Multiple sequence alignment - TraesCS3D01G516900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G516900 chr3D 100.000 3257 0 0 1 3257 600425645 600422389 0.000000e+00 6015.0
1 TraesCS3D01G516900 chr3D 86.594 1104 125 16 1142 2242 600529622 600528539 0.000000e+00 1197.0
2 TraesCS3D01G516900 chr3D 95.000 40 1 1 2379 2417 600528344 600528305 9.760000e-06 62.1
3 TraesCS3D01G516900 chr3B 89.669 1510 101 37 818 2317 807441129 807439665 0.000000e+00 1873.0
4 TraesCS3D01G516900 chr3B 86.586 1163 114 25 1085 2242 807483310 807482185 0.000000e+00 1245.0
5 TraesCS3D01G516900 chr3B 90.970 299 18 7 2526 2816 807436870 807436573 8.470000e-106 394.0
6 TraesCS3D01G516900 chr3B 91.324 219 13 4 3 219 807442169 807441955 8.840000e-76 294.0
7 TraesCS3D01G516900 chr3B 83.891 329 30 14 2946 3257 807436530 807436208 3.180000e-75 292.0
8 TraesCS3D01G516900 chr3B 95.000 60 2 1 2358 2417 807439665 807439607 3.460000e-15 93.5
9 TraesCS3D01G516900 chr3B 90.909 44 2 2 2379 2421 807482038 807481996 1.260000e-04 58.4
10 TraesCS3D01G516900 chrUn 89.786 1028 55 18 996 2021 225678968 225679947 0.000000e+00 1271.0
11 TraesCS3D01G516900 chrUn 89.591 1028 57 18 996 2021 269606244 269607223 0.000000e+00 1260.0
12 TraesCS3D01G516900 chrUn 89.428 1031 59 18 996 2024 226785920 226784938 0.000000e+00 1254.0
13 TraesCS3D01G516900 chrUn 89.331 1031 60 18 996 2024 195664988 195664006 0.000000e+00 1249.0
14 TraesCS3D01G516900 chrUn 89.310 1029 58 20 996 2021 347577777 347578756 0.000000e+00 1243.0
15 TraesCS3D01G516900 chrUn 88.300 812 43 20 1213 2021 287107903 287108665 0.000000e+00 926.0
16 TraesCS3D01G516900 chrUn 88.815 599 35 21 996 1592 195649757 195649189 0.000000e+00 706.0
17 TraesCS3D01G516900 chrUn 90.261 421 23 7 1601 2021 301338308 301338710 4.780000e-148 534.0
18 TraesCS3D01G516900 chrUn 86.813 91 5 6 844 934 195649847 195649764 9.620000e-16 95.3
19 TraesCS3D01G516900 chrUn 86.813 91 5 6 844 934 195665078 195664995 9.620000e-16 95.3
20 TraesCS3D01G516900 chrUn 87.500 88 4 6 844 931 225678878 225678958 9.620000e-16 95.3
21 TraesCS3D01G516900 chrUn 86.813 91 5 6 844 934 226786010 226785927 9.620000e-16 95.3
22 TraesCS3D01G516900 chrUn 87.500 88 4 6 844 931 269606154 269606234 9.620000e-16 95.3
23 TraesCS3D01G516900 chrUn 87.500 88 4 6 844 931 347577687 347577767 9.620000e-16 95.3
24 TraesCS3D01G516900 chrUn 87.500 88 4 6 844 931 355716793 355716873 9.620000e-16 95.3
25 TraesCS3D01G516900 chrUn 87.500 88 4 6 844 931 405101580 405101660 9.620000e-16 95.3
26 TraesCS3D01G516900 chr3A 85.211 1163 120 27 1084 2242 730397679 730398793 0.000000e+00 1147.0
27 TraesCS3D01G516900 chr3A 89.316 833 57 21 996 1826 729957120 729956318 0.000000e+00 1016.0
28 TraesCS3D01G516900 chr3A 85.658 760 60 18 2533 3257 729952297 729951552 0.000000e+00 754.0
29 TraesCS3D01G516900 chr3A 88.215 577 37 14 1847 2417 729956048 729955497 0.000000e+00 660.0
30 TraesCS3D01G516900 chr3A 90.909 44 2 2 2379 2421 730398941 730398983 1.260000e-04 58.4
31 TraesCS3D01G516900 chr7A 83.333 918 128 20 1407 2313 36629972 36629069 0.000000e+00 824.0
32 TraesCS3D01G516900 chr5D 84.080 201 18 6 3 202 14664431 14664618 7.180000e-42 182.0
33 TraesCS3D01G516900 chr1D 82.589 224 19 11 3 221 389791911 389792119 2.580000e-41 180.0
34 TraesCS3D01G516900 chr1D 83.178 214 18 11 23 221 460609890 460610100 2.580000e-41 180.0
35 TraesCS3D01G516900 chr1D 81.579 190 20 7 584 768 66602756 66602577 3.390000e-30 143.0
36 TraesCS3D01G516900 chr1A 82.796 186 17 8 584 764 65271408 65271233 5.630000e-33 152.0
37 TraesCS3D01G516900 chr1A 81.579 190 20 7 584 768 65388800 65388621 3.390000e-30 143.0
38 TraesCS3D01G516900 chr1A 81.720 186 19 7 584 764 65381074 65380899 1.220000e-29 141.0
39 TraesCS3D01G516900 chr1A 81.720 186 19 7 584 764 65387685 65387510 1.220000e-29 141.0
40 TraesCS3D01G516900 chr1A 76.899 316 27 18 480 764 65327920 65327620 1.580000e-28 137.0
41 TraesCS3D01G516900 chr1A 81.768 181 18 7 584 759 65329641 65329471 1.580000e-28 137.0
42 TraesCS3D01G516900 chr1A 78.367 245 18 18 584 800 65331189 65330952 3.410000e-25 126.0
43 TraesCS3D01G516900 chr1A 79.570 186 23 8 584 764 65357939 65357764 5.710000e-23 119.0
44 TraesCS3D01G516900 chr1A 96.970 33 1 0 1407 1439 60955932 60955900 4.540000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G516900 chr3D 600422389 600425645 3256 True 6015.00 6015 100.000000 1 3257 1 chr3D.!!$R1 3256
1 TraesCS3D01G516900 chr3D 600528305 600529622 1317 True 629.55 1197 90.797000 1142 2417 2 chr3D.!!$R2 1275
2 TraesCS3D01G516900 chr3B 807481996 807483310 1314 True 651.70 1245 88.747500 1085 2421 2 chr3B.!!$R2 1336
3 TraesCS3D01G516900 chr3B 807436208 807442169 5961 True 589.30 1873 90.170800 3 3257 5 chr3B.!!$R1 3254
4 TraesCS3D01G516900 chrUn 287107903 287108665 762 False 926.00 926 88.300000 1213 2021 1 chrUn.!!$F1 808
5 TraesCS3D01G516900 chrUn 225678878 225679947 1069 False 683.15 1271 88.643000 844 2021 2 chrUn.!!$F5 1177
6 TraesCS3D01G516900 chrUn 269606154 269607223 1069 False 677.65 1260 88.545500 844 2021 2 chrUn.!!$F6 1177
7 TraesCS3D01G516900 chrUn 226784938 226786010 1072 True 674.65 1254 88.120500 844 2024 2 chrUn.!!$R3 1180
8 TraesCS3D01G516900 chrUn 195664006 195665078 1072 True 672.15 1249 88.072000 844 2024 2 chrUn.!!$R2 1180
9 TraesCS3D01G516900 chrUn 347577687 347578756 1069 False 669.15 1243 88.405000 844 2021 2 chrUn.!!$F7 1177
10 TraesCS3D01G516900 chrUn 195649189 195649847 658 True 400.65 706 87.814000 844 1592 2 chrUn.!!$R1 748
11 TraesCS3D01G516900 chr3A 729951552 729957120 5568 True 810.00 1016 87.729667 996 3257 3 chr3A.!!$R1 2261
12 TraesCS3D01G516900 chr3A 730397679 730398983 1304 False 602.70 1147 88.060000 1084 2421 2 chr3A.!!$F1 1337
13 TraesCS3D01G516900 chr7A 36629069 36629972 903 True 824.00 824 83.333000 1407 2313 1 chr7A.!!$R1 906

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
676 1192 0.105964 AATAGCATAGCCGCCGTCAA 59.894 50.0 0.0 0.0 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2314 3168 1.00243 CCTTGCCTTGCTCACTACTCA 59.998 52.381 0.0 0.0 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 1.438651 TTTGCTACATCGACTGGTGC 58.561 50.000 0.00 0.00 0.00 5.01
38 39 2.654749 TCGACTGGTGCAGATTACTG 57.345 50.000 0.00 0.00 45.91 2.74
75 76 0.802494 ATCTTTTGCCGTAACCAGCG 59.198 50.000 0.00 0.00 0.00 5.18
111 112 3.282831 ACTCGCTAATTTGTTTGCCAC 57.717 42.857 0.00 0.00 0.00 5.01
120 121 6.644592 GCTAATTTGTTTGCCACAATCAACTA 59.355 34.615 3.88 0.30 45.17 2.24
121 122 6.843069 AATTTGTTTGCCACAATCAACTAC 57.157 33.333 3.88 0.00 45.17 2.73
122 123 5.590530 TTTGTTTGCCACAATCAACTACT 57.409 34.783 3.88 0.00 45.17 2.57
136 137 6.803154 ATCAACTACTACTGGAGTTTTTGC 57.197 37.500 0.00 0.00 39.81 3.68
144 145 3.754965 ACTGGAGTTTTTGCTGCATAGA 58.245 40.909 1.84 0.00 36.28 1.98
219 222 5.673337 TTCAATCGAGTCTGGAGTTTTTG 57.327 39.130 0.00 0.00 0.00 2.44
221 224 4.750098 TCAATCGAGTCTGGAGTTTTTGTC 59.250 41.667 0.00 0.00 0.00 3.18
223 226 1.792949 CGAGTCTGGAGTTTTTGTCGG 59.207 52.381 0.00 0.00 0.00 4.79
224 227 1.531578 GAGTCTGGAGTTTTTGTCGGC 59.468 52.381 0.00 0.00 0.00 5.54
225 228 0.591659 GTCTGGAGTTTTTGTCGGCC 59.408 55.000 0.00 0.00 0.00 6.13
226 229 0.181587 TCTGGAGTTTTTGTCGGCCA 59.818 50.000 2.24 0.00 0.00 5.36
227 230 0.310854 CTGGAGTTTTTGTCGGCCAC 59.689 55.000 2.24 0.25 0.00 5.01
228 231 1.281656 GGAGTTTTTGTCGGCCACG 59.718 57.895 2.24 0.00 42.74 4.94
237 240 4.077184 TCGGCCACGACCATGACC 62.077 66.667 2.24 0.00 45.59 4.02
241 244 2.358125 CCACGACCATGACCGCAA 60.358 61.111 0.00 0.00 0.00 4.85
255 258 1.293498 CGCAAGGGCAGTCACTACT 59.707 57.895 0.00 0.00 41.24 2.57
257 260 1.878102 CGCAAGGGCAGTCACTACTTT 60.878 52.381 0.00 0.00 41.24 2.66
258 261 2.230660 GCAAGGGCAGTCACTACTTTT 58.769 47.619 0.00 0.00 40.72 2.27
259 262 2.030805 GCAAGGGCAGTCACTACTTTTG 60.031 50.000 0.00 0.00 40.72 2.44
260 263 3.476552 CAAGGGCAGTCACTACTTTTGA 58.523 45.455 0.00 0.00 31.97 2.69
261 264 3.409026 AGGGCAGTCACTACTTTTGAG 57.591 47.619 0.00 0.00 31.97 3.02
262 265 2.039084 AGGGCAGTCACTACTTTTGAGG 59.961 50.000 0.00 0.00 31.97 3.86
263 266 2.224548 GGGCAGTCACTACTTTTGAGGT 60.225 50.000 0.00 0.00 31.97 3.85
264 267 2.808543 GGCAGTCACTACTTTTGAGGTG 59.191 50.000 0.00 0.00 31.97 4.00
267 270 3.248602 CAGTCACTACTTTTGAGGTGTGC 59.751 47.826 0.00 0.00 31.97 4.57
268 271 3.118408 AGTCACTACTTTTGAGGTGTGCA 60.118 43.478 0.00 0.00 29.00 4.57
269 272 3.625764 GTCACTACTTTTGAGGTGTGCAA 59.374 43.478 0.00 0.00 0.00 4.08
270 273 3.876914 TCACTACTTTTGAGGTGTGCAAG 59.123 43.478 0.00 0.00 0.00 4.01
271 274 2.618709 ACTACTTTTGAGGTGTGCAAGC 59.381 45.455 0.00 0.00 0.00 4.01
274 277 2.348605 TTTTGAGGTGTGCAAGCGCC 62.349 55.000 2.29 0.00 39.22 6.53
277 280 4.927782 AGGTGTGCAAGCGCCGAA 62.928 61.111 2.29 0.00 43.39 4.30
278 281 4.683334 GGTGTGCAAGCGCCGAAC 62.683 66.667 2.29 0.00 37.32 3.95
279 282 4.683334 GTGTGCAAGCGCCGAACC 62.683 66.667 2.29 0.00 37.32 3.62
281 284 3.959975 GTGCAAGCGCCGAACCAA 61.960 61.111 2.29 0.00 37.32 3.67
282 285 3.659092 TGCAAGCGCCGAACCAAG 61.659 61.111 2.29 0.00 37.32 3.61
283 286 4.404654 GCAAGCGCCGAACCAAGG 62.405 66.667 2.29 0.00 0.00 3.61
284 287 3.737172 CAAGCGCCGAACCAAGGG 61.737 66.667 2.29 0.00 0.00 3.95
285 288 3.948719 AAGCGCCGAACCAAGGGA 61.949 61.111 2.29 0.00 0.00 4.20
286 289 3.485346 AAGCGCCGAACCAAGGGAA 62.485 57.895 2.29 0.00 0.00 3.97
288 291 2.746277 CGCCGAACCAAGGGAAGG 60.746 66.667 0.00 0.00 0.00 3.46
289 292 2.361230 GCCGAACCAAGGGAAGGG 60.361 66.667 0.00 0.00 0.00 3.95
293 296 1.383019 GAACCAAGGGAAGGGGGTC 59.617 63.158 0.00 0.00 32.01 4.46
294 297 2.151307 GAACCAAGGGAAGGGGGTCC 62.151 65.000 0.00 0.00 32.08 4.46
295 298 3.728373 CCAAGGGAAGGGGGTCCG 61.728 72.222 0.00 0.00 38.72 4.79
296 299 2.609610 CAAGGGAAGGGGGTCCGA 60.610 66.667 0.00 0.00 38.72 4.55
297 300 2.001269 CAAGGGAAGGGGGTCCGAT 61.001 63.158 0.00 0.00 38.72 4.18
298 301 2.001269 AAGGGAAGGGGGTCCGATG 61.001 63.158 0.00 0.00 38.72 3.84
301 304 2.506472 GAAGGGGGTCCGATGCTC 59.494 66.667 0.00 0.00 38.33 4.26
302 305 2.041265 AAGGGGGTCCGATGCTCT 59.959 61.111 0.00 0.00 38.33 4.09
304 307 3.083997 GGGGGTCCGATGCTCTGT 61.084 66.667 0.00 0.00 0.00 3.41
305 308 2.187946 GGGGTCCGATGCTCTGTG 59.812 66.667 0.00 0.00 0.00 3.66
308 311 2.125912 GTCCGATGCTCTGTGCGT 60.126 61.111 0.00 0.00 46.63 5.24
310 313 3.190849 CCGATGCTCTGTGCGTGG 61.191 66.667 0.54 0.13 46.63 4.94
311 314 2.433145 CGATGCTCTGTGCGTGGT 60.433 61.111 0.54 0.00 46.63 4.16
312 315 2.733671 CGATGCTCTGTGCGTGGTG 61.734 63.158 0.54 0.00 46.63 4.17
315 318 2.740055 GCTCTGTGCGTGGTGAGG 60.740 66.667 0.00 0.00 0.00 3.86
316 319 3.051210 CTCTGTGCGTGGTGAGGA 58.949 61.111 0.00 0.00 0.00 3.71
317 320 1.593787 CTCTGTGCGTGGTGAGGAT 59.406 57.895 0.00 0.00 0.00 3.24
318 321 0.817654 CTCTGTGCGTGGTGAGGATA 59.182 55.000 0.00 0.00 0.00 2.59
319 322 1.410517 CTCTGTGCGTGGTGAGGATAT 59.589 52.381 0.00 0.00 0.00 1.63
320 323 1.136891 TCTGTGCGTGGTGAGGATATG 59.863 52.381 0.00 0.00 0.00 1.78
321 324 0.177836 TGTGCGTGGTGAGGATATGG 59.822 55.000 0.00 0.00 0.00 2.74
323 326 1.070758 GTGCGTGGTGAGGATATGGAT 59.929 52.381 0.00 0.00 0.00 3.41
324 327 1.768275 TGCGTGGTGAGGATATGGATT 59.232 47.619 0.00 0.00 0.00 3.01
325 328 2.172505 TGCGTGGTGAGGATATGGATTT 59.827 45.455 0.00 0.00 0.00 2.17
327 330 3.141398 CGTGGTGAGGATATGGATTTGG 58.859 50.000 0.00 0.00 0.00 3.28
328 331 3.490348 GTGGTGAGGATATGGATTTGGG 58.510 50.000 0.00 0.00 0.00 4.12
330 333 3.117550 TGGTGAGGATATGGATTTGGGTG 60.118 47.826 0.00 0.00 0.00 4.61
331 334 2.887152 GTGAGGATATGGATTTGGGTGC 59.113 50.000 0.00 0.00 0.00 5.01
333 336 1.774254 AGGATATGGATTTGGGTGCGA 59.226 47.619 0.00 0.00 0.00 5.10
334 337 2.154462 GGATATGGATTTGGGTGCGAG 58.846 52.381 0.00 0.00 0.00 5.03
335 338 2.224523 GGATATGGATTTGGGTGCGAGA 60.225 50.000 0.00 0.00 0.00 4.04
336 339 2.620251 TATGGATTTGGGTGCGAGAG 57.380 50.000 0.00 0.00 0.00 3.20
337 340 0.911769 ATGGATTTGGGTGCGAGAGA 59.088 50.000 0.00 0.00 0.00 3.10
338 341 0.690192 TGGATTTGGGTGCGAGAGAA 59.310 50.000 0.00 0.00 0.00 2.87
339 342 1.339055 TGGATTTGGGTGCGAGAGAAG 60.339 52.381 0.00 0.00 0.00 2.85
340 343 1.066143 GGATTTGGGTGCGAGAGAAGA 60.066 52.381 0.00 0.00 0.00 2.87
341 344 2.615493 GGATTTGGGTGCGAGAGAAGAA 60.615 50.000 0.00 0.00 0.00 2.52
343 346 1.338107 TTGGGTGCGAGAGAAGAAGA 58.662 50.000 0.00 0.00 0.00 2.87
345 348 1.178276 GGGTGCGAGAGAAGAAGAGA 58.822 55.000 0.00 0.00 0.00 3.10
346 349 1.546476 GGGTGCGAGAGAAGAAGAGAA 59.454 52.381 0.00 0.00 0.00 2.87
347 350 2.167487 GGGTGCGAGAGAAGAAGAGAAT 59.833 50.000 0.00 0.00 0.00 2.40
348 351 3.186119 GGTGCGAGAGAAGAAGAGAATG 58.814 50.000 0.00 0.00 0.00 2.67
350 353 2.232208 TGCGAGAGAAGAAGAGAATGCA 59.768 45.455 0.00 0.00 0.00 3.96
351 354 3.257393 GCGAGAGAAGAAGAGAATGCAA 58.743 45.455 0.00 0.00 0.00 4.08
354 357 5.727239 GCGAGAGAAGAAGAGAATGCAAATG 60.727 44.000 0.00 0.00 0.00 2.32
355 358 5.579904 CGAGAGAAGAAGAGAATGCAAATGA 59.420 40.000 0.00 0.00 0.00 2.57
356 359 6.091849 CGAGAGAAGAAGAGAATGCAAATGAA 59.908 38.462 0.00 0.00 0.00 2.57
357 360 7.360691 CGAGAGAAGAAGAGAATGCAAATGAAA 60.361 37.037 0.00 0.00 0.00 2.69
358 361 8.174733 AGAGAAGAAGAGAATGCAAATGAAAA 57.825 30.769 0.00 0.00 0.00 2.29
360 363 6.860023 AGAAGAAGAGAATGCAAATGAAAACG 59.140 34.615 0.00 0.00 0.00 3.60
361 364 6.076981 AGAAGAGAATGCAAATGAAAACGT 57.923 33.333 0.00 0.00 0.00 3.99
362 365 6.507023 AGAAGAGAATGCAAATGAAAACGTT 58.493 32.000 0.00 0.00 0.00 3.99
363 366 6.638468 AGAAGAGAATGCAAATGAAAACGTTC 59.362 34.615 0.00 0.00 0.00 3.95
364 367 5.222631 AGAGAATGCAAATGAAAACGTTCC 58.777 37.500 0.00 0.00 32.28 3.62
365 368 4.306600 AGAATGCAAATGAAAACGTTCCC 58.693 39.130 0.00 0.00 32.28 3.97
366 369 2.517650 TGCAAATGAAAACGTTCCCC 57.482 45.000 0.00 0.00 32.28 4.81
368 371 2.432510 TGCAAATGAAAACGTTCCCCTT 59.567 40.909 0.00 0.00 32.28 3.95
369 372 3.057019 GCAAATGAAAACGTTCCCCTTC 58.943 45.455 0.00 2.04 32.28 3.46
370 373 3.305110 CAAATGAAAACGTTCCCCTTCG 58.695 45.455 0.00 0.00 32.28 3.79
372 375 2.554370 TGAAAACGTTCCCCTTCGAT 57.446 45.000 0.00 0.00 32.28 3.59
373 376 2.853705 TGAAAACGTTCCCCTTCGATT 58.146 42.857 0.00 0.00 32.28 3.34
374 377 2.809696 TGAAAACGTTCCCCTTCGATTC 59.190 45.455 0.00 0.00 32.28 2.52
375 378 2.853235 AAACGTTCCCCTTCGATTCT 57.147 45.000 0.00 0.00 0.00 2.40
377 380 0.172803 ACGTTCCCCTTCGATTCTCG 59.827 55.000 0.00 0.00 42.10 4.04
378 381 0.172803 CGTTCCCCTTCGATTCTCGT 59.827 55.000 0.00 0.00 41.35 4.18
379 382 1.641577 GTTCCCCTTCGATTCTCGTG 58.358 55.000 0.00 0.00 41.35 4.35
381 384 2.133281 TCCCCTTCGATTCTCGTGTA 57.867 50.000 0.00 0.00 41.35 2.90
382 385 2.022195 TCCCCTTCGATTCTCGTGTAG 58.978 52.381 0.00 0.00 41.35 2.74
383 386 1.067212 CCCCTTCGATTCTCGTGTAGG 59.933 57.143 0.00 3.13 41.35 3.18
384 387 1.536284 CCCTTCGATTCTCGTGTAGGC 60.536 57.143 0.00 0.00 41.35 3.93
385 388 1.467875 CTTCGATTCTCGTGTAGGCG 58.532 55.000 0.00 0.00 41.35 5.52
386 389 0.524816 TTCGATTCTCGTGTAGGCGC 60.525 55.000 0.00 0.00 41.35 6.53
388 391 1.944676 GATTCTCGTGTAGGCGCCG 60.945 63.158 23.20 8.98 0.00 6.46
392 395 4.666397 TCGTGTAGGCGCCGCAAA 62.666 61.111 23.20 12.79 0.00 3.68
393 396 4.147322 CGTGTAGGCGCCGCAAAG 62.147 66.667 23.20 16.70 0.00 2.77
394 397 3.047877 GTGTAGGCGCCGCAAAGT 61.048 61.111 23.20 4.49 0.00 2.66
395 398 2.281208 TGTAGGCGCCGCAAAGTT 60.281 55.556 23.20 3.61 0.00 2.66
396 399 1.894756 TGTAGGCGCCGCAAAGTTT 60.895 52.632 23.20 2.71 0.00 2.66
398 401 1.302192 TAGGCGCCGCAAAGTTTCT 60.302 52.632 23.20 0.95 0.00 2.52
400 403 2.617274 GGCGCCGCAAAGTTTCTCT 61.617 57.895 12.58 0.00 0.00 3.10
401 404 1.154395 GCGCCGCAAAGTTTCTCTC 60.154 57.895 3.15 0.00 0.00 3.20
402 405 1.497722 CGCCGCAAAGTTTCTCTCC 59.502 57.895 0.00 0.00 0.00 3.71
403 406 1.876664 GCCGCAAAGTTTCTCTCCC 59.123 57.895 0.00 0.00 0.00 4.30
404 407 0.606673 GCCGCAAAGTTTCTCTCCCT 60.607 55.000 0.00 0.00 0.00 4.20
405 408 1.443802 CCGCAAAGTTTCTCTCCCTC 58.556 55.000 0.00 0.00 0.00 4.30
406 409 1.270839 CCGCAAAGTTTCTCTCCCTCA 60.271 52.381 0.00 0.00 0.00 3.86
407 410 2.616510 CCGCAAAGTTTCTCTCCCTCAT 60.617 50.000 0.00 0.00 0.00 2.90
408 411 2.675348 CGCAAAGTTTCTCTCCCTCATC 59.325 50.000 0.00 0.00 0.00 2.92
409 412 3.618507 CGCAAAGTTTCTCTCCCTCATCT 60.619 47.826 0.00 0.00 0.00 2.90
410 413 3.688673 GCAAAGTTTCTCTCCCTCATCTG 59.311 47.826 0.00 0.00 0.00 2.90
411 414 3.625649 AAGTTTCTCTCCCTCATCTGC 57.374 47.619 0.00 0.00 0.00 4.26
412 415 2.831565 AGTTTCTCTCCCTCATCTGCT 58.168 47.619 0.00 0.00 0.00 4.24
414 417 2.765699 GTTTCTCTCCCTCATCTGCTCT 59.234 50.000 0.00 0.00 0.00 4.09
415 418 2.070305 TCTCTCCCTCATCTGCTCTG 57.930 55.000 0.00 0.00 0.00 3.35
417 420 1.409790 CTCTCCCTCATCTGCTCTGTG 59.590 57.143 0.00 0.00 0.00 3.66
419 422 1.136695 CTCCCTCATCTGCTCTGTGTC 59.863 57.143 0.00 0.00 0.00 3.67
422 659 2.697229 CCCTCATCTGCTCTGTGTCATA 59.303 50.000 0.00 0.00 0.00 2.15
424 661 3.492309 CCTCATCTGCTCTGTGTCATACC 60.492 52.174 0.00 0.00 0.00 2.73
427 664 0.174389 CTGCTCTGTGTCATACCGCT 59.826 55.000 0.00 0.00 0.00 5.52
428 665 1.405463 CTGCTCTGTGTCATACCGCTA 59.595 52.381 0.00 0.00 0.00 4.26
431 668 3.259064 GCTCTGTGTCATACCGCTAAAA 58.741 45.455 0.00 0.00 0.00 1.52
452 689 4.348863 AAAACTGCTCTGTGTCATCTCT 57.651 40.909 0.00 0.00 0.00 3.10
453 690 3.591196 AACTGCTCTGTGTCATCTCTC 57.409 47.619 0.00 0.00 0.00 3.20
454 691 1.824230 ACTGCTCTGTGTCATCTCTCC 59.176 52.381 0.00 0.00 0.00 3.71
455 692 2.101783 CTGCTCTGTGTCATCTCTCCT 58.898 52.381 0.00 0.00 0.00 3.69
456 693 1.823610 TGCTCTGTGTCATCTCTCCTG 59.176 52.381 0.00 0.00 0.00 3.86
457 694 2.098614 GCTCTGTGTCATCTCTCCTGA 58.901 52.381 0.00 0.00 0.00 3.86
458 695 2.694628 GCTCTGTGTCATCTCTCCTGAT 59.305 50.000 0.00 0.00 0.00 2.90
460 697 3.295093 TCTGTGTCATCTCTCCTGATCC 58.705 50.000 0.00 0.00 0.00 3.36
462 699 3.029570 TGTGTCATCTCTCCTGATCCAG 58.970 50.000 0.00 0.00 0.00 3.86
501 1017 2.590007 CCTGCTACTCATGGCGGC 60.590 66.667 0.00 0.00 37.37 6.53
503 1019 1.886313 CTGCTACTCATGGCGGCTG 60.886 63.158 11.43 6.30 34.35 4.85
504 1020 2.302199 CTGCTACTCATGGCGGCTGA 62.302 60.000 11.43 10.51 34.35 4.26
510 1026 3.818787 CATGGCGGCTGAAGCACC 61.819 66.667 11.43 5.70 44.36 5.01
518 1034 3.114616 CTGAAGCACCTCCGCGTG 61.115 66.667 4.92 0.00 36.85 5.34
537 1053 2.723271 GCGTTGTCGTCGTCGTCA 60.723 61.111 1.33 0.00 39.49 4.35
538 1054 2.078914 GCGTTGTCGTCGTCGTCAT 61.079 57.895 2.91 0.00 39.49 3.06
539 1055 1.971336 CGTTGTCGTCGTCGTCATC 59.029 57.895 2.91 2.25 35.45 2.92
540 1056 1.708375 CGTTGTCGTCGTCGTCATCG 61.708 60.000 14.84 14.84 39.85 3.84
541 1057 1.794785 TTGTCGTCGTCGTCATCGC 60.795 57.895 2.91 0.00 35.45 4.58
542 1058 2.943034 GTCGTCGTCGTCATCGCC 60.943 66.667 1.33 0.00 38.33 5.54
543 1059 3.424859 TCGTCGTCGTCATCGCCA 61.425 61.111 1.33 0.00 38.33 5.69
544 1060 3.238241 CGTCGTCGTCATCGCCAC 61.238 66.667 0.00 0.00 36.96 5.01
545 1061 2.879462 GTCGTCGTCATCGCCACC 60.879 66.667 0.00 0.00 36.96 4.61
546 1062 4.124351 TCGTCGTCATCGCCACCC 62.124 66.667 0.00 0.00 36.96 4.61
548 1064 4.832608 GTCGTCATCGCCACCCCC 62.833 72.222 0.00 0.00 36.96 5.40
550 1066 4.402528 CGTCATCGCCACCCCCAA 62.403 66.667 0.00 0.00 0.00 4.12
551 1067 2.750237 GTCATCGCCACCCCCAAC 60.750 66.667 0.00 0.00 0.00 3.77
552 1068 3.253061 TCATCGCCACCCCCAACA 61.253 61.111 0.00 0.00 0.00 3.33
553 1069 2.751436 CATCGCCACCCCCAACAG 60.751 66.667 0.00 0.00 0.00 3.16
554 1070 4.740822 ATCGCCACCCCCAACAGC 62.741 66.667 0.00 0.00 0.00 4.40
556 1072 4.974721 CGCCACCCCCAACAGCTT 62.975 66.667 0.00 0.00 0.00 3.74
557 1073 3.305516 GCCACCCCCAACAGCTTG 61.306 66.667 0.00 0.00 0.00 4.01
558 1074 2.601367 CCACCCCCAACAGCTTGG 60.601 66.667 0.00 0.00 46.15 3.61
559 1075 3.305516 CACCCCCAACAGCTTGGC 61.306 66.667 0.00 0.00 45.32 4.52
560 1076 3.511610 ACCCCCAACAGCTTGGCT 61.512 61.111 0.00 0.00 45.32 4.75
582 1098 4.657824 CCGTCGTCGTTGCTGGGT 62.658 66.667 0.71 0.00 35.01 4.51
583 1099 3.103911 CGTCGTCGTTGCTGGGTC 61.104 66.667 0.00 0.00 0.00 4.46
584 1100 2.737376 GTCGTCGTTGCTGGGTCC 60.737 66.667 0.00 0.00 0.00 4.46
585 1101 2.915659 TCGTCGTTGCTGGGTCCT 60.916 61.111 0.00 0.00 0.00 3.85
586 1102 2.432628 CGTCGTTGCTGGGTCCTC 60.433 66.667 0.00 0.00 0.00 3.71
587 1103 2.047179 GTCGTTGCTGGGTCCTCC 60.047 66.667 0.00 0.00 0.00 4.30
602 1118 4.414956 TCCCTGGGCTCCCGTCAT 62.415 66.667 8.22 0.00 39.42 3.06
603 1119 3.866582 CCCTGGGCTCCCGTCATC 61.867 72.222 0.00 0.00 39.42 2.92
604 1120 3.866582 CCTGGGCTCCCGTCATCC 61.867 72.222 0.00 0.00 39.42 3.51
605 1121 3.866582 CTGGGCTCCCGTCATCCC 61.867 72.222 0.00 0.00 39.42 3.85
633 1149 3.793144 GGCAACGAAGGAGCAGCG 61.793 66.667 0.00 0.00 0.00 5.18
634 1150 2.738521 GCAACGAAGGAGCAGCGA 60.739 61.111 0.00 0.00 0.00 4.93
635 1151 2.734673 GCAACGAAGGAGCAGCGAG 61.735 63.158 0.00 0.00 0.00 5.03
636 1152 2.097038 CAACGAAGGAGCAGCGAGG 61.097 63.158 0.00 0.00 0.00 4.63
637 1153 2.276116 AACGAAGGAGCAGCGAGGA 61.276 57.895 0.00 0.00 0.00 3.71
638 1154 1.816863 AACGAAGGAGCAGCGAGGAA 61.817 55.000 0.00 0.00 0.00 3.36
639 1155 1.518133 CGAAGGAGCAGCGAGGAAG 60.518 63.158 0.00 0.00 0.00 3.46
640 1156 1.813337 GAAGGAGCAGCGAGGAAGC 60.813 63.158 0.00 0.00 37.41 3.86
641 1157 3.322318 AAGGAGCAGCGAGGAAGCC 62.322 63.158 0.00 0.00 38.01 4.35
642 1158 4.847444 GGAGCAGCGAGGAAGCCC 62.847 72.222 0.00 0.00 38.01 5.19
644 1160 2.364317 AGCAGCGAGGAAGCCCTA 60.364 61.111 0.00 0.00 44.53 3.53
645 1161 2.107953 GCAGCGAGGAAGCCCTAG 59.892 66.667 0.00 0.00 44.53 3.02
646 1162 2.818132 CAGCGAGGAAGCCCTAGG 59.182 66.667 0.06 0.06 44.53 3.02
664 1180 2.901840 CACCGCCGCCAATAGCAT 60.902 61.111 0.00 0.00 44.04 3.79
665 1181 1.596752 CACCGCCGCCAATAGCATA 60.597 57.895 0.00 0.00 44.04 3.14
666 1182 1.301716 ACCGCCGCCAATAGCATAG 60.302 57.895 0.00 0.00 44.04 2.23
667 1183 2.680913 CCGCCGCCAATAGCATAGC 61.681 63.158 0.00 0.00 44.04 2.97
668 1184 2.680913 CGCCGCCAATAGCATAGCC 61.681 63.158 0.00 0.00 44.04 3.93
669 1185 2.680913 GCCGCCAATAGCATAGCCG 61.681 63.158 0.00 0.00 44.04 5.52
670 1186 2.680913 CCGCCAATAGCATAGCCGC 61.681 63.158 0.00 0.00 44.04 6.53
671 1187 2.680913 CGCCAATAGCATAGCCGCC 61.681 63.158 0.00 0.00 44.04 6.13
672 1188 2.680913 GCCAATAGCATAGCCGCCG 61.681 63.158 0.00 0.00 42.97 6.46
673 1189 1.301716 CCAATAGCATAGCCGCCGT 60.302 57.895 0.00 0.00 0.00 5.68
674 1190 1.291877 CCAATAGCATAGCCGCCGTC 61.292 60.000 0.00 0.00 0.00 4.79
675 1191 0.599991 CAATAGCATAGCCGCCGTCA 60.600 55.000 0.00 0.00 0.00 4.35
676 1192 0.105964 AATAGCATAGCCGCCGTCAA 59.894 50.000 0.00 0.00 0.00 3.18
677 1193 0.600255 ATAGCATAGCCGCCGTCAAC 60.600 55.000 0.00 0.00 0.00 3.18
678 1194 1.950973 TAGCATAGCCGCCGTCAACA 61.951 55.000 0.00 0.00 0.00 3.33
679 1195 2.813179 GCATAGCCGCCGTCAACAG 61.813 63.158 0.00 0.00 0.00 3.16
680 1196 2.511600 ATAGCCGCCGTCAACAGC 60.512 61.111 0.00 0.00 0.00 4.40
681 1197 3.019003 ATAGCCGCCGTCAACAGCT 62.019 57.895 0.00 0.00 37.58 4.24
682 1198 2.521958 ATAGCCGCCGTCAACAGCTT 62.522 55.000 0.00 0.00 35.03 3.74
683 1199 4.389576 GCCGCCGTCAACAGCTTG 62.390 66.667 0.00 0.00 0.00 4.01
684 1200 3.726517 CCGCCGTCAACAGCTTGG 61.727 66.667 0.00 0.00 0.00 3.61
685 1201 4.389576 CGCCGTCAACAGCTTGGC 62.390 66.667 0.00 0.00 42.29 4.52
686 1202 4.043200 GCCGTCAACAGCTTGGCC 62.043 66.667 0.00 0.00 39.83 5.36
687 1203 3.726517 CCGTCAACAGCTTGGCCG 61.727 66.667 0.00 0.00 0.00 6.13
688 1204 4.389576 CGTCAACAGCTTGGCCGC 62.390 66.667 0.00 0.00 0.00 6.53
689 1205 4.043200 GTCAACAGCTTGGCCGCC 62.043 66.667 1.04 1.04 0.00 6.13
745 1261 3.423154 CCTCGCACCACCGCTTTC 61.423 66.667 0.00 0.00 0.00 2.62
746 1262 2.357517 CTCGCACCACCGCTTTCT 60.358 61.111 0.00 0.00 0.00 2.52
747 1263 2.664851 TCGCACCACCGCTTTCTG 60.665 61.111 0.00 0.00 0.00 3.02
748 1264 4.389576 CGCACCACCGCTTTCTGC 62.390 66.667 0.00 0.00 38.57 4.26
749 1265 4.043200 GCACCACCGCTTTCTGCC 62.043 66.667 0.00 0.00 38.78 4.85
750 1266 3.726517 CACCACCGCTTTCTGCCG 61.727 66.667 0.00 0.00 38.78 5.69
785 1301 4.936823 GTCACGCGACACCCACGT 62.937 66.667 15.93 0.00 42.13 4.49
786 1302 4.634133 TCACGCGACACCCACGTC 62.634 66.667 15.93 0.00 38.09 4.34
792 1308 4.338539 GACACCCACGTCGACGCT 62.339 66.667 35.92 20.88 44.43 5.07
793 1309 4.640855 ACACCCACGTCGACGCTG 62.641 66.667 35.92 29.03 44.43 5.18
801 1317 3.490759 GTCGACGCTGCACCCATG 61.491 66.667 0.00 0.00 0.00 3.66
833 1349 1.528339 ATGCCGTCTCATGCATCCA 59.472 52.632 0.00 0.00 44.58 3.41
834 1350 0.109913 ATGCCGTCTCATGCATCCAT 59.890 50.000 0.00 0.00 44.58 3.41
876 1397 2.838736 TGTCAAACACAAGAGAGGAGC 58.161 47.619 0.00 0.00 29.30 4.70
903 1424 5.236478 CGTCTATATAAAACCAAGGCAGGTG 59.764 44.000 2.22 0.00 42.25 4.00
904 1425 5.531287 GTCTATATAAAACCAAGGCAGGTGG 59.469 44.000 2.22 1.47 42.25 4.61
988 1509 0.613292 GGAGAGACAGAGGCAGGTGA 60.613 60.000 0.00 0.00 0.00 4.02
1011 1532 3.532896 TCGAGAGATGGTTTGTGCC 57.467 52.632 0.00 0.00 33.31 5.01
1012 1533 0.976641 TCGAGAGATGGTTTGTGCCT 59.023 50.000 0.00 0.00 33.31 4.75
1038 1559 4.127040 AGTGCTCCTCTGCTCGCG 62.127 66.667 0.00 0.00 0.00 5.87
1063 1584 3.765578 TAGTAGCGGCGCTGGCAA 61.766 61.111 41.59 21.69 40.10 4.52
1310 1831 0.108756 GACTGCTTCGTCCAGGTACC 60.109 60.000 2.73 2.73 34.65 3.34
1311 1832 0.542232 ACTGCTTCGTCCAGGTACCT 60.542 55.000 9.21 9.21 34.65 3.08
1312 1833 0.608640 CTGCTTCGTCCAGGTACCTT 59.391 55.000 13.15 0.00 0.00 3.50
1313 1834 1.822990 CTGCTTCGTCCAGGTACCTTA 59.177 52.381 13.15 0.00 0.00 2.69
1314 1835 2.431057 CTGCTTCGTCCAGGTACCTTAT 59.569 50.000 13.15 0.00 0.00 1.73
1374 1900 2.953648 CCAGTATTTGGCTCATGCATCA 59.046 45.455 0.00 0.00 40.87 3.07
1383 1909 0.387929 CTCATGCATCAATGGGTGCC 59.612 55.000 1.98 0.00 40.56 5.01
1384 1910 0.032912 TCATGCATCAATGGGTGCCT 60.033 50.000 1.98 0.00 40.56 4.75
1391 1918 3.650950 AATGGGTGCCTCGTGCCT 61.651 61.111 0.00 0.00 40.16 4.75
1488 2044 3.726517 CCGCCAAACCTCACGCTG 61.727 66.667 0.00 0.00 0.00 5.18
1747 2303 1.355210 GTGTTCCACAACCACAGCG 59.645 57.895 0.00 0.00 34.08 5.18
2077 2900 0.741221 CAGCCAGCGGTACTTCTTCC 60.741 60.000 0.00 0.00 0.00 3.46
2260 3092 7.198306 GAGAGCTACTCCACTAGTTAGATTC 57.802 44.000 8.64 3.65 39.80 2.52
2261 3093 6.906848 AGAGCTACTCCACTAGTTAGATTCT 58.093 40.000 8.64 5.43 39.80 2.40
2263 3095 8.496088 AGAGCTACTCCACTAGTTAGATTCTAA 58.504 37.037 8.64 1.90 39.80 2.10
2264 3096 9.292195 GAGCTACTCCACTAGTTAGATTCTAAT 57.708 37.037 9.28 2.49 39.80 1.73
2265 3097 9.073475 AGCTACTCCACTAGTTAGATTCTAATG 57.927 37.037 9.28 4.05 39.80 1.90
2267 3099 7.906199 ACTCCACTAGTTAGATTCTAATGCT 57.094 36.000 9.28 5.77 33.35 3.79
2272 3104 9.685828 CCACTAGTTAGATTCTAATGCTAGAAC 57.314 37.037 24.23 9.52 44.94 3.01
2273 3105 9.685828 CACTAGTTAGATTCTAATGCTAGAACC 57.314 37.037 24.23 7.17 44.94 3.62
2274 3106 8.862085 ACTAGTTAGATTCTAATGCTAGAACCC 58.138 37.037 24.23 6.65 44.94 4.11
2276 3108 6.550108 AGTTAGATTCTAATGCTAGAACCCGA 59.450 38.462 9.28 0.00 44.94 5.14
2277 3109 5.461032 AGATTCTAATGCTAGAACCCGAG 57.539 43.478 0.00 0.00 44.94 4.63
2354 3221 1.333931 GCATGATGATGAGGCTGTGTG 59.666 52.381 0.00 0.00 0.00 3.82
2355 3222 1.333931 CATGATGATGAGGCTGTGTGC 59.666 52.381 0.00 0.00 41.94 4.57
2356 3223 0.325602 TGATGATGAGGCTGTGTGCA 59.674 50.000 0.00 0.00 45.15 4.57
2426 7051 3.117491 TGTTGCTTGTTCTCTCTCAGG 57.883 47.619 0.00 0.00 0.00 3.86
2497 7122 6.492429 TCTTGTCACAAGGCTAAGAGTAACTA 59.508 38.462 17.71 0.00 0.00 2.24
2498 7123 6.022163 TGTCACAAGGCTAAGAGTAACTAC 57.978 41.667 0.00 0.00 0.00 2.73
2499 7124 5.773680 TGTCACAAGGCTAAGAGTAACTACT 59.226 40.000 0.00 0.00 39.71 2.57
2615 7241 2.030185 AGCGCACATAGAATACCCGTAG 60.030 50.000 11.47 0.00 0.00 3.51
2616 7242 2.288030 GCGCACATAGAATACCCGTAGT 60.288 50.000 0.30 0.00 0.00 2.73
2619 7245 4.443394 CGCACATAGAATACCCGTAGTTTC 59.557 45.833 0.00 0.00 0.00 2.78
2620 7246 5.598769 GCACATAGAATACCCGTAGTTTCT 58.401 41.667 0.00 0.00 33.37 2.52
2621 7247 5.462398 GCACATAGAATACCCGTAGTTTCTG 59.538 44.000 0.00 0.00 32.06 3.02
2623 7249 5.895534 ACATAGAATACCCGTAGTTTCTGGA 59.104 40.000 0.00 0.00 32.06 3.86
2624 7250 6.040616 ACATAGAATACCCGTAGTTTCTGGAG 59.959 42.308 0.00 0.00 32.06 3.86
2625 7251 4.607239 AGAATACCCGTAGTTTCTGGAGA 58.393 43.478 0.00 0.00 29.95 3.71
2626 7252 4.645588 AGAATACCCGTAGTTTCTGGAGAG 59.354 45.833 0.00 0.00 29.95 3.20
2778 7410 2.030274 CGGTTCTCACATGGGGAAAAAC 60.030 50.000 0.00 1.27 0.00 2.43
2781 7413 4.368315 GTTCTCACATGGGGAAAAACAAC 58.632 43.478 0.00 0.00 0.00 3.32
2782 7414 2.621055 TCTCACATGGGGAAAAACAACG 59.379 45.455 0.00 0.00 0.00 4.10
2783 7415 2.360801 CTCACATGGGGAAAAACAACGT 59.639 45.455 0.00 0.00 0.00 3.99
2784 7416 2.359531 TCACATGGGGAAAAACAACGTC 59.640 45.455 0.00 0.00 0.00 4.34
2785 7417 2.099921 CACATGGGGAAAAACAACGTCA 59.900 45.455 0.00 0.00 0.00 4.35
2786 7418 2.360801 ACATGGGGAAAAACAACGTCAG 59.639 45.455 0.00 0.00 0.00 3.51
2787 7419 2.421751 TGGGGAAAAACAACGTCAGA 57.578 45.000 0.00 0.00 0.00 3.27
2829 7474 7.859613 ATATGTGATTTCAGAATACTCGTCG 57.140 36.000 0.00 0.00 0.00 5.12
2830 7475 5.305139 TGTGATTTCAGAATACTCGTCGA 57.695 39.130 0.00 0.00 0.00 4.20
2831 7476 5.093457 TGTGATTTCAGAATACTCGTCGAC 58.907 41.667 5.18 5.18 0.00 4.20
2832 7477 5.106277 TGTGATTTCAGAATACTCGTCGACT 60.106 40.000 14.70 0.00 0.00 4.18
2835 7480 4.337985 TTCAGAATACTCGTCGACTGAC 57.662 45.455 14.70 1.13 41.91 3.51
2840 7485 1.073964 TACTCGTCGACTGACTTCGG 58.926 55.000 14.70 3.51 43.21 4.30
2842 7487 0.237761 CTCGTCGACTGACTTCGGTT 59.762 55.000 14.70 0.00 43.21 4.44
2848 7493 2.095212 TCGACTGACTTCGGTTCTCATG 60.095 50.000 0.00 0.00 39.58 3.07
2851 7496 1.550524 CTGACTTCGGTTCTCATGGGA 59.449 52.381 0.00 0.00 0.00 4.37
2854 7499 3.181449 TGACTTCGGTTCTCATGGGAAAA 60.181 43.478 10.26 0.00 0.00 2.29
2879 7524 2.849942 ACATGCAGTACAAACAGCTCA 58.150 42.857 0.00 0.00 38.81 4.26
2885 7530 4.452114 TGCAGTACAAACAGCTCATGTAAG 59.548 41.667 0.00 3.26 43.00 2.34
2918 7563 4.512484 TCACGATGTCATATTTCCAGCAA 58.488 39.130 0.00 0.00 0.00 3.91
2937 7582 4.193865 GCAAATTGCTTAATGGCCATTCT 58.806 39.130 33.89 15.01 40.96 2.40
2939 7584 5.816777 GCAAATTGCTTAATGGCCATTCTAA 59.183 36.000 33.89 21.92 40.96 2.10
2940 7585 6.018507 GCAAATTGCTTAATGGCCATTCTAAG 60.019 38.462 33.89 29.62 40.96 2.18
2942 7587 7.607615 AATTGCTTAATGGCCATTCTAAGAT 57.392 32.000 31.89 20.18 32.50 2.40
2943 7588 6.395426 TTGCTTAATGGCCATTCTAAGATG 57.605 37.500 31.89 20.02 32.50 2.90
2944 7589 4.279169 TGCTTAATGGCCATTCTAAGATGC 59.721 41.667 31.89 26.35 32.50 3.91
2950 7603 2.615912 GGCCATTCTAAGATGCACAGAC 59.384 50.000 0.00 0.00 0.00 3.51
2960 7613 1.086067 ATGCACAGACGCTGGAATCG 61.086 55.000 10.80 0.00 35.51 3.34
2975 7635 0.245539 AATCGACAATCGTCCACGGT 59.754 50.000 0.00 0.00 41.35 4.83
3055 7716 9.659830 CATGTAACAGTTAACTTGAAGTAAACC 57.340 33.333 5.07 0.00 0.00 3.27
3061 7722 5.465724 AGTTAACTTGAAGTAAACCTCAGCG 59.534 40.000 1.12 0.00 0.00 5.18
3075 7736 3.758554 ACCTCAGCGCTTAACATTTCAAT 59.241 39.130 7.50 0.00 0.00 2.57
3133 7794 4.648007 TGGAACACCAGAGGCTCT 57.352 55.556 12.24 12.24 0.00 4.09
3134 7795 3.786495 TGGAACACCAGAGGCTCTA 57.214 52.632 18.26 0.00 0.00 2.43
3135 7796 1.561643 TGGAACACCAGAGGCTCTAG 58.438 55.000 18.26 13.11 0.00 2.43
3136 7797 1.203187 TGGAACACCAGAGGCTCTAGT 60.203 52.381 18.26 13.89 0.00 2.57
3137 7798 1.903183 GGAACACCAGAGGCTCTAGTT 59.097 52.381 18.26 20.40 0.00 2.24
3138 7799 2.093921 GGAACACCAGAGGCTCTAGTTC 60.094 54.545 29.53 29.53 34.27 3.01
3139 7800 1.562783 ACACCAGAGGCTCTAGTTCC 58.437 55.000 18.26 0.00 0.00 3.62
3140 7801 1.203187 ACACCAGAGGCTCTAGTTCCA 60.203 52.381 18.26 0.00 0.00 3.53
3141 7802 1.902508 CACCAGAGGCTCTAGTTCCAA 59.097 52.381 18.26 0.00 0.00 3.53
3142 7803 2.303022 CACCAGAGGCTCTAGTTCCAAA 59.697 50.000 18.26 0.00 0.00 3.28
3143 7804 2.979678 ACCAGAGGCTCTAGTTCCAAAA 59.020 45.455 18.26 0.00 0.00 2.44
3160 7834 5.997385 TCCAAAACAAAATCTTAGTCGCTC 58.003 37.500 0.00 0.00 0.00 5.03
3239 7930 5.000012 AGATTTCAGACCGTCTCACATAC 58.000 43.478 0.00 0.00 0.00 2.39
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 2.805671 CACCAGTCGATGTAGCAAAACA 59.194 45.455 0.00 0.00 0.00 2.83
111 112 7.041098 AGCAAAAACTCCAGTAGTAGTTGATTG 60.041 37.037 0.00 0.00 37.50 2.67
120 121 2.930950 TGCAGCAAAAACTCCAGTAGT 58.069 42.857 0.00 0.00 41.49 2.73
121 122 4.937620 TCTATGCAGCAAAAACTCCAGTAG 59.062 41.667 0.00 0.00 0.00 2.57
122 123 4.905429 TCTATGCAGCAAAAACTCCAGTA 58.095 39.130 0.00 0.00 0.00 2.74
224 227 2.358125 TTGCGGTCATGGTCGTGG 60.358 61.111 9.57 0.00 0.00 4.94
225 228 2.390599 CCTTGCGGTCATGGTCGTG 61.391 63.158 9.57 0.00 33.97 4.35
226 229 2.047274 CCTTGCGGTCATGGTCGT 60.047 61.111 9.57 0.00 33.97 4.34
227 230 2.819595 CCCTTGCGGTCATGGTCG 60.820 66.667 0.00 0.00 36.17 4.79
228 231 3.134127 GCCCTTGCGGTCATGGTC 61.134 66.667 0.00 0.00 36.17 4.02
230 233 3.136123 CTGCCCTTGCGGTCATGG 61.136 66.667 0.00 0.00 41.78 3.66
237 240 0.320771 AAGTAGTGACTGCCCTTGCG 60.321 55.000 0.00 0.00 41.78 4.85
238 241 1.897560 AAAGTAGTGACTGCCCTTGC 58.102 50.000 0.00 0.00 35.52 4.01
239 242 3.476552 TCAAAAGTAGTGACTGCCCTTG 58.523 45.455 0.00 0.67 35.52 3.61
240 243 3.496870 CCTCAAAAGTAGTGACTGCCCTT 60.497 47.826 0.00 0.00 35.52 3.95
241 244 2.039084 CCTCAAAAGTAGTGACTGCCCT 59.961 50.000 0.00 0.00 35.52 5.19
244 247 3.248602 CACACCTCAAAAGTAGTGACTGC 59.751 47.826 0.00 0.00 35.52 4.40
245 248 3.248602 GCACACCTCAAAAGTAGTGACTG 59.751 47.826 0.00 0.00 35.52 3.51
246 249 3.118408 TGCACACCTCAAAAGTAGTGACT 60.118 43.478 0.00 0.00 37.59 3.41
247 250 3.202906 TGCACACCTCAAAAGTAGTGAC 58.797 45.455 0.00 0.00 34.33 3.67
248 251 3.552132 TGCACACCTCAAAAGTAGTGA 57.448 42.857 0.00 0.00 34.33 3.41
249 252 3.548818 GCTTGCACACCTCAAAAGTAGTG 60.549 47.826 0.00 0.00 36.30 2.74
250 253 2.618709 GCTTGCACACCTCAAAAGTAGT 59.381 45.455 0.00 0.00 0.00 2.73
251 254 2.349817 CGCTTGCACACCTCAAAAGTAG 60.350 50.000 0.00 0.00 0.00 2.57
253 256 0.381801 CGCTTGCACACCTCAAAAGT 59.618 50.000 0.00 0.00 0.00 2.66
255 258 1.065600 GCGCTTGCACACCTCAAAA 59.934 52.632 0.00 0.00 38.92 2.44
257 260 3.286751 GGCGCTTGCACACCTCAA 61.287 61.111 7.64 0.00 41.71 3.02
260 263 4.927782 TTCGGCGCTTGCACACCT 62.928 61.111 7.64 0.00 41.71 4.00
261 264 4.683334 GTTCGGCGCTTGCACACC 62.683 66.667 7.64 0.00 41.71 4.16
262 265 4.683334 GGTTCGGCGCTTGCACAC 62.683 66.667 7.64 0.00 41.71 3.82
264 267 3.879351 CTTGGTTCGGCGCTTGCAC 62.879 63.158 7.64 0.30 41.71 4.57
267 270 3.737172 CCCTTGGTTCGGCGCTTG 61.737 66.667 7.64 0.00 0.00 4.01
268 271 3.485346 TTCCCTTGGTTCGGCGCTT 62.485 57.895 7.64 0.00 0.00 4.68
269 272 3.901797 CTTCCCTTGGTTCGGCGCT 62.902 63.158 7.64 0.00 0.00 5.92
270 273 3.431725 CTTCCCTTGGTTCGGCGC 61.432 66.667 0.00 0.00 0.00 6.53
271 274 2.746277 CCTTCCCTTGGTTCGGCG 60.746 66.667 0.00 0.00 0.00 6.46
274 277 2.355115 CCCCCTTCCCTTGGTTCG 59.645 66.667 0.00 0.00 0.00 3.95
275 278 1.383019 GACCCCCTTCCCTTGGTTC 59.617 63.158 0.00 0.00 0.00 3.62
276 279 2.167729 GGACCCCCTTCCCTTGGTT 61.168 63.158 0.00 0.00 0.00 3.67
277 280 2.534533 GGACCCCCTTCCCTTGGT 60.535 66.667 0.00 0.00 0.00 3.67
278 281 3.728373 CGGACCCCCTTCCCTTGG 61.728 72.222 0.00 0.00 31.03 3.61
279 282 2.001269 ATCGGACCCCCTTCCCTTG 61.001 63.158 0.00 0.00 31.03 3.61
280 283 2.001269 CATCGGACCCCCTTCCCTT 61.001 63.158 0.00 0.00 31.03 3.95
281 284 2.366972 CATCGGACCCCCTTCCCT 60.367 66.667 0.00 0.00 31.03 4.20
282 285 4.191015 GCATCGGACCCCCTTCCC 62.191 72.222 0.00 0.00 31.03 3.97
283 286 3.090532 AGCATCGGACCCCCTTCC 61.091 66.667 0.00 0.00 0.00 3.46
284 287 2.066999 AGAGCATCGGACCCCCTTC 61.067 63.158 0.00 0.00 42.67 3.46
285 288 2.041265 AGAGCATCGGACCCCCTT 59.959 61.111 0.00 0.00 42.67 3.95
286 289 2.765807 CAGAGCATCGGACCCCCT 60.766 66.667 0.00 0.00 42.67 4.79
288 291 2.187946 CACAGAGCATCGGACCCC 59.812 66.667 0.00 0.00 42.67 4.95
289 292 2.512515 GCACAGAGCATCGGACCC 60.513 66.667 0.00 0.00 44.79 4.46
293 296 3.190849 CCACGCACAGAGCATCGG 61.191 66.667 0.00 0.00 46.13 4.18
294 297 2.433145 ACCACGCACAGAGCATCG 60.433 61.111 0.00 0.00 46.13 3.84
295 298 1.357258 CTCACCACGCACAGAGCATC 61.357 60.000 0.00 0.00 46.13 3.91
296 299 1.375140 CTCACCACGCACAGAGCAT 60.375 57.895 0.00 0.00 46.13 3.79
297 300 2.029518 CTCACCACGCACAGAGCA 59.970 61.111 0.00 0.00 46.13 4.26
298 301 2.513026 ATCCTCACCACGCACAGAGC 62.513 60.000 0.00 0.00 40.87 4.09
301 304 1.575244 CATATCCTCACCACGCACAG 58.425 55.000 0.00 0.00 0.00 3.66
302 305 0.177836 CCATATCCTCACCACGCACA 59.822 55.000 0.00 0.00 0.00 4.57
304 307 1.423584 ATCCATATCCTCACCACGCA 58.576 50.000 0.00 0.00 0.00 5.24
305 308 2.549754 CAAATCCATATCCTCACCACGC 59.450 50.000 0.00 0.00 0.00 5.34
308 311 3.117550 CACCCAAATCCATATCCTCACCA 60.118 47.826 0.00 0.00 0.00 4.17
310 313 2.887152 GCACCCAAATCCATATCCTCAC 59.113 50.000 0.00 0.00 0.00 3.51
311 314 2.487086 CGCACCCAAATCCATATCCTCA 60.487 50.000 0.00 0.00 0.00 3.86
312 315 2.154462 CGCACCCAAATCCATATCCTC 58.846 52.381 0.00 0.00 0.00 3.71
315 318 3.070018 CTCTCGCACCCAAATCCATATC 58.930 50.000 0.00 0.00 0.00 1.63
316 319 2.705658 TCTCTCGCACCCAAATCCATAT 59.294 45.455 0.00 0.00 0.00 1.78
317 320 2.115427 TCTCTCGCACCCAAATCCATA 58.885 47.619 0.00 0.00 0.00 2.74
318 321 0.911769 TCTCTCGCACCCAAATCCAT 59.088 50.000 0.00 0.00 0.00 3.41
319 322 0.690192 TTCTCTCGCACCCAAATCCA 59.310 50.000 0.00 0.00 0.00 3.41
320 323 1.066143 TCTTCTCTCGCACCCAAATCC 60.066 52.381 0.00 0.00 0.00 3.01
321 324 2.386661 TCTTCTCTCGCACCCAAATC 57.613 50.000 0.00 0.00 0.00 2.17
323 326 1.691976 TCTTCTTCTCTCGCACCCAAA 59.308 47.619 0.00 0.00 0.00 3.28
324 327 1.273606 CTCTTCTTCTCTCGCACCCAA 59.726 52.381 0.00 0.00 0.00 4.12
325 328 0.891373 CTCTTCTTCTCTCGCACCCA 59.109 55.000 0.00 0.00 0.00 4.51
327 330 3.186119 CATTCTCTTCTTCTCTCGCACC 58.814 50.000 0.00 0.00 0.00 5.01
328 331 2.602660 GCATTCTCTTCTTCTCTCGCAC 59.397 50.000 0.00 0.00 0.00 5.34
330 333 2.886081 TGCATTCTCTTCTTCTCTCGC 58.114 47.619 0.00 0.00 0.00 5.03
331 334 5.579904 TCATTTGCATTCTCTTCTTCTCTCG 59.420 40.000 0.00 0.00 0.00 4.04
333 336 7.756395 TTTCATTTGCATTCTCTTCTTCTCT 57.244 32.000 0.00 0.00 0.00 3.10
334 337 7.060403 CGTTTTCATTTGCATTCTCTTCTTCTC 59.940 37.037 0.00 0.00 0.00 2.87
335 338 6.860023 CGTTTTCATTTGCATTCTCTTCTTCT 59.140 34.615 0.00 0.00 0.00 2.85
336 339 6.638468 ACGTTTTCATTTGCATTCTCTTCTTC 59.362 34.615 0.00 0.00 0.00 2.87
337 340 6.507023 ACGTTTTCATTTGCATTCTCTTCTT 58.493 32.000 0.00 0.00 0.00 2.52
338 341 6.076981 ACGTTTTCATTTGCATTCTCTTCT 57.923 33.333 0.00 0.00 0.00 2.85
339 342 6.129088 GGAACGTTTTCATTTGCATTCTCTTC 60.129 38.462 0.46 0.00 32.80 2.87
340 343 5.691754 GGAACGTTTTCATTTGCATTCTCTT 59.308 36.000 0.46 0.00 32.80 2.85
341 344 5.222631 GGAACGTTTTCATTTGCATTCTCT 58.777 37.500 0.46 0.00 32.80 3.10
343 346 4.306600 GGGAACGTTTTCATTTGCATTCT 58.693 39.130 0.46 0.00 32.80 2.40
345 348 3.070878 AGGGGAACGTTTTCATTTGCATT 59.929 39.130 0.46 0.00 32.80 3.56
346 349 2.632512 AGGGGAACGTTTTCATTTGCAT 59.367 40.909 0.46 0.00 32.80 3.96
347 350 2.035632 AGGGGAACGTTTTCATTTGCA 58.964 42.857 0.46 0.00 32.80 4.08
348 351 2.812358 AGGGGAACGTTTTCATTTGC 57.188 45.000 0.46 0.00 32.80 3.68
350 353 3.215975 TCGAAGGGGAACGTTTTCATTT 58.784 40.909 0.46 0.00 38.82 2.32
351 354 2.853705 TCGAAGGGGAACGTTTTCATT 58.146 42.857 0.46 1.61 38.82 2.57
354 357 3.072211 AGAATCGAAGGGGAACGTTTTC 58.928 45.455 0.46 0.91 38.82 2.29
355 358 3.072211 GAGAATCGAAGGGGAACGTTTT 58.928 45.455 0.46 0.00 38.82 2.43
356 359 2.696506 GAGAATCGAAGGGGAACGTTT 58.303 47.619 0.46 0.00 38.82 3.60
357 360 2.381725 GAGAATCGAAGGGGAACGTT 57.618 50.000 0.00 0.00 42.01 3.99
370 373 1.944676 CGGCGCCTACACGAGAATC 60.945 63.158 26.68 0.00 34.06 2.52
372 375 4.789075 GCGGCGCCTACACGAGAA 62.789 66.667 26.68 0.00 34.06 2.87
375 378 4.666397 TTTGCGGCGCCTACACGA 62.666 61.111 30.82 5.38 34.06 4.35
377 380 2.125202 AAACTTTGCGGCGCCTACAC 62.125 55.000 30.82 11.78 0.00 2.90
378 381 1.847890 GAAACTTTGCGGCGCCTACA 61.848 55.000 30.82 20.01 0.00 2.74
379 382 1.154282 GAAACTTTGCGGCGCCTAC 60.154 57.895 30.82 17.34 0.00 3.18
381 384 2.594592 AGAAACTTTGCGGCGCCT 60.595 55.556 30.82 14.32 0.00 5.52
382 385 2.126850 GAGAAACTTTGCGGCGCC 60.127 61.111 30.82 19.07 0.00 6.53
383 386 1.154395 GAGAGAAACTTTGCGGCGC 60.154 57.895 27.44 27.44 0.00 6.53
384 387 1.497722 GGAGAGAAACTTTGCGGCG 59.502 57.895 0.51 0.51 0.00 6.46
385 388 0.606673 AGGGAGAGAAACTTTGCGGC 60.607 55.000 0.00 0.00 0.00 6.53
386 389 1.270839 TGAGGGAGAGAAACTTTGCGG 60.271 52.381 0.00 0.00 0.00 5.69
388 391 3.688673 CAGATGAGGGAGAGAAACTTTGC 59.311 47.826 0.00 0.00 0.00 3.68
390 393 3.586618 AGCAGATGAGGGAGAGAAACTTT 59.413 43.478 0.00 0.00 0.00 2.66
391 394 3.180507 AGCAGATGAGGGAGAGAAACTT 58.819 45.455 0.00 0.00 0.00 2.66
392 395 2.765699 GAGCAGATGAGGGAGAGAAACT 59.234 50.000 0.00 0.00 0.00 2.66
393 396 2.765699 AGAGCAGATGAGGGAGAGAAAC 59.234 50.000 0.00 0.00 0.00 2.78
394 397 2.765135 CAGAGCAGATGAGGGAGAGAAA 59.235 50.000 0.00 0.00 0.00 2.52
395 398 2.292126 ACAGAGCAGATGAGGGAGAGAA 60.292 50.000 0.00 0.00 0.00 2.87
396 399 1.287442 ACAGAGCAGATGAGGGAGAGA 59.713 52.381 0.00 0.00 0.00 3.10
398 401 1.272928 ACACAGAGCAGATGAGGGAGA 60.273 52.381 0.00 0.00 0.00 3.71
400 403 1.189752 GACACAGAGCAGATGAGGGA 58.810 55.000 0.00 0.00 0.00 4.20
401 404 0.900421 TGACACAGAGCAGATGAGGG 59.100 55.000 0.00 0.00 0.00 4.30
402 405 2.983907 ATGACACAGAGCAGATGAGG 57.016 50.000 0.00 0.00 0.00 3.86
403 406 3.715495 GGTATGACACAGAGCAGATGAG 58.285 50.000 0.00 0.00 0.00 2.90
404 407 2.099756 CGGTATGACACAGAGCAGATGA 59.900 50.000 0.00 0.00 0.00 2.92
405 408 2.467838 CGGTATGACACAGAGCAGATG 58.532 52.381 0.00 0.00 0.00 2.90
406 409 1.202463 GCGGTATGACACAGAGCAGAT 60.202 52.381 0.00 0.00 0.00 2.90
407 410 0.173481 GCGGTATGACACAGAGCAGA 59.827 55.000 0.00 0.00 0.00 4.26
408 411 0.174389 AGCGGTATGACACAGAGCAG 59.826 55.000 0.00 0.00 0.00 4.24
409 412 1.470051 TAGCGGTATGACACAGAGCA 58.530 50.000 0.00 0.00 0.00 4.26
410 413 2.579207 TTAGCGGTATGACACAGAGC 57.421 50.000 0.00 0.00 0.00 4.09
431 668 4.314121 GAGAGATGACACAGAGCAGTTTT 58.686 43.478 0.00 0.00 0.00 2.43
438 675 3.318839 GGATCAGGAGAGATGACACAGAG 59.681 52.174 0.00 0.00 0.00 3.35
441 678 3.029570 CTGGATCAGGAGAGATGACACA 58.970 50.000 0.00 0.00 0.00 3.72
501 1017 3.114616 CACGCGGAGGTGCTTCAG 61.115 66.667 12.47 0.00 0.00 3.02
516 1032 4.390584 GACGACGACAACGCGCAC 62.391 66.667 5.73 0.00 43.96 5.34
519 1035 3.798776 GACGACGACGACAACGCG 61.799 66.667 15.32 3.53 43.96 6.01
520 1036 1.984351 GATGACGACGACGACAACGC 61.984 60.000 15.32 4.79 45.19 4.84
521 1037 1.708375 CGATGACGACGACGACAACG 61.708 60.000 22.09 22.09 46.87 4.10
522 1038 1.971336 CGATGACGACGACGACAAC 59.029 57.895 15.32 11.78 45.19 3.32
523 1039 1.794785 GCGATGACGACGACGACAA 60.795 57.895 15.32 0.00 45.19 3.18
537 1053 4.740822 GCTGTTGGGGGTGGCGAT 62.741 66.667 0.00 0.00 0.00 4.58
539 1055 4.974721 AAGCTGTTGGGGGTGGCG 62.975 66.667 0.00 0.00 0.00 5.69
540 1056 3.305516 CAAGCTGTTGGGGGTGGC 61.306 66.667 0.00 0.00 0.00 5.01
565 1081 4.657824 ACCCAGCAACGACGACGG 62.658 66.667 12.58 0.00 44.46 4.79
566 1082 3.103911 GACCCAGCAACGACGACG 61.104 66.667 5.58 5.58 45.75 5.12
567 1083 2.737376 GGACCCAGCAACGACGAC 60.737 66.667 0.00 0.00 0.00 4.34
568 1084 2.915659 AGGACCCAGCAACGACGA 60.916 61.111 0.00 0.00 0.00 4.20
569 1085 2.432628 GAGGACCCAGCAACGACG 60.433 66.667 0.00 0.00 0.00 5.12
570 1086 2.047179 GGAGGACCCAGCAACGAC 60.047 66.667 0.00 0.00 34.14 4.34
585 1101 4.414956 ATGACGGGAGCCCAGGGA 62.415 66.667 10.89 0.00 35.37 4.20
586 1102 3.866582 GATGACGGGAGCCCAGGG 61.867 72.222 0.00 0.00 35.37 4.45
587 1103 3.866582 GGATGACGGGAGCCCAGG 61.867 72.222 6.34 0.00 35.37 4.45
588 1104 3.866582 GGGATGACGGGAGCCCAG 61.867 72.222 6.34 1.31 40.39 4.45
607 1123 4.735132 TTCGTTGCCGCTCCGAGG 62.735 66.667 0.00 0.00 31.54 4.63
608 1124 3.181967 CTTCGTTGCCGCTCCGAG 61.182 66.667 5.37 0.00 31.54 4.63
609 1125 4.735132 CCTTCGTTGCCGCTCCGA 62.735 66.667 1.55 1.55 0.00 4.55
610 1126 4.735132 TCCTTCGTTGCCGCTCCG 62.735 66.667 0.00 0.00 0.00 4.63
611 1127 2.815647 CTCCTTCGTTGCCGCTCC 60.816 66.667 0.00 0.00 0.00 4.70
612 1128 3.491652 GCTCCTTCGTTGCCGCTC 61.492 66.667 0.00 0.00 0.00 5.03
613 1129 4.314440 TGCTCCTTCGTTGCCGCT 62.314 61.111 0.00 0.00 0.00 5.52
614 1130 3.793144 CTGCTCCTTCGTTGCCGC 61.793 66.667 0.00 0.00 0.00 6.53
615 1131 3.793144 GCTGCTCCTTCGTTGCCG 61.793 66.667 0.00 0.00 0.00 5.69
616 1132 3.793144 CGCTGCTCCTTCGTTGCC 61.793 66.667 0.00 0.00 0.00 4.52
617 1133 2.734673 CTCGCTGCTCCTTCGTTGC 61.735 63.158 0.00 0.00 0.00 4.17
618 1134 2.097038 CCTCGCTGCTCCTTCGTTG 61.097 63.158 0.00 0.00 0.00 4.10
619 1135 1.816863 TTCCTCGCTGCTCCTTCGTT 61.817 55.000 0.00 0.00 0.00 3.85
620 1136 2.219325 CTTCCTCGCTGCTCCTTCGT 62.219 60.000 0.00 0.00 0.00 3.85
621 1137 1.518133 CTTCCTCGCTGCTCCTTCG 60.518 63.158 0.00 0.00 0.00 3.79
622 1138 1.813337 GCTTCCTCGCTGCTCCTTC 60.813 63.158 0.00 0.00 0.00 3.46
623 1139 2.267324 GCTTCCTCGCTGCTCCTT 59.733 61.111 0.00 0.00 0.00 3.36
624 1140 3.780173 GGCTTCCTCGCTGCTCCT 61.780 66.667 0.00 0.00 0.00 3.69
625 1141 4.847444 GGGCTTCCTCGCTGCTCC 62.847 72.222 0.00 0.00 0.00 4.70
626 1142 2.362329 CTAGGGCTTCCTCGCTGCTC 62.362 65.000 0.00 0.00 41.96 4.26
627 1143 2.364317 TAGGGCTTCCTCGCTGCT 60.364 61.111 0.00 0.00 41.96 4.24
628 1144 2.107953 CTAGGGCTTCCTCGCTGC 59.892 66.667 0.00 0.00 41.96 5.25
629 1145 2.818132 CCTAGGGCTTCCTCGCTG 59.182 66.667 0.00 0.00 41.96 5.18
630 1146 3.157949 GCCTAGGGCTTCCTCGCT 61.158 66.667 11.72 0.00 46.69 4.93
647 1163 1.568612 CTATGCTATTGGCGGCGGTG 61.569 60.000 9.78 0.00 45.43 4.94
648 1164 1.301716 CTATGCTATTGGCGGCGGT 60.302 57.895 9.78 0.00 45.43 5.68
649 1165 2.680913 GCTATGCTATTGGCGGCGG 61.681 63.158 9.78 0.00 45.43 6.13
650 1166 2.680913 GGCTATGCTATTGGCGGCG 61.681 63.158 0.51 0.51 45.43 6.46
651 1167 2.680913 CGGCTATGCTATTGGCGGC 61.681 63.158 0.00 0.00 46.57 6.53
652 1168 3.566261 CGGCTATGCTATTGGCGG 58.434 61.111 14.50 2.46 46.57 6.13
654 1170 2.680913 CGGCGGCTATGCTATTGGC 61.681 63.158 7.61 0.00 42.22 4.52
655 1171 1.291877 GACGGCGGCTATGCTATTGG 61.292 60.000 13.24 0.00 34.52 3.16
656 1172 0.599991 TGACGGCGGCTATGCTATTG 60.600 55.000 16.45 0.00 34.52 1.90
657 1173 0.105964 TTGACGGCGGCTATGCTATT 59.894 50.000 16.45 0.00 34.52 1.73
658 1174 0.600255 GTTGACGGCGGCTATGCTAT 60.600 55.000 16.45 0.00 34.52 2.97
659 1175 1.227147 GTTGACGGCGGCTATGCTA 60.227 57.895 16.45 0.00 34.52 3.49
660 1176 2.511600 GTTGACGGCGGCTATGCT 60.512 61.111 16.45 0.00 34.52 3.79
661 1177 2.813179 CTGTTGACGGCGGCTATGC 61.813 63.158 16.45 1.52 0.00 3.14
662 1178 2.813179 GCTGTTGACGGCGGCTATG 61.813 63.158 16.45 4.97 38.61 2.23
663 1179 2.511600 GCTGTTGACGGCGGCTAT 60.512 61.111 16.45 0.00 38.61 2.97
670 1186 3.726517 CGGCCAAGCTGTTGACGG 61.727 66.667 2.24 0.00 35.46 4.79
671 1187 4.389576 GCGGCCAAGCTGTTGACG 62.390 66.667 2.24 1.52 37.24 4.35
672 1188 4.043200 GGCGGCCAAGCTGTTGAC 62.043 66.667 15.62 0.00 37.24 3.18
698 1214 4.814294 GACGCCGTGGTGCCTAGG 62.814 72.222 3.67 3.67 0.00 3.02
699 1215 4.814294 GGACGCCGTGGTGCCTAG 62.814 72.222 0.00 0.00 0.00 3.02
728 1244 3.423154 GAAAGCGGTGGTGCGAGG 61.423 66.667 0.00 0.00 40.67 4.63
729 1245 2.357517 AGAAAGCGGTGGTGCGAG 60.358 61.111 0.00 0.00 40.67 5.03
730 1246 2.664851 CAGAAAGCGGTGGTGCGA 60.665 61.111 0.00 0.00 40.67 5.10
731 1247 4.389576 GCAGAAAGCGGTGGTGCG 62.390 66.667 0.00 0.00 40.67 5.34
775 1291 4.338539 AGCGTCGACGTGGGTGTC 62.339 66.667 35.48 18.98 42.22 3.67
776 1292 4.640855 CAGCGTCGACGTGGGTGT 62.641 66.667 35.48 13.39 42.22 4.16
784 1300 3.490759 CATGGGTGCAGCGTCGAC 61.491 66.667 10.24 5.18 0.00 4.20
811 1327 3.643978 GCATGAGACGGCATCGGC 61.644 66.667 0.00 0.00 46.68 5.54
812 1328 2.202919 TGCATGAGACGGCATCGG 60.203 61.111 0.00 0.00 41.39 4.18
816 1332 0.816421 CATGGATGCATGAGACGGCA 60.816 55.000 21.61 0.00 45.23 5.69
833 1349 1.063649 CGTAGGTAGCGCGACACAT 59.936 57.895 22.25 12.05 0.00 3.21
834 1350 1.018752 TACGTAGGTAGCGCGACACA 61.019 55.000 22.25 6.17 0.00 3.72
841 1362 0.721154 TGACACGTACGTAGGTAGCG 59.279 55.000 22.34 9.38 32.87 4.26
871 1392 5.145564 TGGTTTTATATAGACGAGGCTCCT 58.854 41.667 9.32 3.61 0.00 3.69
872 1393 5.464030 TGGTTTTATATAGACGAGGCTCC 57.536 43.478 9.32 0.00 0.00 4.70
876 1397 5.607477 TGCCTTGGTTTTATATAGACGAGG 58.393 41.667 0.00 0.00 0.00 4.63
903 1424 0.526662 CGGACTCACAGTCACCTACC 59.473 60.000 6.03 0.00 46.79 3.18
904 1425 1.068472 CACGGACTCACAGTCACCTAC 60.068 57.143 6.03 0.00 46.79 3.18
905 1426 1.202842 TCACGGACTCACAGTCACCTA 60.203 52.381 6.03 0.00 46.79 3.08
967 1488 0.614415 ACCTGCCTCTGTCTCTCCAG 60.614 60.000 0.00 0.00 0.00 3.86
968 1489 0.902048 CACCTGCCTCTGTCTCTCCA 60.902 60.000 0.00 0.00 0.00 3.86
969 1490 0.613292 TCACCTGCCTCTGTCTCTCC 60.613 60.000 0.00 0.00 0.00 3.71
988 1509 3.854666 CACAAACCATCTCTCGATCTGT 58.145 45.455 0.00 0.00 0.00 3.41
1038 1559 2.586357 GCCGCTACTACTGCTGCC 60.586 66.667 0.00 0.00 35.20 4.85
1063 1584 3.790437 CCCCAGCGAGCAGACCAT 61.790 66.667 0.00 0.00 0.00 3.55
1067 1588 3.385384 CAGACCCCAGCGAGCAGA 61.385 66.667 0.00 0.00 0.00 4.26
1130 1651 1.294659 CTGCCTCAACCTCAAGTCGC 61.295 60.000 0.00 0.00 0.00 5.19
1310 1831 3.209410 CAGGCAAGGCAAGGTAGATAAG 58.791 50.000 0.00 0.00 0.00 1.73
1311 1832 2.683742 GCAGGCAAGGCAAGGTAGATAA 60.684 50.000 0.00 0.00 0.00 1.75
1312 1833 1.134098 GCAGGCAAGGCAAGGTAGATA 60.134 52.381 0.00 0.00 0.00 1.98
1313 1834 0.394899 GCAGGCAAGGCAAGGTAGAT 60.395 55.000 0.00 0.00 0.00 1.98
1314 1835 1.002134 GCAGGCAAGGCAAGGTAGA 60.002 57.895 0.00 0.00 0.00 2.59
1383 1909 3.857854 GCATGACGCAGGCACGAG 61.858 66.667 10.73 0.00 41.05 4.18
1384 1910 4.678499 TGCATGACGCAGGCACGA 62.678 61.111 13.60 0.00 46.09 4.35
1470 2026 3.936203 AGCGTGAGGTTTGGCGGA 61.936 61.111 0.00 0.00 40.01 5.54
1854 2677 1.144936 GAGGAAGTCCGGGCTCATG 59.855 63.158 10.20 0.00 42.08 3.07
2195 3027 4.699522 GCACCAGGGACGACCACC 62.700 72.222 6.20 0.00 43.89 4.61
2242 3074 8.998277 AGCATTAGAATCTAACTAGTGGAGTA 57.002 34.615 4.66 0.00 37.44 2.59
2243 3075 7.906199 AGCATTAGAATCTAACTAGTGGAGT 57.094 36.000 4.66 0.00 41.56 3.85
2245 3077 9.642343 TTCTAGCATTAGAATCTAACTAGTGGA 57.358 33.333 18.89 0.00 40.20 4.02
2246 3078 9.685828 GTTCTAGCATTAGAATCTAACTAGTGG 57.314 37.037 18.89 0.00 45.15 4.00
2248 3080 8.862085 GGGTTCTAGCATTAGAATCTAACTAGT 58.138 37.037 18.89 0.00 45.15 2.57
2249 3081 8.024285 CGGGTTCTAGCATTAGAATCTAACTAG 58.976 40.741 15.84 15.84 45.15 2.57
2250 3082 7.722728 TCGGGTTCTAGCATTAGAATCTAACTA 59.277 37.037 4.66 3.01 45.15 2.24
2251 3083 6.550108 TCGGGTTCTAGCATTAGAATCTAACT 59.450 38.462 4.66 1.95 45.15 2.24
2252 3084 6.746120 TCGGGTTCTAGCATTAGAATCTAAC 58.254 40.000 4.66 0.00 45.15 2.34
2254 3086 6.304624 TCTCGGGTTCTAGCATTAGAATCTA 58.695 40.000 6.09 0.00 45.15 1.98
2256 3088 5.241949 TCTCTCGGGTTCTAGCATTAGAATC 59.758 44.000 0.00 0.00 45.15 2.52
2257 3089 5.141182 TCTCTCGGGTTCTAGCATTAGAAT 58.859 41.667 0.00 0.00 45.15 2.40
2260 3092 3.886505 ACTCTCTCGGGTTCTAGCATTAG 59.113 47.826 0.00 0.00 0.00 1.73
2261 3093 3.899726 ACTCTCTCGGGTTCTAGCATTA 58.100 45.455 0.00 0.00 0.00 1.90
2263 3095 2.445682 ACTCTCTCGGGTTCTAGCAT 57.554 50.000 0.00 0.00 0.00 3.79
2264 3096 2.920524 CTACTCTCTCGGGTTCTAGCA 58.079 52.381 0.00 0.00 0.00 3.49
2265 3097 1.605232 GCTACTCTCTCGGGTTCTAGC 59.395 57.143 0.00 0.00 0.00 3.42
2267 3099 2.239150 ACAGCTACTCTCTCGGGTTCTA 59.761 50.000 0.00 0.00 0.00 2.10
2272 3104 3.632604 TGATTAACAGCTACTCTCTCGGG 59.367 47.826 0.00 0.00 0.00 5.14
2273 3105 4.902443 TGATTAACAGCTACTCTCTCGG 57.098 45.455 0.00 0.00 0.00 4.63
2274 3106 5.826586 ACATGATTAACAGCTACTCTCTCG 58.173 41.667 0.00 0.00 0.00 4.04
2276 3108 5.590663 TCGACATGATTAACAGCTACTCTCT 59.409 40.000 0.00 0.00 0.00 3.10
2277 3109 5.822278 TCGACATGATTAACAGCTACTCTC 58.178 41.667 0.00 0.00 0.00 3.20
2310 3164 2.231478 TGCCTTGCTCACTACTCACTAC 59.769 50.000 0.00 0.00 0.00 2.73
2311 3165 2.525368 TGCCTTGCTCACTACTCACTA 58.475 47.619 0.00 0.00 0.00 2.74
2312 3166 1.342074 TGCCTTGCTCACTACTCACT 58.658 50.000 0.00 0.00 0.00 3.41
2313 3167 2.072298 CTTGCCTTGCTCACTACTCAC 58.928 52.381 0.00 0.00 0.00 3.51
2314 3168 1.002430 CCTTGCCTTGCTCACTACTCA 59.998 52.381 0.00 0.00 0.00 3.41
2315 3169 1.731720 CCTTGCCTTGCTCACTACTC 58.268 55.000 0.00 0.00 0.00 2.59
2525 7150 9.836076 GTGTTTCAACTAAGTTTGTTAAGAGTT 57.164 29.630 2.32 0.00 0.00 3.01
2526 7151 9.227777 AGTGTTTCAACTAAGTTTGTTAAGAGT 57.772 29.630 2.32 0.00 0.00 3.24
2527 7152 9.704098 GAGTGTTTCAACTAAGTTTGTTAAGAG 57.296 33.333 2.32 0.00 0.00 2.85
2528 7153 8.671028 GGAGTGTTTCAACTAAGTTTGTTAAGA 58.329 33.333 2.32 0.00 0.00 2.10
2543 7168 4.460731 TGAACAATGTGTGGAGTGTTTCAA 59.539 37.500 0.00 0.00 34.44 2.69
2597 7223 5.462398 CAGAAACTACGGGTATTCTATGTGC 59.538 44.000 0.00 0.00 31.25 4.57
2602 7228 5.759059 TCTCCAGAAACTACGGGTATTCTA 58.241 41.667 0.00 0.00 31.25 2.10
2619 7245 3.080319 CCTTTTTCTTCTGCCTCTCCAG 58.920 50.000 0.00 0.00 0.00 3.86
2620 7246 2.815589 GCCTTTTTCTTCTGCCTCTCCA 60.816 50.000 0.00 0.00 0.00 3.86
2621 7247 1.815613 GCCTTTTTCTTCTGCCTCTCC 59.184 52.381 0.00 0.00 0.00 3.71
2623 7249 2.967745 AGCCTTTTTCTTCTGCCTCT 57.032 45.000 0.00 0.00 0.00 3.69
2624 7250 2.421775 GCTAGCCTTTTTCTTCTGCCTC 59.578 50.000 2.29 0.00 0.00 4.70
2625 7251 2.441410 GCTAGCCTTTTTCTTCTGCCT 58.559 47.619 2.29 0.00 0.00 4.75
2626 7252 1.131315 CGCTAGCCTTTTTCTTCTGCC 59.869 52.381 9.66 0.00 0.00 4.85
2826 7471 1.266175 TGAGAACCGAAGTCAGTCGAC 59.734 52.381 7.70 7.70 43.86 4.20
2827 7472 1.601166 TGAGAACCGAAGTCAGTCGA 58.399 50.000 0.00 0.00 43.86 4.20
2828 7473 2.254459 CATGAGAACCGAAGTCAGTCG 58.746 52.381 0.00 0.00 40.77 4.18
2829 7474 2.611518 CCATGAGAACCGAAGTCAGTC 58.388 52.381 0.00 0.00 0.00 3.51
2830 7475 1.276421 CCCATGAGAACCGAAGTCAGT 59.724 52.381 0.00 0.00 0.00 3.41
2831 7476 1.550524 TCCCATGAGAACCGAAGTCAG 59.449 52.381 0.00 0.00 0.00 3.51
2832 7477 1.639722 TCCCATGAGAACCGAAGTCA 58.360 50.000 0.00 0.00 0.00 3.41
2863 7508 4.670221 GCTTACATGAGCTGTTTGTACTGC 60.670 45.833 0.00 0.37 46.20 4.40
2879 7524 5.134202 TCGTGATTATCCGATGCTTACAT 57.866 39.130 2.58 0.00 39.98 2.29
2918 7563 7.439381 CATCTTAGAATGGCCATTAAGCAATT 58.561 34.615 30.73 7.38 39.16 2.32
2937 7582 0.894835 TCCAGCGTCTGTGCATCTTA 59.105 50.000 0.00 0.00 37.31 2.10
2939 7584 0.251354 ATTCCAGCGTCTGTGCATCT 59.749 50.000 0.00 0.00 37.31 2.90
2940 7585 0.654683 GATTCCAGCGTCTGTGCATC 59.345 55.000 0.00 2.05 37.31 3.91
2942 7587 1.737735 CGATTCCAGCGTCTGTGCA 60.738 57.895 6.19 0.00 37.31 4.57
2943 7588 1.446099 TCGATTCCAGCGTCTGTGC 60.446 57.895 6.19 0.00 0.00 4.57
2944 7589 0.388520 TGTCGATTCCAGCGTCTGTG 60.389 55.000 0.00 0.00 0.00 3.66
2950 7603 0.572590 GACGATTGTCGATTCCAGCG 59.427 55.000 6.34 0.00 43.74 5.18
2960 7613 0.999406 CATCACCGTGGACGATTGTC 59.001 55.000 4.31 4.31 44.72 3.18
3034 7695 7.201705 GCTGAGGTTTACTTCAAGTTAACTGTT 60.202 37.037 16.80 5.65 37.73 3.16
3042 7703 2.143925 GCGCTGAGGTTTACTTCAAGT 58.856 47.619 0.00 0.00 31.40 3.16
3045 7706 2.543777 AAGCGCTGAGGTTTACTTCA 57.456 45.000 12.58 0.00 37.23 3.02
3055 7716 5.858049 TCAAATTGAAATGTTAAGCGCTGAG 59.142 36.000 12.58 0.00 0.00 3.35
3131 7792 8.770828 CGACTAAGATTTTGTTTTGGAACTAGA 58.229 33.333 0.00 0.00 36.70 2.43
3132 7793 7.534239 GCGACTAAGATTTTGTTTTGGAACTAG 59.466 37.037 0.00 0.00 36.70 2.57
3133 7794 7.227910 AGCGACTAAGATTTTGTTTTGGAACTA 59.772 33.333 0.00 0.00 36.70 2.24
3134 7795 6.039382 AGCGACTAAGATTTTGTTTTGGAACT 59.961 34.615 0.00 0.00 36.70 3.01
3135 7796 6.206498 AGCGACTAAGATTTTGTTTTGGAAC 58.794 36.000 0.00 0.00 36.29 3.62
3136 7797 6.038825 TGAGCGACTAAGATTTTGTTTTGGAA 59.961 34.615 0.00 0.00 0.00 3.53
3137 7798 5.529430 TGAGCGACTAAGATTTTGTTTTGGA 59.471 36.000 0.00 0.00 0.00 3.53
3138 7799 5.757886 TGAGCGACTAAGATTTTGTTTTGG 58.242 37.500 0.00 0.00 0.00 3.28
3139 7800 7.643764 TCTTTGAGCGACTAAGATTTTGTTTTG 59.356 33.333 6.71 0.00 35.98 2.44
3140 7801 7.703328 TCTTTGAGCGACTAAGATTTTGTTTT 58.297 30.769 6.71 0.00 35.98 2.43
3141 7802 7.259290 TCTTTGAGCGACTAAGATTTTGTTT 57.741 32.000 6.71 0.00 35.98 2.83
3142 7803 6.861065 TCTTTGAGCGACTAAGATTTTGTT 57.139 33.333 6.71 0.00 35.98 2.83
3143 7804 6.861065 TTCTTTGAGCGACTAAGATTTTGT 57.139 33.333 10.16 0.00 39.29 2.83
3160 7834 9.199982 AGATGCATCTTTTGTGTAAATTCTTTG 57.800 29.630 23.75 0.00 31.97 2.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.