTTCCTCCCG 60.364 66.667 0.00 0.00 0.00 5.14
1431 4326 1.583054 GCCTCCAGTACCGCTATTTG 58.417 55.000 0.00 0.00 0.00 2.32
1653 4562 0.879765 TCGTCTTCTCCTCGTTGGAC 59.120 55.000 0.00 0.00 40.56 4.02
1699 4801 1.079266 CTGTGGAGTGCTCAGGCTC 60.079 63.158 5.86 0.00 39.59 4.70
1715 4835 0.322008 GCTCCACTTGAAGACCCCAG 60.322 60.000 0.00 0.00 0.00 4.45
1908 5048 0.037326 TCGGAATGCTCGCTGAAGTT 60.037 50.000 0.00 0.00 0.00 2.66
1947 5090 2.537633 ATGACCCATGTTGGCTGAAT 57.462 45.000 0.00 0.00 35.79 2.57
2333 5525 3.059352 TCTTTTTCCACTCTGCCTAGC 57.941 47.619 0.00 0.00 0.00 3.42
2366 5579 9.654417 GTTCGCATTACGGTTAATTATTTATGT 57.346 29.630 0.00 0.00 43.89 2.29
2367 5580 9.866936 TTCGCATTACGGTTAATTATTTATGTC 57.133 29.630 0.00 0.00 43.89 3.06
2562 5961 2.317040 TCAGTAGTATACAGCAGCCCC 58.683 52.381 5.50 0.00 46.26 5.80
2602 6050 7.562454 TTTTCGGTTGTCTGTAGATTTTCTT 57.438 32.000 0.00 0.00 0.00 2.52
2829 6299 7.974482 TGCTGTATCATATCCTTTCTTCATG 57.026 36.000 0.00 0.00 0.00 3.07
2860 6330 3.969976 TGCTAGCCTCATTATTGTCTCCT 59.030 43.478 13.29 0.00 0.00 3.69
2861 6331 4.039730 TGCTAGCCTCATTATTGTCTCCTC 59.960 45.833 13.29 0.00 0.00 3.71
2862 6332 4.283212 GCTAGCCTCATTATTGTCTCCTCT 59.717 45.833 2.29 0.00 0.00 3.69
2863 6333 4.686191 AGCCTCATTATTGTCTCCTCTG 57.314 45.455 0.00 0.00 0.00 3.35
2864 6334 4.293494 AGCCTCATTATTGTCTCCTCTGA 58.707 43.478 0.00 0.00 0.00 3.27
2865 6335 4.718774 AGCCTCATTATTGTCTCCTCTGAA 59.281 41.667 0.00 0.00 0.00 3.02
2866 6336 5.190528 AGCCTCATTATTGTCTCCTCTGAAA 59.809 40.000 0.00 0.00 0.00 2.69
2999 6515 7.609918 TCTTATCTTATAGACTCTAGGCTGCTG 59.390 40.741 0.00 0.00 0.00 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.544691 GGTGAGCTCGAACAGTAGGAA 59.455 52.381 9.64 0.00 0.00 3.36
2 3 1.174783 GGTGAGCTCGAACAGTAGGA 58.825 55.000 9.64 0.00 0.00 2.94
3 4 0.179161 CGGTGAGCTCGAACAGTAGG 60.179 60.000 9.64 0.00 0.00 3.18
4 5 0.798771 GCGGTGAGCTCGAACAGTAG 60.799 60.000 9.64 0.00 44.04 2.57
5 6 1.211969 GCGGTGAGCTCGAACAGTA 59.788 57.895 9.64 0.00 44.04 2.74
6 7 2.049063 GCGGTGAGCTCGAACAGT 60.049 61.111 9.64 0.00 44.04 3.55
75 76 1.608542 GCATTCCAAAAGTGCATGGCA 60.609 47.619 0.00 0.00 38.68 4.92
87 88 1.140852 CCGGGACATAGAGCATTCCAA 59.859 52.381 0.00 0.00 0.00 3.53
289 303 3.188460 GTGATAAACTGATGTGTTGCCGT 59.812 43.478 0.00 0.00 0.00 5.68
345 359 2.095718 GGTCGTTGATTGCTTCACCTTC 60.096 50.000 0.00 0.00 32.84 3.46
350 364 1.071542 TGGAGGTCGTTGATTGCTTCA 59.928 47.619 0.00 0.00 0.00 3.02
446 470 2.911143 CGGCTCCCCTTGTATGCT 59.089 61.111 0.00 0.00 0.00 3.79
488 512 4.618920 GAACTGTCCAAGAAGTTCCCTA 57.381 45.455 0.00 0.00 44.24 3.53
503 527 3.234353 TGGACTGTCAGATCTGAACTGT 58.766 45.455 26.70 25.08 41.85 3.55
512 536 1.841919 TGATGCCATGGACTGTCAGAT 59.158 47.619 18.40 0.00 0.00 2.90
513 537 1.278537 TGATGCCATGGACTGTCAGA 58.721 50.000 18.40 0.00 0.00 3.27
600 624 8.939201 AGTCAGAAGCGATGATAATATTATGG 57.061 34.615 12.74 1.33 0.00 2.74
680 704 5.201713 TCTAGCTTTAATCTCGGTGATGG 57.798 43.478 0.00 0.00 35.21 3.51
779 811 4.689705 GCCTCCCTTGATCCAATGAATACA 60.690 45.833 0.00 0.00 0.00 2.29
780 812 3.823304 GCCTCCCTTGATCCAATGAATAC 59.177 47.826 0.00 0.00 0.00 1.89
815 847 4.676109 ACAAAAAGGATCATGTGGGATCA 58.324 39.130 5.63 0.00 44.38 2.92
892 925 3.508793 ACAGGCAAATGGATGTCTCAAAG 59.491 43.478 0.00 0.00 31.57 2.77
893 926 3.499338 ACAGGCAAATGGATGTCTCAAA 58.501 40.909 0.00 0.00 31.57 2.69
894 927 3.084039 GACAGGCAAATGGATGTCTCAA 58.916 45.455 0.00 0.00 39.15 3.02
895 928 2.618816 GGACAGGCAAATGGATGTCTCA 60.619 50.000 4.39 0.00 41.40 3.27
896 929 2.019984 GGACAGGCAAATGGATGTCTC 58.980 52.381 4.39 0.00 41.40 3.36
897 930 1.341383 GGGACAGGCAAATGGATGTCT 60.341 52.381 4.39 0.00 41.40 3.41
898 931 1.106285 GGGACAGGCAAATGGATGTC 58.894 55.000 0.00 0.00 41.03 3.06
899 932 0.324645 GGGGACAGGCAAATGGATGT 60.325 55.000 0.00 0.00 0.00 3.06
900 933 1.386525 CGGGGACAGGCAAATGGATG 61.387 60.000 0.00 0.00 0.00 3.51
901 934 1.076777 CGGGGACAGGCAAATGGAT 60.077 57.895 0.00 0.00 0.00 3.41
902 935 2.354729 CGGGGACAGGCAAATGGA 59.645 61.111 0.00 0.00 0.00 3.41
903 936 3.451894 GCGGGGACAGGCAAATGG 61.452 66.667 0.00 0.00 0.00 3.16
904 937 2.361610 AGCGGGGACAGGCAAATG 60.362 61.111 0.00 0.00 0.00 2.32
905 938 2.044946 GAGCGGGGACAGGCAAAT 60.045 61.111 0.00 0.00 0.00 2.32
906 939 2.632602 TTTGAGCGGGGACAGGCAAA 62.633 55.000 0.00 0.00 0.00 3.68
907 940 2.632602 TTTTGAGCGGGGACAGGCAA 62.633 55.000 0.00 0.00 0.00 4.52
1308 1367 2.436115 GTAAGGCTGGCGGTGGAC 60.436 66.667 0.00 0.00 0.00 4.02
1653 4562 1.377725 AAGAGAATGCCACTGCCCG 60.378 57.895 0.00 0.00 36.33 6.13
1699 4801 1.133809 TCCCTGGGGTCTTCAAGTGG 61.134 60.000 14.00 0.00 36.47 4.00
1715 4835 1.118356 ACGATCTGAGAGCCCATCCC 61.118 60.000 0.00 0.00 0.00 3.85
1908 5048 7.936847 GGGTCATATATGTTGTCCTTGTCATAA 59.063 37.037 12.42 0.00 0.00 1.90
2005 5150 3.242518 CAAGCAGAACAACATGATGCAG 58.757 45.455 0.00 0.00 39.34 4.41
2313 5505 2.639839 AGCTAGGCAGAGTGGAAAAAGA 59.360 45.455 0.00 0.00 0.00 2.52
2333 5525 6.578020 TTAACCGTAATGCGAACTATCAAG 57.422 37.500 0.00 0.00 44.77 3.02
2562 5961 4.202212 ACCGAAAATCAACTTTTCCCCTTG 60.202 41.667 5.19 0.00 46.67 3.61
2725 6177 8.495949 CAACTCTTTCGTTGTTATATGTCTTGT 58.504 33.333 0.00 0.00 39.45 3.16
2742 6194 7.183580 GAGCATCCATGTATACAACTCTTTC 57.816 40.000 10.14 0.00 0.00 2.62
2829 6299 2.743636 TGAGGCTAGCAAGTGTGTAC 57.256 50.000 18.24 0.00 0.00 2.90
2860 6330 5.046087 TGAAGAGGAAGATGCAGATTTCAGA 60.046 40.000 0.00 0.00 0.00 3.27
2861 6331 5.183969 TGAAGAGGAAGATGCAGATTTCAG 58.816 41.667 0.00 0.00 0.00 3.02
2862 6332 5.169992 TGAAGAGGAAGATGCAGATTTCA 57.830 39.130 0.00 0.00 0.00 2.69
2863 6333 5.448904 GCTTGAAGAGGAAGATGCAGATTTC 60.449 44.000 0.00 0.00 0.00 2.17
2864 6334 4.398673 GCTTGAAGAGGAAGATGCAGATTT 59.601 41.667 0.00 0.00 0.00 2.17
2865 6335 3.946558 GCTTGAAGAGGAAGATGCAGATT 59.053 43.478 0.00 0.00 0.00 2.40
2866 6336 3.200385 AGCTTGAAGAGGAAGATGCAGAT 59.800 43.478 0.00 0.00 0.00 2.90
2999 6515 8.190122 TGAAATTTCTATGTGTGCATATGGTTC 58.810 33.333 18.64 0.00 37.01 3.62



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.