Multiple sequence alignment - TraesCS3D01G517100
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3D01G517100 | chr3D | 100.000 | 1931 | 0 | 0 | 1 | 1931 | 600562453 | 600564383 | 0.000000e+00 | 3567.0 |
1 | TraesCS3D01G517100 | chr3D | 100.000 | 416 | 0 | 0 | 2276 | 2691 | 600564728 | 600565143 | 0.000000e+00 | 769.0 |
2 | TraesCS3D01G517100 | chr3D | 79.460 | 1149 | 142 | 58 | 733 | 1839 | 600594226 | 600595322 | 0.000000e+00 | 728.0 |
3 | TraesCS3D01G517100 | chr3D | 78.984 | 1142 | 157 | 53 | 733 | 1839 | 600607651 | 600608744 | 0.000000e+00 | 702.0 |
4 | TraesCS3D01G517100 | chr3D | 83.544 | 79 | 11 | 2 | 147 | 223 | 600591309 | 600591387 | 3.720000e-09 | 73.1 |
5 | TraesCS3D01G517100 | chr3A | 92.199 | 1346 | 85 | 8 | 599 | 1931 | 730280307 | 730278969 | 0.000000e+00 | 1886.0 |
6 | TraesCS3D01G517100 | chr3A | 85.575 | 1227 | 91 | 38 | 646 | 1839 | 730329000 | 730327827 | 0.000000e+00 | 1206.0 |
7 | TraesCS3D01G517100 | chr3A | 78.664 | 1153 | 155 | 60 | 733 | 1839 | 730208853 | 730207746 | 0.000000e+00 | 682.0 |
8 | TraesCS3D01G517100 | chr3A | 85.970 | 670 | 57 | 16 | 5 | 662 | 730336866 | 730336222 | 0.000000e+00 | 682.0 |
9 | TraesCS3D01G517100 | chr3A | 80.085 | 939 | 129 | 36 | 777 | 1691 | 730178511 | 730177607 | 0.000000e+00 | 645.0 |
10 | TraesCS3D01G517100 | chr3A | 82.511 | 669 | 84 | 24 | 733 | 1384 | 730267637 | 730266985 | 8.420000e-155 | 556.0 |
11 | TraesCS3D01G517100 | chr3A | 80.479 | 543 | 40 | 20 | 1 | 494 | 730280874 | 730280349 | 3.300000e-94 | 355.0 |
12 | TraesCS3D01G517100 | chr3B | 85.543 | 1252 | 99 | 44 | 733 | 1931 | 807812711 | 807813933 | 0.000000e+00 | 1234.0 |
13 | TraesCS3D01G517100 | chr3B | 80.648 | 987 | 126 | 41 | 733 | 1693 | 807930180 | 807931127 | 0.000000e+00 | 704.0 |
14 | TraesCS3D01G517100 | chr3B | 78.783 | 674 | 99 | 30 | 733 | 1384 | 807855783 | 807856434 | 1.930000e-111 | 412.0 |
15 | TraesCS3D01G517100 | chr3B | 85.714 | 203 | 23 | 5 | 248 | 446 | 807852695 | 807852895 | 2.710000e-50 | 209.0 |
16 | TraesCS3D01G517100 | chr1D | 84.078 | 358 | 39 | 9 | 2345 | 2690 | 44372206 | 44371855 | 2.000000e-86 | 329.0 |
17 | TraesCS3D01G517100 | chr1D | 82.961 | 358 | 44 | 9 | 2345 | 2690 | 43825788 | 43825436 | 9.360000e-80 | 307.0 |
18 | TraesCS3D01G517100 | chr1A | 83.871 | 341 | 39 | 8 | 2345 | 2674 | 43953623 | 43953288 | 7.230000e-81 | 311.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3D01G517100 | chr3D | 600562453 | 600565143 | 2690 | False | 2168.00 | 3567 | 100.0000 | 1 | 2691 | 2 | chr3D.!!$F2 | 2690 |
1 | TraesCS3D01G517100 | chr3D | 600607651 | 600608744 | 1093 | False | 702.00 | 702 | 78.9840 | 733 | 1839 | 1 | chr3D.!!$F1 | 1106 |
2 | TraesCS3D01G517100 | chr3D | 600591309 | 600595322 | 4013 | False | 400.55 | 728 | 81.5020 | 147 | 1839 | 2 | chr3D.!!$F3 | 1692 |
3 | TraesCS3D01G517100 | chr3A | 730327827 | 730329000 | 1173 | True | 1206.00 | 1206 | 85.5750 | 646 | 1839 | 1 | chr3A.!!$R4 | 1193 |
4 | TraesCS3D01G517100 | chr3A | 730278969 | 730280874 | 1905 | True | 1120.50 | 1886 | 86.3390 | 1 | 1931 | 2 | chr3A.!!$R6 | 1930 |
5 | TraesCS3D01G517100 | chr3A | 730207746 | 730208853 | 1107 | True | 682.00 | 682 | 78.6640 | 733 | 1839 | 1 | chr3A.!!$R2 | 1106 |
6 | TraesCS3D01G517100 | chr3A | 730336222 | 730336866 | 644 | True | 682.00 | 682 | 85.9700 | 5 | 662 | 1 | chr3A.!!$R5 | 657 |
7 | TraesCS3D01G517100 | chr3A | 730177607 | 730178511 | 904 | True | 645.00 | 645 | 80.0850 | 777 | 1691 | 1 | chr3A.!!$R1 | 914 |
8 | TraesCS3D01G517100 | chr3A | 730266985 | 730267637 | 652 | True | 556.00 | 556 | 82.5110 | 733 | 1384 | 1 | chr3A.!!$R3 | 651 |
9 | TraesCS3D01G517100 | chr3B | 807812711 | 807813933 | 1222 | False | 1234.00 | 1234 | 85.5430 | 733 | 1931 | 1 | chr3B.!!$F1 | 1198 |
10 | TraesCS3D01G517100 | chr3B | 807930180 | 807931127 | 947 | False | 704.00 | 704 | 80.6480 | 733 | 1693 | 1 | chr3B.!!$F2 | 960 |
11 | TraesCS3D01G517100 | chr3B | 807852695 | 807856434 | 3739 | False | 310.50 | 412 | 82.2485 | 248 | 1384 | 2 | chr3B.!!$F3 | 1136 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
876 | 6131 | 0.790814 | GCAAGAAGCCACACGTACTC | 59.209 | 55.0 | 0.0 | 0.0 | 37.23 | 2.59 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2395 | 7788 | 0.039618 | ATGACAACTTCGGGGGCAAT | 59.96 | 50.0 | 0.0 | 0.0 | 0.0 | 3.56 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
45 | 46 | 4.890088 | ACCAAATACGAGAGCTGTTTGTA | 58.110 | 39.130 | 0.00 | 0.00 | 0.00 | 2.41 |
46 | 47 | 4.689345 | ACCAAATACGAGAGCTGTTTGTAC | 59.311 | 41.667 | 0.00 | 0.00 | 0.00 | 2.90 |
47 | 48 | 4.929808 | CCAAATACGAGAGCTGTTTGTACT | 59.070 | 41.667 | 0.00 | 0.00 | 0.00 | 2.73 |
48 | 49 | 5.408604 | CCAAATACGAGAGCTGTTTGTACTT | 59.591 | 40.000 | 0.00 | 0.00 | 0.00 | 2.24 |
49 | 50 | 6.073222 | CCAAATACGAGAGCTGTTTGTACTTT | 60.073 | 38.462 | 0.00 | 0.00 | 0.00 | 2.66 |
50 | 51 | 6.707599 | AATACGAGAGCTGTTTGTACTTTC | 57.292 | 37.500 | 0.00 | 0.00 | 0.00 | 2.62 |
51 | 52 | 3.391049 | ACGAGAGCTGTTTGTACTTTCC | 58.609 | 45.455 | 0.00 | 0.00 | 0.00 | 3.13 |
60 | 61 | 3.243367 | TGTTTGTACTTTCCACTGCATGC | 60.243 | 43.478 | 11.82 | 11.82 | 0.00 | 4.06 |
67 | 68 | 5.473066 | ACTTTCCACTGCATGCTATTTTT | 57.527 | 34.783 | 20.33 | 0.00 | 0.00 | 1.94 |
129 | 133 | 8.658499 | AATCTAATACTTTTGGCTTACTACGG | 57.342 | 34.615 | 0.00 | 0.00 | 0.00 | 4.02 |
135 | 139 | 5.233225 | ACTTTTGGCTTACTACGGTAACTC | 58.767 | 41.667 | 0.00 | 0.00 | 34.61 | 3.01 |
136 | 140 | 4.870123 | TTTGGCTTACTACGGTAACTCA | 57.130 | 40.909 | 0.00 | 0.00 | 34.61 | 3.41 |
137 | 141 | 5.410355 | TTTGGCTTACTACGGTAACTCAT | 57.590 | 39.130 | 0.00 | 0.00 | 34.61 | 2.90 |
138 | 142 | 5.410355 | TTGGCTTACTACGGTAACTCATT | 57.590 | 39.130 | 0.00 | 0.00 | 34.61 | 2.57 |
240 | 246 | 6.093495 | ACCGAATACCATGTAAACACATCAAG | 59.907 | 38.462 | 0.00 | 0.00 | 0.00 | 3.02 |
333 | 2835 | 3.561143 | TGTTAACAAGAACCATGTGGCT | 58.439 | 40.909 | 5.64 | 0.00 | 39.32 | 4.75 |
368 | 2894 | 3.069872 | ACAGCAGCACATTTTCATTTGGA | 59.930 | 39.130 | 0.00 | 0.00 | 0.00 | 3.53 |
434 | 2962 | 7.229907 | GGAAACAAGAATAACTTTACTGGGTGA | 59.770 | 37.037 | 0.00 | 0.00 | 36.61 | 4.02 |
437 | 2965 | 7.458397 | ACAAGAATAACTTTACTGGGTGATGA | 58.542 | 34.615 | 0.00 | 0.00 | 36.61 | 2.92 |
452 | 2989 | 3.511146 | GGTGATGAAAAGAAATGCTCCCA | 59.489 | 43.478 | 0.00 | 0.00 | 0.00 | 4.37 |
453 | 2990 | 4.488879 | GTGATGAAAAGAAATGCTCCCAC | 58.511 | 43.478 | 0.00 | 0.00 | 0.00 | 4.61 |
454 | 2991 | 3.511146 | TGATGAAAAGAAATGCTCCCACC | 59.489 | 43.478 | 0.00 | 0.00 | 0.00 | 4.61 |
461 | 2998 | 1.963515 | GAAATGCTCCCACCAGTTGTT | 59.036 | 47.619 | 0.00 | 0.00 | 0.00 | 2.83 |
476 | 3019 | 4.761745 | CAGTTGTTGGATTATCGCATACG | 58.238 | 43.478 | 0.00 | 0.00 | 42.01 | 3.06 |
501 | 3058 | 6.648879 | TTTCCCAAAAGAAAGACCACTATG | 57.351 | 37.500 | 0.00 | 0.00 | 32.12 | 2.23 |
502 | 3059 | 4.662278 | TCCCAAAAGAAAGACCACTATGG | 58.338 | 43.478 | 0.00 | 0.00 | 45.02 | 2.74 |
503 | 3060 | 3.763897 | CCCAAAAGAAAGACCACTATGGG | 59.236 | 47.826 | 0.00 | 0.00 | 43.37 | 4.00 |
504 | 3061 | 4.508405 | CCCAAAAGAAAGACCACTATGGGA | 60.508 | 45.833 | 0.00 | 0.00 | 43.37 | 4.37 |
505 | 3062 | 4.702131 | CCAAAAGAAAGACCACTATGGGAG | 59.298 | 45.833 | 0.00 | 0.00 | 43.37 | 4.30 |
506 | 3063 | 4.576330 | AAAGAAAGACCACTATGGGAGG | 57.424 | 45.455 | 0.00 | 0.00 | 43.37 | 4.30 |
507 | 3064 | 2.482494 | AGAAAGACCACTATGGGAGGG | 58.518 | 52.381 | 0.00 | 0.00 | 43.37 | 4.30 |
527 | 3095 | 2.552315 | GGAGAACACGAATCTTGGCAAA | 59.448 | 45.455 | 0.00 | 0.00 | 0.00 | 3.68 |
546 | 3114 | 4.171005 | CAAATTTGCATGTCAGGCTACAG | 58.829 | 43.478 | 11.26 | 0.00 | 31.70 | 2.74 |
547 | 3115 | 2.566833 | TTTGCATGTCAGGCTACAGT | 57.433 | 45.000 | 11.26 | 0.00 | 31.70 | 3.55 |
548 | 3116 | 2.566833 | TTGCATGTCAGGCTACAGTT | 57.433 | 45.000 | 11.26 | 0.00 | 31.70 | 3.16 |
572 | 3140 | 5.825593 | ATGTACTCCCTCTGTCTCAAAAA | 57.174 | 39.130 | 0.00 | 0.00 | 0.00 | 1.94 |
573 | 3141 | 4.957296 | TGTACTCCCTCTGTCTCAAAAAC | 58.043 | 43.478 | 0.00 | 0.00 | 0.00 | 2.43 |
574 | 3142 | 3.113260 | ACTCCCTCTGTCTCAAAAACG | 57.887 | 47.619 | 0.00 | 0.00 | 0.00 | 3.60 |
654 | 3222 | 7.652909 | CACTAAGAGATTCTGCTAAGAAGGATG | 59.347 | 40.741 | 0.00 | 0.00 | 45.50 | 3.51 |
674 | 4105 | 5.066246 | GGATGCTCTCCTTTTTCTCTTCATG | 59.934 | 44.000 | 0.00 | 0.00 | 41.29 | 3.07 |
697 | 4128 | 2.983402 | TTTCTCTACCGAGTGTCGTG | 57.017 | 50.000 | 0.00 | 0.00 | 38.40 | 4.35 |
705 | 4136 | 0.793478 | CCGAGTGTCGTGAAGTAGCG | 60.793 | 60.000 | 0.00 | 0.00 | 38.40 | 4.26 |
706 | 4137 | 0.793478 | CGAGTGTCGTGAAGTAGCGG | 60.793 | 60.000 | 0.00 | 0.00 | 34.72 | 5.52 |
820 | 6047 | 1.852895 | GTCACTCGCCACGCTATAAAG | 59.147 | 52.381 | 0.00 | 0.00 | 0.00 | 1.85 |
847 | 6082 | 2.159707 | CGTCCTCCAAACATTTGCTACG | 60.160 | 50.000 | 0.00 | 2.73 | 36.86 | 3.51 |
862 | 6117 | 1.432514 | CTACGAGCAAGCAAGCAAGA | 58.567 | 50.000 | 3.19 | 0.00 | 36.85 | 3.02 |
875 | 6130 | 2.914379 | GCAAGAAGCCACACGTACT | 58.086 | 52.632 | 0.00 | 0.00 | 37.23 | 2.73 |
876 | 6131 | 0.790814 | GCAAGAAGCCACACGTACTC | 59.209 | 55.000 | 0.00 | 0.00 | 37.23 | 2.59 |
944 | 6222 | 2.202837 | GGGCTACTACAACGGCGG | 60.203 | 66.667 | 13.24 | 0.00 | 0.00 | 6.13 |
945 | 6223 | 2.889018 | GGCTACTACAACGGCGGC | 60.889 | 66.667 | 13.24 | 0.00 | 0.00 | 6.53 |
946 | 6224 | 3.252484 | GCTACTACAACGGCGGCG | 61.252 | 66.667 | 31.06 | 31.06 | 0.00 | 6.46 |
971 | 6249 | 3.695830 | GACCATGTCCTACTCCAACAA | 57.304 | 47.619 | 0.00 | 0.00 | 0.00 | 2.83 |
987 | 6265 | 2.370281 | ACAACGATGAGTGCTTCGAT | 57.630 | 45.000 | 0.00 | 0.00 | 42.36 | 3.59 |
1317 | 6655 | 1.770518 | GCAGGGCCAGGGGTACTAT | 60.771 | 63.158 | 6.18 | 0.00 | 0.00 | 2.12 |
1564 | 6936 | 3.461773 | CACCAGATCGAGGCCGGT | 61.462 | 66.667 | 1.90 | 0.00 | 36.24 | 5.28 |
1841 | 7233 | 3.164576 | GCTGCATGCGTACGTTCA | 58.835 | 55.556 | 17.90 | 7.63 | 0.00 | 3.18 |
1853 | 7245 | 2.182825 | GTACGTTCATGCTACCAGTCG | 58.817 | 52.381 | 0.00 | 0.00 | 0.00 | 4.18 |
1876 | 7268 | 1.134250 | TGCTCTGTGGTGTAACTTGCA | 60.134 | 47.619 | 0.00 | 0.00 | 36.74 | 4.08 |
1878 | 7270 | 3.244387 | TGCTCTGTGGTGTAACTTGCATA | 60.244 | 43.478 | 0.00 | 0.00 | 36.74 | 3.14 |
2381 | 7774 | 5.705609 | ATAAAACGGCTATTGCTTATGGG | 57.294 | 39.130 | 0.00 | 0.00 | 39.59 | 4.00 |
2382 | 7775 | 1.981256 | AACGGCTATTGCTTATGGGG | 58.019 | 50.000 | 0.00 | 0.00 | 39.59 | 4.96 |
2383 | 7776 | 0.843984 | ACGGCTATTGCTTATGGGGT | 59.156 | 50.000 | 0.00 | 0.00 | 39.59 | 4.95 |
2384 | 7777 | 2.051692 | ACGGCTATTGCTTATGGGGTA | 58.948 | 47.619 | 0.00 | 0.00 | 39.59 | 3.69 |
2385 | 7778 | 2.224450 | ACGGCTATTGCTTATGGGGTAC | 60.224 | 50.000 | 0.00 | 0.00 | 39.59 | 3.34 |
2386 | 7779 | 2.423577 | GGCTATTGCTTATGGGGTACG | 58.576 | 52.381 | 0.00 | 0.00 | 39.59 | 3.67 |
2387 | 7780 | 2.224450 | GGCTATTGCTTATGGGGTACGT | 60.224 | 50.000 | 0.00 | 0.00 | 39.59 | 3.57 |
2388 | 7781 | 3.064931 | GCTATTGCTTATGGGGTACGTC | 58.935 | 50.000 | 0.00 | 0.00 | 36.03 | 4.34 |
2389 | 7782 | 3.493699 | GCTATTGCTTATGGGGTACGTCA | 60.494 | 47.826 | 0.00 | 0.00 | 36.03 | 4.35 |
2390 | 7783 | 2.389962 | TTGCTTATGGGGTACGTCAC | 57.610 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
2391 | 7784 | 0.173935 | TGCTTATGGGGTACGTCACG | 59.826 | 55.000 | 0.00 | 0.00 | 0.00 | 4.35 |
2392 | 7785 | 0.457035 | GCTTATGGGGTACGTCACGA | 59.543 | 55.000 | 2.91 | 0.00 | 0.00 | 4.35 |
2393 | 7786 | 1.135024 | GCTTATGGGGTACGTCACGAA | 60.135 | 52.381 | 2.91 | 0.00 | 0.00 | 3.85 |
2394 | 7787 | 2.674747 | GCTTATGGGGTACGTCACGAAA | 60.675 | 50.000 | 2.91 | 0.00 | 0.00 | 3.46 |
2395 | 7788 | 3.587923 | CTTATGGGGTACGTCACGAAAA | 58.412 | 45.455 | 2.91 | 0.00 | 0.00 | 2.29 |
2396 | 7789 | 2.773993 | ATGGGGTACGTCACGAAAAT | 57.226 | 45.000 | 2.91 | 0.00 | 0.00 | 1.82 |
2397 | 7790 | 2.547299 | TGGGGTACGTCACGAAAATT | 57.453 | 45.000 | 2.91 | 0.00 | 0.00 | 1.82 |
2398 | 7791 | 2.144730 | TGGGGTACGTCACGAAAATTG | 58.855 | 47.619 | 2.91 | 0.00 | 0.00 | 2.32 |
2399 | 7792 | 1.135888 | GGGGTACGTCACGAAAATTGC | 60.136 | 52.381 | 2.91 | 0.00 | 0.00 | 3.56 |
2400 | 7793 | 1.135888 | GGGTACGTCACGAAAATTGCC | 60.136 | 52.381 | 2.91 | 0.00 | 0.00 | 4.52 |
2401 | 7794 | 1.135888 | GGTACGTCACGAAAATTGCCC | 60.136 | 52.381 | 2.91 | 0.00 | 0.00 | 5.36 |
2402 | 7795 | 1.135888 | GTACGTCACGAAAATTGCCCC | 60.136 | 52.381 | 2.91 | 0.00 | 0.00 | 5.80 |
2403 | 7796 | 1.211709 | CGTCACGAAAATTGCCCCC | 59.788 | 57.895 | 0.00 | 0.00 | 0.00 | 5.40 |
2404 | 7797 | 1.211709 | GTCACGAAAATTGCCCCCG | 59.788 | 57.895 | 0.00 | 0.00 | 0.00 | 5.73 |
2405 | 7798 | 1.073373 | TCACGAAAATTGCCCCCGA | 59.927 | 52.632 | 0.00 | 0.00 | 0.00 | 5.14 |
2406 | 7799 | 0.537600 | TCACGAAAATTGCCCCCGAA | 60.538 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2407 | 7800 | 0.109319 | CACGAAAATTGCCCCCGAAG | 60.109 | 55.000 | 0.00 | 0.00 | 0.00 | 3.79 |
2408 | 7801 | 0.538746 | ACGAAAATTGCCCCCGAAGT | 60.539 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
2409 | 7802 | 0.601057 | CGAAAATTGCCCCCGAAGTT | 59.399 | 50.000 | 0.00 | 0.00 | 0.00 | 2.66 |
2410 | 7803 | 1.668628 | CGAAAATTGCCCCCGAAGTTG | 60.669 | 52.381 | 0.00 | 0.00 | 0.00 | 3.16 |
2411 | 7804 | 1.343142 | GAAAATTGCCCCCGAAGTTGT | 59.657 | 47.619 | 0.00 | 0.00 | 0.00 | 3.32 |
2412 | 7805 | 0.966179 | AAATTGCCCCCGAAGTTGTC | 59.034 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
2413 | 7806 | 0.178975 | AATTGCCCCCGAAGTTGTCA | 60.179 | 50.000 | 0.00 | 0.00 | 0.00 | 3.58 |
2414 | 7807 | 0.039618 | ATTGCCCCCGAAGTTGTCAT | 59.960 | 50.000 | 0.00 | 0.00 | 0.00 | 3.06 |
2415 | 7808 | 0.693622 | TTGCCCCCGAAGTTGTCATA | 59.306 | 50.000 | 0.00 | 0.00 | 0.00 | 2.15 |
2416 | 7809 | 0.693622 | TGCCCCCGAAGTTGTCATAA | 59.306 | 50.000 | 0.00 | 0.00 | 0.00 | 1.90 |
2417 | 7810 | 1.074084 | TGCCCCCGAAGTTGTCATAAA | 59.926 | 47.619 | 0.00 | 0.00 | 0.00 | 1.40 |
2418 | 7811 | 2.291282 | TGCCCCCGAAGTTGTCATAAAT | 60.291 | 45.455 | 0.00 | 0.00 | 0.00 | 1.40 |
2419 | 7812 | 2.758423 | GCCCCCGAAGTTGTCATAAATT | 59.242 | 45.455 | 0.00 | 0.00 | 0.00 | 1.82 |
2420 | 7813 | 3.949113 | GCCCCCGAAGTTGTCATAAATTA | 59.051 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
2421 | 7814 | 4.201980 | GCCCCCGAAGTTGTCATAAATTAC | 60.202 | 45.833 | 0.00 | 0.00 | 0.00 | 1.89 |
2422 | 7815 | 4.337274 | CCCCCGAAGTTGTCATAAATTACC | 59.663 | 45.833 | 0.00 | 0.00 | 0.00 | 2.85 |
2423 | 7816 | 4.337274 | CCCCGAAGTTGTCATAAATTACCC | 59.663 | 45.833 | 0.00 | 0.00 | 0.00 | 3.69 |
2424 | 7817 | 4.944930 | CCCGAAGTTGTCATAAATTACCCA | 59.055 | 41.667 | 0.00 | 0.00 | 0.00 | 4.51 |
2425 | 7818 | 5.163693 | CCCGAAGTTGTCATAAATTACCCAC | 60.164 | 44.000 | 0.00 | 0.00 | 0.00 | 4.61 |
2426 | 7819 | 5.413213 | CCGAAGTTGTCATAAATTACCCACA | 59.587 | 40.000 | 0.00 | 0.00 | 0.00 | 4.17 |
2427 | 7820 | 6.072397 | CCGAAGTTGTCATAAATTACCCACAA | 60.072 | 38.462 | 0.00 | 0.00 | 0.00 | 3.33 |
2428 | 7821 | 7.362574 | CCGAAGTTGTCATAAATTACCCACAAT | 60.363 | 37.037 | 0.00 | 0.00 | 0.00 | 2.71 |
2429 | 7822 | 7.696453 | CGAAGTTGTCATAAATTACCCACAATC | 59.304 | 37.037 | 0.00 | 0.00 | 0.00 | 2.67 |
2430 | 7823 | 7.404671 | AGTTGTCATAAATTACCCACAATCC | 57.595 | 36.000 | 0.00 | 0.00 | 0.00 | 3.01 |
2431 | 7824 | 7.182060 | AGTTGTCATAAATTACCCACAATCCT | 58.818 | 34.615 | 0.00 | 0.00 | 0.00 | 3.24 |
2432 | 7825 | 8.333235 | AGTTGTCATAAATTACCCACAATCCTA | 58.667 | 33.333 | 0.00 | 0.00 | 0.00 | 2.94 |
2433 | 7826 | 9.131791 | GTTGTCATAAATTACCCACAATCCTAT | 57.868 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
2434 | 7827 | 8.918202 | TGTCATAAATTACCCACAATCCTATC | 57.082 | 34.615 | 0.00 | 0.00 | 0.00 | 2.08 |
2435 | 7828 | 8.498575 | TGTCATAAATTACCCACAATCCTATCA | 58.501 | 33.333 | 0.00 | 0.00 | 0.00 | 2.15 |
2436 | 7829 | 9.349713 | GTCATAAATTACCCACAATCCTATCAA | 57.650 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
2441 | 7834 | 9.936329 | AAATTACCCACAATCCTATCAATAAGT | 57.064 | 29.630 | 0.00 | 0.00 | 0.00 | 2.24 |
2442 | 7835 | 8.924511 | ATTACCCACAATCCTATCAATAAGTG | 57.075 | 34.615 | 0.00 | 0.00 | 0.00 | 3.16 |
2443 | 7836 | 6.575244 | ACCCACAATCCTATCAATAAGTGA | 57.425 | 37.500 | 0.00 | 0.00 | 41.67 | 3.41 |
2444 | 7837 | 6.969043 | ACCCACAATCCTATCAATAAGTGAA | 58.031 | 36.000 | 0.00 | 0.00 | 40.50 | 3.18 |
2445 | 7838 | 7.056635 | ACCCACAATCCTATCAATAAGTGAAG | 58.943 | 38.462 | 0.00 | 0.00 | 40.50 | 3.02 |
2446 | 7839 | 6.488006 | CCCACAATCCTATCAATAAGTGAAGG | 59.512 | 42.308 | 0.00 | 0.00 | 40.50 | 3.46 |
2447 | 7840 | 7.282585 | CCACAATCCTATCAATAAGTGAAGGA | 58.717 | 38.462 | 9.55 | 9.55 | 42.59 | 3.36 |
2448 | 7841 | 7.775093 | CCACAATCCTATCAATAAGTGAAGGAA | 59.225 | 37.037 | 10.57 | 0.51 | 42.14 | 3.36 |
2449 | 7842 | 9.177608 | CACAATCCTATCAATAAGTGAAGGAAA | 57.822 | 33.333 | 10.57 | 0.00 | 42.14 | 3.13 |
2450 | 7843 | 9.178758 | ACAATCCTATCAATAAGTGAAGGAAAC | 57.821 | 33.333 | 10.57 | 0.00 | 42.14 | 2.78 |
2451 | 7844 | 9.401058 | CAATCCTATCAATAAGTGAAGGAAACT | 57.599 | 33.333 | 10.57 | 0.00 | 42.14 | 2.66 |
2482 | 7875 | 4.665281 | TTTTTCAAAGTTGTCGTCGTCA | 57.335 | 36.364 | 0.00 | 0.00 | 0.00 | 4.35 |
2483 | 7876 | 3.918258 | TTTCAAAGTTGTCGTCGTCAG | 57.082 | 42.857 | 0.00 | 0.00 | 0.00 | 3.51 |
2484 | 7877 | 1.847818 | TCAAAGTTGTCGTCGTCAGG | 58.152 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
2485 | 7878 | 1.135527 | TCAAAGTTGTCGTCGTCAGGT | 59.864 | 47.619 | 0.00 | 0.00 | 0.00 | 4.00 |
2486 | 7879 | 1.931172 | CAAAGTTGTCGTCGTCAGGTT | 59.069 | 47.619 | 0.00 | 0.00 | 0.00 | 3.50 |
2487 | 7880 | 1.849097 | AAGTTGTCGTCGTCAGGTTC | 58.151 | 50.000 | 0.00 | 0.00 | 0.00 | 3.62 |
2488 | 7881 | 0.317603 | AGTTGTCGTCGTCAGGTTCG | 60.318 | 55.000 | 0.00 | 0.00 | 0.00 | 3.95 |
2489 | 7882 | 1.008194 | TTGTCGTCGTCAGGTTCGG | 60.008 | 57.895 | 0.00 | 0.00 | 0.00 | 4.30 |
2490 | 7883 | 2.804090 | GTCGTCGTCAGGTTCGGC | 60.804 | 66.667 | 0.00 | 0.00 | 0.00 | 5.54 |
2491 | 7884 | 2.981909 | TCGTCGTCAGGTTCGGCT | 60.982 | 61.111 | 0.00 | 0.00 | 0.00 | 5.52 |
2492 | 7885 | 2.504244 | CGTCGTCAGGTTCGGCTC | 60.504 | 66.667 | 0.00 | 0.00 | 0.00 | 4.70 |
2493 | 7886 | 2.963371 | GTCGTCAGGTTCGGCTCT | 59.037 | 61.111 | 0.00 | 0.00 | 0.00 | 4.09 |
2494 | 7887 | 1.289380 | GTCGTCAGGTTCGGCTCTT | 59.711 | 57.895 | 0.00 | 0.00 | 0.00 | 2.85 |
2495 | 7888 | 0.524862 | GTCGTCAGGTTCGGCTCTTA | 59.475 | 55.000 | 0.00 | 0.00 | 0.00 | 2.10 |
2496 | 7889 | 1.134560 | GTCGTCAGGTTCGGCTCTTAT | 59.865 | 52.381 | 0.00 | 0.00 | 0.00 | 1.73 |
2497 | 7890 | 2.357009 | GTCGTCAGGTTCGGCTCTTATA | 59.643 | 50.000 | 0.00 | 0.00 | 0.00 | 0.98 |
2498 | 7891 | 2.357009 | TCGTCAGGTTCGGCTCTTATAC | 59.643 | 50.000 | 0.00 | 0.00 | 0.00 | 1.47 |
2499 | 7892 | 2.728922 | GTCAGGTTCGGCTCTTATACG | 58.271 | 52.381 | 0.00 | 0.00 | 0.00 | 3.06 |
2500 | 7893 | 2.357009 | GTCAGGTTCGGCTCTTATACGA | 59.643 | 50.000 | 0.00 | 0.00 | 34.47 | 3.43 |
2501 | 7894 | 3.004524 | GTCAGGTTCGGCTCTTATACGAT | 59.995 | 47.826 | 0.00 | 0.00 | 36.43 | 3.73 |
2502 | 7895 | 3.004419 | TCAGGTTCGGCTCTTATACGATG | 59.996 | 47.826 | 0.00 | 0.00 | 36.43 | 3.84 |
2503 | 7896 | 3.004419 | CAGGTTCGGCTCTTATACGATGA | 59.996 | 47.826 | 0.00 | 0.00 | 36.43 | 2.92 |
2504 | 7897 | 3.827302 | AGGTTCGGCTCTTATACGATGAT | 59.173 | 43.478 | 0.00 | 0.00 | 36.43 | 2.45 |
2505 | 7898 | 5.008331 | AGGTTCGGCTCTTATACGATGATA | 58.992 | 41.667 | 0.00 | 0.00 | 36.43 | 2.15 |
2506 | 7899 | 5.094134 | GGTTCGGCTCTTATACGATGATAC | 58.906 | 45.833 | 0.00 | 0.00 | 36.43 | 2.24 |
2507 | 7900 | 4.959596 | TCGGCTCTTATACGATGATACC | 57.040 | 45.455 | 0.00 | 0.00 | 0.00 | 2.73 |
2508 | 7901 | 3.693085 | TCGGCTCTTATACGATGATACCC | 59.307 | 47.826 | 0.00 | 0.00 | 0.00 | 3.69 |
2509 | 7902 | 3.695060 | CGGCTCTTATACGATGATACCCT | 59.305 | 47.826 | 0.00 | 0.00 | 0.00 | 4.34 |
2510 | 7903 | 4.158025 | CGGCTCTTATACGATGATACCCTT | 59.842 | 45.833 | 0.00 | 0.00 | 0.00 | 3.95 |
2511 | 7904 | 5.356190 | CGGCTCTTATACGATGATACCCTTA | 59.644 | 44.000 | 0.00 | 0.00 | 0.00 | 2.69 |
2512 | 7905 | 6.562518 | GGCTCTTATACGATGATACCCTTAC | 58.437 | 44.000 | 0.00 | 0.00 | 0.00 | 2.34 |
2513 | 7906 | 6.152323 | GGCTCTTATACGATGATACCCTTACA | 59.848 | 42.308 | 0.00 | 0.00 | 0.00 | 2.41 |
2514 | 7907 | 7.147880 | GGCTCTTATACGATGATACCCTTACAT | 60.148 | 40.741 | 0.00 | 0.00 | 0.00 | 2.29 |
2515 | 7908 | 8.900781 | GCTCTTATACGATGATACCCTTACATA | 58.099 | 37.037 | 0.00 | 0.00 | 0.00 | 2.29 |
2523 | 7916 | 9.475620 | ACGATGATACCCTTACATATATCAGAA | 57.524 | 33.333 | 0.00 | 0.00 | 37.44 | 3.02 |
2524 | 7917 | 9.958234 | CGATGATACCCTTACATATATCAGAAG | 57.042 | 37.037 | 0.00 | 0.00 | 37.44 | 2.85 |
2530 | 7923 | 6.114187 | CCTTACATATATCAGAAGGGCACA | 57.886 | 41.667 | 8.20 | 0.00 | 34.26 | 4.57 |
2531 | 7924 | 6.169094 | CCTTACATATATCAGAAGGGCACAG | 58.831 | 44.000 | 8.20 | 0.00 | 34.26 | 3.66 |
2532 | 7925 | 4.630644 | ACATATATCAGAAGGGCACAGG | 57.369 | 45.455 | 0.00 | 0.00 | 0.00 | 4.00 |
2533 | 7926 | 3.976654 | ACATATATCAGAAGGGCACAGGT | 59.023 | 43.478 | 0.00 | 0.00 | 0.00 | 4.00 |
2534 | 7927 | 5.155161 | ACATATATCAGAAGGGCACAGGTA | 58.845 | 41.667 | 0.00 | 0.00 | 0.00 | 3.08 |
2535 | 7928 | 5.012148 | ACATATATCAGAAGGGCACAGGTAC | 59.988 | 44.000 | 0.00 | 0.00 | 0.00 | 3.34 |
2536 | 7929 | 0.912486 | ATCAGAAGGGCACAGGTACC | 59.088 | 55.000 | 2.73 | 2.73 | 0.00 | 3.34 |
2537 | 7930 | 0.472925 | TCAGAAGGGCACAGGTACCA | 60.473 | 55.000 | 15.94 | 0.00 | 0.00 | 3.25 |
2538 | 7931 | 0.321653 | CAGAAGGGCACAGGTACCAC | 60.322 | 60.000 | 15.94 | 0.00 | 0.00 | 4.16 |
2539 | 7932 | 0.766674 | AGAAGGGCACAGGTACCACA | 60.767 | 55.000 | 15.94 | 0.00 | 0.00 | 4.17 |
2540 | 7933 | 0.109723 | GAAGGGCACAGGTACCACAA | 59.890 | 55.000 | 15.94 | 0.00 | 0.00 | 3.33 |
2541 | 7934 | 0.777446 | AAGGGCACAGGTACCACAAT | 59.223 | 50.000 | 15.94 | 0.00 | 0.00 | 2.71 |
2542 | 7935 | 1.663911 | AGGGCACAGGTACCACAATA | 58.336 | 50.000 | 15.94 | 0.00 | 0.00 | 1.90 |
2543 | 7936 | 1.559682 | AGGGCACAGGTACCACAATAG | 59.440 | 52.381 | 15.94 | 0.00 | 0.00 | 1.73 |
2544 | 7937 | 1.379527 | GGCACAGGTACCACAATAGC | 58.620 | 55.000 | 15.94 | 8.79 | 0.00 | 2.97 |
2545 | 7938 | 1.065418 | GGCACAGGTACCACAATAGCT | 60.065 | 52.381 | 15.94 | 0.00 | 33.13 | 3.32 |
2546 | 7939 | 2.169769 | GGCACAGGTACCACAATAGCTA | 59.830 | 50.000 | 15.94 | 0.00 | 31.70 | 3.32 |
2547 | 7940 | 3.458189 | GCACAGGTACCACAATAGCTAG | 58.542 | 50.000 | 15.94 | 0.00 | 31.70 | 3.42 |
2548 | 7941 | 3.132289 | GCACAGGTACCACAATAGCTAGA | 59.868 | 47.826 | 15.94 | 0.00 | 31.70 | 2.43 |
2549 | 7942 | 4.737946 | GCACAGGTACCACAATAGCTAGAG | 60.738 | 50.000 | 15.94 | 0.00 | 31.70 | 2.43 |
2550 | 7943 | 3.385111 | ACAGGTACCACAATAGCTAGAGC | 59.615 | 47.826 | 15.94 | 0.00 | 42.49 | 4.09 |
2551 | 7944 | 2.966516 | AGGTACCACAATAGCTAGAGCC | 59.033 | 50.000 | 15.94 | 0.00 | 43.38 | 4.70 |
2552 | 7945 | 2.288273 | GGTACCACAATAGCTAGAGCCG | 60.288 | 54.545 | 7.15 | 0.00 | 43.38 | 5.52 |
2553 | 7946 | 0.105039 | ACCACAATAGCTAGAGCCGC | 59.895 | 55.000 | 0.00 | 0.00 | 43.38 | 6.53 |
2554 | 7947 | 0.601311 | CCACAATAGCTAGAGCCGCC | 60.601 | 60.000 | 0.00 | 0.00 | 43.38 | 6.13 |
2555 | 7948 | 0.941463 | CACAATAGCTAGAGCCGCCG | 60.941 | 60.000 | 0.00 | 0.00 | 43.38 | 6.46 |
2556 | 7949 | 1.364171 | CAATAGCTAGAGCCGCCGT | 59.636 | 57.895 | 0.00 | 0.00 | 43.38 | 5.68 |
2557 | 7950 | 0.664767 | CAATAGCTAGAGCCGCCGTC | 60.665 | 60.000 | 0.00 | 0.00 | 43.38 | 4.79 |
2558 | 7951 | 0.824182 | AATAGCTAGAGCCGCCGTCT | 60.824 | 55.000 | 0.00 | 0.00 | 43.38 | 4.18 |
2559 | 7952 | 0.824182 | ATAGCTAGAGCCGCCGTCTT | 60.824 | 55.000 | 0.00 | 0.00 | 43.38 | 3.01 |
2560 | 7953 | 1.445716 | TAGCTAGAGCCGCCGTCTTC | 61.446 | 60.000 | 0.00 | 0.00 | 43.38 | 2.87 |
2561 | 7954 | 2.413765 | CTAGAGCCGCCGTCTTCC | 59.586 | 66.667 | 0.00 | 0.00 | 0.00 | 3.46 |
2562 | 7955 | 2.361992 | TAGAGCCGCCGTCTTCCA | 60.362 | 61.111 | 0.00 | 0.00 | 0.00 | 3.53 |
2563 | 7956 | 2.615262 | CTAGAGCCGCCGTCTTCCAC | 62.615 | 65.000 | 0.00 | 0.00 | 0.00 | 4.02 |
2571 | 7964 | 3.633116 | CGTCTTCCACCCCCGGTT | 61.633 | 66.667 | 0.00 | 0.00 | 31.02 | 4.44 |
2572 | 7965 | 2.350134 | GTCTTCCACCCCCGGTTC | 59.650 | 66.667 | 0.00 | 0.00 | 31.02 | 3.62 |
2573 | 7966 | 3.315949 | TCTTCCACCCCCGGTTCG | 61.316 | 66.667 | 0.00 | 0.00 | 31.02 | 3.95 |
2574 | 7967 | 3.315949 | CTTCCACCCCCGGTTCGA | 61.316 | 66.667 | 0.00 | 0.00 | 31.02 | 3.71 |
2575 | 7968 | 2.608368 | TTCCACCCCCGGTTCGAT | 60.608 | 61.111 | 0.00 | 0.00 | 31.02 | 3.59 |
2576 | 7969 | 2.588856 | CTTCCACCCCCGGTTCGATC | 62.589 | 65.000 | 0.00 | 0.00 | 31.02 | 3.69 |
2577 | 7970 | 4.171103 | CCACCCCCGGTTCGATCC | 62.171 | 72.222 | 0.00 | 2.15 | 31.02 | 3.36 |
2578 | 7971 | 4.171103 | CACCCCCGGTTCGATCCC | 62.171 | 72.222 | 6.94 | 0.00 | 31.02 | 3.85 |
2584 | 7977 | 2.414594 | CGGTTCGATCCCGGGTAC | 59.585 | 66.667 | 22.86 | 14.72 | 41.78 | 3.34 |
2585 | 7978 | 2.123428 | CGGTTCGATCCCGGGTACT | 61.123 | 63.158 | 22.86 | 6.52 | 41.78 | 2.73 |
2586 | 7979 | 0.819259 | CGGTTCGATCCCGGGTACTA | 60.819 | 60.000 | 22.86 | 0.00 | 41.78 | 1.82 |
2587 | 7980 | 0.670706 | GGTTCGATCCCGGGTACTAC | 59.329 | 60.000 | 22.86 | 13.09 | 36.24 | 2.73 |
2588 | 7981 | 0.670706 | GTTCGATCCCGGGTACTACC | 59.329 | 60.000 | 22.86 | 2.01 | 37.60 | 3.18 |
2605 | 7998 | 8.545229 | GGTACTACCCTTTTTCTCTACTTTTC | 57.455 | 38.462 | 0.00 | 0.00 | 30.04 | 2.29 |
2606 | 7999 | 7.605691 | GGTACTACCCTTTTTCTCTACTTTTCC | 59.394 | 40.741 | 0.00 | 0.00 | 30.04 | 3.13 |
2607 | 8000 | 6.540995 | ACTACCCTTTTTCTCTACTTTTCCC | 58.459 | 40.000 | 0.00 | 0.00 | 0.00 | 3.97 |
2608 | 8001 | 5.664815 | ACCCTTTTTCTCTACTTTTCCCT | 57.335 | 39.130 | 0.00 | 0.00 | 0.00 | 4.20 |
2609 | 8002 | 5.632118 | ACCCTTTTTCTCTACTTTTCCCTC | 58.368 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
2610 | 8003 | 5.372959 | ACCCTTTTTCTCTACTTTTCCCTCT | 59.627 | 40.000 | 0.00 | 0.00 | 0.00 | 3.69 |
2611 | 8004 | 6.126156 | ACCCTTTTTCTCTACTTTTCCCTCTT | 60.126 | 38.462 | 0.00 | 0.00 | 0.00 | 2.85 |
2612 | 8005 | 7.073343 | ACCCTTTTTCTCTACTTTTCCCTCTTA | 59.927 | 37.037 | 0.00 | 0.00 | 0.00 | 2.10 |
2613 | 8006 | 7.942894 | CCCTTTTTCTCTACTTTTCCCTCTTAA | 59.057 | 37.037 | 0.00 | 0.00 | 0.00 | 1.85 |
2614 | 8007 | 8.784994 | CCTTTTTCTCTACTTTTCCCTCTTAAC | 58.215 | 37.037 | 0.00 | 0.00 | 0.00 | 2.01 |
2615 | 8008 | 9.338622 | CTTTTTCTCTACTTTTCCCTCTTAACA | 57.661 | 33.333 | 0.00 | 0.00 | 0.00 | 2.41 |
2616 | 8009 | 8.904099 | TTTTCTCTACTTTTCCCTCTTAACAG | 57.096 | 34.615 | 0.00 | 0.00 | 0.00 | 3.16 |
2617 | 8010 | 6.038997 | TCTCTACTTTTCCCTCTTAACAGC | 57.961 | 41.667 | 0.00 | 0.00 | 0.00 | 4.40 |
2618 | 8011 | 4.817517 | TCTACTTTTCCCTCTTAACAGCG | 58.182 | 43.478 | 0.00 | 0.00 | 0.00 | 5.18 |
2619 | 8012 | 3.764237 | ACTTTTCCCTCTTAACAGCGA | 57.236 | 42.857 | 0.00 | 0.00 | 0.00 | 4.93 |
2620 | 8013 | 3.665190 | ACTTTTCCCTCTTAACAGCGAG | 58.335 | 45.455 | 0.00 | 0.00 | 0.00 | 5.03 |
2621 | 8014 | 2.094762 | TTTCCCTCTTAACAGCGAGC | 57.905 | 50.000 | 0.00 | 0.00 | 0.00 | 5.03 |
2622 | 8015 | 0.108804 | TTCCCTCTTAACAGCGAGCG | 60.109 | 55.000 | 0.00 | 0.00 | 0.00 | 5.03 |
2623 | 8016 | 0.963856 | TCCCTCTTAACAGCGAGCGA | 60.964 | 55.000 | 0.00 | 0.00 | 0.00 | 4.93 |
2624 | 8017 | 0.526524 | CCCTCTTAACAGCGAGCGAG | 60.527 | 60.000 | 0.00 | 0.00 | 0.00 | 5.03 |
2625 | 8018 | 1.142778 | CCTCTTAACAGCGAGCGAGC | 61.143 | 60.000 | 0.00 | 0.00 | 37.41 | 5.03 |
2626 | 8019 | 1.142778 | CTCTTAACAGCGAGCGAGCC | 61.143 | 60.000 | 2.87 | 0.00 | 38.01 | 4.70 |
2627 | 8020 | 1.153745 | CTTAACAGCGAGCGAGCCT | 60.154 | 57.895 | 2.87 | 0.00 | 38.01 | 4.58 |
2628 | 8021 | 1.142778 | CTTAACAGCGAGCGAGCCTC | 61.143 | 60.000 | 2.87 | 0.00 | 38.01 | 4.70 |
2629 | 8022 | 2.558554 | TTAACAGCGAGCGAGCCTCC | 62.559 | 60.000 | 2.87 | 0.00 | 37.27 | 4.30 |
2631 | 8024 | 4.567385 | CAGCGAGCGAGCCTCCTC | 62.567 | 72.222 | 2.87 | 1.41 | 37.27 | 3.71 |
2634 | 8027 | 4.200283 | CGAGCGAGCCTCCTCCAC | 62.200 | 72.222 | 5.09 | 0.00 | 37.27 | 4.02 |
2635 | 8028 | 3.071206 | GAGCGAGCCTCCTCCACA | 61.071 | 66.667 | 0.00 | 0.00 | 34.49 | 4.17 |
2636 | 8029 | 3.363844 | GAGCGAGCCTCCTCCACAC | 62.364 | 68.421 | 0.00 | 0.00 | 34.49 | 3.82 |
2637 | 8030 | 4.459089 | GCGAGCCTCCTCCACACC | 62.459 | 72.222 | 0.00 | 0.00 | 34.49 | 4.16 |
2638 | 8031 | 4.135153 | CGAGCCTCCTCCACACCG | 62.135 | 72.222 | 0.00 | 0.00 | 34.49 | 4.94 |
2639 | 8032 | 4.459089 | GAGCCTCCTCCACACCGC | 62.459 | 72.222 | 0.00 | 0.00 | 31.68 | 5.68 |
2641 | 8034 | 4.101448 | GCCTCCTCCACACCGCAT | 62.101 | 66.667 | 0.00 | 0.00 | 0.00 | 4.73 |
2642 | 8035 | 2.124983 | CCTCCTCCACACCGCATG | 60.125 | 66.667 | 0.00 | 0.00 | 0.00 | 4.06 |
2643 | 8036 | 2.821366 | CTCCTCCACACCGCATGC | 60.821 | 66.667 | 7.91 | 7.91 | 0.00 | 4.06 |
2644 | 8037 | 4.758251 | TCCTCCACACCGCATGCG | 62.758 | 66.667 | 32.60 | 32.60 | 39.44 | 4.73 |
2646 | 8039 | 3.049674 | CTCCACACCGCATGCGTT | 61.050 | 61.111 | 35.55 | 22.85 | 37.81 | 4.84 |
2647 | 8040 | 3.027170 | CTCCACACCGCATGCGTTC | 62.027 | 63.158 | 35.55 | 0.00 | 37.81 | 3.95 |
2648 | 8041 | 3.353029 | CCACACCGCATGCGTTCA | 61.353 | 61.111 | 35.55 | 0.00 | 37.81 | 3.18 |
2649 | 8042 | 2.689785 | CCACACCGCATGCGTTCAT | 61.690 | 57.895 | 35.55 | 17.27 | 37.81 | 2.57 |
2657 | 8050 | 2.324215 | CATGCGTTCATGGGCTAGG | 58.676 | 57.895 | 0.00 | 0.00 | 44.84 | 3.02 |
2658 | 8051 | 1.526917 | ATGCGTTCATGGGCTAGGC | 60.527 | 57.895 | 8.00 | 8.00 | 0.00 | 3.93 |
2673 | 8066 | 2.679996 | GGCCATGACGCCCCTTTT | 60.680 | 61.111 | 0.00 | 0.00 | 43.66 | 2.27 |
2674 | 8067 | 2.282783 | GGCCATGACGCCCCTTTTT | 61.283 | 57.895 | 0.00 | 0.00 | 43.66 | 1.94 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
3 | 4 | 3.125316 | GGTCAAGAAACAGCAGATAACCG | 59.875 | 47.826 | 0.00 | 0.00 | 0.00 | 4.44 |
45 | 46 | 5.473066 | AAAAATAGCATGCAGTGGAAAGT | 57.527 | 34.783 | 21.98 | 0.00 | 0.00 | 2.66 |
67 | 68 | 8.103305 | AGCCTACTACTTCAATTCTCATGAAAA | 58.897 | 33.333 | 0.00 | 0.00 | 36.43 | 2.29 |
127 | 131 | 9.477484 | AAATATTAGACAGCTAATGAGTTACCG | 57.523 | 33.333 | 8.09 | 0.00 | 44.79 | 4.02 |
225 | 231 | 9.897744 | CAAACAGATTACTTGATGTGTTTACAT | 57.102 | 29.630 | 11.23 | 0.00 | 45.86 | 2.29 |
266 | 300 | 7.798982 | GCAACTCTTAACAAACTTACTGTCATC | 59.201 | 37.037 | 0.00 | 0.00 | 0.00 | 2.92 |
305 | 2805 | 5.299279 | ACATGGTTCTTGTTAACAGTTCAGG | 59.701 | 40.000 | 8.56 | 8.51 | 0.00 | 3.86 |
333 | 2835 | 4.280929 | TGTGCTGCTGTAACTCTCTTTCTA | 59.719 | 41.667 | 0.00 | 0.00 | 0.00 | 2.10 |
394 | 2922 | 2.370349 | TGTTTCCGCTCCTTTCAACAA | 58.630 | 42.857 | 0.00 | 0.00 | 0.00 | 2.83 |
434 | 2962 | 3.509442 | TGGTGGGAGCATTTCTTTTCAT | 58.491 | 40.909 | 0.00 | 0.00 | 0.00 | 2.57 |
437 | 2965 | 2.962859 | ACTGGTGGGAGCATTTCTTTT | 58.037 | 42.857 | 0.00 | 0.00 | 0.00 | 2.27 |
452 | 2989 | 3.066291 | TGCGATAATCCAACAACTGGT | 57.934 | 42.857 | 0.00 | 0.00 | 46.51 | 4.00 |
453 | 2990 | 4.318760 | CGTATGCGATAATCCAACAACTGG | 60.319 | 45.833 | 0.00 | 0.00 | 43.29 | 4.00 |
454 | 2991 | 4.761745 | CGTATGCGATAATCCAACAACTG | 58.238 | 43.478 | 0.00 | 0.00 | 41.33 | 3.16 |
476 | 3019 | 3.384789 | AGTGGTCTTTCTTTTGGGAAAGC | 59.615 | 43.478 | 10.86 | 7.21 | 46.76 | 3.51 |
494 | 3051 | 1.486726 | GTGTTCTCCCTCCCATAGTGG | 59.513 | 57.143 | 0.00 | 0.00 | 37.25 | 4.00 |
495 | 3052 | 1.137086 | CGTGTTCTCCCTCCCATAGTG | 59.863 | 57.143 | 0.00 | 0.00 | 0.00 | 2.74 |
496 | 3053 | 1.006758 | TCGTGTTCTCCCTCCCATAGT | 59.993 | 52.381 | 0.00 | 0.00 | 0.00 | 2.12 |
497 | 3054 | 1.776662 | TCGTGTTCTCCCTCCCATAG | 58.223 | 55.000 | 0.00 | 0.00 | 0.00 | 2.23 |
498 | 3055 | 2.241281 | TTCGTGTTCTCCCTCCCATA | 57.759 | 50.000 | 0.00 | 0.00 | 0.00 | 2.74 |
499 | 3056 | 1.486726 | GATTCGTGTTCTCCCTCCCAT | 59.513 | 52.381 | 0.00 | 0.00 | 0.00 | 4.00 |
500 | 3057 | 0.902531 | GATTCGTGTTCTCCCTCCCA | 59.097 | 55.000 | 0.00 | 0.00 | 0.00 | 4.37 |
501 | 3058 | 1.196012 | AGATTCGTGTTCTCCCTCCC | 58.804 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
502 | 3059 | 2.622436 | CAAGATTCGTGTTCTCCCTCC | 58.378 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
503 | 3060 | 2.622436 | CCAAGATTCGTGTTCTCCCTC | 58.378 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
504 | 3061 | 1.339151 | GCCAAGATTCGTGTTCTCCCT | 60.339 | 52.381 | 0.00 | 0.00 | 0.00 | 4.20 |
505 | 3062 | 1.087501 | GCCAAGATTCGTGTTCTCCC | 58.912 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
506 | 3063 | 1.808411 | TGCCAAGATTCGTGTTCTCC | 58.192 | 50.000 | 0.00 | 0.00 | 0.00 | 3.71 |
507 | 3064 | 3.896648 | TTTGCCAAGATTCGTGTTCTC | 57.103 | 42.857 | 0.00 | 0.00 | 0.00 | 2.87 |
527 | 3095 | 3.077484 | ACTGTAGCCTGACATGCAAAT | 57.923 | 42.857 | 5.48 | 0.00 | 0.00 | 2.32 |
546 | 3114 | 5.916661 | TGAGACAGAGGGAGTACATTAAC | 57.083 | 43.478 | 0.00 | 0.00 | 0.00 | 2.01 |
547 | 3115 | 6.928348 | TTTGAGACAGAGGGAGTACATTAA | 57.072 | 37.500 | 0.00 | 0.00 | 0.00 | 1.40 |
548 | 3116 | 6.928348 | TTTTGAGACAGAGGGAGTACATTA | 57.072 | 37.500 | 0.00 | 0.00 | 0.00 | 1.90 |
654 | 3222 | 6.566197 | TTTCATGAAGAGAAAAAGGAGAGC | 57.434 | 37.500 | 8.41 | 0.00 | 32.47 | 4.09 |
697 | 4128 | 1.097547 | ACCATGCATGCCGCTACTTC | 61.098 | 55.000 | 21.69 | 0.00 | 43.06 | 3.01 |
705 | 4136 | 2.103538 | CTTGCGACCATGCATGCC | 59.896 | 61.111 | 21.69 | 13.42 | 45.78 | 4.40 |
706 | 4137 | 1.063649 | CTCTTGCGACCATGCATGC | 59.936 | 57.895 | 21.69 | 11.82 | 45.78 | 4.06 |
727 | 4389 | 5.514500 | TTATCCCCTCTATTATTGCACCC | 57.486 | 43.478 | 0.00 | 0.00 | 0.00 | 4.61 |
820 | 6047 | 0.036306 | ATGTTTGGAGGACGGGTGTC | 59.964 | 55.000 | 0.00 | 0.00 | 44.72 | 3.67 |
847 | 6082 | 0.388263 | GGCTTCTTGCTTGCTTGCTC | 60.388 | 55.000 | 3.47 | 0.00 | 42.39 | 4.26 |
862 | 6117 | 0.736325 | GATGCGAGTACGTGTGGCTT | 60.736 | 55.000 | 0.00 | 0.00 | 41.98 | 4.35 |
875 | 6130 | 1.114627 | AGCTAGTGTGATGGATGCGA | 58.885 | 50.000 | 0.00 | 0.00 | 0.00 | 5.10 |
876 | 6131 | 1.596260 | CAAGCTAGTGTGATGGATGCG | 59.404 | 52.381 | 0.00 | 0.00 | 0.00 | 4.73 |
906 | 6176 | 1.673168 | CCATTCTAAGAGCAGGTGGC | 58.327 | 55.000 | 0.00 | 0.00 | 45.30 | 5.01 |
971 | 6249 | 0.807667 | GCCATCGAAGCACTCATCGT | 60.808 | 55.000 | 5.96 | 0.00 | 39.91 | 3.73 |
987 | 6265 | 3.071837 | TACATCGTCCTGCCGCCA | 61.072 | 61.111 | 0.00 | 0.00 | 0.00 | 5.69 |
1317 | 6655 | 1.977854 | TGCTGCTTCACCTCCTTCTTA | 59.022 | 47.619 | 0.00 | 0.00 | 0.00 | 2.10 |
1421 | 6775 | 7.985634 | ACTGTGTAAATGTGATGTTGTTTTC | 57.014 | 32.000 | 0.00 | 0.00 | 0.00 | 2.29 |
1795 | 7185 | 9.595357 | GCTTATTGTAGATAAGCCGAAATTAAC | 57.405 | 33.333 | 16.18 | 0.00 | 46.43 | 2.01 |
1841 | 7233 | 2.509336 | GCACGCGACTGGTAGCAT | 60.509 | 61.111 | 15.93 | 0.00 | 0.00 | 3.79 |
1853 | 7245 | 0.600255 | AGTTACACCACAGAGCACGC | 60.600 | 55.000 | 0.00 | 0.00 | 0.00 | 5.34 |
1876 | 7268 | 4.581824 | ACTGTCGACCGTATTGTACCATAT | 59.418 | 41.667 | 14.12 | 0.00 | 0.00 | 1.78 |
1878 | 7270 | 2.756760 | ACTGTCGACCGTATTGTACCAT | 59.243 | 45.455 | 14.12 | 0.00 | 0.00 | 3.55 |
2355 | 7748 | 8.303876 | CCCATAAGCAATAGCCGTTTTATTATT | 58.696 | 33.333 | 0.00 | 0.00 | 43.56 | 1.40 |
2356 | 7749 | 7.093945 | CCCCATAAGCAATAGCCGTTTTATTAT | 60.094 | 37.037 | 0.00 | 0.00 | 43.56 | 1.28 |
2357 | 7750 | 6.207810 | CCCCATAAGCAATAGCCGTTTTATTA | 59.792 | 38.462 | 0.00 | 0.00 | 43.56 | 0.98 |
2358 | 7751 | 5.010617 | CCCCATAAGCAATAGCCGTTTTATT | 59.989 | 40.000 | 0.00 | 0.00 | 43.56 | 1.40 |
2359 | 7752 | 4.522789 | CCCCATAAGCAATAGCCGTTTTAT | 59.477 | 41.667 | 0.00 | 0.00 | 43.56 | 1.40 |
2360 | 7753 | 3.886505 | CCCCATAAGCAATAGCCGTTTTA | 59.113 | 43.478 | 0.00 | 0.00 | 43.56 | 1.52 |
2361 | 7754 | 2.693074 | CCCCATAAGCAATAGCCGTTTT | 59.307 | 45.455 | 0.00 | 0.00 | 43.56 | 2.43 |
2362 | 7755 | 2.306847 | CCCCATAAGCAATAGCCGTTT | 58.693 | 47.619 | 0.00 | 0.00 | 43.56 | 3.60 |
2363 | 7756 | 1.214424 | ACCCCATAAGCAATAGCCGTT | 59.786 | 47.619 | 0.00 | 0.00 | 43.56 | 4.44 |
2364 | 7757 | 0.843984 | ACCCCATAAGCAATAGCCGT | 59.156 | 50.000 | 0.00 | 0.00 | 43.56 | 5.68 |
2365 | 7758 | 2.423577 | GTACCCCATAAGCAATAGCCG | 58.576 | 52.381 | 0.00 | 0.00 | 43.56 | 5.52 |
2366 | 7759 | 2.224450 | ACGTACCCCATAAGCAATAGCC | 60.224 | 50.000 | 0.00 | 0.00 | 43.56 | 3.93 |
2367 | 7760 | 3.064931 | GACGTACCCCATAAGCAATAGC | 58.935 | 50.000 | 0.00 | 0.00 | 42.56 | 2.97 |
2368 | 7761 | 4.056050 | GTGACGTACCCCATAAGCAATAG | 58.944 | 47.826 | 0.00 | 0.00 | 0.00 | 1.73 |
2369 | 7762 | 3.491276 | CGTGACGTACCCCATAAGCAATA | 60.491 | 47.826 | 0.00 | 0.00 | 0.00 | 1.90 |
2370 | 7763 | 2.740580 | CGTGACGTACCCCATAAGCAAT | 60.741 | 50.000 | 0.00 | 0.00 | 0.00 | 3.56 |
2371 | 7764 | 1.404449 | CGTGACGTACCCCATAAGCAA | 60.404 | 52.381 | 0.00 | 0.00 | 0.00 | 3.91 |
2372 | 7765 | 0.173935 | CGTGACGTACCCCATAAGCA | 59.826 | 55.000 | 0.00 | 0.00 | 0.00 | 3.91 |
2373 | 7766 | 0.457035 | TCGTGACGTACCCCATAAGC | 59.543 | 55.000 | 4.40 | 0.00 | 0.00 | 3.09 |
2374 | 7767 | 2.945447 | TTCGTGACGTACCCCATAAG | 57.055 | 50.000 | 4.40 | 0.00 | 0.00 | 1.73 |
2375 | 7768 | 3.674528 | TTTTCGTGACGTACCCCATAA | 57.325 | 42.857 | 4.40 | 0.00 | 0.00 | 1.90 |
2376 | 7769 | 3.891422 | ATTTTCGTGACGTACCCCATA | 57.109 | 42.857 | 4.40 | 0.00 | 0.00 | 2.74 |
2377 | 7770 | 2.745281 | CAATTTTCGTGACGTACCCCAT | 59.255 | 45.455 | 4.40 | 0.00 | 0.00 | 4.00 |
2378 | 7771 | 2.144730 | CAATTTTCGTGACGTACCCCA | 58.855 | 47.619 | 4.40 | 0.00 | 0.00 | 4.96 |
2379 | 7772 | 1.135888 | GCAATTTTCGTGACGTACCCC | 60.136 | 52.381 | 4.40 | 0.00 | 0.00 | 4.95 |
2380 | 7773 | 1.135888 | GGCAATTTTCGTGACGTACCC | 60.136 | 52.381 | 4.40 | 0.00 | 0.00 | 3.69 |
2381 | 7774 | 1.135888 | GGGCAATTTTCGTGACGTACC | 60.136 | 52.381 | 4.40 | 0.00 | 0.00 | 3.34 |
2382 | 7775 | 1.135888 | GGGGCAATTTTCGTGACGTAC | 60.136 | 52.381 | 4.40 | 0.00 | 0.00 | 3.67 |
2383 | 7776 | 1.158434 | GGGGCAATTTTCGTGACGTA | 58.842 | 50.000 | 4.40 | 0.00 | 0.00 | 3.57 |
2384 | 7777 | 1.520600 | GGGGGCAATTTTCGTGACGT | 61.521 | 55.000 | 4.40 | 0.00 | 0.00 | 4.34 |
2385 | 7778 | 1.211709 | GGGGGCAATTTTCGTGACG | 59.788 | 57.895 | 0.00 | 0.00 | 0.00 | 4.35 |
2386 | 7779 | 1.211709 | CGGGGGCAATTTTCGTGAC | 59.788 | 57.895 | 0.00 | 0.00 | 0.00 | 3.67 |
2387 | 7780 | 0.537600 | TTCGGGGGCAATTTTCGTGA | 60.538 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
2388 | 7781 | 0.109319 | CTTCGGGGGCAATTTTCGTG | 60.109 | 55.000 | 0.00 | 0.00 | 0.00 | 4.35 |
2389 | 7782 | 0.538746 | ACTTCGGGGGCAATTTTCGT | 60.539 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2390 | 7783 | 0.601057 | AACTTCGGGGGCAATTTTCG | 59.399 | 50.000 | 0.00 | 0.00 | 0.00 | 3.46 |
2391 | 7784 | 1.343142 | ACAACTTCGGGGGCAATTTTC | 59.657 | 47.619 | 0.00 | 0.00 | 0.00 | 2.29 |
2392 | 7785 | 1.343142 | GACAACTTCGGGGGCAATTTT | 59.657 | 47.619 | 0.00 | 0.00 | 0.00 | 1.82 |
2393 | 7786 | 0.966179 | GACAACTTCGGGGGCAATTT | 59.034 | 50.000 | 0.00 | 0.00 | 0.00 | 1.82 |
2394 | 7787 | 0.178975 | TGACAACTTCGGGGGCAATT | 60.179 | 50.000 | 0.00 | 0.00 | 0.00 | 2.32 |
2395 | 7788 | 0.039618 | ATGACAACTTCGGGGGCAAT | 59.960 | 50.000 | 0.00 | 0.00 | 0.00 | 3.56 |
2396 | 7789 | 0.693622 | TATGACAACTTCGGGGGCAA | 59.306 | 50.000 | 0.00 | 0.00 | 0.00 | 4.52 |
2397 | 7790 | 0.693622 | TTATGACAACTTCGGGGGCA | 59.306 | 50.000 | 0.00 | 0.00 | 0.00 | 5.36 |
2398 | 7791 | 1.828979 | TTTATGACAACTTCGGGGGC | 58.171 | 50.000 | 0.00 | 0.00 | 0.00 | 5.80 |
2399 | 7792 | 4.337274 | GGTAATTTATGACAACTTCGGGGG | 59.663 | 45.833 | 0.00 | 0.00 | 0.00 | 5.40 |
2400 | 7793 | 4.337274 | GGGTAATTTATGACAACTTCGGGG | 59.663 | 45.833 | 0.00 | 0.00 | 0.00 | 5.73 |
2401 | 7794 | 4.944930 | TGGGTAATTTATGACAACTTCGGG | 59.055 | 41.667 | 0.00 | 0.00 | 0.00 | 5.14 |
2402 | 7795 | 5.413213 | TGTGGGTAATTTATGACAACTTCGG | 59.587 | 40.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2403 | 7796 | 6.489127 | TGTGGGTAATTTATGACAACTTCG | 57.511 | 37.500 | 0.00 | 0.00 | 0.00 | 3.79 |
2404 | 7797 | 7.973944 | GGATTGTGGGTAATTTATGACAACTTC | 59.026 | 37.037 | 0.00 | 0.00 | 0.00 | 3.01 |
2405 | 7798 | 7.673926 | AGGATTGTGGGTAATTTATGACAACTT | 59.326 | 33.333 | 0.00 | 0.00 | 0.00 | 2.66 |
2406 | 7799 | 7.182060 | AGGATTGTGGGTAATTTATGACAACT | 58.818 | 34.615 | 0.00 | 0.00 | 0.00 | 3.16 |
2407 | 7800 | 7.404671 | AGGATTGTGGGTAATTTATGACAAC | 57.595 | 36.000 | 0.00 | 0.00 | 0.00 | 3.32 |
2408 | 7801 | 9.349713 | GATAGGATTGTGGGTAATTTATGACAA | 57.650 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
2409 | 7802 | 8.498575 | TGATAGGATTGTGGGTAATTTATGACA | 58.501 | 33.333 | 0.00 | 0.00 | 0.00 | 3.58 |
2410 | 7803 | 8.918202 | TGATAGGATTGTGGGTAATTTATGAC | 57.082 | 34.615 | 0.00 | 0.00 | 0.00 | 3.06 |
2415 | 7808 | 9.936329 | ACTTATTGATAGGATTGTGGGTAATTT | 57.064 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
2416 | 7809 | 9.354673 | CACTTATTGATAGGATTGTGGGTAATT | 57.645 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
2417 | 7810 | 8.723365 | TCACTTATTGATAGGATTGTGGGTAAT | 58.277 | 33.333 | 0.00 | 0.00 | 0.00 | 1.89 |
2418 | 7811 | 8.096621 | TCACTTATTGATAGGATTGTGGGTAA | 57.903 | 34.615 | 0.00 | 0.00 | 0.00 | 2.85 |
2419 | 7812 | 7.684317 | TCACTTATTGATAGGATTGTGGGTA | 57.316 | 36.000 | 0.00 | 0.00 | 0.00 | 3.69 |
2420 | 7813 | 6.575244 | TCACTTATTGATAGGATTGTGGGT | 57.425 | 37.500 | 0.00 | 0.00 | 0.00 | 4.51 |
2421 | 7814 | 6.488006 | CCTTCACTTATTGATAGGATTGTGGG | 59.512 | 42.308 | 0.00 | 0.00 | 35.84 | 4.61 |
2422 | 7815 | 7.282585 | TCCTTCACTTATTGATAGGATTGTGG | 58.717 | 38.462 | 0.00 | 0.00 | 36.97 | 4.17 |
2423 | 7816 | 8.737168 | TTCCTTCACTTATTGATAGGATTGTG | 57.263 | 34.615 | 0.00 | 0.00 | 39.38 | 3.33 |
2424 | 7817 | 9.178758 | GTTTCCTTCACTTATTGATAGGATTGT | 57.821 | 33.333 | 0.00 | 0.00 | 39.38 | 2.71 |
2425 | 7818 | 9.401058 | AGTTTCCTTCACTTATTGATAGGATTG | 57.599 | 33.333 | 0.00 | 0.00 | 39.38 | 2.67 |
2461 | 7854 | 4.436317 | CCTGACGACGACAACTTTGAAAAA | 60.436 | 41.667 | 0.00 | 0.00 | 0.00 | 1.94 |
2462 | 7855 | 3.062909 | CCTGACGACGACAACTTTGAAAA | 59.937 | 43.478 | 0.00 | 0.00 | 0.00 | 2.29 |
2463 | 7856 | 2.605818 | CCTGACGACGACAACTTTGAAA | 59.394 | 45.455 | 0.00 | 0.00 | 0.00 | 2.69 |
2464 | 7857 | 2.198406 | CCTGACGACGACAACTTTGAA | 58.802 | 47.619 | 0.00 | 0.00 | 0.00 | 2.69 |
2465 | 7858 | 1.135527 | ACCTGACGACGACAACTTTGA | 59.864 | 47.619 | 0.00 | 0.00 | 0.00 | 2.69 |
2466 | 7859 | 1.567504 | ACCTGACGACGACAACTTTG | 58.432 | 50.000 | 0.00 | 0.00 | 0.00 | 2.77 |
2467 | 7860 | 2.199236 | GAACCTGACGACGACAACTTT | 58.801 | 47.619 | 0.00 | 0.00 | 0.00 | 2.66 |
2468 | 7861 | 1.849097 | GAACCTGACGACGACAACTT | 58.151 | 50.000 | 0.00 | 0.00 | 0.00 | 2.66 |
2469 | 7862 | 0.317603 | CGAACCTGACGACGACAACT | 60.318 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2470 | 7863 | 1.273455 | CCGAACCTGACGACGACAAC | 61.273 | 60.000 | 0.00 | 0.00 | 0.00 | 3.32 |
2471 | 7864 | 1.008194 | CCGAACCTGACGACGACAA | 60.008 | 57.895 | 0.00 | 0.00 | 0.00 | 3.18 |
2472 | 7865 | 2.640989 | CCGAACCTGACGACGACA | 59.359 | 61.111 | 0.00 | 0.00 | 0.00 | 4.35 |
2473 | 7866 | 2.804090 | GCCGAACCTGACGACGAC | 60.804 | 66.667 | 0.00 | 0.00 | 0.00 | 4.34 |
2474 | 7867 | 2.974489 | GAGCCGAACCTGACGACGA | 61.974 | 63.158 | 0.00 | 0.00 | 0.00 | 4.20 |
2475 | 7868 | 2.473664 | AAGAGCCGAACCTGACGACG | 62.474 | 60.000 | 0.00 | 0.00 | 0.00 | 5.12 |
2476 | 7869 | 0.524862 | TAAGAGCCGAACCTGACGAC | 59.475 | 55.000 | 0.00 | 0.00 | 0.00 | 4.34 |
2477 | 7870 | 1.471119 | ATAAGAGCCGAACCTGACGA | 58.529 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
2478 | 7871 | 2.728922 | GTATAAGAGCCGAACCTGACG | 58.271 | 52.381 | 0.00 | 0.00 | 0.00 | 4.35 |
2479 | 7872 | 2.357009 | TCGTATAAGAGCCGAACCTGAC | 59.643 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
2480 | 7873 | 2.646930 | TCGTATAAGAGCCGAACCTGA | 58.353 | 47.619 | 0.00 | 0.00 | 0.00 | 3.86 |
2481 | 7874 | 3.004419 | TCATCGTATAAGAGCCGAACCTG | 59.996 | 47.826 | 0.00 | 0.00 | 33.89 | 4.00 |
2482 | 7875 | 3.220110 | TCATCGTATAAGAGCCGAACCT | 58.780 | 45.455 | 0.00 | 0.00 | 33.89 | 3.50 |
2483 | 7876 | 3.637998 | TCATCGTATAAGAGCCGAACC | 57.362 | 47.619 | 0.00 | 0.00 | 33.89 | 3.62 |
2484 | 7877 | 5.094134 | GGTATCATCGTATAAGAGCCGAAC | 58.906 | 45.833 | 0.00 | 0.00 | 33.89 | 3.95 |
2485 | 7878 | 4.157289 | GGGTATCATCGTATAAGAGCCGAA | 59.843 | 45.833 | 0.00 | 0.00 | 33.89 | 4.30 |
2486 | 7879 | 3.693085 | GGGTATCATCGTATAAGAGCCGA | 59.307 | 47.826 | 0.00 | 0.00 | 34.79 | 5.54 |
2487 | 7880 | 3.695060 | AGGGTATCATCGTATAAGAGCCG | 59.305 | 47.826 | 0.00 | 0.00 | 0.00 | 5.52 |
2488 | 7881 | 5.662674 | AAGGGTATCATCGTATAAGAGCC | 57.337 | 43.478 | 0.00 | 0.00 | 0.00 | 4.70 |
2489 | 7882 | 7.154435 | TGTAAGGGTATCATCGTATAAGAGC | 57.846 | 40.000 | 0.00 | 0.00 | 0.00 | 4.09 |
2497 | 7890 | 9.475620 | TTCTGATATATGTAAGGGTATCATCGT | 57.524 | 33.333 | 0.00 | 0.00 | 34.22 | 3.73 |
2498 | 7891 | 9.958234 | CTTCTGATATATGTAAGGGTATCATCG | 57.042 | 37.037 | 0.00 | 0.00 | 34.22 | 3.84 |
2507 | 7900 | 6.114187 | TGTGCCCTTCTGATATATGTAAGG | 57.886 | 41.667 | 9.13 | 9.13 | 37.13 | 2.69 |
2508 | 7901 | 6.169094 | CCTGTGCCCTTCTGATATATGTAAG | 58.831 | 44.000 | 0.00 | 0.00 | 0.00 | 2.34 |
2509 | 7902 | 5.606749 | ACCTGTGCCCTTCTGATATATGTAA | 59.393 | 40.000 | 0.00 | 0.00 | 0.00 | 2.41 |
2510 | 7903 | 5.155161 | ACCTGTGCCCTTCTGATATATGTA | 58.845 | 41.667 | 0.00 | 0.00 | 0.00 | 2.29 |
2511 | 7904 | 3.976654 | ACCTGTGCCCTTCTGATATATGT | 59.023 | 43.478 | 0.00 | 0.00 | 0.00 | 2.29 |
2512 | 7905 | 4.630644 | ACCTGTGCCCTTCTGATATATG | 57.369 | 45.455 | 0.00 | 0.00 | 0.00 | 1.78 |
2513 | 7906 | 4.532521 | GGTACCTGTGCCCTTCTGATATAT | 59.467 | 45.833 | 4.06 | 0.00 | 0.00 | 0.86 |
2514 | 7907 | 3.901844 | GGTACCTGTGCCCTTCTGATATA | 59.098 | 47.826 | 4.06 | 0.00 | 0.00 | 0.86 |
2515 | 7908 | 2.706190 | GGTACCTGTGCCCTTCTGATAT | 59.294 | 50.000 | 4.06 | 0.00 | 0.00 | 1.63 |
2516 | 7909 | 2.116238 | GGTACCTGTGCCCTTCTGATA | 58.884 | 52.381 | 4.06 | 0.00 | 0.00 | 2.15 |
2517 | 7910 | 0.912486 | GGTACCTGTGCCCTTCTGAT | 59.088 | 55.000 | 4.06 | 0.00 | 0.00 | 2.90 |
2518 | 7911 | 0.472925 | TGGTACCTGTGCCCTTCTGA | 60.473 | 55.000 | 14.36 | 0.00 | 34.17 | 3.27 |
2519 | 7912 | 0.321653 | GTGGTACCTGTGCCCTTCTG | 60.322 | 60.000 | 14.36 | 0.00 | 34.17 | 3.02 |
2520 | 7913 | 0.766674 | TGTGGTACCTGTGCCCTTCT | 60.767 | 55.000 | 14.36 | 0.00 | 34.17 | 2.85 |
2521 | 7914 | 0.109723 | TTGTGGTACCTGTGCCCTTC | 59.890 | 55.000 | 14.36 | 0.00 | 34.17 | 3.46 |
2522 | 7915 | 0.777446 | ATTGTGGTACCTGTGCCCTT | 59.223 | 50.000 | 14.36 | 0.00 | 34.17 | 3.95 |
2523 | 7916 | 1.559682 | CTATTGTGGTACCTGTGCCCT | 59.440 | 52.381 | 14.36 | 0.00 | 34.17 | 5.19 |
2524 | 7917 | 2.017113 | GCTATTGTGGTACCTGTGCCC | 61.017 | 57.143 | 14.36 | 0.00 | 34.17 | 5.36 |
2525 | 7918 | 1.065418 | AGCTATTGTGGTACCTGTGCC | 60.065 | 52.381 | 14.36 | 0.00 | 35.78 | 5.01 |
2526 | 7919 | 2.403252 | AGCTATTGTGGTACCTGTGC | 57.597 | 50.000 | 14.36 | 8.82 | 0.00 | 4.57 |
2527 | 7920 | 4.737946 | GCTCTAGCTATTGTGGTACCTGTG | 60.738 | 50.000 | 14.36 | 0.00 | 38.21 | 3.66 |
2528 | 7921 | 3.385111 | GCTCTAGCTATTGTGGTACCTGT | 59.615 | 47.826 | 14.36 | 0.00 | 38.21 | 4.00 |
2529 | 7922 | 3.243907 | GGCTCTAGCTATTGTGGTACCTG | 60.244 | 52.174 | 14.36 | 0.00 | 41.70 | 4.00 |
2530 | 7923 | 2.966516 | GGCTCTAGCTATTGTGGTACCT | 59.033 | 50.000 | 14.36 | 0.00 | 41.70 | 3.08 |
2531 | 7924 | 2.288273 | CGGCTCTAGCTATTGTGGTACC | 60.288 | 54.545 | 4.43 | 4.43 | 41.70 | 3.34 |
2532 | 7925 | 2.862921 | GCGGCTCTAGCTATTGTGGTAC | 60.863 | 54.545 | 1.39 | 0.00 | 41.70 | 3.34 |
2533 | 7926 | 1.340248 | GCGGCTCTAGCTATTGTGGTA | 59.660 | 52.381 | 1.39 | 0.00 | 41.70 | 3.25 |
2534 | 7927 | 0.105039 | GCGGCTCTAGCTATTGTGGT | 59.895 | 55.000 | 1.39 | 0.00 | 41.70 | 4.16 |
2535 | 7928 | 0.601311 | GGCGGCTCTAGCTATTGTGG | 60.601 | 60.000 | 0.00 | 0.00 | 41.70 | 4.17 |
2536 | 7929 | 0.941463 | CGGCGGCTCTAGCTATTGTG | 60.941 | 60.000 | 7.61 | 0.00 | 41.70 | 3.33 |
2537 | 7930 | 1.364171 | CGGCGGCTCTAGCTATTGT | 59.636 | 57.895 | 7.61 | 0.00 | 41.70 | 2.71 |
2538 | 7931 | 0.664767 | GACGGCGGCTCTAGCTATTG | 60.665 | 60.000 | 13.24 | 0.00 | 41.70 | 1.90 |
2539 | 7932 | 0.824182 | AGACGGCGGCTCTAGCTATT | 60.824 | 55.000 | 10.88 | 0.00 | 41.70 | 1.73 |
2540 | 7933 | 0.824182 | AAGACGGCGGCTCTAGCTAT | 60.824 | 55.000 | 19.24 | 0.00 | 41.70 | 2.97 |
2541 | 7934 | 1.445716 | GAAGACGGCGGCTCTAGCTA | 61.446 | 60.000 | 19.24 | 0.00 | 41.70 | 3.32 |
2542 | 7935 | 2.756283 | AAGACGGCGGCTCTAGCT | 60.756 | 61.111 | 19.24 | 0.00 | 41.70 | 3.32 |
2543 | 7936 | 2.278923 | GAAGACGGCGGCTCTAGC | 60.279 | 66.667 | 19.24 | 1.78 | 41.14 | 3.42 |
2544 | 7937 | 2.413765 | GGAAGACGGCGGCTCTAG | 59.586 | 66.667 | 19.24 | 0.00 | 0.00 | 2.43 |
2545 | 7938 | 2.361992 | TGGAAGACGGCGGCTCTA | 60.362 | 61.111 | 19.24 | 4.73 | 0.00 | 2.43 |
2546 | 7939 | 4.070552 | GTGGAAGACGGCGGCTCT | 62.071 | 66.667 | 19.24 | 6.40 | 0.00 | 4.09 |
2554 | 7947 | 3.600898 | GAACCGGGGGTGGAAGACG | 62.601 | 68.421 | 6.32 | 0.00 | 35.34 | 4.18 |
2555 | 7948 | 2.350134 | GAACCGGGGGTGGAAGAC | 59.650 | 66.667 | 6.32 | 0.00 | 35.34 | 3.01 |
2556 | 7949 | 3.315949 | CGAACCGGGGGTGGAAGA | 61.316 | 66.667 | 6.32 | 0.00 | 35.34 | 2.87 |
2557 | 7950 | 2.588856 | GATCGAACCGGGGGTGGAAG | 62.589 | 65.000 | 6.32 | 0.00 | 35.34 | 3.46 |
2558 | 7951 | 2.608368 | ATCGAACCGGGGGTGGAA | 60.608 | 61.111 | 6.32 | 0.00 | 35.34 | 3.53 |
2559 | 7952 | 3.078836 | GATCGAACCGGGGGTGGA | 61.079 | 66.667 | 6.32 | 0.00 | 35.34 | 4.02 |
2560 | 7953 | 4.171103 | GGATCGAACCGGGGGTGG | 62.171 | 72.222 | 6.32 | 0.00 | 35.34 | 4.61 |
2561 | 7954 | 4.171103 | GGGATCGAACCGGGGGTG | 62.171 | 72.222 | 6.32 | 0.00 | 35.34 | 4.61 |
2568 | 7961 | 0.670706 | GTAGTACCCGGGATCGAACC | 59.329 | 60.000 | 32.02 | 2.47 | 39.00 | 3.62 |
2569 | 7962 | 0.670706 | GGTAGTACCCGGGATCGAAC | 59.329 | 60.000 | 32.02 | 20.11 | 39.00 | 3.95 |
2570 | 7963 | 3.116091 | GGTAGTACCCGGGATCGAA | 57.884 | 57.895 | 32.02 | 10.28 | 39.00 | 3.71 |
2571 | 7964 | 4.907457 | GGTAGTACCCGGGATCGA | 57.093 | 61.111 | 32.02 | 12.96 | 39.00 | 3.59 |
2580 | 7973 | 7.605691 | GGAAAAGTAGAGAAAAAGGGTAGTACC | 59.394 | 40.741 | 11.20 | 11.20 | 37.60 | 3.34 |
2581 | 7974 | 7.605691 | GGGAAAAGTAGAGAAAAAGGGTAGTAC | 59.394 | 40.741 | 0.00 | 0.00 | 0.00 | 2.73 |
2582 | 7975 | 7.515166 | AGGGAAAAGTAGAGAAAAAGGGTAGTA | 59.485 | 37.037 | 0.00 | 0.00 | 0.00 | 1.82 |
2583 | 7976 | 6.332103 | AGGGAAAAGTAGAGAAAAAGGGTAGT | 59.668 | 38.462 | 0.00 | 0.00 | 0.00 | 2.73 |
2584 | 7977 | 6.780901 | AGGGAAAAGTAGAGAAAAAGGGTAG | 58.219 | 40.000 | 0.00 | 0.00 | 0.00 | 3.18 |
2585 | 7978 | 6.561454 | AGAGGGAAAAGTAGAGAAAAAGGGTA | 59.439 | 38.462 | 0.00 | 0.00 | 0.00 | 3.69 |
2586 | 7979 | 5.372959 | AGAGGGAAAAGTAGAGAAAAAGGGT | 59.627 | 40.000 | 0.00 | 0.00 | 0.00 | 4.34 |
2587 | 7980 | 5.882040 | AGAGGGAAAAGTAGAGAAAAAGGG | 58.118 | 41.667 | 0.00 | 0.00 | 0.00 | 3.95 |
2588 | 7981 | 8.784994 | GTTAAGAGGGAAAAGTAGAGAAAAAGG | 58.215 | 37.037 | 0.00 | 0.00 | 0.00 | 3.11 |
2589 | 7982 | 9.338622 | TGTTAAGAGGGAAAAGTAGAGAAAAAG | 57.661 | 33.333 | 0.00 | 0.00 | 0.00 | 2.27 |
2590 | 7983 | 9.338622 | CTGTTAAGAGGGAAAAGTAGAGAAAAA | 57.661 | 33.333 | 0.00 | 0.00 | 0.00 | 1.94 |
2591 | 7984 | 7.444487 | GCTGTTAAGAGGGAAAAGTAGAGAAAA | 59.556 | 37.037 | 1.31 | 0.00 | 0.00 | 2.29 |
2592 | 7985 | 6.935208 | GCTGTTAAGAGGGAAAAGTAGAGAAA | 59.065 | 38.462 | 1.31 | 0.00 | 0.00 | 2.52 |
2593 | 7986 | 6.465084 | GCTGTTAAGAGGGAAAAGTAGAGAA | 58.535 | 40.000 | 1.31 | 0.00 | 0.00 | 2.87 |
2594 | 7987 | 5.336531 | CGCTGTTAAGAGGGAAAAGTAGAGA | 60.337 | 44.000 | 10.82 | 0.00 | 0.00 | 3.10 |
2595 | 7988 | 4.865365 | CGCTGTTAAGAGGGAAAAGTAGAG | 59.135 | 45.833 | 10.82 | 0.00 | 0.00 | 2.43 |
2596 | 7989 | 4.525487 | TCGCTGTTAAGAGGGAAAAGTAGA | 59.475 | 41.667 | 15.83 | 0.00 | 32.35 | 2.59 |
2597 | 7990 | 4.817517 | TCGCTGTTAAGAGGGAAAAGTAG | 58.182 | 43.478 | 15.83 | 0.00 | 32.35 | 2.57 |
2598 | 7991 | 4.817517 | CTCGCTGTTAAGAGGGAAAAGTA | 58.182 | 43.478 | 18.20 | 0.00 | 34.76 | 2.24 |
2599 | 7992 | 3.665190 | CTCGCTGTTAAGAGGGAAAAGT | 58.335 | 45.455 | 18.20 | 0.00 | 34.76 | 2.66 |
2600 | 7993 | 2.416893 | GCTCGCTGTTAAGAGGGAAAAG | 59.583 | 50.000 | 18.20 | 9.62 | 34.76 | 2.27 |
2601 | 7994 | 2.423577 | GCTCGCTGTTAAGAGGGAAAA | 58.576 | 47.619 | 18.20 | 0.00 | 34.76 | 2.29 |
2602 | 7995 | 1.671850 | CGCTCGCTGTTAAGAGGGAAA | 60.672 | 52.381 | 18.20 | 0.25 | 46.32 | 3.13 |
2603 | 7996 | 0.108804 | CGCTCGCTGTTAAGAGGGAA | 60.109 | 55.000 | 18.20 | 5.15 | 46.32 | 3.97 |
2604 | 7997 | 1.511305 | CGCTCGCTGTTAAGAGGGA | 59.489 | 57.895 | 16.95 | 16.95 | 46.32 | 4.20 |
2605 | 7998 | 0.526524 | CTCGCTCGCTGTTAAGAGGG | 60.527 | 60.000 | 10.12 | 10.12 | 45.25 | 4.30 |
2606 | 7999 | 1.142778 | GCTCGCTCGCTGTTAAGAGG | 61.143 | 60.000 | 1.31 | 0.00 | 35.19 | 3.69 |
2607 | 8000 | 1.142778 | GGCTCGCTCGCTGTTAAGAG | 61.143 | 60.000 | 0.00 | 0.00 | 37.54 | 2.85 |
2608 | 8001 | 1.153823 | GGCTCGCTCGCTGTTAAGA | 60.154 | 57.895 | 0.00 | 0.00 | 0.00 | 2.10 |
2609 | 8002 | 1.142778 | GAGGCTCGCTCGCTGTTAAG | 61.143 | 60.000 | 0.00 | 0.00 | 0.00 | 1.85 |
2610 | 8003 | 1.153823 | GAGGCTCGCTCGCTGTTAA | 60.154 | 57.895 | 0.00 | 0.00 | 0.00 | 2.01 |
2611 | 8004 | 2.490217 | GAGGCTCGCTCGCTGTTA | 59.510 | 61.111 | 0.00 | 0.00 | 0.00 | 2.41 |
2612 | 8005 | 4.443266 | GGAGGCTCGCTCGCTGTT | 62.443 | 66.667 | 8.69 | 0.00 | 0.00 | 3.16 |
2614 | 8007 | 4.567385 | GAGGAGGCTCGCTCGCTG | 62.567 | 72.222 | 8.69 | 0.00 | 0.00 | 5.18 |
2617 | 8010 | 4.200283 | GTGGAGGAGGCTCGCTCG | 62.200 | 72.222 | 19.86 | 0.00 | 0.00 | 5.03 |
2618 | 8011 | 3.071206 | TGTGGAGGAGGCTCGCTC | 61.071 | 66.667 | 18.96 | 18.96 | 0.00 | 5.03 |
2619 | 8012 | 3.386237 | GTGTGGAGGAGGCTCGCT | 61.386 | 66.667 | 8.69 | 6.82 | 0.00 | 4.93 |
2620 | 8013 | 4.459089 | GGTGTGGAGGAGGCTCGC | 62.459 | 72.222 | 8.69 | 2.81 | 0.00 | 5.03 |
2621 | 8014 | 4.135153 | CGGTGTGGAGGAGGCTCG | 62.135 | 72.222 | 8.69 | 0.00 | 0.00 | 5.03 |
2622 | 8015 | 4.459089 | GCGGTGTGGAGGAGGCTC | 62.459 | 72.222 | 5.78 | 5.78 | 0.00 | 4.70 |
2624 | 8017 | 4.101448 | ATGCGGTGTGGAGGAGGC | 62.101 | 66.667 | 0.00 | 0.00 | 0.00 | 4.70 |
2625 | 8018 | 2.124983 | CATGCGGTGTGGAGGAGG | 60.125 | 66.667 | 0.00 | 0.00 | 0.00 | 4.30 |
2626 | 8019 | 2.821366 | GCATGCGGTGTGGAGGAG | 60.821 | 66.667 | 0.00 | 0.00 | 0.00 | 3.69 |
2627 | 8020 | 4.758251 | CGCATGCGGTGTGGAGGA | 62.758 | 66.667 | 31.99 | 0.00 | 34.65 | 3.71 |
2629 | 8022 | 3.027170 | GAACGCATGCGGTGTGGAG | 62.027 | 63.158 | 39.95 | 13.91 | 40.58 | 3.86 |
2630 | 8023 | 3.047280 | GAACGCATGCGGTGTGGA | 61.047 | 61.111 | 39.95 | 0.00 | 40.58 | 4.02 |
2631 | 8024 | 2.689785 | ATGAACGCATGCGGTGTGG | 61.690 | 57.895 | 39.95 | 15.42 | 40.58 | 4.17 |
2632 | 8025 | 1.512522 | CATGAACGCATGCGGTGTG | 60.513 | 57.895 | 39.95 | 29.95 | 44.76 | 3.82 |
2633 | 8026 | 2.869646 | CATGAACGCATGCGGTGT | 59.130 | 55.556 | 39.95 | 26.27 | 44.76 | 4.16 |
2640 | 8033 | 1.526917 | GCCTAGCCCATGAACGCAT | 60.527 | 57.895 | 0.00 | 0.00 | 34.29 | 4.73 |
2641 | 8034 | 2.124736 | GCCTAGCCCATGAACGCA | 60.125 | 61.111 | 0.00 | 0.00 | 0.00 | 5.24 |
2642 | 8035 | 2.902343 | GGCCTAGCCCATGAACGC | 60.902 | 66.667 | 0.00 | 0.00 | 44.06 | 4.84 |
2657 | 8050 | 3.376546 | AAAAAGGGGCGTCATGGC | 58.623 | 55.556 | 0.00 | 0.00 | 43.88 | 4.40 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.