Multiple sequence alignment - TraesCS3D01G518000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G518000 chr3D 100.000 2407 0 0 1 2407 600654220 600656626 0.000000e+00 4446.0
1 TraesCS3D01G518000 chr3D 84.000 700 52 30 859 1544 600665403 600666056 3.400000e-173 617.0
2 TraesCS3D01G518000 chr3D 83.256 215 24 9 463 675 600664969 600665173 1.140000e-43 187.0
3 TraesCS3D01G518000 chr3D 100.000 30 0 0 255 284 600664271 600664300 3.340000e-04 56.5
4 TraesCS3D01G518000 chr3A 92.561 1425 60 25 997 2407 730085759 730087151 0.000000e+00 2002.0
5 TraesCS3D01G518000 chr3A 92.147 624 27 12 1372 1987 730006203 730006812 0.000000e+00 861.0
6 TraesCS3D01G518000 chr3A 92.147 624 27 12 1372 1987 730469226 730468617 0.000000e+00 861.0
7 TraesCS3D01G518000 chr3A 79.693 1305 146 53 745 1993 730091791 730093032 0.000000e+00 832.0
8 TraesCS3D01G518000 chr3A 91.438 619 32 10 1372 1983 730026245 730026849 0.000000e+00 830.0
9 TraesCS3D01G518000 chr3A 91.318 622 33 11 1372 1986 730448658 730448051 0.000000e+00 830.0
10 TraesCS3D01G518000 chr3A 79.647 1302 147 52 745 1993 730463071 730464307 0.000000e+00 828.0
11 TraesCS3D01G518000 chr3A 96.056 431 16 1 1557 1986 730097654 730097224 0.000000e+00 701.0
12 TraesCS3D01G518000 chr3A 81.207 878 87 35 753 1615 730012407 730011593 9.390000e-179 636.0
13 TraesCS3D01G518000 chr3A 81.207 878 87 35 753 1615 730032251 730031437 9.390000e-179 636.0
14 TraesCS3D01G518000 chr3A 81.081 888 88 32 745 1615 730590852 730591676 9.390000e-179 636.0
15 TraesCS3D01G518000 chr3A 82.156 807 79 30 823 1615 730442715 730443470 1.210000e-177 632.0
16 TraesCS3D01G518000 chr3A 83.871 155 8 9 738 879 730085513 730085663 5.400000e-27 132.0
17 TraesCS3D01G518000 chr3A 77.835 194 27 9 2218 2407 730443894 730444075 3.270000e-19 106.0
18 TraesCS3D01G518000 chr3A 77.500 200 27 10 2214 2407 730011177 730010990 1.180000e-18 104.0
19 TraesCS3D01G518000 chr3A 77.500 200 27 10 2214 2407 730031018 730030831 1.180000e-18 104.0
20 TraesCS3D01G518000 chr3A 77.500 200 27 10 2214 2407 730464310 730464497 1.180000e-18 104.0
21 TraesCS3D01G518000 chr3A 77.500 200 27 10 2214 2407 730592092 730592279 1.180000e-18 104.0
22 TraesCS3D01G518000 chr3A 80.405 148 15 8 2262 2407 730093087 730093222 1.520000e-17 100.0
23 TraesCS3D01G518000 chr3A 100.000 32 0 0 255 286 730090903 730090934 2.580000e-05 60.2
24 TraesCS3D01G518000 chr3B 92.346 797 33 14 738 1518 808019443 808020227 0.000000e+00 1109.0
25 TraesCS3D01G518000 chr3B 94.568 718 36 2 1515 2231 697706297 697707012 0.000000e+00 1107.0
26 TraesCS3D01G518000 chr3B 84.191 816 52 34 738 1518 697682992 697683765 0.000000e+00 721.0
27 TraesCS3D01G518000 chrUn 92.308 624 26 12 1372 1987 267997435 267996826 0.000000e+00 867.0
28 TraesCS3D01G518000 chrUn 91.438 619 32 10 1372 1983 317181894 317182498 0.000000e+00 830.0
29 TraesCS3D01G518000 chrUn 85.226 643 55 23 823 1457 358203047 358203657 2.030000e-175 625.0
30 TraesCS3D01G518000 chr5D 87.432 183 18 5 2038 2215 462454618 462454800 3.140000e-49 206.0
31 TraesCS3D01G518000 chr7D 85.955 178 18 5 2043 2216 585665838 585666012 1.470000e-42 183.0
32 TraesCS3D01G518000 chr7D 84.530 181 20 6 2042 2217 575899167 575898990 3.180000e-39 172.0
33 TraesCS3D01G518000 chr7B 84.946 186 23 4 2035 2216 656285487 656285671 1.470000e-42 183.0
34 TraesCS3D01G518000 chr7B 83.978 181 21 5 2036 2209 507139779 507139600 1.480000e-37 167.0
35 TraesCS3D01G518000 chr6D 84.865 185 23 3 2037 2216 388209929 388209745 5.290000e-42 182.0
36 TraesCS3D01G518000 chr4B 85.246 183 19 6 2038 2216 27243824 27243646 5.290000e-42 182.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G518000 chr3D 600654220 600656626 2406 False 4446.000000 4446 100.000000 1 2407 1 chr3D.!!$F1 2406
1 TraesCS3D01G518000 chr3D 600664271 600666056 1785 False 286.833333 617 89.085333 255 1544 3 chr3D.!!$F2 1289
2 TraesCS3D01G518000 chr3A 730006203 730006812 609 False 861.000000 861 92.147000 1372 1987 1 chr3A.!!$F1 615
3 TraesCS3D01G518000 chr3A 730468617 730469226 609 True 861.000000 861 92.147000 1372 1987 1 chr3A.!!$R3 615
4 TraesCS3D01G518000 chr3A 730026245 730026849 604 False 830.000000 830 91.438000 1372 1983 1 chr3A.!!$F2 611
5 TraesCS3D01G518000 chr3A 730448051 730448658 607 True 830.000000 830 91.318000 1372 1986 1 chr3A.!!$R2 614
6 TraesCS3D01G518000 chr3A 730085513 730093222 7709 False 625.240000 2002 87.306000 255 2407 5 chr3A.!!$F3 2152
7 TraesCS3D01G518000 chr3A 730463071 730464497 1426 False 466.000000 828 78.573500 745 2407 2 chr3A.!!$F5 1662
8 TraesCS3D01G518000 chr3A 730010990 730012407 1417 True 370.000000 636 79.353500 753 2407 2 chr3A.!!$R4 1654
9 TraesCS3D01G518000 chr3A 730030831 730032251 1420 True 370.000000 636 79.353500 753 2407 2 chr3A.!!$R5 1654
10 TraesCS3D01G518000 chr3A 730590852 730592279 1427 False 370.000000 636 79.290500 745 2407 2 chr3A.!!$F6 1662
11 TraesCS3D01G518000 chr3A 730442715 730444075 1360 False 369.000000 632 79.995500 823 2407 2 chr3A.!!$F4 1584
12 TraesCS3D01G518000 chr3B 808019443 808020227 784 False 1109.000000 1109 92.346000 738 1518 1 chr3B.!!$F3 780
13 TraesCS3D01G518000 chr3B 697706297 697707012 715 False 1107.000000 1107 94.568000 1515 2231 1 chr3B.!!$F2 716
14 TraesCS3D01G518000 chr3B 697682992 697683765 773 False 721.000000 721 84.191000 738 1518 1 chr3B.!!$F1 780
15 TraesCS3D01G518000 chrUn 267996826 267997435 609 True 867.000000 867 92.308000 1372 1987 1 chrUn.!!$R1 615
16 TraesCS3D01G518000 chrUn 317181894 317182498 604 False 830.000000 830 91.438000 1372 1983 1 chrUn.!!$F1 611
17 TraesCS3D01G518000 chrUn 358203047 358203657 610 False 625.000000 625 85.226000 823 1457 1 chrUn.!!$F2 634

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
160 161 0.179000 CTGCTACCGGCTCCATTTCT 59.821 55.0 0.00 0.0 42.39 2.52 F
344 5481 0.179034 TTTTTGCATGGCGGGCTTTT 60.179 45.0 2.38 0.0 0.00 2.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1346 7140 0.464036 TCTTCTTGTGGTGCTCGTGT 59.536 50.0 0.0 0.0 0.00 4.49 R
1586 7422 0.819582 GGAGATGTGCCCAAACATGG 59.180 55.0 0.0 0.0 40.87 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.990642 CCAGCTTTTGGGTTTGTGC 58.009 52.632 0.00 0.00 43.75 4.57
21 22 1.202675 CCAGCTTTTGGGTTTGTGCAT 60.203 47.619 0.00 0.00 43.75 3.96
22 23 2.036992 CCAGCTTTTGGGTTTGTGCATA 59.963 45.455 0.00 0.00 43.75 3.14
23 24 3.319755 CAGCTTTTGGGTTTGTGCATAG 58.680 45.455 0.00 0.00 0.00 2.23
24 25 2.965147 AGCTTTTGGGTTTGTGCATAGT 59.035 40.909 0.00 0.00 0.00 2.12
26 27 4.126437 GCTTTTGGGTTTGTGCATAGTTT 58.874 39.130 0.00 0.00 0.00 2.66
27 28 4.574421 GCTTTTGGGTTTGTGCATAGTTTT 59.426 37.500 0.00 0.00 0.00 2.43
28 29 5.065859 GCTTTTGGGTTTGTGCATAGTTTTT 59.934 36.000 0.00 0.00 0.00 1.94
29 30 6.670077 TTTTGGGTTTGTGCATAGTTTTTC 57.330 33.333 0.00 0.00 0.00 2.29
30 31 4.329462 TGGGTTTGTGCATAGTTTTTCC 57.671 40.909 0.00 0.00 0.00 3.13
31 32 3.964031 TGGGTTTGTGCATAGTTTTTCCT 59.036 39.130 0.00 0.00 0.00 3.36
33 34 5.777732 TGGGTTTGTGCATAGTTTTTCCTAT 59.222 36.000 0.00 0.00 0.00 2.57
34 35 6.099341 GGGTTTGTGCATAGTTTTTCCTATG 58.901 40.000 0.00 4.26 44.66 2.23
35 36 6.295067 GGGTTTGTGCATAGTTTTTCCTATGT 60.295 38.462 9.28 0.00 44.02 2.29
36 37 7.151976 GGTTTGTGCATAGTTTTTCCTATGTT 58.848 34.615 9.28 0.00 44.02 2.71
37 38 7.655732 GGTTTGTGCATAGTTTTTCCTATGTTT 59.344 33.333 9.28 0.00 44.02 2.83
38 39 9.040939 GTTTGTGCATAGTTTTTCCTATGTTTT 57.959 29.630 9.28 0.00 44.02 2.43
40 41 7.151308 TGTGCATAGTTTTTCCTATGTTTTGG 58.849 34.615 9.28 0.00 44.02 3.28
41 42 6.589907 GTGCATAGTTTTTCCTATGTTTTGGG 59.410 38.462 9.28 0.00 44.02 4.12
42 43 6.495181 TGCATAGTTTTTCCTATGTTTTGGGA 59.505 34.615 9.28 0.00 44.02 4.37
44 45 7.093945 GCATAGTTTTTCCTATGTTTTGGGAGA 60.094 37.037 9.28 0.00 44.02 3.71
46 47 7.669089 AGTTTTTCCTATGTTTTGGGAGAAA 57.331 32.000 0.00 0.00 33.03 2.52
47 48 8.084985 AGTTTTTCCTATGTTTTGGGAGAAAA 57.915 30.769 0.00 0.00 35.83 2.29
48 49 8.544622 AGTTTTTCCTATGTTTTGGGAGAAAAA 58.455 29.630 0.00 0.00 38.62 1.94
49 50 9.337396 GTTTTTCCTATGTTTTGGGAGAAAAAT 57.663 29.630 9.99 0.00 41.22 1.82
50 51 9.913310 TTTTTCCTATGTTTTGGGAGAAAAATT 57.087 25.926 0.00 0.00 37.02 1.82
52 53 6.463360 TCCTATGTTTTGGGAGAAAAATTGC 58.537 36.000 0.00 0.00 32.02 3.56
54 55 4.392921 TGTTTTGGGAGAAAAATTGCGA 57.607 36.364 0.00 0.00 32.02 5.10
55 56 4.367450 TGTTTTGGGAGAAAAATTGCGAG 58.633 39.130 0.00 0.00 32.02 5.03
56 57 3.658757 TTTGGGAGAAAAATTGCGAGG 57.341 42.857 0.00 0.00 0.00 4.63
57 58 2.577606 TGGGAGAAAAATTGCGAGGA 57.422 45.000 0.00 0.00 0.00 3.71
58 59 3.085952 TGGGAGAAAAATTGCGAGGAT 57.914 42.857 0.00 0.00 0.00 3.24
60 61 3.831911 TGGGAGAAAAATTGCGAGGATTT 59.168 39.130 0.00 0.00 0.00 2.17
61 62 4.283212 TGGGAGAAAAATTGCGAGGATTTT 59.717 37.500 0.00 0.00 38.09 1.82
62 63 5.221621 TGGGAGAAAAATTGCGAGGATTTTT 60.222 36.000 13.02 13.02 44.78 1.94
92 93 4.591321 AAAAATAGGTGCCTCCATCAGA 57.409 40.909 0.00 0.00 39.02 3.27
93 94 4.591321 AAAATAGGTGCCTCCATCAGAA 57.409 40.909 0.00 0.00 39.02 3.02
94 95 3.853355 AATAGGTGCCTCCATCAGAAG 57.147 47.619 0.00 0.00 39.02 2.85
95 96 2.254152 TAGGTGCCTCCATCAGAAGT 57.746 50.000 0.00 0.00 39.02 3.01
96 97 2.254152 AGGTGCCTCCATCAGAAGTA 57.746 50.000 0.00 0.00 39.02 2.24
98 99 2.912956 AGGTGCCTCCATCAGAAGTAAA 59.087 45.455 0.00 0.00 39.02 2.01
99 100 3.525199 AGGTGCCTCCATCAGAAGTAAAT 59.475 43.478 0.00 0.00 39.02 1.40
100 101 3.629398 GGTGCCTCCATCAGAAGTAAATG 59.371 47.826 0.00 0.00 35.97 2.32
102 103 4.095483 GTGCCTCCATCAGAAGTAAATGTG 59.905 45.833 0.00 0.00 0.00 3.21
103 104 3.065925 GCCTCCATCAGAAGTAAATGTGC 59.934 47.826 0.00 0.00 0.00 4.57
104 105 4.521146 CCTCCATCAGAAGTAAATGTGCT 58.479 43.478 0.00 0.00 0.00 4.40
106 107 5.065731 CCTCCATCAGAAGTAAATGTGCTTC 59.934 44.000 5.63 5.63 44.38 3.86
115 116 5.613358 AGTAAATGTGCTTCTCGAAAAGG 57.387 39.130 0.00 0.00 0.00 3.11
116 117 5.305585 AGTAAATGTGCTTCTCGAAAAGGA 58.694 37.500 0.00 0.00 0.00 3.36
117 118 5.763204 AGTAAATGTGCTTCTCGAAAAGGAA 59.237 36.000 0.00 0.00 0.00 3.36
118 119 5.712152 AAATGTGCTTCTCGAAAAGGAAT 57.288 34.783 0.00 0.00 0.00 3.01
120 121 5.712152 ATGTGCTTCTCGAAAAGGAATTT 57.288 34.783 0.00 0.00 0.00 1.82
121 122 4.858935 TGTGCTTCTCGAAAAGGAATTTG 58.141 39.130 0.00 0.00 0.00 2.32
122 123 4.338118 TGTGCTTCTCGAAAAGGAATTTGT 59.662 37.500 0.00 0.00 0.00 2.83
123 124 5.163561 TGTGCTTCTCGAAAAGGAATTTGTT 60.164 36.000 0.00 0.00 0.00 2.83
125 126 6.255670 GTGCTTCTCGAAAAGGAATTTGTTTT 59.744 34.615 0.00 0.00 0.00 2.43
126 127 6.816140 TGCTTCTCGAAAAGGAATTTGTTTTT 59.184 30.769 0.00 0.00 0.00 1.94
143 144 2.977772 TTTTGAAAACCACAGCCCTG 57.022 45.000 0.00 0.00 0.00 4.45
144 145 0.463620 TTTGAAAACCACAGCCCTGC 59.536 50.000 0.00 0.00 0.00 4.85
145 146 0.396974 TTGAAAACCACAGCCCTGCT 60.397 50.000 0.00 0.00 40.77 4.24
148 149 0.539669 AAAACCACAGCCCTGCTACC 60.540 55.000 0.00 0.00 36.40 3.18
149 150 2.748058 AAACCACAGCCCTGCTACCG 62.748 60.000 0.00 0.00 36.40 4.02
150 151 4.473520 CCACAGCCCTGCTACCGG 62.474 72.222 0.00 0.00 36.40 5.28
157 158 2.746375 CCCTGCTACCGGCTCCATT 61.746 63.158 0.00 0.00 42.39 3.16
158 159 1.224592 CCTGCTACCGGCTCCATTT 59.775 57.895 0.00 0.00 42.39 2.32
159 160 0.815615 CCTGCTACCGGCTCCATTTC 60.816 60.000 0.00 0.00 42.39 2.17
160 161 0.179000 CTGCTACCGGCTCCATTTCT 59.821 55.000 0.00 0.00 42.39 2.52
161 162 0.618458 TGCTACCGGCTCCATTTCTT 59.382 50.000 0.00 0.00 42.39 2.52
165 166 2.586648 ACCGGCTCCATTTCTTTTCT 57.413 45.000 0.00 0.00 0.00 2.52
166 167 2.876581 ACCGGCTCCATTTCTTTTCTT 58.123 42.857 0.00 0.00 0.00 2.52
167 168 2.820197 ACCGGCTCCATTTCTTTTCTTC 59.180 45.455 0.00 0.00 0.00 2.87
170 171 3.445096 CGGCTCCATTTCTTTTCTTCCAT 59.555 43.478 0.00 0.00 0.00 3.41
171 172 4.082026 CGGCTCCATTTCTTTTCTTCCATT 60.082 41.667 0.00 0.00 0.00 3.16
173 174 6.233434 GGCTCCATTTCTTTTCTTCCATTTT 58.767 36.000 0.00 0.00 0.00 1.82
174 175 6.712095 GGCTCCATTTCTTTTCTTCCATTTTT 59.288 34.615 0.00 0.00 0.00 1.94
211 212 7.610580 TTTTCCAGTTCCCATTTTTATCAGT 57.389 32.000 0.00 0.00 0.00 3.41
213 214 8.893563 TTTCCAGTTCCCATTTTTATCAGTAT 57.106 30.769 0.00 0.00 0.00 2.12
214 215 8.893563 TTCCAGTTCCCATTTTTATCAGTATT 57.106 30.769 0.00 0.00 0.00 1.89
215 216 8.893563 TCCAGTTCCCATTTTTATCAGTATTT 57.106 30.769 0.00 0.00 0.00 1.40
216 217 9.320295 TCCAGTTCCCATTTTTATCAGTATTTT 57.680 29.630 0.00 0.00 0.00 1.82
217 218 9.942850 CCAGTTCCCATTTTTATCAGTATTTTT 57.057 29.630 0.00 0.00 0.00 1.94
239 240 8.628630 TTTTTGGTTTTTCCATGAAAAGAGTT 57.371 26.923 0.00 0.00 46.60 3.01
240 241 7.841915 TTTGGTTTTTCCATGAAAAGAGTTC 57.158 32.000 0.00 0.00 46.60 3.01
241 242 5.587289 TGGTTTTTCCATGAAAAGAGTTCG 58.413 37.500 0.00 0.00 41.55 3.95
243 244 5.685954 GGTTTTTCCATGAAAAGAGTTCGTC 59.314 40.000 0.00 0.00 41.55 4.20
244 245 4.725556 TTTCCATGAAAAGAGTTCGTCG 57.274 40.909 0.00 0.00 0.00 5.12
245 246 3.653539 TCCATGAAAAGAGTTCGTCGA 57.346 42.857 0.00 0.00 0.00 4.20
246 247 3.985008 TCCATGAAAAGAGTTCGTCGAA 58.015 40.909 2.90 2.90 0.00 3.71
247 248 4.373527 TCCATGAAAAGAGTTCGTCGAAA 58.626 39.130 9.70 0.00 0.00 3.46
249 250 5.120208 TCCATGAAAAGAGTTCGTCGAAATC 59.880 40.000 23.90 23.90 36.98 2.17
250 251 5.120830 CCATGAAAAGAGTTCGTCGAAATCT 59.879 40.000 27.21 27.21 46.63 2.40
251 252 6.310467 CCATGAAAAGAGTTCGTCGAAATCTA 59.690 38.462 31.20 19.54 44.45 1.98
252 253 7.010552 CCATGAAAAGAGTTCGTCGAAATCTAT 59.989 37.037 31.20 24.16 44.45 1.98
253 254 7.884816 TGAAAAGAGTTCGTCGAAATCTATT 57.115 32.000 31.20 23.85 44.45 1.73
286 5423 5.504010 CGTCTTCTTGCTGCTACTTTTGAAA 60.504 40.000 0.00 0.00 0.00 2.69
288 5425 6.751888 GTCTTCTTGCTGCTACTTTTGAAAAA 59.248 34.615 0.00 0.00 0.00 1.94
289 5426 7.436376 GTCTTCTTGCTGCTACTTTTGAAAAAT 59.564 33.333 0.00 0.00 0.00 1.82
290 5427 8.629158 TCTTCTTGCTGCTACTTTTGAAAAATA 58.371 29.630 0.00 0.00 0.00 1.40
291 5428 8.574196 TTCTTGCTGCTACTTTTGAAAAATAC 57.426 30.769 0.00 0.00 0.00 1.89
293 5430 8.194104 TCTTGCTGCTACTTTTGAAAAATACAA 58.806 29.630 0.00 0.00 0.00 2.41
321 5458 7.972832 AATTACCGTCACTATTCTTTGTCAA 57.027 32.000 0.00 0.00 0.00 3.18
322 5459 8.561738 AATTACCGTCACTATTCTTTGTCAAT 57.438 30.769 0.00 0.00 0.00 2.57
323 5460 7.972832 TTACCGTCACTATTCTTTGTCAATT 57.027 32.000 0.00 0.00 0.00 2.32
324 5461 6.877611 ACCGTCACTATTCTTTGTCAATTT 57.122 33.333 0.00 0.00 0.00 1.82
325 5462 7.272037 ACCGTCACTATTCTTTGTCAATTTT 57.728 32.000 0.00 0.00 0.00 1.82
342 5479 3.146182 TTTTTGCATGGCGGGCTT 58.854 50.000 2.38 0.00 0.00 4.35
343 5480 1.449353 TTTTTGCATGGCGGGCTTT 59.551 47.368 2.38 0.00 0.00 3.51
344 5481 0.179034 TTTTTGCATGGCGGGCTTTT 60.179 45.000 2.38 0.00 0.00 2.27
345 5482 0.179034 TTTTGCATGGCGGGCTTTTT 60.179 45.000 2.38 0.00 0.00 1.94
346 5483 0.883814 TTTGCATGGCGGGCTTTTTG 60.884 50.000 2.38 0.00 0.00 2.44
347 5484 2.037620 TTGCATGGCGGGCTTTTTGT 62.038 50.000 2.38 0.00 0.00 2.83
348 5485 2.028733 GCATGGCGGGCTTTTTGTG 61.029 57.895 2.38 0.00 0.00 3.33
350 5487 0.945265 CATGGCGGGCTTTTTGTGTG 60.945 55.000 2.38 0.00 0.00 3.82
352 5489 2.028925 GCGGGCTTTTTGTGTGGG 59.971 61.111 0.00 0.00 0.00 4.61
353 5490 2.791868 GCGGGCTTTTTGTGTGGGT 61.792 57.895 0.00 0.00 0.00 4.51
355 5492 1.033574 CGGGCTTTTTGTGTGGGTAA 58.966 50.000 0.00 0.00 0.00 2.85
369 5734 5.103728 TGTGTGGGTAAACATGGATGGATAT 60.104 40.000 0.00 0.00 31.49 1.63
372 5737 5.243730 GTGGGTAAACATGGATGGATATTGG 59.756 44.000 0.00 0.00 0.00 3.16
378 5743 5.855338 ACATGGATGGATATTGGAGATGT 57.145 39.130 0.00 0.00 0.00 3.06
379 5744 5.567430 ACATGGATGGATATTGGAGATGTG 58.433 41.667 0.00 0.00 0.00 3.21
386 5751 6.312141 TGGATATTGGAGATGTGACTTCAA 57.688 37.500 1.22 0.00 39.33 2.69
387 5752 6.720309 TGGATATTGGAGATGTGACTTCAAA 58.280 36.000 1.22 0.00 38.62 2.69
393 5758 4.020573 TGGAGATGTGACTTCAAATACGGT 60.021 41.667 1.22 0.00 0.00 4.83
396 5761 4.625742 AGATGTGACTTCAAATACGGTTCG 59.374 41.667 1.22 0.00 0.00 3.95
397 5762 3.719924 TGTGACTTCAAATACGGTTCGT 58.280 40.909 0.00 0.00 44.35 3.85
399 5764 4.025563 TGTGACTTCAAATACGGTTCGTTG 60.026 41.667 0.00 0.00 41.54 4.10
400 5765 3.059461 TGACTTCAAATACGGTTCGTTGC 60.059 43.478 0.00 0.00 41.54 4.17
403 5768 1.801771 TCAAATACGGTTCGTTGCTGG 59.198 47.619 0.00 0.00 41.54 4.85
404 5769 1.135803 CAAATACGGTTCGTTGCTGGG 60.136 52.381 0.00 0.00 41.54 4.45
405 5770 1.303091 AATACGGTTCGTTGCTGGGC 61.303 55.000 0.00 0.00 41.54 5.36
409 5774 2.388232 GGTTCGTTGCTGGGCGTAG 61.388 63.158 0.00 0.00 0.00 3.51
410 5775 1.666872 GTTCGTTGCTGGGCGTAGT 60.667 57.895 0.00 0.00 0.00 2.73
411 5776 1.070105 TTCGTTGCTGGGCGTAGTT 59.930 52.632 0.00 0.00 0.00 2.24
412 5777 1.225376 TTCGTTGCTGGGCGTAGTTG 61.225 55.000 0.00 0.00 0.00 3.16
413 5778 2.677003 CGTTGCTGGGCGTAGTTGG 61.677 63.158 0.00 0.00 0.00 3.77
414 5779 2.671619 TTGCTGGGCGTAGTTGGC 60.672 61.111 0.00 0.00 0.00 4.52
415 5780 3.483788 TTGCTGGGCGTAGTTGGCA 62.484 57.895 0.00 0.00 35.84 4.92
416 5781 3.431725 GCTGGGCGTAGTTGGCAC 61.432 66.667 0.00 0.00 35.84 5.01
417 5782 3.118454 CTGGGCGTAGTTGGCACG 61.118 66.667 0.00 0.00 42.24 5.34
418 5783 3.876589 CTGGGCGTAGTTGGCACGT 62.877 63.158 0.00 0.00 41.41 4.49
422 6009 1.296056 GGCGTAGTTGGCACGTTGAT 61.296 55.000 0.00 0.00 41.41 2.57
424 6011 0.442310 CGTAGTTGGCACGTTGATGG 59.558 55.000 0.00 0.00 34.74 3.51
433 6020 2.984466 CGTTGATGGACGTACGCG 59.016 61.111 16.72 3.53 44.93 6.01
452 6039 4.149396 ACGCGTTGCTTAGTAACAAGTTAG 59.851 41.667 5.58 0.00 0.00 2.34
453 6040 4.392216 GCGTTGCTTAGTAACAAGTTAGC 58.608 43.478 13.15 3.84 0.00 3.09
513 6141 2.095843 CGACGCGGTTAAGCAAGC 59.904 61.111 12.47 0.00 36.85 4.01
514 6142 2.380410 CGACGCGGTTAAGCAAGCT 61.380 57.895 12.47 0.00 36.85 3.74
515 6143 1.074319 CGACGCGGTTAAGCAAGCTA 61.074 55.000 12.47 0.00 36.85 3.32
519 6147 0.375106 GCGGTTAAGCAAGCTAGCTG 59.625 55.000 20.16 13.51 45.89 4.24
520 6148 0.375106 CGGTTAAGCAAGCTAGCTGC 59.625 55.000 20.16 22.22 45.89 5.25
521 6149 1.453155 GGTTAAGCAAGCTAGCTGCA 58.547 50.000 28.77 14.73 45.89 4.41
522 6150 2.019984 GGTTAAGCAAGCTAGCTGCAT 58.980 47.619 28.77 23.00 45.89 3.96
523 6151 2.223433 GGTTAAGCAAGCTAGCTGCATG 60.223 50.000 28.77 20.96 45.89 4.06
550 6178 4.164294 CTCGGTCGTCTTCGAGTATTTTT 58.836 43.478 0.00 0.00 46.96 1.94
556 6184 6.350200 GTCGTCTTCGAGTATTTTTCGTTTT 58.650 36.000 0.00 0.00 46.96 2.43
561 6189 9.089123 GTCTTCGAGTATTTTTCGTTTTTACTG 57.911 33.333 0.00 0.00 39.05 2.74
562 6190 7.795272 TCTTCGAGTATTTTTCGTTTTTACTGC 59.205 33.333 0.00 0.00 39.05 4.40
563 6191 6.365050 TCGAGTATTTTTCGTTTTTACTGCC 58.635 36.000 0.00 0.00 39.05 4.85
564 6192 6.203338 TCGAGTATTTTTCGTTTTTACTGCCT 59.797 34.615 0.00 0.00 39.05 4.75
565 6193 6.302313 CGAGTATTTTTCGTTTTTACTGCCTG 59.698 38.462 0.00 0.00 33.57 4.85
566 6194 5.918576 AGTATTTTTCGTTTTTACTGCCTGC 59.081 36.000 0.00 0.00 0.00 4.85
570 6198 2.143122 TCGTTTTTACTGCCTGCAGAG 58.857 47.619 24.88 8.22 46.30 3.35
573 6201 3.425359 CGTTTTTACTGCCTGCAGAGATG 60.425 47.826 24.88 4.87 46.30 2.90
575 6203 2.391616 TTACTGCCTGCAGAGATGTG 57.608 50.000 24.88 0.00 46.30 3.21
580 6208 2.267006 CTGCAGAGATGTGGCCGT 59.733 61.111 8.42 0.00 0.00 5.68
594 6222 1.440353 GCCGTGTGCGTGTCATTTC 60.440 57.895 0.00 0.00 36.15 2.17
596 6224 1.206578 CGTGTGCGTGTCATTTCCC 59.793 57.895 0.00 0.00 0.00 3.97
609 6239 6.349611 CGTGTCATTTCCCATCTGAAGAAAAT 60.350 38.462 5.39 0.00 33.53 1.82
612 6242 6.094048 GTCATTTCCCATCTGAAGAAAATCGA 59.906 38.462 0.00 0.00 33.53 3.59
616 6246 7.582242 ATTTCCCATCTGAAGAAAATCGAGAGA 60.582 37.037 0.00 0.00 36.53 3.10
630 6260 3.691961 TCGAGAGAGCGATTGATCGAGG 61.692 54.545 16.83 0.00 43.47 4.63
657 6293 7.378728 CACACTACGAAAGCGAAATATATCTGA 59.621 37.037 0.00 0.00 41.64 3.27
664 6300 4.677584 AGCGAAATATATCTGAGATCGGC 58.322 43.478 0.00 0.00 0.00 5.54
676 6312 3.285371 ATCGGCCGGTATCGATCC 58.715 61.111 27.83 2.28 41.56 3.36
677 6313 2.697761 ATCGGCCGGTATCGATCCG 61.698 63.158 27.83 21.87 45.90 4.18
678 6314 3.667282 CGGCCGGTATCGATCCGT 61.667 66.667 20.10 0.00 45.63 4.69
687 6323 4.292599 CGGTATCGATCCGTATGAACAAA 58.707 43.478 21.03 0.00 42.62 2.83
691 6327 4.642445 TCGATCCGTATGAACAAAGCTA 57.358 40.909 0.00 0.00 0.00 3.32
692 6328 4.607955 TCGATCCGTATGAACAAAGCTAG 58.392 43.478 0.00 0.00 0.00 3.42
693 6329 3.182572 CGATCCGTATGAACAAAGCTAGC 59.817 47.826 6.62 6.62 0.00 3.42
695 6331 4.202245 TCCGTATGAACAAAGCTAGCTT 57.798 40.909 24.42 24.42 37.98 3.74
696 6332 4.575885 TCCGTATGAACAAAGCTAGCTTT 58.424 39.130 32.29 32.29 45.98 3.51
708 6344 5.573337 AAGCTAGCTTTGCCTTAATTCTG 57.427 39.130 24.42 0.00 31.29 3.02
709 6345 4.593956 AGCTAGCTTTGCCTTAATTCTGT 58.406 39.130 12.68 0.00 0.00 3.41
710 6346 4.397417 AGCTAGCTTTGCCTTAATTCTGTG 59.603 41.667 12.68 0.00 0.00 3.66
711 6347 4.396166 GCTAGCTTTGCCTTAATTCTGTGA 59.604 41.667 7.70 0.00 0.00 3.58
712 6348 4.773323 AGCTTTGCCTTAATTCTGTGAC 57.227 40.909 0.00 0.00 0.00 3.67
713 6349 3.189287 AGCTTTGCCTTAATTCTGTGACG 59.811 43.478 0.00 0.00 0.00 4.35
714 6350 3.058224 GCTTTGCCTTAATTCTGTGACGT 60.058 43.478 0.00 0.00 0.00 4.34
715 6351 4.466828 CTTTGCCTTAATTCTGTGACGTG 58.533 43.478 0.00 0.00 0.00 4.49
716 6352 3.394674 TGCCTTAATTCTGTGACGTGA 57.605 42.857 0.00 0.00 0.00 4.35
717 6353 3.325870 TGCCTTAATTCTGTGACGTGAG 58.674 45.455 0.00 0.00 0.00 3.51
730 6366 1.589803 ACGTGAGTACCCAAGCAAAC 58.410 50.000 0.00 0.00 46.88 2.93
731 6367 0.872388 CGTGAGTACCCAAGCAAACC 59.128 55.000 0.00 0.00 0.00 3.27
732 6368 1.244816 GTGAGTACCCAAGCAAACCC 58.755 55.000 0.00 0.00 0.00 4.11
733 6369 0.847373 TGAGTACCCAAGCAAACCCA 59.153 50.000 0.00 0.00 0.00 4.51
734 6370 1.215673 TGAGTACCCAAGCAAACCCAA 59.784 47.619 0.00 0.00 0.00 4.12
735 6371 2.158385 TGAGTACCCAAGCAAACCCAAT 60.158 45.455 0.00 0.00 0.00 3.16
736 6372 2.897326 GAGTACCCAAGCAAACCCAATT 59.103 45.455 0.00 0.00 0.00 2.32
749 6385 5.216648 CAAACCCAATTACACGTCGAAAAT 58.783 37.500 0.00 0.00 0.00 1.82
750 6386 5.441709 AACCCAATTACACGTCGAAAATT 57.558 34.783 0.00 0.00 0.00 1.82
758 6398 1.309548 CACGTCGAAAATTTAACGCGC 59.690 47.619 5.73 0.00 38.64 6.86
775 6416 2.348998 CAAGAGGAAGGCGCCACT 59.651 61.111 31.54 23.32 0.00 4.00
781 6422 2.388232 GGAAGGCGCCACTTACGTG 61.388 63.158 31.54 0.00 40.89 4.49
786 6427 2.430244 CGCCACTTACGTGCGAGT 60.430 61.111 11.33 3.48 40.54 4.18
787 6428 2.434134 CGCCACTTACGTGCGAGTC 61.434 63.158 11.33 0.00 40.54 3.36
791 6442 1.442184 ACTTACGTGCGAGTCAGCG 60.442 57.895 0.00 0.00 40.67 5.18
796 6447 3.121030 GTGCGAGTCAGCGGCATT 61.121 61.111 1.45 0.00 39.14 3.56
798 6451 2.390599 TGCGAGTCAGCGGCATTTC 61.391 57.895 1.45 0.00 40.67 2.17
820 6473 0.739561 GCCCGTACACGATCTTCTCT 59.260 55.000 2.76 0.00 43.02 3.10
915 6667 0.464452 CCTCCATTCCTCCGGTACAC 59.536 60.000 0.00 0.00 0.00 2.90
916 6668 1.191535 CTCCATTCCTCCGGTACACA 58.808 55.000 0.00 0.00 0.00 3.72
918 6670 0.611200 CCATTCCTCCGGTACACACA 59.389 55.000 0.00 0.00 0.00 3.72
927 6679 1.188558 CGGTACACACATCGATCACG 58.811 55.000 0.00 0.00 41.26 4.35
1086 6861 2.415090 GCATCACAAGCACATGGAGAAC 60.415 50.000 0.00 0.00 0.00 3.01
1164 6945 5.163540 ACACCTCAGCTTTACCTATTACTCG 60.164 44.000 0.00 0.00 0.00 4.18
1171 6952 8.616076 TCAGCTTTACCTATTACTCGTACTTAC 58.384 37.037 0.00 0.00 0.00 2.34
1202 6992 4.678287 CGCAATTGATGGCAGATTATTCAC 59.322 41.667 10.34 0.00 0.00 3.18
1452 7252 6.717540 CACACATAGACCCTAGCTAGTTATCT 59.282 42.308 19.31 18.40 0.00 1.98
1453 7253 7.231722 CACACATAGACCCTAGCTAGTTATCTT 59.768 40.741 19.31 7.27 0.00 2.40
1454 7254 8.446394 ACACATAGACCCTAGCTAGTTATCTTA 58.554 37.037 19.31 5.01 0.00 2.10
1455 7255 9.469097 CACATAGACCCTAGCTAGTTATCTTAT 57.531 37.037 19.31 6.89 0.00 1.73
1460 7260 8.671409 AGACCCTAGCTAGTTATCTTATACAGT 58.329 37.037 19.31 0.00 0.00 3.55
1461 7261 9.956640 GACCCTAGCTAGTTATCTTATACAGTA 57.043 37.037 19.31 0.00 0.00 2.74
1518 7332 9.295825 TCATTTTGTTGTCTTGTTCCATAGTAT 57.704 29.630 0.00 0.00 0.00 2.12
1544 7358 7.312154 TGAATTGCTGTTTGGTATGTGTATTC 58.688 34.615 0.00 0.00 0.00 1.75
1651 7516 3.543680 TTTCTCTCGAAATAGCAGGGG 57.456 47.619 0.00 0.00 34.35 4.79
1699 7574 8.942338 TTACAACATTACTAGATGTCATGGAC 57.058 34.615 0.00 0.00 39.25 4.02
1768 7643 8.847196 CACATGATAAATCTTTGTCTCCATGAT 58.153 33.333 0.00 0.00 30.69 2.45
1807 7682 5.607477 TCTACCGAGCCTTATTATTTGGTG 58.393 41.667 0.00 0.00 0.00 4.17
2004 7885 0.846015 TGATCCTTCGCATGGGGATT 59.154 50.000 10.21 0.00 39.63 3.01
2013 7894 2.098934 TCGCATGGGGATTCGAAATTTG 59.901 45.455 10.21 0.00 0.00 2.32
2037 7918 6.100668 GTGTCTTCTGACCCATAACTAGAAC 58.899 44.000 0.00 0.00 42.28 3.01
2058 7939 5.474578 ACAGTCTTGCTAAGTCTCAATCA 57.525 39.130 0.00 0.00 0.00 2.57
2062 7943 5.931146 AGTCTTGCTAAGTCTCAATCAACTG 59.069 40.000 0.00 0.00 0.00 3.16
2128 8010 5.540911 ACATTGAGATCCGTGCAAATTTTT 58.459 33.333 0.00 0.00 0.00 1.94
2187 8069 6.591935 TCACTTGACTGAGACTTGGTTAAAT 58.408 36.000 0.00 0.00 0.00 1.40
2195 8077 6.419484 TGAGACTTGGTTAAATCTCAGTCA 57.581 37.500 0.00 0.00 41.99 3.41
2209 8091 2.540265 CAGTCAACTGAGACCAAGCT 57.460 50.000 4.05 0.00 46.59 3.74
2235 8117 7.386059 ACACCCAAATTAGAATGAACCAAATC 58.614 34.615 0.00 0.00 0.00 2.17
2236 8118 7.235399 ACACCCAAATTAGAATGAACCAAATCT 59.765 33.333 0.00 0.00 0.00 2.40
2237 8119 8.096414 CACCCAAATTAGAATGAACCAAATCTT 58.904 33.333 0.00 0.00 0.00 2.40
2238 8120 8.096414 ACCCAAATTAGAATGAACCAAATCTTG 58.904 33.333 0.00 0.00 0.00 3.02
2239 8121 8.313292 CCCAAATTAGAATGAACCAAATCTTGA 58.687 33.333 0.00 0.00 0.00 3.02
2250 8132 8.647143 TGAACCAAATCTTGAAGAAAAACATC 57.353 30.769 0.00 0.00 0.00 3.06
2252 8134 8.424274 AACCAAATCTTGAAGAAAAACATCAC 57.576 30.769 0.00 0.00 0.00 3.06
2255 8137 7.712205 CCAAATCTTGAAGAAAAACATCACCTT 59.288 33.333 0.00 0.00 0.00 3.50
2257 8139 7.587037 ATCTTGAAGAAAAACATCACCTTGA 57.413 32.000 0.00 0.00 0.00 3.02
2264 8146 9.750125 GAAGAAAAACATCACCTTGAGTTAAAT 57.250 29.630 0.00 0.00 0.00 1.40
2265 8147 9.533253 AAGAAAAACATCACCTTGAGTTAAATG 57.467 29.630 0.00 0.00 0.00 2.32
2267 8149 9.528018 GAAAAACATCACCTTGAGTTAAATGAA 57.472 29.630 0.00 0.00 0.00 2.57
2272 8154 6.560253 TCACCTTGAGTTAAATGAAGAAGC 57.440 37.500 3.60 0.00 0.00 3.86
2273 8155 6.299141 TCACCTTGAGTTAAATGAAGAAGCT 58.701 36.000 3.60 0.00 0.00 3.74
2274 8156 6.428159 TCACCTTGAGTTAAATGAAGAAGCTC 59.572 38.462 3.60 0.00 0.00 4.09
2275 8157 6.205464 CACCTTGAGTTAAATGAAGAAGCTCA 59.795 38.462 3.60 0.00 0.00 4.26
2276 8158 6.205658 ACCTTGAGTTAAATGAAGAAGCTCAC 59.794 38.462 3.60 0.00 32.21 3.51
2277 8159 6.348868 CCTTGAGTTAAATGAAGAAGCTCACC 60.349 42.308 3.60 0.00 32.21 4.02
2280 8162 5.574188 AGTTAAATGAAGAAGCTCACCCAT 58.426 37.500 0.00 0.00 0.00 4.00
2285 8172 2.376518 TGAAGAAGCTCACCCATTTCCT 59.623 45.455 0.00 0.00 0.00 3.36
2296 8183 6.681368 GCTCACCCATTTCCTTTATCAACATC 60.681 42.308 0.00 0.00 0.00 3.06
2298 8185 6.723515 TCACCCATTTCCTTTATCAACATCAA 59.276 34.615 0.00 0.00 0.00 2.57
2303 8190 9.177608 CCATTTCCTTTATCAACATCAACTCTA 57.822 33.333 0.00 0.00 0.00 2.43
2309 8196 7.611855 CCTTTATCAACATCAACTCTACCCTTT 59.388 37.037 0.00 0.00 0.00 3.11
2317 8204 7.106239 ACATCAACTCTACCCTTTATTGACAG 58.894 38.462 0.00 0.00 0.00 3.51
2318 8205 5.488341 TCAACTCTACCCTTTATTGACAGC 58.512 41.667 0.00 0.00 0.00 4.40
2323 8210 5.525484 TCTACCCTTTATTGACAGCTAGGA 58.475 41.667 0.00 0.00 0.00 2.94
2335 8222 5.974108 TGACAGCTAGGACAAGGTTATTAC 58.026 41.667 0.00 0.00 0.00 1.89
2336 8223 5.720041 TGACAGCTAGGACAAGGTTATTACT 59.280 40.000 0.00 0.00 0.00 2.24
2337 8224 6.893554 TGACAGCTAGGACAAGGTTATTACTA 59.106 38.462 0.00 0.00 0.00 1.82
2338 8225 7.110043 ACAGCTAGGACAAGGTTATTACTAC 57.890 40.000 0.00 0.00 0.00 2.73
2339 8226 6.097981 ACAGCTAGGACAAGGTTATTACTACC 59.902 42.308 0.00 0.00 35.85 3.18
2341 8228 6.324254 AGCTAGGACAAGGTTATTACTACCTG 59.676 42.308 0.00 0.00 45.17 4.00
2342 8229 5.952347 AGGACAAGGTTATTACTACCTGG 57.048 43.478 0.00 0.00 45.17 4.45
2343 8230 5.596763 AGGACAAGGTTATTACTACCTGGA 58.403 41.667 0.00 0.00 45.17 3.86
2344 8231 5.424573 AGGACAAGGTTATTACTACCTGGAC 59.575 44.000 0.00 0.00 45.17 4.02
2345 8232 5.424573 GGACAAGGTTATTACTACCTGGACT 59.575 44.000 0.00 0.00 45.17 3.85
2349 8236 8.066247 ACAAGGTTATTACTACCTGGACTATCT 58.934 37.037 0.00 0.00 45.17 1.98
2351 8238 9.810870 AAGGTTATTACTACCTGGACTATCTAG 57.189 37.037 0.00 0.00 45.17 2.43
2354 8241 8.949177 GTTATTACTACCTGGACTATCTAGCTC 58.051 40.741 0.00 0.00 0.00 4.09
2359 8246 2.298729 CCTGGACTATCTAGCTCAAGGC 59.701 54.545 0.00 0.00 42.19 4.35
2372 8259 2.742053 GCTCAAGGCGACTACAATGAAA 59.258 45.455 0.00 0.00 42.68 2.69
2373 8260 3.375299 GCTCAAGGCGACTACAATGAAAT 59.625 43.478 0.00 0.00 42.68 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.243602 ATGCACAAACCCAAAAGCTG 57.756 45.000 0.00 0.00 0.00 4.24
3 4 2.965147 ACTATGCACAAACCCAAAAGCT 59.035 40.909 0.00 0.00 0.00 3.74
5 6 6.238347 GGAAAAACTATGCACAAACCCAAAAG 60.238 38.462 0.00 0.00 0.00 2.27
6 7 5.586643 GGAAAAACTATGCACAAACCCAAAA 59.413 36.000 0.00 0.00 0.00 2.44
7 8 5.104735 AGGAAAAACTATGCACAAACCCAAA 60.105 36.000 0.00 0.00 0.00 3.28
8 9 4.407296 AGGAAAAACTATGCACAAACCCAA 59.593 37.500 0.00 0.00 0.00 4.12
9 10 3.964031 AGGAAAAACTATGCACAAACCCA 59.036 39.130 0.00 0.00 0.00 4.51
10 11 4.600692 AGGAAAAACTATGCACAAACCC 57.399 40.909 0.00 0.00 0.00 4.11
21 22 8.770010 TTTCTCCCAAAACATAGGAAAAACTA 57.230 30.769 0.00 0.00 0.00 2.24
22 23 7.669089 TTTCTCCCAAAACATAGGAAAAACT 57.331 32.000 0.00 0.00 0.00 2.66
23 24 8.725405 TTTTTCTCCCAAAACATAGGAAAAAC 57.275 30.769 0.00 0.00 36.75 2.43
24 25 9.913310 AATTTTTCTCCCAAAACATAGGAAAAA 57.087 25.926 11.28 11.28 41.77 1.94
26 27 7.443879 GCAATTTTTCTCCCAAAACATAGGAAA 59.556 33.333 0.00 0.00 0.00 3.13
27 28 6.934083 GCAATTTTTCTCCCAAAACATAGGAA 59.066 34.615 0.00 0.00 0.00 3.36
28 29 6.463360 GCAATTTTTCTCCCAAAACATAGGA 58.537 36.000 0.00 0.00 0.00 2.94
29 30 5.348451 CGCAATTTTTCTCCCAAAACATAGG 59.652 40.000 0.00 0.00 0.00 2.57
30 31 6.155827 TCGCAATTTTTCTCCCAAAACATAG 58.844 36.000 0.00 0.00 0.00 2.23
31 32 6.090483 TCGCAATTTTTCTCCCAAAACATA 57.910 33.333 0.00 0.00 0.00 2.29
33 34 4.367450 CTCGCAATTTTTCTCCCAAAACA 58.633 39.130 0.00 0.00 0.00 2.83
34 35 3.740832 CCTCGCAATTTTTCTCCCAAAAC 59.259 43.478 0.00 0.00 0.00 2.43
35 36 3.639094 TCCTCGCAATTTTTCTCCCAAAA 59.361 39.130 0.00 0.00 0.00 2.44
36 37 3.226777 TCCTCGCAATTTTTCTCCCAAA 58.773 40.909 0.00 0.00 0.00 3.28
37 38 2.870175 TCCTCGCAATTTTTCTCCCAA 58.130 42.857 0.00 0.00 0.00 4.12
38 39 2.577606 TCCTCGCAATTTTTCTCCCA 57.422 45.000 0.00 0.00 0.00 4.37
71 72 4.591321 TCTGATGGAGGCACCTATTTTT 57.409 40.909 1.84 0.00 39.86 1.94
72 73 4.018050 ACTTCTGATGGAGGCACCTATTTT 60.018 41.667 1.84 0.00 39.86 1.82
73 74 3.525199 ACTTCTGATGGAGGCACCTATTT 59.475 43.478 1.84 0.00 39.86 1.40
74 75 3.118531 ACTTCTGATGGAGGCACCTATT 58.881 45.455 1.84 0.00 39.86 1.73
75 76 2.769209 ACTTCTGATGGAGGCACCTAT 58.231 47.619 1.84 0.00 39.86 2.57
76 77 2.254152 ACTTCTGATGGAGGCACCTA 57.746 50.000 1.84 0.00 39.86 3.08
77 78 2.254152 TACTTCTGATGGAGGCACCT 57.746 50.000 1.84 0.00 39.86 4.00
78 79 3.350219 TTTACTTCTGATGGAGGCACC 57.650 47.619 0.00 0.00 39.54 5.01
79 80 4.095483 CACATTTACTTCTGATGGAGGCAC 59.905 45.833 0.00 0.00 0.00 5.01
80 81 4.264253 CACATTTACTTCTGATGGAGGCA 58.736 43.478 0.00 0.00 0.00 4.75
82 83 4.521146 AGCACATTTACTTCTGATGGAGG 58.479 43.478 0.00 0.00 0.00 4.30
83 84 6.116680 GAAGCACATTTACTTCTGATGGAG 57.883 41.667 0.00 0.00 39.36 3.86
91 92 6.073222 TCCTTTTCGAGAAGCACATTTACTTC 60.073 38.462 10.12 0.00 42.13 3.01
92 93 5.763204 TCCTTTTCGAGAAGCACATTTACTT 59.237 36.000 10.12 0.00 0.00 2.24
93 94 5.305585 TCCTTTTCGAGAAGCACATTTACT 58.694 37.500 10.12 0.00 0.00 2.24
94 95 5.607119 TCCTTTTCGAGAAGCACATTTAC 57.393 39.130 10.12 0.00 0.00 2.01
95 96 6.817765 ATTCCTTTTCGAGAAGCACATTTA 57.182 33.333 10.12 0.00 0.00 1.40
96 97 5.712152 ATTCCTTTTCGAGAAGCACATTT 57.288 34.783 10.12 0.00 0.00 2.32
98 99 5.010012 ACAAATTCCTTTTCGAGAAGCACAT 59.990 36.000 10.12 0.00 0.00 3.21
99 100 4.338118 ACAAATTCCTTTTCGAGAAGCACA 59.662 37.500 10.12 0.00 0.00 4.57
100 101 4.860072 ACAAATTCCTTTTCGAGAAGCAC 58.140 39.130 10.12 0.00 0.00 4.40
102 103 6.828502 AAAACAAATTCCTTTTCGAGAAGC 57.171 33.333 10.12 0.00 0.00 3.86
123 124 2.679349 GCAGGGCTGTGGTTTTCAAAAA 60.679 45.455 0.00 0.00 0.00 1.94
125 126 0.463620 GCAGGGCTGTGGTTTTCAAA 59.536 50.000 0.00 0.00 0.00 2.69
126 127 0.396974 AGCAGGGCTGTGGTTTTCAA 60.397 50.000 0.00 0.00 37.57 2.69
129 130 0.539669 GGTAGCAGGGCTGTGGTTTT 60.540 55.000 0.07 0.00 40.10 2.43
130 131 1.074951 GGTAGCAGGGCTGTGGTTT 59.925 57.895 0.07 0.00 40.10 3.27
133 134 4.473520 CCGGTAGCAGGGCTGTGG 62.474 72.222 0.07 0.00 40.10 4.17
143 144 1.751437 AAAGAAATGGAGCCGGTAGC 58.249 50.000 1.90 0.00 44.25 3.58
144 145 3.610911 AGAAAAGAAATGGAGCCGGTAG 58.389 45.455 1.90 0.00 0.00 3.18
145 146 3.713826 AGAAAAGAAATGGAGCCGGTA 57.286 42.857 1.90 0.00 0.00 4.02
148 149 2.819608 TGGAAGAAAAGAAATGGAGCCG 59.180 45.455 0.00 0.00 0.00 5.52
149 150 5.411831 AATGGAAGAAAAGAAATGGAGCC 57.588 39.130 0.00 0.00 0.00 4.70
150 151 7.734924 AAAAATGGAAGAAAAGAAATGGAGC 57.265 32.000 0.00 0.00 0.00 4.70
187 188 7.610580 ACTGATAAAAATGGGAACTGGAAAA 57.389 32.000 0.00 0.00 0.00 2.29
188 189 8.893563 ATACTGATAAAAATGGGAACTGGAAA 57.106 30.769 0.00 0.00 0.00 3.13
190 191 8.893563 AAATACTGATAAAAATGGGAACTGGA 57.106 30.769 0.00 0.00 0.00 3.86
220 221 5.395486 CGACGAACTCTTTTCATGGAAAAAC 59.605 40.000 0.00 0.00 40.34 2.43
221 222 5.294799 TCGACGAACTCTTTTCATGGAAAAA 59.705 36.000 0.00 0.00 40.34 1.94
223 224 4.373527 TCGACGAACTCTTTTCATGGAAA 58.626 39.130 0.00 0.00 0.00 3.13
224 225 3.985008 TCGACGAACTCTTTTCATGGAA 58.015 40.909 0.00 0.00 0.00 3.53
225 226 3.653539 TCGACGAACTCTTTTCATGGA 57.346 42.857 0.00 0.00 0.00 3.41
226 227 4.725556 TTTCGACGAACTCTTTTCATGG 57.274 40.909 10.38 0.00 0.00 3.66
227 228 6.158175 AGATTTCGACGAACTCTTTTCATG 57.842 37.500 20.89 0.00 29.35 3.07
228 229 8.480643 AATAGATTTCGACGAACTCTTTTCAT 57.519 30.769 28.32 16.64 34.33 2.57
229 230 7.884816 AATAGATTTCGACGAACTCTTTTCA 57.115 32.000 28.32 15.36 34.33 2.69
234 235 9.582431 TCATTTTAATAGATTTCGACGAACTCT 57.418 29.630 26.92 26.92 36.03 3.24
236 237 8.601476 GGTCATTTTAATAGATTTCGACGAACT 58.399 33.333 10.38 4.73 0.00 3.01
237 238 7.578024 CGGTCATTTTAATAGATTTCGACGAAC 59.422 37.037 10.38 0.00 0.00 3.95
238 239 7.276218 ACGGTCATTTTAATAGATTTCGACGAA 59.724 33.333 6.10 6.10 0.00 3.85
239 240 6.753279 ACGGTCATTTTAATAGATTTCGACGA 59.247 34.615 0.00 0.00 0.00 4.20
240 241 6.929896 ACGGTCATTTTAATAGATTTCGACG 58.070 36.000 0.00 0.00 0.00 5.12
241 242 8.128016 AGACGGTCATTTTAATAGATTTCGAC 57.872 34.615 11.27 0.00 0.00 4.20
243 244 8.818057 AGAAGACGGTCATTTTAATAGATTTCG 58.182 33.333 11.27 0.00 0.00 3.46
246 247 8.398665 GCAAGAAGACGGTCATTTTAATAGATT 58.601 33.333 11.27 0.00 0.00 2.40
247 248 7.770897 AGCAAGAAGACGGTCATTTTAATAGAT 59.229 33.333 11.27 0.00 0.00 1.98
249 250 7.182761 CAGCAAGAAGACGGTCATTTTAATAG 58.817 38.462 11.27 0.00 0.00 1.73
250 251 6.403200 GCAGCAAGAAGACGGTCATTTTAATA 60.403 38.462 11.27 0.00 0.00 0.98
251 252 5.619981 GCAGCAAGAAGACGGTCATTTTAAT 60.620 40.000 11.27 0.00 0.00 1.40
252 253 4.320202 GCAGCAAGAAGACGGTCATTTTAA 60.320 41.667 11.27 0.00 0.00 1.52
253 254 3.188460 GCAGCAAGAAGACGGTCATTTTA 59.812 43.478 11.27 0.00 0.00 1.52
297 5434 7.972832 TTGACAAAGAATAGTGACGGTAATT 57.027 32.000 0.00 0.00 0.00 1.40
298 5435 8.561738 AATTGACAAAGAATAGTGACGGTAAT 57.438 30.769 0.00 0.00 0.00 1.89
299 5436 7.972832 AATTGACAAAGAATAGTGACGGTAA 57.027 32.000 0.00 0.00 0.00 2.85
300 5437 7.972832 AAATTGACAAAGAATAGTGACGGTA 57.027 32.000 0.00 0.00 0.00 4.02
325 5462 0.179034 AAAAGCCCGCCATGCAAAAA 60.179 45.000 0.00 0.00 0.00 1.94
328 5465 1.301558 CAAAAAGCCCGCCATGCAA 60.302 52.632 0.00 0.00 0.00 4.08
330 5467 2.028733 CACAAAAAGCCCGCCATGC 61.029 57.895 0.00 0.00 0.00 4.06
332 5469 1.367102 CACACAAAAAGCCCGCCAT 59.633 52.632 0.00 0.00 0.00 4.40
333 5470 2.790791 CCACACAAAAAGCCCGCCA 61.791 57.895 0.00 0.00 0.00 5.69
334 5471 2.028925 CCACACAAAAAGCCCGCC 59.971 61.111 0.00 0.00 0.00 6.13
335 5472 1.457009 TACCCACACAAAAAGCCCGC 61.457 55.000 0.00 0.00 0.00 6.13
337 5474 2.168728 TGTTTACCCACACAAAAAGCCC 59.831 45.455 0.00 0.00 0.00 5.19
338 5475 3.528597 TGTTTACCCACACAAAAAGCC 57.471 42.857 0.00 0.00 0.00 4.35
339 5476 3.807071 CCATGTTTACCCACACAAAAAGC 59.193 43.478 0.00 0.00 0.00 3.51
340 5477 5.269505 TCCATGTTTACCCACACAAAAAG 57.730 39.130 0.00 0.00 0.00 2.27
341 5478 5.453903 CCATCCATGTTTACCCACACAAAAA 60.454 40.000 0.00 0.00 0.00 1.94
342 5479 4.039730 CCATCCATGTTTACCCACACAAAA 59.960 41.667 0.00 0.00 0.00 2.44
343 5480 3.576118 CCATCCATGTTTACCCACACAAA 59.424 43.478 0.00 0.00 0.00 2.83
344 5481 3.161067 CCATCCATGTTTACCCACACAA 58.839 45.455 0.00 0.00 0.00 3.33
345 5482 2.376855 TCCATCCATGTTTACCCACACA 59.623 45.455 0.00 0.00 0.00 3.72
346 5483 3.080300 TCCATCCATGTTTACCCACAC 57.920 47.619 0.00 0.00 0.00 3.82
347 5484 5.661503 ATATCCATCCATGTTTACCCACA 57.338 39.130 0.00 0.00 0.00 4.17
348 5485 5.243730 CCAATATCCATCCATGTTTACCCAC 59.756 44.000 0.00 0.00 0.00 4.61
350 5487 5.640147 TCCAATATCCATCCATGTTTACCC 58.360 41.667 0.00 0.00 0.00 3.69
352 5489 7.667219 ACATCTCCAATATCCATCCATGTTTAC 59.333 37.037 0.00 0.00 0.00 2.01
353 5490 7.666804 CACATCTCCAATATCCATCCATGTTTA 59.333 37.037 0.00 0.00 0.00 2.01
355 5492 6.008331 CACATCTCCAATATCCATCCATGTT 58.992 40.000 0.00 0.00 0.00 2.71
369 5734 4.935205 CCGTATTTGAAGTCACATCTCCAA 59.065 41.667 0.00 0.00 0.00 3.53
372 5737 5.220228 CGAACCGTATTTGAAGTCACATCTC 60.220 44.000 0.00 0.00 0.00 2.75
378 5743 3.059461 GCAACGAACCGTATTTGAAGTCA 60.059 43.478 0.00 0.00 39.99 3.41
379 5744 3.185797 AGCAACGAACCGTATTTGAAGTC 59.814 43.478 0.00 0.00 39.99 3.01
386 5751 1.303091 GCCCAGCAACGAACCGTATT 61.303 55.000 0.00 0.00 39.99 1.89
387 5752 1.743995 GCCCAGCAACGAACCGTAT 60.744 57.895 0.00 0.00 39.99 3.06
393 5758 1.070105 AACTACGCCCAGCAACGAA 59.930 52.632 0.00 0.00 0.00 3.85
396 5761 2.978018 GCCAACTACGCCCAGCAAC 61.978 63.158 0.00 0.00 0.00 4.17
397 5762 2.671619 GCCAACTACGCCCAGCAA 60.672 61.111 0.00 0.00 0.00 3.91
399 5764 3.431725 GTGCCAACTACGCCCAGC 61.432 66.667 0.00 0.00 0.00 4.85
400 5765 3.118454 CGTGCCAACTACGCCCAG 61.118 66.667 0.00 0.00 34.56 4.45
403 5768 1.296056 ATCAACGTGCCAACTACGCC 61.296 55.000 0.00 0.00 44.87 5.68
404 5769 0.179225 CATCAACGTGCCAACTACGC 60.179 55.000 0.00 0.00 44.87 4.42
405 5770 0.442310 CCATCAACGTGCCAACTACG 59.558 55.000 0.00 0.00 46.31 3.51
406 5771 1.463444 GTCCATCAACGTGCCAACTAC 59.537 52.381 0.00 0.00 0.00 2.73
407 5772 1.803334 GTCCATCAACGTGCCAACTA 58.197 50.000 0.00 0.00 0.00 2.24
409 5774 1.206578 CGTCCATCAACGTGCCAAC 59.793 57.895 0.00 0.00 37.86 3.77
410 5775 3.649096 CGTCCATCAACGTGCCAA 58.351 55.556 0.00 0.00 37.86 4.52
432 6019 4.433805 CGGCTAACTTGTTACTAAGCAACG 60.434 45.833 7.86 0.00 0.00 4.10
433 6020 4.142966 CCGGCTAACTTGTTACTAAGCAAC 60.143 45.833 0.00 0.00 0.00 4.17
443 6030 0.393820 TTCGACCCGGCTAACTTGTT 59.606 50.000 0.00 0.00 0.00 2.83
452 6039 1.669265 CTAAGGAATTTTCGACCCGGC 59.331 52.381 0.00 0.00 0.00 6.13
453 6040 1.669265 GCTAAGGAATTTTCGACCCGG 59.331 52.381 0.00 0.00 0.00 5.73
510 6138 0.252479 AGTCTGCATGCAGCTAGCTT 59.748 50.000 37.48 18.15 45.94 3.74
513 6141 0.875040 CCGAGTCTGCATGCAGCTAG 60.875 60.000 37.48 31.95 45.94 3.42
514 6142 1.142531 CCGAGTCTGCATGCAGCTA 59.857 57.895 37.48 22.34 45.94 3.32
515 6143 2.125229 CCGAGTCTGCATGCAGCT 60.125 61.111 37.48 34.08 45.94 4.24
518 6146 2.125952 CGACCGAGTCTGCATGCA 60.126 61.111 21.29 21.29 0.00 3.96
519 6147 2.125912 ACGACCGAGTCTGCATGC 60.126 61.111 11.82 11.82 0.00 4.06
520 6148 4.079090 GACGACCGAGTCTGCATG 57.921 61.111 0.00 0.00 38.09 4.06
543 6171 5.688176 TGCAGGCAGTAAAAACGAAAAATAC 59.312 36.000 0.00 0.00 0.00 1.89
546 6174 4.109050 CTGCAGGCAGTAAAAACGAAAAA 58.891 39.130 13.02 0.00 39.10 1.94
550 6178 2.143122 CTCTGCAGGCAGTAAAAACGA 58.857 47.619 19.75 0.00 43.96 3.85
556 6184 1.065926 CCACATCTCTGCAGGCAGTAA 60.066 52.381 19.75 10.32 43.96 2.24
561 6189 2.827642 GGCCACATCTCTGCAGGC 60.828 66.667 15.13 8.22 42.92 4.85
562 6190 2.513204 CGGCCACATCTCTGCAGG 60.513 66.667 15.13 4.77 0.00 4.85
563 6191 2.104859 CACGGCCACATCTCTGCAG 61.105 63.158 7.63 7.63 0.00 4.41
564 6192 2.046988 CACGGCCACATCTCTGCA 60.047 61.111 2.24 0.00 0.00 4.41
565 6193 2.046892 ACACGGCCACATCTCTGC 60.047 61.111 2.24 0.00 0.00 4.26
566 6194 2.393768 GCACACGGCCACATCTCTG 61.394 63.158 2.24 0.00 36.11 3.35
570 6198 4.088762 CACGCACACGGCCACATC 62.089 66.667 2.24 0.00 46.04 3.06
575 6203 2.780149 GAAATGACACGCACACGGCC 62.780 60.000 0.00 0.00 46.04 6.13
580 6208 1.164411 GATGGGAAATGACACGCACA 58.836 50.000 0.00 0.00 0.00 4.57
594 6222 5.016051 TCTCTCGATTTTCTTCAGATGGG 57.984 43.478 0.00 0.00 0.00 4.00
596 6224 4.206814 CGCTCTCTCGATTTTCTTCAGATG 59.793 45.833 0.00 0.00 0.00 2.90
630 6260 2.875080 ATTTCGCTTTCGTAGTGTGC 57.125 45.000 1.91 0.00 35.79 4.57
657 6293 4.417641 ATCGATACCGGCCGATCT 57.582 55.556 30.73 0.00 41.05 2.75
675 6311 4.946784 AAAGCTAGCTTTGTTCATACGG 57.053 40.909 35.80 0.00 43.72 4.02
687 6323 4.397417 CACAGAATTAAGGCAAAGCTAGCT 59.603 41.667 12.68 12.68 0.00 3.32
691 6327 3.189287 CGTCACAGAATTAAGGCAAAGCT 59.811 43.478 0.00 0.00 0.00 3.74
692 6328 3.058224 ACGTCACAGAATTAAGGCAAAGC 60.058 43.478 0.00 0.00 0.00 3.51
693 6329 4.213270 TCACGTCACAGAATTAAGGCAAAG 59.787 41.667 0.00 0.00 0.00 2.77
695 6331 3.734463 TCACGTCACAGAATTAAGGCAA 58.266 40.909 0.00 0.00 0.00 4.52
696 6332 3.244078 ACTCACGTCACAGAATTAAGGCA 60.244 43.478 0.00 0.00 0.00 4.75
697 6333 3.326747 ACTCACGTCACAGAATTAAGGC 58.673 45.455 0.00 0.00 0.00 4.35
698 6334 4.863131 GGTACTCACGTCACAGAATTAAGG 59.137 45.833 0.00 0.00 0.00 2.69
699 6335 4.863131 GGGTACTCACGTCACAGAATTAAG 59.137 45.833 0.00 0.00 0.00 1.85
700 6336 4.281435 TGGGTACTCACGTCACAGAATTAA 59.719 41.667 0.00 0.00 0.00 1.40
702 6338 2.631062 TGGGTACTCACGTCACAGAATT 59.369 45.455 0.00 0.00 0.00 2.17
703 6339 2.244695 TGGGTACTCACGTCACAGAAT 58.755 47.619 0.00 0.00 0.00 2.40
704 6340 1.694844 TGGGTACTCACGTCACAGAA 58.305 50.000 0.00 0.00 0.00 3.02
705 6341 1.611977 CTTGGGTACTCACGTCACAGA 59.388 52.381 0.00 0.00 0.00 3.41
706 6342 1.935300 GCTTGGGTACTCACGTCACAG 60.935 57.143 0.00 0.00 0.00 3.66
707 6343 0.032952 GCTTGGGTACTCACGTCACA 59.967 55.000 0.00 0.00 0.00 3.58
708 6344 0.032952 TGCTTGGGTACTCACGTCAC 59.967 55.000 0.00 0.00 0.00 3.67
709 6345 0.753867 TTGCTTGGGTACTCACGTCA 59.246 50.000 0.00 0.00 0.00 4.35
710 6346 1.529865 GTTTGCTTGGGTACTCACGTC 59.470 52.381 0.00 0.00 0.00 4.34
711 6347 1.589803 GTTTGCTTGGGTACTCACGT 58.410 50.000 0.00 0.00 0.00 4.49
712 6348 0.872388 GGTTTGCTTGGGTACTCACG 59.128 55.000 0.00 0.00 0.00 4.35
713 6349 1.244816 GGGTTTGCTTGGGTACTCAC 58.755 55.000 0.00 0.00 0.00 3.51
714 6350 0.847373 TGGGTTTGCTTGGGTACTCA 59.153 50.000 0.00 0.00 0.00 3.41
715 6351 1.989706 TTGGGTTTGCTTGGGTACTC 58.010 50.000 0.00 0.00 0.00 2.59
716 6352 2.694616 ATTGGGTTTGCTTGGGTACT 57.305 45.000 0.00 0.00 0.00 2.73
717 6353 3.574826 TGTAATTGGGTTTGCTTGGGTAC 59.425 43.478 0.00 0.00 0.00 3.34
718 6354 3.574826 GTGTAATTGGGTTTGCTTGGGTA 59.425 43.478 0.00 0.00 0.00 3.69
719 6355 2.367241 GTGTAATTGGGTTTGCTTGGGT 59.633 45.455 0.00 0.00 0.00 4.51
720 6356 2.609244 CGTGTAATTGGGTTTGCTTGGG 60.609 50.000 0.00 0.00 0.00 4.12
721 6357 2.035321 ACGTGTAATTGGGTTTGCTTGG 59.965 45.455 0.00 0.00 0.00 3.61
722 6358 3.305110 GACGTGTAATTGGGTTTGCTTG 58.695 45.455 0.00 0.00 0.00 4.01
723 6359 2.031508 CGACGTGTAATTGGGTTTGCTT 60.032 45.455 0.00 0.00 0.00 3.91
724 6360 1.533731 CGACGTGTAATTGGGTTTGCT 59.466 47.619 0.00 0.00 0.00 3.91
725 6361 1.532007 TCGACGTGTAATTGGGTTTGC 59.468 47.619 0.00 0.00 0.00 3.68
726 6362 3.881780 TTCGACGTGTAATTGGGTTTG 57.118 42.857 0.00 0.00 0.00 2.93
727 6363 4.897025 TTTTCGACGTGTAATTGGGTTT 57.103 36.364 0.00 0.00 0.00 3.27
728 6364 5.441709 AATTTTCGACGTGTAATTGGGTT 57.558 34.783 0.00 0.00 0.00 4.11
729 6365 5.441709 AAATTTTCGACGTGTAATTGGGT 57.558 34.783 0.00 0.00 0.00 4.51
730 6366 6.031625 CGTTAAATTTTCGACGTGTAATTGGG 59.968 38.462 0.00 0.00 0.00 4.12
731 6367 6.450154 GCGTTAAATTTTCGACGTGTAATTGG 60.450 38.462 15.93 0.00 37.78 3.16
732 6368 6.435674 GCGTTAAATTTTCGACGTGTAATTG 58.564 36.000 15.93 0.00 37.78 2.32
733 6369 5.278827 CGCGTTAAATTTTCGACGTGTAATT 59.721 36.000 18.61 0.00 40.10 1.40
734 6370 4.777527 CGCGTTAAATTTTCGACGTGTAAT 59.222 37.500 18.61 0.00 40.10 1.89
735 6371 4.133128 CGCGTTAAATTTTCGACGTGTAA 58.867 39.130 18.61 0.00 40.10 2.41
736 6372 3.709300 CGCGTTAAATTTTCGACGTGTA 58.291 40.909 18.61 0.00 40.10 2.90
749 6385 1.153353 CCTTCCTCTTGCGCGTTAAA 58.847 50.000 8.43 0.00 0.00 1.52
750 6386 1.296056 GCCTTCCTCTTGCGCGTTAA 61.296 55.000 8.43 2.55 0.00 2.01
758 6398 0.036388 TAAGTGGCGCCTTCCTCTTG 60.036 55.000 29.70 0.00 39.47 3.02
775 6416 2.126618 CCGCTGACTCGCACGTAA 60.127 61.111 0.00 0.00 0.00 3.18
781 6422 2.401195 GAAATGCCGCTGACTCGC 59.599 61.111 0.00 0.00 0.00 5.03
798 6451 4.547905 AGATCGTGTACGGGCGCG 62.548 66.667 22.69 22.69 42.91 6.86
820 6473 7.675619 TGCATGTCTCTTTATATAGGATGGAGA 59.324 37.037 0.00 0.00 0.00 3.71
915 6667 0.443478 TGCTTTGCGTGATCGATGTG 59.557 50.000 0.54 0.00 39.71 3.21
916 6668 1.129251 CTTGCTTTGCGTGATCGATGT 59.871 47.619 0.54 0.00 39.71 3.06
918 6670 0.729116 CCTTGCTTTGCGTGATCGAT 59.271 50.000 0.00 0.00 39.71 3.59
927 6679 1.370900 CACTCGTGCCTTGCTTTGC 60.371 57.895 0.00 0.00 0.00 3.68
951 6703 3.721243 TACGTCCGTGCGTGCGTA 61.721 61.111 11.00 11.50 45.33 4.42
954 6706 3.170585 GAGTACGTCCGTGCGTGC 61.171 66.667 11.00 9.72 45.33 5.34
1053 6828 3.269178 CTTGTGATGCTTCTCCTCCTTC 58.731 50.000 0.88 0.00 0.00 3.46
1164 6945 4.090354 TCAATTGCGTAACTGCGTAAGTAC 59.910 41.667 0.00 0.00 38.56 2.73
1171 6952 1.813896 CCATCAATTGCGTAACTGCG 58.186 50.000 0.00 0.00 37.81 5.18
1202 6992 8.244802 AGTAATTATCAGCACTATAGCTAACCG 58.755 37.037 0.00 0.00 44.54 4.44
1346 7140 0.464036 TCTTCTTGTGGTGCTCGTGT 59.536 50.000 0.00 0.00 0.00 4.49
1454 7254 8.781196 CGGCCGTACATATAAGATATACTGTAT 58.219 37.037 19.50 5.53 0.00 2.29
1455 7255 7.227314 CCGGCCGTACATATAAGATATACTGTA 59.773 40.741 26.12 0.00 0.00 2.74
1456 7256 6.039047 CCGGCCGTACATATAAGATATACTGT 59.961 42.308 26.12 0.00 0.00 3.55
1457 7257 6.039047 ACCGGCCGTACATATAAGATATACTG 59.961 42.308 26.12 3.60 0.00 2.74
1458 7258 6.125029 ACCGGCCGTACATATAAGATATACT 58.875 40.000 26.12 0.00 0.00 2.12
1459 7259 6.382869 ACCGGCCGTACATATAAGATATAC 57.617 41.667 26.12 0.00 0.00 1.47
1460 7260 7.555914 TGTAACCGGCCGTACATATAAGATATA 59.444 37.037 26.12 0.00 0.00 0.86
1461 7261 5.927281 AACCGGCCGTACATATAAGATAT 57.073 39.130 26.12 0.00 0.00 1.63
1462 7262 5.709631 TGTAACCGGCCGTACATATAAGATA 59.290 40.000 26.12 1.06 0.00 1.98
1463 7263 4.523943 TGTAACCGGCCGTACATATAAGAT 59.476 41.667 26.12 2.12 0.00 2.40
1464 7264 3.888323 TGTAACCGGCCGTACATATAAGA 59.112 43.478 26.12 0.09 0.00 2.10
1465 7265 4.241590 TGTAACCGGCCGTACATATAAG 57.758 45.455 26.12 7.62 0.00 1.73
1518 7332 5.528043 ACACATACCAAACAGCAATTCAA 57.472 34.783 0.00 0.00 0.00 2.69
1544 7358 7.348808 ACATACTATACGACTATGTCACGAG 57.651 40.000 0.00 0.00 32.09 4.18
1586 7422 0.819582 GGAGATGTGCCCAAACATGG 59.180 55.000 0.00 0.00 40.87 3.66
1651 7516 3.006752 TGTTGGGCATTTTCAATGGAGAC 59.993 43.478 0.00 0.00 0.00 3.36
1699 7574 1.725164 GACGCGAACCCAAGAAAGTAG 59.275 52.381 15.93 0.00 0.00 2.57
1768 7643 4.278170 TCGGTAGAAGAAAGTAACCACGAA 59.722 41.667 0.00 0.00 0.00 3.85
1807 7682 2.094762 ACGGTAGAATGCAACACTCC 57.905 50.000 0.00 0.00 0.00 3.85
2037 7918 5.931146 AGTTGATTGAGACTTAGCAAGACTG 59.069 40.000 5.85 0.00 33.75 3.51
2058 7939 4.038162 AGTGAGACTTAACGAAGCTCAGTT 59.962 41.667 10.88 10.88 41.55 3.16
2062 7943 3.165124 CGAGTGAGACTTAACGAAGCTC 58.835 50.000 0.00 0.00 36.84 4.09
2141 8023 8.883731 AGTGATAACATGTAATCGAGAAAAAGG 58.116 33.333 0.00 0.00 0.00 3.11
2151 8033 8.812329 GTCTCAGTCAAGTGATAACATGTAATC 58.188 37.037 0.00 0.00 0.00 1.75
2152 8034 8.535335 AGTCTCAGTCAAGTGATAACATGTAAT 58.465 33.333 0.00 0.00 0.00 1.89
2195 8077 1.348036 GGGTGTAGCTTGGTCTCAGTT 59.652 52.381 0.00 0.00 0.00 3.16
2209 8091 7.841282 TTTGGTTCATTCTAATTTGGGTGTA 57.159 32.000 0.00 0.00 0.00 2.90
2235 8117 6.799512 ACTCAAGGTGATGTTTTTCTTCAAG 58.200 36.000 0.00 0.00 33.16 3.02
2236 8118 6.773976 ACTCAAGGTGATGTTTTTCTTCAA 57.226 33.333 0.00 0.00 33.16 2.69
2237 8119 6.773976 AACTCAAGGTGATGTTTTTCTTCA 57.226 33.333 0.00 0.00 0.00 3.02
2238 8120 9.750125 ATTTAACTCAAGGTGATGTTTTTCTTC 57.250 29.630 0.00 0.00 0.00 2.87
2239 8121 9.533253 CATTTAACTCAAGGTGATGTTTTTCTT 57.467 29.630 0.00 0.00 0.00 2.52
2241 8123 9.528018 TTCATTTAACTCAAGGTGATGTTTTTC 57.472 29.630 0.00 0.00 0.00 2.29
2250 8132 6.205464 TGAGCTTCTTCATTTAACTCAAGGTG 59.795 38.462 0.00 0.00 30.24 4.00
2252 8134 6.348868 GGTGAGCTTCTTCATTTAACTCAAGG 60.349 42.308 0.00 0.00 34.73 3.61
2255 8137 5.003804 GGGTGAGCTTCTTCATTTAACTCA 58.996 41.667 0.00 0.00 0.00 3.41
2257 8139 4.985538 TGGGTGAGCTTCTTCATTTAACT 58.014 39.130 0.00 0.00 0.00 2.24
2264 8146 2.376518 AGGAAATGGGTGAGCTTCTTCA 59.623 45.455 0.00 0.00 0.00 3.02
2265 8147 3.078891 AGGAAATGGGTGAGCTTCTTC 57.921 47.619 0.00 0.00 0.00 2.87
2267 8149 3.532641 AAAGGAAATGGGTGAGCTTCT 57.467 42.857 0.00 0.00 0.00 2.85
2272 8154 6.377996 TGATGTTGATAAAGGAAATGGGTGAG 59.622 38.462 0.00 0.00 0.00 3.51
2273 8155 6.252233 TGATGTTGATAAAGGAAATGGGTGA 58.748 36.000 0.00 0.00 0.00 4.02
2274 8156 6.528537 TGATGTTGATAAAGGAAATGGGTG 57.471 37.500 0.00 0.00 0.00 4.61
2275 8157 6.725834 AGTTGATGTTGATAAAGGAAATGGGT 59.274 34.615 0.00 0.00 0.00 4.51
2276 8158 7.123247 AGAGTTGATGTTGATAAAGGAAATGGG 59.877 37.037 0.00 0.00 0.00 4.00
2277 8159 8.059798 AGAGTTGATGTTGATAAAGGAAATGG 57.940 34.615 0.00 0.00 0.00 3.16
2280 8162 7.610305 GGGTAGAGTTGATGTTGATAAAGGAAA 59.390 37.037 0.00 0.00 0.00 3.13
2296 8183 5.491982 AGCTGTCAATAAAGGGTAGAGTTG 58.508 41.667 0.00 0.00 0.00 3.16
2298 8185 5.364157 CCTAGCTGTCAATAAAGGGTAGAGT 59.636 44.000 0.00 0.00 32.00 3.24
2303 8190 3.844211 TGTCCTAGCTGTCAATAAAGGGT 59.156 43.478 0.00 0.00 0.00 4.34
2309 8196 6.808321 ATAACCTTGTCCTAGCTGTCAATA 57.192 37.500 0.00 0.00 0.00 1.90
2317 8204 6.462628 CCAGGTAGTAATAACCTTGTCCTAGC 60.463 46.154 0.00 0.00 45.26 3.42
2318 8205 6.837568 TCCAGGTAGTAATAACCTTGTCCTAG 59.162 42.308 0.00 0.00 45.26 3.02
2323 8210 8.066247 AGATAGTCCAGGTAGTAATAACCTTGT 58.934 37.037 0.00 0.00 45.26 3.16
2335 8222 4.764823 CCTTGAGCTAGATAGTCCAGGTAG 59.235 50.000 0.00 0.00 0.00 3.18
2336 8223 4.730966 CCTTGAGCTAGATAGTCCAGGTA 58.269 47.826 0.00 0.00 0.00 3.08
2337 8224 3.571590 CCTTGAGCTAGATAGTCCAGGT 58.428 50.000 0.00 0.00 0.00 4.00
2338 8225 2.298729 GCCTTGAGCTAGATAGTCCAGG 59.701 54.545 0.00 0.00 38.99 4.45
2339 8226 2.030363 CGCCTTGAGCTAGATAGTCCAG 60.030 54.545 0.00 0.00 40.39 3.86
2340 8227 1.957177 CGCCTTGAGCTAGATAGTCCA 59.043 52.381 0.00 0.00 40.39 4.02
2341 8228 2.030628 GTCGCCTTGAGCTAGATAGTCC 60.031 54.545 0.00 0.00 40.39 3.85
2342 8229 2.882137 AGTCGCCTTGAGCTAGATAGTC 59.118 50.000 0.00 0.00 40.39 2.59
2343 8230 2.938838 AGTCGCCTTGAGCTAGATAGT 58.061 47.619 0.00 0.00 40.39 2.12
2344 8231 3.815962 TGTAGTCGCCTTGAGCTAGATAG 59.184 47.826 0.00 0.00 40.39 2.08
2345 8232 3.816994 TGTAGTCGCCTTGAGCTAGATA 58.183 45.455 0.00 0.00 40.39 1.98
2349 8236 2.758423 TCATTGTAGTCGCCTTGAGCTA 59.242 45.455 0.00 0.00 40.39 3.32
2351 8238 2.010145 TCATTGTAGTCGCCTTGAGC 57.990 50.000 0.00 0.00 38.52 4.26
2364 8251 5.567823 TCATGAGCATGCACAATTTCATTGT 60.568 36.000 21.69 0.00 44.23 2.71
2368 8255 3.759618 TCTCATGAGCATGCACAATTTCA 59.240 39.130 21.69 14.21 38.65 2.69
2369 8256 4.365899 TCTCATGAGCATGCACAATTTC 57.634 40.909 21.69 8.62 38.65 2.17
2372 8259 4.014406 TCTTTCTCATGAGCATGCACAAT 58.986 39.130 21.69 7.88 38.65 2.71
2373 8260 3.414269 TCTTTCTCATGAGCATGCACAA 58.586 40.909 21.69 5.64 38.65 3.33
2375 8262 2.355132 CCTCTTTCTCATGAGCATGCAC 59.645 50.000 21.98 15.08 38.65 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.