Multiple sequence alignment - TraesCS3D01G515900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G515900 chr3D 100.000 3544 0 0 855 4398 599198464 599194921 0.000000e+00 6545
1 TraesCS3D01G515900 chr3D 91.436 1950 132 18 2159 4082 599264506 599266446 0.000000e+00 2643
2 TraesCS3D01G515900 chr3D 100.000 519 0 0 1 519 599199318 599198800 0.000000e+00 959
3 TraesCS3D01G515900 chr3D 84.291 592 41 24 871 1436 599263476 599264041 8.380000e-147 531
4 TraesCS3D01G515900 chr3D 92.857 196 11 3 160 354 470481063 470481256 9.310000e-72 281
5 TraesCS3D01G515900 chr3D 80.569 211 20 12 1654 1861 599264035 599264227 4.590000e-30 143
6 TraesCS3D01G515900 chr3D 84.733 131 4 11 387 517 599263218 599263332 2.780000e-22 117
7 TraesCS3D01G515900 chr3A 94.364 3123 117 22 1319 4398 729408364 729405258 0.000000e+00 4737
8 TraesCS3D01G515900 chr3A 91.761 1942 135 16 2159 4082 729312339 729314273 0.000000e+00 2676
9 TraesCS3D01G515900 chr3A 93.886 458 13 4 855 1303 729421470 729421019 0.000000e+00 676
10 TraesCS3D01G515900 chr3A 80.499 641 46 39 855 1436 729311291 729311911 6.800000e-113 418
11 TraesCS3D01G515900 chr3A 83.152 368 26 14 1654 2003 729311905 729312254 1.990000e-78 303
12 TraesCS3D01G515900 chr3A 92.818 181 13 0 4 184 729429685 729429505 3.370000e-66 263
13 TraesCS3D01G515900 chr3A 96.000 75 3 0 386 460 729310791 729310865 5.970000e-24 122
14 TraesCS3D01G515900 chr3A 93.506 77 2 3 385 459 729421660 729421585 1.290000e-20 111
15 TraesCS3D01G515900 chr3B 92.393 631 43 4 2300 2927 807175770 807176398 0.000000e+00 894
16 TraesCS3D01G515900 chr5A 96.319 163 6 0 185 347 129234092 129233930 7.250000e-68 268
17 TraesCS3D01G515900 chr2D 95.625 160 6 1 193 352 287142346 287142504 5.640000e-64 255
18 TraesCS3D01G515900 chr6B 92.090 177 14 0 181 357 716993118 716992942 2.630000e-62 250
19 TraesCS3D01G515900 chr6B 85.470 117 13 4 3983 4097 706026383 706026497 7.730000e-23 119
20 TraesCS3D01G515900 chr6B 83.761 117 15 4 3983 4097 706231533 706231647 1.670000e-19 108
21 TraesCS3D01G515900 chr1A 93.413 167 11 0 188 354 505305397 505305563 9.450000e-62 248
22 TraesCS3D01G515900 chr1A 92.090 177 13 1 182 357 505308276 505308100 9.450000e-62 248
23 TraesCS3D01G515900 chr5D 91.954 174 14 0 184 357 342607554 342607381 1.220000e-60 244
24 TraesCS3D01G515900 chr5D 91.908 173 14 0 182 354 342605386 342605558 4.390000e-60 243
25 TraesCS3D01G515900 chr4D 91.908 173 14 0 185 357 374099721 374099549 4.390000e-60 243
26 TraesCS3D01G515900 chr7B 92.763 152 8 3 1854 2003 38466994 38466844 2.660000e-52 217
27 TraesCS3D01G515900 chr7B 80.456 307 20 12 1148 1436 38467482 38467198 9.650000e-47 198


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G515900 chr3D 599194921 599199318 4397 True 3752.00 6545 100.00000 1 4398 2 chr3D.!!$R1 4397
1 TraesCS3D01G515900 chr3D 599263218 599266446 3228 False 858.50 2643 85.25725 387 4082 4 chr3D.!!$F2 3695
2 TraesCS3D01G515900 chr3A 729405258 729408364 3106 True 4737.00 4737 94.36400 1319 4398 1 chr3A.!!$R1 3079
3 TraesCS3D01G515900 chr3A 729310791 729314273 3482 False 879.75 2676 87.85300 386 4082 4 chr3A.!!$F1 3696
4 TraesCS3D01G515900 chr3A 729421019 729421660 641 True 393.50 676 93.69600 385 1303 2 chr3A.!!$R3 918
5 TraesCS3D01G515900 chr3B 807175770 807176398 628 False 894.00 894 92.39300 2300 2927 1 chr3B.!!$F1 627
6 TraesCS3D01G515900 chr7B 38466844 38467482 638 True 207.50 217 86.60950 1148 2003 2 chr7B.!!$R1 855

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
311 312 0.031917 TTAGTCCCCGGCCTATCACA 60.032 55.0 0.00 0.0 0.00 3.58 F
350 351 0.108585 GGTGGCTTGACTGGTCTTCA 59.891 55.0 2.38 0.0 0.00 3.02 F
360 361 0.254178 CTGGTCTTCATCCCCAGGTG 59.746 60.0 0.00 0.0 41.69 4.00 F
1468 1997 0.257039 GTGCTTCTCCACCATGGGAT 59.743 55.0 18.09 0.0 38.32 3.85 F
3122 3778 0.252421 TGGAGACTGGAGCATGGACT 60.252 55.0 0.00 0.0 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1791 2330 0.508641 CTGTCGAAACTGAACCAGCG 59.491 55.0 0.00 0.0 34.37 5.18 R
1792 2331 1.583054 ACTGTCGAAACTGAACCAGC 58.417 50.0 0.00 0.0 34.37 4.85 R
2357 3012 1.371467 TCCAAATCCTCTGCTCCCAA 58.629 50.0 0.00 0.0 0.00 4.12 R
3260 3916 0.392706 ATATCCTCCACGCGCATCAA 59.607 50.0 5.73 0.0 0.00 2.57 R
4288 4962 1.247567 AAATGGACCAAGGAAGTGCG 58.752 50.0 0.00 0.0 0.00 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 3.772387 AGGATCTATCAGATTCTGGCGA 58.228 45.455 13.59 8.07 39.10 5.54
43 44 4.352009 AGGATCTATCAGATTCTGGCGAT 58.648 43.478 13.59 11.92 39.10 4.58
44 45 4.160065 AGGATCTATCAGATTCTGGCGATG 59.840 45.833 13.59 1.35 39.10 3.84
45 46 4.159321 GGATCTATCAGATTCTGGCGATGA 59.841 45.833 13.59 6.15 34.53 2.92
46 47 5.163426 GGATCTATCAGATTCTGGCGATGAT 60.163 44.000 13.59 9.97 34.53 2.45
47 48 6.040278 GGATCTATCAGATTCTGGCGATGATA 59.960 42.308 13.59 2.99 34.53 2.15
48 49 6.448207 TCTATCAGATTCTGGCGATGATAG 57.552 41.667 13.59 11.52 45.78 2.08
49 50 3.949842 TCAGATTCTGGCGATGATAGG 57.050 47.619 13.59 0.00 31.51 2.57
50 51 2.028658 TCAGATTCTGGCGATGATAGGC 60.029 50.000 13.59 0.00 31.51 3.93
51 52 1.067283 AGATTCTGGCGATGATAGGCG 60.067 52.381 0.00 0.00 36.92 5.52
58 59 4.664677 GATGATAGGCGCCCGCGT 62.665 66.667 26.15 14.37 43.06 6.01
59 60 4.664677 ATGATAGGCGCCCGCGTC 62.665 66.667 26.15 16.45 45.28 5.19
74 75 2.357034 GTCTCAGCCGACGCCAAA 60.357 61.111 0.00 0.00 34.57 3.28
75 76 1.959226 GTCTCAGCCGACGCCAAAA 60.959 57.895 0.00 0.00 34.57 2.44
76 77 1.667830 TCTCAGCCGACGCCAAAAG 60.668 57.895 0.00 0.00 34.57 2.27
77 78 3.314388 CTCAGCCGACGCCAAAAGC 62.314 63.158 0.00 0.00 34.57 3.51
87 88 3.145228 GCCAAAAGCGCTCTAGAGT 57.855 52.632 20.75 0.00 0.00 3.24
88 89 1.443802 GCCAAAAGCGCTCTAGAGTT 58.556 50.000 20.75 4.99 0.00 3.01
89 90 1.129437 GCCAAAAGCGCTCTAGAGTTG 59.871 52.381 20.75 15.45 0.00 3.16
90 91 2.688507 CCAAAAGCGCTCTAGAGTTGA 58.311 47.619 20.75 0.00 0.00 3.18
91 92 2.413453 CCAAAAGCGCTCTAGAGTTGAC 59.587 50.000 20.75 8.22 0.00 3.18
92 93 3.059884 CAAAAGCGCTCTAGAGTTGACA 58.940 45.455 20.75 0.00 0.00 3.58
93 94 3.386768 AAAGCGCTCTAGAGTTGACAA 57.613 42.857 20.75 0.00 0.00 3.18
94 95 2.645730 AGCGCTCTAGAGTTGACAAG 57.354 50.000 20.75 5.68 0.00 3.16
95 96 1.203523 AGCGCTCTAGAGTTGACAAGG 59.796 52.381 20.75 2.58 0.00 3.61
96 97 1.634702 CGCTCTAGAGTTGACAAGGC 58.365 55.000 20.75 3.32 0.00 4.35
97 98 1.067565 CGCTCTAGAGTTGACAAGGCA 60.068 52.381 20.75 0.00 0.00 4.75
98 99 2.615869 GCTCTAGAGTTGACAAGGCAG 58.384 52.381 20.75 0.00 0.00 4.85
99 100 2.028567 GCTCTAGAGTTGACAAGGCAGT 60.029 50.000 20.75 0.00 0.00 4.40
100 101 3.843999 CTCTAGAGTTGACAAGGCAGTC 58.156 50.000 11.89 3.48 38.99 3.51
101 102 2.229062 TCTAGAGTTGACAAGGCAGTCG 59.771 50.000 5.78 0.00 41.41 4.18
102 103 1.040646 AGAGTTGACAAGGCAGTCGA 58.959 50.000 5.78 1.47 41.41 4.20
103 104 1.620819 AGAGTTGACAAGGCAGTCGAT 59.379 47.619 3.77 0.00 41.41 3.59
104 105 1.996191 GAGTTGACAAGGCAGTCGATC 59.004 52.381 3.77 0.00 41.41 3.69
105 106 1.344438 AGTTGACAAGGCAGTCGATCA 59.656 47.619 3.77 0.00 41.41 2.92
106 107 1.728971 GTTGACAAGGCAGTCGATCAG 59.271 52.381 3.77 0.00 41.41 2.90
107 108 0.390340 TGACAAGGCAGTCGATCAGC 60.390 55.000 5.78 0.00 41.41 4.26
111 112 2.184322 GGCAGTCGATCAGCCGAA 59.816 61.111 9.49 0.00 38.86 4.30
112 113 1.447838 GGCAGTCGATCAGCCGAAA 60.448 57.895 9.49 0.00 38.86 3.46
113 114 1.696832 GGCAGTCGATCAGCCGAAAC 61.697 60.000 9.49 0.00 38.86 2.78
114 115 1.991430 CAGTCGATCAGCCGAAACG 59.009 57.895 0.00 0.00 40.51 3.60
115 116 0.732880 CAGTCGATCAGCCGAAACGT 60.733 55.000 0.00 0.00 40.51 3.99
116 117 0.806868 AGTCGATCAGCCGAAACGTA 59.193 50.000 0.00 0.00 40.51 3.57
117 118 1.200716 AGTCGATCAGCCGAAACGTAA 59.799 47.619 0.00 0.00 40.51 3.18
118 119 1.582502 GTCGATCAGCCGAAACGTAAG 59.417 52.381 0.00 0.00 40.51 2.34
119 120 1.469703 TCGATCAGCCGAAACGTAAGA 59.530 47.619 0.00 0.00 36.75 2.10
120 121 2.095110 TCGATCAGCCGAAACGTAAGAA 60.095 45.455 0.00 0.00 36.75 2.52
121 122 2.279136 CGATCAGCCGAAACGTAAGAAG 59.721 50.000 0.00 0.00 43.62 2.85
122 123 3.508762 GATCAGCCGAAACGTAAGAAGA 58.491 45.455 0.00 0.00 43.62 2.87
123 124 3.374220 TCAGCCGAAACGTAAGAAGAA 57.626 42.857 0.00 0.00 43.62 2.52
124 125 3.314553 TCAGCCGAAACGTAAGAAGAAG 58.685 45.455 0.00 0.00 43.62 2.85
125 126 3.005050 TCAGCCGAAACGTAAGAAGAAGA 59.995 43.478 0.00 0.00 43.62 2.87
126 127 3.739300 CAGCCGAAACGTAAGAAGAAGAA 59.261 43.478 0.00 0.00 43.62 2.52
127 128 3.988517 AGCCGAAACGTAAGAAGAAGAAG 59.011 43.478 0.00 0.00 43.62 2.85
128 129 3.423253 GCCGAAACGTAAGAAGAAGAAGC 60.423 47.826 0.00 0.00 43.62 3.86
129 130 3.123116 CCGAAACGTAAGAAGAAGAAGCC 59.877 47.826 0.00 0.00 43.62 4.35
130 131 3.181543 CGAAACGTAAGAAGAAGAAGCCG 60.182 47.826 0.00 0.00 43.62 5.52
131 132 2.365408 ACGTAAGAAGAAGAAGCCGG 57.635 50.000 0.00 0.00 43.62 6.13
132 133 1.067071 ACGTAAGAAGAAGAAGCCGGG 60.067 52.381 2.18 0.00 43.62 5.73
133 134 1.370609 GTAAGAAGAAGAAGCCGGGC 58.629 55.000 12.11 12.11 0.00 6.13
134 135 0.981183 TAAGAAGAAGAAGCCGGGCA 59.019 50.000 23.09 0.00 0.00 5.36
135 136 0.110486 AAGAAGAAGAAGCCGGGCAA 59.890 50.000 23.09 0.00 0.00 4.52
136 137 0.322008 AGAAGAAGAAGCCGGGCAAG 60.322 55.000 23.09 0.00 0.00 4.01
137 138 1.303643 AAGAAGAAGCCGGGCAAGG 60.304 57.895 23.09 0.00 0.00 3.61
138 139 2.751837 GAAGAAGCCGGGCAAGGG 60.752 66.667 23.09 0.00 0.00 3.95
139 140 3.256960 AAGAAGCCGGGCAAGGGA 61.257 61.111 23.09 0.00 0.00 4.20
140 141 3.569200 AAGAAGCCGGGCAAGGGAC 62.569 63.158 23.09 5.49 0.00 4.46
148 149 3.171348 GGCAAGGGACCCAAGTCT 58.829 61.111 14.60 0.00 43.05 3.24
149 150 1.303643 GGCAAGGGACCCAAGTCTG 60.304 63.158 14.60 2.85 43.05 3.51
150 151 1.973812 GCAAGGGACCCAAGTCTGC 60.974 63.158 14.60 9.36 43.05 4.26
151 152 1.455849 CAAGGGACCCAAGTCTGCA 59.544 57.895 14.60 0.00 43.05 4.41
152 153 0.890996 CAAGGGACCCAAGTCTGCAC 60.891 60.000 14.60 0.00 43.05 4.57
153 154 1.062488 AAGGGACCCAAGTCTGCACT 61.062 55.000 14.60 0.00 43.05 4.40
154 155 1.302832 GGGACCCAAGTCTGCACTG 60.303 63.158 5.33 0.00 43.05 3.66
155 156 1.302832 GGACCCAAGTCTGCACTGG 60.303 63.158 0.00 0.00 43.05 4.00
156 157 1.754745 GACCCAAGTCTGCACTGGA 59.245 57.895 1.78 0.00 40.10 3.86
157 158 0.326264 GACCCAAGTCTGCACTGGAT 59.674 55.000 1.78 0.00 40.10 3.41
158 159 0.037303 ACCCAAGTCTGCACTGGATG 59.963 55.000 1.78 0.00 31.06 3.51
173 174 6.057627 CACTGGATGCAATCTTAGATGAAC 57.942 41.667 0.00 0.00 44.71 3.18
174 175 5.008415 CACTGGATGCAATCTTAGATGAACC 59.992 44.000 0.00 0.00 44.71 3.62
175 176 5.114764 TGGATGCAATCTTAGATGAACCA 57.885 39.130 0.00 0.00 44.71 3.67
176 177 5.698104 TGGATGCAATCTTAGATGAACCAT 58.302 37.500 0.00 0.00 44.71 3.55
177 178 5.533528 TGGATGCAATCTTAGATGAACCATG 59.466 40.000 0.00 0.00 44.71 3.66
178 179 5.533903 GGATGCAATCTTAGATGAACCATGT 59.466 40.000 0.00 0.00 44.71 3.21
179 180 5.823209 TGCAATCTTAGATGAACCATGTG 57.177 39.130 0.00 0.00 0.00 3.21
180 181 4.096833 TGCAATCTTAGATGAACCATGTGC 59.903 41.667 0.00 0.00 0.00 4.57
181 182 4.096833 GCAATCTTAGATGAACCATGTGCA 59.903 41.667 0.00 0.00 0.00 4.57
182 183 5.393352 GCAATCTTAGATGAACCATGTGCAA 60.393 40.000 0.00 0.00 0.00 4.08
183 184 6.682113 GCAATCTTAGATGAACCATGTGCAAT 60.682 38.462 0.00 0.00 0.00 3.56
184 185 5.823209 TCTTAGATGAACCATGTGCAATG 57.177 39.130 0.00 0.00 0.00 2.82
185 186 5.499313 TCTTAGATGAACCATGTGCAATGA 58.501 37.500 9.56 0.00 0.00 2.57
186 187 5.587443 TCTTAGATGAACCATGTGCAATGAG 59.413 40.000 9.56 4.20 0.00 2.90
187 188 3.021695 AGATGAACCATGTGCAATGAGG 58.978 45.455 9.56 2.98 0.00 3.86
188 189 2.291209 TGAACCATGTGCAATGAGGT 57.709 45.000 9.56 3.55 0.00 3.85
189 190 3.431673 TGAACCATGTGCAATGAGGTA 57.568 42.857 9.56 0.00 31.10 3.08
190 191 3.760738 TGAACCATGTGCAATGAGGTAA 58.239 40.909 9.56 0.00 31.10 2.85
191 192 4.343231 TGAACCATGTGCAATGAGGTAAT 58.657 39.130 9.56 0.00 31.10 1.89
192 193 5.504853 TGAACCATGTGCAATGAGGTAATA 58.495 37.500 9.56 0.00 31.10 0.98
193 194 5.589855 TGAACCATGTGCAATGAGGTAATAG 59.410 40.000 9.56 0.00 31.10 1.73
194 195 3.885297 ACCATGTGCAATGAGGTAATAGC 59.115 43.478 9.56 0.00 0.00 2.97
195 196 3.884693 CCATGTGCAATGAGGTAATAGCA 59.115 43.478 9.56 0.00 0.00 3.49
197 198 3.971032 GTGCAATGAGGTAATAGCACC 57.029 47.619 0.00 0.00 44.68 5.01
198 199 2.618709 GTGCAATGAGGTAATAGCACCC 59.381 50.000 0.00 0.00 44.68 4.61
199 200 2.230660 GCAATGAGGTAATAGCACCCC 58.769 52.381 0.00 0.00 39.62 4.95
200 201 2.422803 GCAATGAGGTAATAGCACCCCA 60.423 50.000 0.00 0.00 39.62 4.96
201 202 3.480470 CAATGAGGTAATAGCACCCCAG 58.520 50.000 0.00 0.00 39.62 4.45
202 203 1.507140 TGAGGTAATAGCACCCCAGG 58.493 55.000 0.00 0.00 39.62 4.45
203 204 1.274184 TGAGGTAATAGCACCCCAGGT 60.274 52.381 0.00 0.00 39.62 4.00
204 205 2.022820 TGAGGTAATAGCACCCCAGGTA 60.023 50.000 0.00 0.00 39.62 3.08
205 206 2.367894 GAGGTAATAGCACCCCAGGTAC 59.632 54.545 0.00 0.00 39.62 3.34
206 207 1.419012 GGTAATAGCACCCCAGGTACC 59.581 57.143 2.73 2.73 32.11 3.34
207 208 1.419012 GTAATAGCACCCCAGGTACCC 59.581 57.143 8.74 0.00 32.11 3.69
208 209 0.991893 AATAGCACCCCAGGTACCCC 60.992 60.000 8.74 0.00 32.11 4.95
209 210 2.203095 ATAGCACCCCAGGTACCCCA 62.203 60.000 8.74 0.00 32.11 4.96
210 211 2.418963 TAGCACCCCAGGTACCCCAA 62.419 60.000 8.74 0.00 32.11 4.12
211 212 2.761160 CACCCCAGGTACCCCAAC 59.239 66.667 8.74 0.00 32.11 3.77
212 213 1.850755 CACCCCAGGTACCCCAACT 60.851 63.158 8.74 0.00 32.11 3.16
213 214 1.072459 ACCCCAGGTACCCCAACTT 60.072 57.895 8.74 0.00 32.11 2.66
214 215 1.382629 CCCCAGGTACCCCAACTTG 59.617 63.158 8.74 0.00 0.00 3.16
215 216 1.304134 CCCAGGTACCCCAACTTGC 60.304 63.158 8.74 0.00 0.00 4.01
216 217 1.458486 CCAGGTACCCCAACTTGCA 59.542 57.895 8.74 0.00 0.00 4.08
217 218 0.039618 CCAGGTACCCCAACTTGCAT 59.960 55.000 8.74 0.00 0.00 3.96
218 219 1.283613 CCAGGTACCCCAACTTGCATA 59.716 52.381 8.74 0.00 0.00 3.14
219 220 2.643551 CAGGTACCCCAACTTGCATAG 58.356 52.381 8.74 0.00 0.00 2.23
220 221 2.238646 CAGGTACCCCAACTTGCATAGA 59.761 50.000 8.74 0.00 0.00 1.98
221 222 2.916934 AGGTACCCCAACTTGCATAGAA 59.083 45.455 8.74 0.00 0.00 2.10
222 223 3.527665 AGGTACCCCAACTTGCATAGAAT 59.472 43.478 8.74 0.00 0.00 2.40
223 224 3.632145 GGTACCCCAACTTGCATAGAATG 59.368 47.826 0.00 0.00 0.00 2.67
224 225 3.456380 ACCCCAACTTGCATAGAATGT 57.544 42.857 0.00 0.00 0.00 2.71
225 226 3.091545 ACCCCAACTTGCATAGAATGTG 58.908 45.455 0.00 0.00 0.00 3.21
226 227 3.245229 ACCCCAACTTGCATAGAATGTGA 60.245 43.478 0.00 0.00 0.00 3.58
227 228 3.129287 CCCCAACTTGCATAGAATGTGAC 59.871 47.826 0.00 0.00 0.00 3.67
228 229 3.181507 CCCAACTTGCATAGAATGTGACG 60.182 47.826 0.00 0.00 0.00 4.35
229 230 3.684305 CCAACTTGCATAGAATGTGACGA 59.316 43.478 0.00 0.00 0.00 4.20
230 231 4.333649 CCAACTTGCATAGAATGTGACGAT 59.666 41.667 0.00 0.00 0.00 3.73
231 232 5.163723 CCAACTTGCATAGAATGTGACGATT 60.164 40.000 0.00 0.00 0.00 3.34
232 233 6.317088 CAACTTGCATAGAATGTGACGATTT 58.683 36.000 0.00 0.00 0.00 2.17
233 234 7.413988 CCAACTTGCATAGAATGTGACGATTTA 60.414 37.037 0.00 0.00 0.00 1.40
234 235 7.239166 ACTTGCATAGAATGTGACGATTTAG 57.761 36.000 0.00 0.00 0.00 1.85
235 236 6.818644 ACTTGCATAGAATGTGACGATTTAGT 59.181 34.615 0.00 0.00 0.00 2.24
236 237 6.828502 TGCATAGAATGTGACGATTTAGTC 57.171 37.500 0.00 0.00 41.30 2.59
237 238 5.753438 TGCATAGAATGTGACGATTTAGTCC 59.247 40.000 0.00 0.00 40.26 3.85
238 239 5.177696 GCATAGAATGTGACGATTTAGTCCC 59.822 44.000 0.00 0.00 40.26 4.46
239 240 4.819105 AGAATGTGACGATTTAGTCCCA 57.181 40.909 0.00 0.00 40.26 4.37
240 241 5.160607 AGAATGTGACGATTTAGTCCCAA 57.839 39.130 0.00 0.00 40.26 4.12
241 242 5.556915 AGAATGTGACGATTTAGTCCCAAA 58.443 37.500 0.00 0.00 40.26 3.28
242 243 5.411669 AGAATGTGACGATTTAGTCCCAAAC 59.588 40.000 0.00 0.00 40.26 2.93
243 244 4.345859 TGTGACGATTTAGTCCCAAACT 57.654 40.909 0.00 0.00 40.26 2.66
244 245 4.710324 TGTGACGATTTAGTCCCAAACTT 58.290 39.130 0.00 0.00 40.26 2.66
245 246 4.513692 TGTGACGATTTAGTCCCAAACTTG 59.486 41.667 0.00 0.00 40.26 3.16
246 247 3.500680 TGACGATTTAGTCCCAAACTTGC 59.499 43.478 0.00 0.00 40.26 4.01
247 248 3.482436 ACGATTTAGTCCCAAACTTGCA 58.518 40.909 0.00 0.00 39.55 4.08
248 249 3.886505 ACGATTTAGTCCCAAACTTGCAA 59.113 39.130 0.00 0.00 39.55 4.08
249 250 4.339814 ACGATTTAGTCCCAAACTTGCAAA 59.660 37.500 0.00 0.00 39.55 3.68
250 251 5.163499 ACGATTTAGTCCCAAACTTGCAAAA 60.163 36.000 0.00 0.00 39.55 2.44
251 252 5.174943 CGATTTAGTCCCAAACTTGCAAAAC 59.825 40.000 0.00 0.00 39.55 2.43
252 253 5.669164 TTTAGTCCCAAACTTGCAAAACT 57.331 34.783 0.00 0.00 39.55 2.66
253 254 5.669164 TTAGTCCCAAACTTGCAAAACTT 57.331 34.783 0.00 0.00 39.55 2.66
254 255 3.860641 AGTCCCAAACTTGCAAAACTTG 58.139 40.909 0.00 4.33 33.03 3.16
255 256 3.513515 AGTCCCAAACTTGCAAAACTTGA 59.486 39.130 13.60 0.00 33.03 3.02
256 257 3.616821 GTCCCAAACTTGCAAAACTTGAC 59.383 43.478 13.60 7.38 0.00 3.18
257 258 3.513515 TCCCAAACTTGCAAAACTTGACT 59.486 39.130 13.60 0.00 0.00 3.41
258 259 3.865164 CCCAAACTTGCAAAACTTGACTC 59.135 43.478 13.60 0.00 0.00 3.36
259 260 3.865164 CCAAACTTGCAAAACTTGACTCC 59.135 43.478 13.60 0.00 0.00 3.85
260 261 4.493547 CAAACTTGCAAAACTTGACTCCA 58.506 39.130 0.00 0.00 0.00 3.86
261 262 3.782889 ACTTGCAAAACTTGACTCCAC 57.217 42.857 0.00 0.00 0.00 4.02
262 263 2.427095 ACTTGCAAAACTTGACTCCACC 59.573 45.455 0.00 0.00 0.00 4.61
263 264 2.136298 TGCAAAACTTGACTCCACCA 57.864 45.000 0.00 0.00 0.00 4.17
264 265 2.665165 TGCAAAACTTGACTCCACCAT 58.335 42.857 0.00 0.00 0.00 3.55
265 266 3.826524 TGCAAAACTTGACTCCACCATA 58.173 40.909 0.00 0.00 0.00 2.74
266 267 3.568007 TGCAAAACTTGACTCCACCATAC 59.432 43.478 0.00 0.00 0.00 2.39
267 268 3.057526 GCAAAACTTGACTCCACCATACC 60.058 47.826 0.00 0.00 0.00 2.73
268 269 3.434940 AAACTTGACTCCACCATACCC 57.565 47.619 0.00 0.00 0.00 3.69
269 270 1.286248 ACTTGACTCCACCATACCCC 58.714 55.000 0.00 0.00 0.00 4.95
270 271 1.285280 CTTGACTCCACCATACCCCA 58.715 55.000 0.00 0.00 0.00 4.96
271 272 1.633432 CTTGACTCCACCATACCCCAA 59.367 52.381 0.00 0.00 0.00 4.12
272 273 0.988832 TGACTCCACCATACCCCAAC 59.011 55.000 0.00 0.00 0.00 3.77
273 274 1.286248 GACTCCACCATACCCCAACT 58.714 55.000 0.00 0.00 0.00 3.16
274 275 1.633945 GACTCCACCATACCCCAACTT 59.366 52.381 0.00 0.00 0.00 2.66
275 276 1.354368 ACTCCACCATACCCCAACTTG 59.646 52.381 0.00 0.00 0.00 3.16
276 277 0.039035 TCCACCATACCCCAACTTGC 59.961 55.000 0.00 0.00 0.00 4.01
277 278 0.251564 CCACCATACCCCAACTTGCA 60.252 55.000 0.00 0.00 0.00 4.08
278 279 0.887933 CACCATACCCCAACTTGCAC 59.112 55.000 0.00 0.00 0.00 4.57
279 280 0.777446 ACCATACCCCAACTTGCACT 59.223 50.000 0.00 0.00 0.00 4.40
280 281 1.989586 ACCATACCCCAACTTGCACTA 59.010 47.619 0.00 0.00 0.00 2.74
281 282 2.026262 ACCATACCCCAACTTGCACTAG 60.026 50.000 0.00 0.00 0.00 2.57
282 283 2.238646 CCATACCCCAACTTGCACTAGA 59.761 50.000 0.00 0.00 0.00 2.43
283 284 3.117888 CCATACCCCAACTTGCACTAGAT 60.118 47.826 0.00 0.00 0.00 1.98
284 285 2.496899 ACCCCAACTTGCACTAGATG 57.503 50.000 0.00 0.00 0.00 2.90
285 286 1.705186 ACCCCAACTTGCACTAGATGT 59.295 47.619 0.00 0.00 0.00 3.06
300 301 6.426646 ACTAGATGTGATGATTTAGTCCCC 57.573 41.667 0.00 0.00 0.00 4.81
301 302 4.342862 AGATGTGATGATTTAGTCCCCG 57.657 45.455 0.00 0.00 0.00 5.73
302 303 3.071602 AGATGTGATGATTTAGTCCCCGG 59.928 47.826 0.00 0.00 0.00 5.73
303 304 1.134220 TGTGATGATTTAGTCCCCGGC 60.134 52.381 0.00 0.00 0.00 6.13
304 305 0.472471 TGATGATTTAGTCCCCGGCC 59.528 55.000 0.00 0.00 0.00 6.13
305 306 0.765510 GATGATTTAGTCCCCGGCCT 59.234 55.000 0.00 0.00 0.00 5.19
306 307 1.975680 GATGATTTAGTCCCCGGCCTA 59.024 52.381 0.00 0.00 0.00 3.93
307 308 2.112279 TGATTTAGTCCCCGGCCTAT 57.888 50.000 0.00 0.00 0.00 2.57
308 309 1.975680 TGATTTAGTCCCCGGCCTATC 59.024 52.381 0.00 0.00 0.00 2.08
309 310 1.975680 GATTTAGTCCCCGGCCTATCA 59.024 52.381 0.00 0.00 0.00 2.15
310 311 1.125633 TTTAGTCCCCGGCCTATCAC 58.874 55.000 0.00 0.00 0.00 3.06
311 312 0.031917 TTAGTCCCCGGCCTATCACA 60.032 55.000 0.00 0.00 0.00 3.58
312 313 0.469331 TAGTCCCCGGCCTATCACAG 60.469 60.000 0.00 0.00 0.00 3.66
313 314 3.161450 TCCCCGGCCTATCACAGC 61.161 66.667 0.00 0.00 0.00 4.40
314 315 3.164269 CCCCGGCCTATCACAGCT 61.164 66.667 0.00 0.00 0.00 4.24
315 316 2.423446 CCCGGCCTATCACAGCTC 59.577 66.667 0.00 0.00 0.00 4.09
316 317 2.028190 CCGGCCTATCACAGCTCG 59.972 66.667 0.00 0.00 0.00 5.03
317 318 2.490148 CCGGCCTATCACAGCTCGA 61.490 63.158 0.00 0.00 0.00 4.04
318 319 1.299468 CGGCCTATCACAGCTCGAC 60.299 63.158 0.00 0.00 0.00 4.20
319 320 1.816537 GGCCTATCACAGCTCGACA 59.183 57.895 0.00 0.00 0.00 4.35
320 321 0.175760 GGCCTATCACAGCTCGACAA 59.824 55.000 0.00 0.00 0.00 3.18
321 322 1.565305 GCCTATCACAGCTCGACAAG 58.435 55.000 0.00 0.00 0.00 3.16
322 323 1.134965 GCCTATCACAGCTCGACAAGT 60.135 52.381 0.00 0.00 0.00 3.16
323 324 2.534298 CCTATCACAGCTCGACAAGTG 58.466 52.381 0.00 0.00 0.00 3.16
324 325 2.534298 CTATCACAGCTCGACAAGTGG 58.466 52.381 6.55 0.00 33.01 4.00
325 326 0.671781 ATCACAGCTCGACAAGTGGC 60.672 55.000 6.55 0.00 33.01 5.01
326 327 1.595109 CACAGCTCGACAAGTGGCA 60.595 57.895 0.00 0.00 0.00 4.92
327 328 1.301244 ACAGCTCGACAAGTGGCAG 60.301 57.895 0.00 0.00 0.00 4.85
328 329 2.358003 AGCTCGACAAGTGGCAGC 60.358 61.111 0.00 1.66 0.00 5.25
329 330 3.426568 GCTCGACAAGTGGCAGCC 61.427 66.667 3.66 3.66 0.00 4.85
330 331 2.031012 CTCGACAAGTGGCAGCCA 59.969 61.111 11.22 11.22 0.00 4.75
331 332 2.031012 TCGACAAGTGGCAGCCAG 59.969 61.111 16.83 5.91 32.34 4.85
332 333 3.052082 CGACAAGTGGCAGCCAGG 61.052 66.667 16.83 10.40 32.34 4.45
333 334 2.113986 GACAAGTGGCAGCCAGGT 59.886 61.111 16.83 13.96 32.34 4.00
334 335 2.203394 ACAAGTGGCAGCCAGGTG 60.203 61.111 16.83 18.20 32.34 4.00
335 336 2.987547 CAAGTGGCAGCCAGGTGG 60.988 66.667 16.83 0.00 32.34 4.61
345 346 2.839098 CCAGGTGGCTTGACTGGT 59.161 61.111 0.00 0.00 45.21 4.00
346 347 1.302832 CCAGGTGGCTTGACTGGTC 60.303 63.158 0.00 0.00 45.21 4.02
347 348 1.757306 CAGGTGGCTTGACTGGTCT 59.243 57.895 2.38 0.00 0.00 3.85
348 349 0.109342 CAGGTGGCTTGACTGGTCTT 59.891 55.000 2.38 0.00 0.00 3.01
349 350 0.398318 AGGTGGCTTGACTGGTCTTC 59.602 55.000 2.38 0.00 0.00 2.87
350 351 0.108585 GGTGGCTTGACTGGTCTTCA 59.891 55.000 2.38 0.00 0.00 3.02
351 352 1.271597 GGTGGCTTGACTGGTCTTCAT 60.272 52.381 2.38 0.00 0.00 2.57
352 353 2.079925 GTGGCTTGACTGGTCTTCATC 58.920 52.381 2.38 0.00 0.00 2.92
353 354 1.003580 TGGCTTGACTGGTCTTCATCC 59.996 52.381 2.38 0.00 0.00 3.51
354 355 1.680249 GGCTTGACTGGTCTTCATCCC 60.680 57.143 2.38 0.00 0.00 3.85
355 356 1.680249 GCTTGACTGGTCTTCATCCCC 60.680 57.143 2.38 0.00 0.00 4.81
356 357 1.630369 CTTGACTGGTCTTCATCCCCA 59.370 52.381 2.38 0.00 0.00 4.96
359 360 2.702093 CTGGTCTTCATCCCCAGGT 58.298 57.895 0.00 0.00 41.69 4.00
360 361 0.254178 CTGGTCTTCATCCCCAGGTG 59.746 60.000 0.00 0.00 41.69 4.00
361 362 1.207488 TGGTCTTCATCCCCAGGTGG 61.207 60.000 0.00 0.00 0.00 4.61
362 363 1.077429 GTCTTCATCCCCAGGTGGC 60.077 63.158 0.00 0.00 0.00 5.01
363 364 1.229951 TCTTCATCCCCAGGTGGCT 60.230 57.895 0.00 0.00 0.00 4.75
364 365 0.846427 TCTTCATCCCCAGGTGGCTT 60.846 55.000 0.00 0.00 0.00 4.35
365 366 0.682209 CTTCATCCCCAGGTGGCTTG 60.682 60.000 0.00 0.00 0.00 4.01
366 367 1.139498 TTCATCCCCAGGTGGCTTGA 61.139 55.000 0.00 0.00 0.00 3.02
367 368 1.379044 CATCCCCAGGTGGCTTGAC 60.379 63.158 0.00 0.00 0.00 3.18
368 369 1.852157 ATCCCCAGGTGGCTTGACA 60.852 57.895 0.00 0.00 0.00 3.58
369 370 1.434513 ATCCCCAGGTGGCTTGACAA 61.435 55.000 0.00 0.00 0.00 3.18
370 371 1.604593 CCCCAGGTGGCTTGACAAG 60.605 63.158 11.02 11.02 0.00 3.16
371 372 1.151450 CCCAGGTGGCTTGACAAGT 59.849 57.895 16.39 0.00 0.00 3.16
372 373 1.174712 CCCAGGTGGCTTGACAAGTG 61.175 60.000 16.39 6.44 0.00 3.16
373 374 1.174712 CCAGGTGGCTTGACAAGTGG 61.175 60.000 16.39 11.46 0.00 4.00
374 375 1.529244 AGGTGGCTTGACAAGTGGC 60.529 57.895 16.39 5.62 0.00 5.01
375 376 1.827789 GGTGGCTTGACAAGTGGCA 60.828 57.895 16.39 8.19 0.00 4.92
376 377 1.656441 GTGGCTTGACAAGTGGCAG 59.344 57.895 16.39 0.00 36.95 4.85
377 378 2.195567 TGGCTTGACAAGTGGCAGC 61.196 57.895 16.39 1.54 32.66 5.25
378 379 2.195567 GGCTTGACAAGTGGCAGCA 61.196 57.895 16.39 0.00 32.66 4.41
379 380 1.735360 GCTTGACAAGTGGCAGCAA 59.265 52.632 16.39 0.00 32.66 3.91
380 381 0.318445 GCTTGACAAGTGGCAGCAAG 60.318 55.000 16.39 0.00 39.06 4.01
381 382 0.318445 CTTGACAAGTGGCAGCAAGC 60.318 55.000 7.05 0.00 44.65 4.01
460 461 1.604592 CCCTCCCTCCCTACCCTCTT 61.605 65.000 0.00 0.00 0.00 2.85
461 462 0.343726 CCTCCCTCCCTACCCTCTTT 59.656 60.000 0.00 0.00 0.00 2.52
462 463 1.579191 CCTCCCTCCCTACCCTCTTTA 59.421 57.143 0.00 0.00 0.00 1.85
463 464 2.182536 CCTCCCTCCCTACCCTCTTTAT 59.817 54.545 0.00 0.00 0.00 1.40
464 465 3.405114 CCTCCCTCCCTACCCTCTTTATA 59.595 52.174 0.00 0.00 0.00 0.98
465 466 4.511294 CCTCCCTCCCTACCCTCTTTATAG 60.511 54.167 0.00 0.00 0.00 1.31
466 467 3.174779 CCCTCCCTACCCTCTTTATAGC 58.825 54.545 0.00 0.00 0.00 2.97
467 468 3.181405 CCCTCCCTACCCTCTTTATAGCT 60.181 52.174 0.00 0.00 0.00 3.32
468 469 4.090819 CCTCCCTACCCTCTTTATAGCTC 58.909 52.174 0.00 0.00 0.00 4.09
469 470 4.202738 CCTCCCTACCCTCTTTATAGCTCT 60.203 50.000 0.00 0.00 0.00 4.09
479 811 3.169908 CTTTATAGCTCTCTCCCTCCCC 58.830 54.545 0.00 0.00 0.00 4.81
504 836 2.126149 CGTTGCAGCGCTCTCTCT 60.126 61.111 7.13 0.00 0.00 3.10
959 1392 0.912486 CCTCCGTCTTCCTCCCATTT 59.088 55.000 0.00 0.00 0.00 2.32
1050 1500 4.491409 GGAAGGGGAAGAGCCGGC 62.491 72.222 21.89 21.89 37.63 6.13
1178 1631 0.307760 ACTTCTTTTGCCTTGTCGCG 59.692 50.000 0.00 0.00 0.00 5.87
1292 1814 6.384015 ACCTTTTTCTTGTCTTCTTGGGAAAT 59.616 34.615 0.00 0.00 0.00 2.17
1311 1833 8.197439 TGGGAAATTTTGTTTGTTTGTTTGTTT 58.803 25.926 0.00 0.00 0.00 2.83
1312 1834 8.483218 GGGAAATTTTGTTTGTTTGTTTGTTTG 58.517 29.630 0.00 0.00 0.00 2.93
1313 1835 9.025020 GGAAATTTTGTTTGTTTGTTTGTTTGT 57.975 25.926 0.00 0.00 0.00 2.83
1317 1839 8.964420 TTTTGTTTGTTTGTTTGTTTGTTCAA 57.036 23.077 0.00 0.00 0.00 2.69
1376 1905 1.451504 CAGTGCCTCACCCTGTCAA 59.548 57.895 0.00 0.00 34.49 3.18
1458 1987 2.556287 CGGCGTTTGTGCTTCTCC 59.444 61.111 0.00 0.00 34.52 3.71
1468 1997 0.257039 GTGCTTCTCCACCATGGGAT 59.743 55.000 18.09 0.00 38.32 3.85
1481 2010 1.355718 ATGGGATGGGAATGCCTCGT 61.356 55.000 0.00 0.00 32.75 4.18
1483 2012 1.700042 GGGATGGGAATGCCTCGTCT 61.700 60.000 0.00 0.00 0.00 4.18
1499 2028 0.605589 GTCTGGGAAAGGAACACCCG 60.606 60.000 0.00 0.00 45.91 5.28
1514 2043 5.334337 GGAACACCCGTATTCAAACTGTTAC 60.334 44.000 0.00 0.00 0.00 2.50
1516 2045 3.123959 CACCCGTATTCAAACTGTTACCG 59.876 47.826 0.00 0.00 0.00 4.02
1524 2053 2.701951 TCAAACTGTTACCGTCCTCCTT 59.298 45.455 0.00 0.00 0.00 3.36
1541 2070 0.925466 CTTGCAACAGCAACAGCAAC 59.075 50.000 0.00 0.00 42.91 4.17
1550 2079 1.202976 AGCAACAGCAACAGGGATCTT 60.203 47.619 0.00 0.00 0.00 2.40
1608 2137 0.825840 TGGCAACCCTGTAAACTGGC 60.826 55.000 0.71 0.00 34.08 4.85
1615 2144 1.302511 CTGTAAACTGGCCGCACCT 60.303 57.895 0.00 0.00 40.22 4.00
1631 2160 1.135083 CACCTCACTGCTAACGTAGGG 60.135 57.143 2.07 0.00 0.00 3.53
1696 2225 4.764823 CCAGGTCAACAAATGGTAGCTTAA 59.235 41.667 0.00 0.00 0.00 1.85
1702 2231 7.094377 GGTCAACAAATGGTAGCTTAATCTGAA 60.094 37.037 0.00 0.00 0.00 3.02
1703 2232 7.965107 GTCAACAAATGGTAGCTTAATCTGAAG 59.035 37.037 0.00 0.00 0.00 3.02
1704 2233 7.665559 TCAACAAATGGTAGCTTAATCTGAAGT 59.334 33.333 0.00 0.00 0.00 3.01
1705 2234 7.617041 ACAAATGGTAGCTTAATCTGAAGTC 57.383 36.000 0.00 0.00 0.00 3.01
1706 2235 7.398024 ACAAATGGTAGCTTAATCTGAAGTCT 58.602 34.615 0.00 0.00 0.00 3.24
1707 2236 7.335422 ACAAATGGTAGCTTAATCTGAAGTCTG 59.665 37.037 0.00 0.00 0.00 3.51
1708 2237 6.798427 ATGGTAGCTTAATCTGAAGTCTGA 57.202 37.500 0.00 0.00 0.00 3.27
1753 2289 1.658994 TGGTTCAGTTTCGACACCAC 58.341 50.000 0.00 0.00 32.38 4.16
1789 2328 1.823470 TTGTCCTGCAGTTGCGCTT 60.823 52.632 13.81 0.00 45.83 4.68
1790 2329 2.062361 TTGTCCTGCAGTTGCGCTTG 62.062 55.000 13.81 5.83 45.83 4.01
1791 2330 3.663176 TCCTGCAGTTGCGCTTGC 61.663 61.111 20.13 20.13 45.83 4.01
1932 2526 6.106673 GCTAGCTTACATTTACCTCACAAGA 58.893 40.000 7.70 0.00 0.00 3.02
1938 2532 7.065803 GCTTACATTTACCTCACAAGATTGCTA 59.934 37.037 0.00 0.00 0.00 3.49
1943 2537 8.946085 CATTTACCTCACAAGATTGCTACTTTA 58.054 33.333 0.00 0.00 0.00 1.85
1945 2539 8.547967 TTACCTCACAAGATTGCTACTTTAAG 57.452 34.615 0.00 0.00 0.00 1.85
2012 2608 2.479566 CCACAGGCACTTAGTGACAT 57.520 50.000 21.26 5.00 45.35 3.06
2013 2609 3.610040 CCACAGGCACTTAGTGACATA 57.390 47.619 21.26 0.00 45.35 2.29
2014 2610 4.142609 CCACAGGCACTTAGTGACATAT 57.857 45.455 21.26 1.85 45.35 1.78
2015 2611 3.873361 CCACAGGCACTTAGTGACATATG 59.127 47.826 21.26 12.36 45.35 1.78
2016 2612 4.507710 CACAGGCACTTAGTGACATATGT 58.492 43.478 21.26 13.04 45.35 2.29
2017 2613 5.395214 CCACAGGCACTTAGTGACATATGTA 60.395 44.000 21.26 0.00 45.35 2.29
2018 2614 6.106003 CACAGGCACTTAGTGACATATGTAA 58.894 40.000 21.26 0.00 45.35 2.41
2019 2615 6.256539 CACAGGCACTTAGTGACATATGTAAG 59.743 42.308 21.26 11.08 45.35 2.34
2094 2714 7.702348 GCCATATTGTTTCCTTTAGCAGTTTAG 59.298 37.037 0.00 0.00 0.00 1.85
2097 2717 5.941948 TGTTTCCTTTAGCAGTTTAGCTC 57.058 39.130 0.00 0.00 45.26 4.09
2132 2777 5.186256 TGTTTCCTAGCCATATGTTTGGA 57.814 39.130 1.24 3.13 39.25 3.53
2144 2789 6.520272 CCATATGTTTGGACCAGTTTGAAAA 58.480 36.000 1.24 0.00 39.25 2.29
2188 2834 8.653036 AGTAGTGAGGTATCAGTTCTACTTTT 57.347 34.615 0.00 0.00 38.65 2.27
2357 3012 5.231702 TGTCCCCGTACTCAAATTTAACT 57.768 39.130 0.00 0.00 0.00 2.24
2387 3042 5.415701 GCAGAGGATTTGGAAGTTGAATACA 59.584 40.000 0.00 0.00 0.00 2.29
2400 3055 7.556275 GGAAGTTGAATACAATAGGGTCATCAA 59.444 37.037 0.00 0.00 38.32 2.57
2401 3056 7.865706 AGTTGAATACAATAGGGTCATCAAC 57.134 36.000 7.11 7.11 41.70 3.18
2984 3640 0.398318 GGTTCTGTCTGAGGCAAGGT 59.602 55.000 0.00 0.00 0.00 3.50
3036 3692 3.887621 TCGGATCCGAAGAAATGAAGT 57.112 42.857 33.96 0.00 46.01 3.01
3044 3700 5.175859 TCCGAAGAAATGAAGTACCATCAC 58.824 41.667 1.37 0.00 0.00 3.06
3048 3704 6.238211 CGAAGAAATGAAGTACCATCACATCC 60.238 42.308 1.37 0.00 0.00 3.51
3122 3778 0.252421 TGGAGACTGGAGCATGGACT 60.252 55.000 0.00 0.00 0.00 3.85
3163 3819 4.649674 TCTGCGTTCAAGGGAGAATATACT 59.350 41.667 0.00 0.00 27.68 2.12
3176 3832 3.567164 AGAATATACTCCACGTACCGGTG 59.433 47.826 19.93 3.27 37.66 4.94
3185 3841 2.809696 CCACGTACCGGTGAAAAATTCT 59.190 45.455 19.93 0.00 40.38 2.40
3188 3844 2.473376 CGTACCGGTGAAAAATTCTCGC 60.473 50.000 19.93 0.00 0.00 5.03
3253 3909 4.484537 AGATGAAGAATCTGGACACCTG 57.515 45.455 0.00 0.00 44.36 4.00
3259 3915 0.617413 AATCTGGACACCTGAGCCTG 59.383 55.000 0.00 0.00 35.07 4.85
3260 3916 0.546267 ATCTGGACACCTGAGCCTGT 60.546 55.000 0.00 0.00 35.07 4.00
3275 3931 2.741985 TGTTGATGCGCGTGGAGG 60.742 61.111 6.97 0.00 0.00 4.30
3311 3967 2.281761 GTGGGTGGGTGCTCACAG 60.282 66.667 4.48 0.00 39.53 3.66
3318 3974 1.302832 GGGTGCTCACAGGGTTGAG 60.303 63.158 2.21 0.00 45.15 3.02
3321 3977 0.108585 GTGCTCACAGGGTTGAGGAA 59.891 55.000 2.48 0.00 44.56 3.36
3344 4000 7.365652 GGAAGAAGGTGAATAATCCTGGACTTA 60.366 40.741 0.00 0.00 33.97 2.24
3345 4001 7.510675 AGAAGGTGAATAATCCTGGACTTAA 57.489 36.000 0.00 0.00 33.97 1.85
3367 4023 1.449601 CGTTGACCCAGGATTCCCG 60.450 63.158 0.00 0.00 37.58 5.14
3370 4026 0.623324 TTGACCCAGGATTCCCGGAT 60.623 55.000 0.73 0.00 37.58 4.18
3376 4032 0.326264 CAGGATTCCCGGATGATCCC 59.674 60.000 20.38 7.89 37.58 3.85
3388 4044 3.931578 GGATGATCCCGAATTACCTGAG 58.068 50.000 0.00 0.00 0.00 3.35
3398 4054 4.363999 CGAATTACCTGAGGATGAGTGAC 58.636 47.826 4.99 0.00 0.00 3.67
3408 4064 1.271597 GGATGAGTGACCAGGTTTGCT 60.272 52.381 0.00 0.00 0.00 3.91
3413 4069 0.868406 GTGACCAGGTTTGCTCTTCG 59.132 55.000 0.00 0.00 0.00 3.79
3415 4071 1.347707 TGACCAGGTTTGCTCTTCGAT 59.652 47.619 0.00 0.00 0.00 3.59
3444 4100 7.364939 CCCACATGTTAATCAAATCAAAGGGAT 60.365 37.037 0.00 0.00 38.05 3.85
3448 4104 9.740239 CATGTTAATCAAATCAAAGGGATACTG 57.260 33.333 0.00 0.00 34.28 2.74
3460 4116 2.776536 AGGGATACTGATTCTGCTTGCT 59.223 45.455 0.00 0.00 0.00 3.91
3482 4138 7.600065 TGCTTCTTACTTACTAGTACAACCTG 58.400 38.462 0.91 0.00 36.61 4.00
3496 4152 4.019792 ACAACCTGATTCTGTACATGCA 57.980 40.909 0.00 0.00 0.00 3.96
3504 4160 5.069318 TGATTCTGTACATGCAAACCTCAA 58.931 37.500 0.00 0.00 0.00 3.02
3505 4161 5.711506 TGATTCTGTACATGCAAACCTCAAT 59.288 36.000 0.00 0.00 0.00 2.57
3541 4197 4.881920 TCTGTTTCTTTATTTTGCCCAGC 58.118 39.130 0.00 0.00 0.00 4.85
3577 4233 0.106819 CATGCCCAAGGAGGAGGAAG 60.107 60.000 0.00 0.00 41.22 3.46
3584 4240 1.557371 CAAGGAGGAGGAAGGGAGAAC 59.443 57.143 0.00 0.00 0.00 3.01
3597 4253 1.740025 GGGAGAACAAAGAAGATGGCG 59.260 52.381 0.00 0.00 0.00 5.69
3608 4264 1.665679 GAAGATGGCGAAGAATTGCGA 59.334 47.619 0.00 0.00 0.00 5.10
3610 4266 1.134699 AGATGGCGAAGAATTGCGAGA 60.135 47.619 0.00 0.00 0.00 4.04
3615 4271 0.305922 CGAAGAATTGCGAGATGGGC 59.694 55.000 0.00 0.00 0.00 5.36
3636 4293 1.968704 TCAGTCTGATCTATCGCCGT 58.031 50.000 0.00 0.00 0.00 5.68
3644 4301 1.852895 GATCTATCGCCGTGTGTCAAC 59.147 52.381 0.00 0.00 0.00 3.18
3645 4302 0.108992 TCTATCGCCGTGTGTCAACC 60.109 55.000 0.00 0.00 0.00 3.77
3687 4344 8.658499 AATTTCGTCTTAGTTAGTGTTGAACT 57.342 30.769 0.00 0.00 43.40 3.01
3716 4373 8.409358 AAGTTGCAAGTTTCACTATTATCCTT 57.591 30.769 13.86 0.00 0.00 3.36
3717 4374 9.515226 AAGTTGCAAGTTTCACTATTATCCTTA 57.485 29.630 13.86 0.00 0.00 2.69
3761 4418 4.523173 TCTTCCTTGTGTGTACTCGAGAAT 59.477 41.667 21.68 0.00 0.00 2.40
3781 4438 6.283694 AGAATGTATCGTTATGTGATGCACT 58.716 36.000 0.00 0.00 40.45 4.40
4140 4814 6.608405 TGATTGAGCTGGGATGTTGATTATTT 59.392 34.615 0.00 0.00 0.00 1.40
4288 4962 2.325583 TTCCAACAGTATGATCGCCC 57.674 50.000 0.00 0.00 39.69 6.13
4289 4963 0.104120 TCCAACAGTATGATCGCCCG 59.896 55.000 0.00 0.00 39.69 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 8.322828 CAGAATCTGATAGATCCTGAATGGAAT 58.677 37.037 3.77 0.00 39.15 3.01
13 14 7.256583 CCAGAATCTGATAGATCCTGAATGGAA 60.257 40.741 12.53 0.00 39.15 3.53
14 15 6.212993 CCAGAATCTGATAGATCCTGAATGGA 59.787 42.308 12.53 0.00 39.15 3.41
15 16 6.408035 CCAGAATCTGATAGATCCTGAATGG 58.592 44.000 12.53 0.18 39.15 3.16
16 17 5.875910 GCCAGAATCTGATAGATCCTGAATG 59.124 44.000 12.53 0.00 39.15 2.67
17 18 5.337410 CGCCAGAATCTGATAGATCCTGAAT 60.337 44.000 12.53 0.00 39.15 2.57
18 19 4.021632 CGCCAGAATCTGATAGATCCTGAA 60.022 45.833 12.53 0.00 39.15 3.02
19 20 3.509184 CGCCAGAATCTGATAGATCCTGA 59.491 47.826 12.53 0.00 39.15 3.86
20 21 3.509184 TCGCCAGAATCTGATAGATCCTG 59.491 47.826 12.53 0.00 36.91 3.86
21 22 3.772387 TCGCCAGAATCTGATAGATCCT 58.228 45.455 12.53 0.00 32.89 3.24
22 23 4.159321 TCATCGCCAGAATCTGATAGATCC 59.841 45.833 12.53 0.00 32.89 3.36
23 24 5.321959 TCATCGCCAGAATCTGATAGATC 57.678 43.478 12.53 0.00 32.89 2.75
24 25 5.936187 ATCATCGCCAGAATCTGATAGAT 57.064 39.130 12.53 10.02 36.28 1.98
25 26 5.359292 CCTATCATCGCCAGAATCTGATAGA 59.641 44.000 12.53 8.14 41.73 1.98
26 27 5.590145 CCTATCATCGCCAGAATCTGATAG 58.410 45.833 12.53 9.43 40.38 2.08
27 28 4.142071 GCCTATCATCGCCAGAATCTGATA 60.142 45.833 12.53 0.00 32.44 2.15
28 29 3.369261 GCCTATCATCGCCAGAATCTGAT 60.369 47.826 12.53 0.00 32.44 2.90
29 30 2.028658 GCCTATCATCGCCAGAATCTGA 60.029 50.000 12.53 0.00 32.44 3.27
30 31 2.344950 GCCTATCATCGCCAGAATCTG 58.655 52.381 2.68 2.68 0.00 2.90
31 32 1.067283 CGCCTATCATCGCCAGAATCT 60.067 52.381 0.00 0.00 0.00 2.40
32 33 1.354040 CGCCTATCATCGCCAGAATC 58.646 55.000 0.00 0.00 0.00 2.52
33 34 0.671781 GCGCCTATCATCGCCAGAAT 60.672 55.000 0.00 0.00 45.01 2.40
34 35 1.300931 GCGCCTATCATCGCCAGAA 60.301 57.895 0.00 0.00 45.01 3.02
35 36 2.340078 GCGCCTATCATCGCCAGA 59.660 61.111 0.00 0.00 45.01 3.86
41 42 4.664677 ACGCGGGCGCCTATCATC 62.665 66.667 28.56 7.30 44.19 2.92
42 43 4.664677 GACGCGGGCGCCTATCAT 62.665 66.667 28.56 8.55 44.19 2.45
57 58 1.901650 CTTTTGGCGTCGGCTGAGAC 61.902 60.000 20.29 0.00 39.81 3.36
58 59 1.667830 CTTTTGGCGTCGGCTGAGA 60.668 57.895 20.29 3.38 39.81 3.27
59 60 2.863153 CTTTTGGCGTCGGCTGAG 59.137 61.111 20.29 10.69 39.81 3.35
60 61 3.353836 GCTTTTGGCGTCGGCTGA 61.354 61.111 20.29 5.86 39.81 4.26
69 70 1.129437 CAACTCTAGAGCGCTTTTGGC 59.871 52.381 19.97 0.00 37.64 4.52
70 71 2.413453 GTCAACTCTAGAGCGCTTTTGG 59.587 50.000 19.97 5.55 0.00 3.28
71 72 3.059884 TGTCAACTCTAGAGCGCTTTTG 58.940 45.455 19.97 15.26 0.00 2.44
72 73 3.386768 TGTCAACTCTAGAGCGCTTTT 57.613 42.857 19.97 5.91 0.00 2.27
73 74 3.321497 CTTGTCAACTCTAGAGCGCTTT 58.679 45.455 19.97 9.07 0.00 3.51
74 75 2.353208 CCTTGTCAACTCTAGAGCGCTT 60.353 50.000 19.97 4.13 0.00 4.68
75 76 1.203523 CCTTGTCAACTCTAGAGCGCT 59.796 52.381 19.97 11.27 0.00 5.92
76 77 1.634702 CCTTGTCAACTCTAGAGCGC 58.365 55.000 19.97 0.00 0.00 5.92
77 78 1.067565 TGCCTTGTCAACTCTAGAGCG 60.068 52.381 19.97 11.29 0.00 5.03
78 79 2.028567 ACTGCCTTGTCAACTCTAGAGC 60.029 50.000 19.97 3.93 0.00 4.09
79 80 3.671971 CGACTGCCTTGTCAACTCTAGAG 60.672 52.174 18.49 18.49 36.82 2.43
80 81 2.229062 CGACTGCCTTGTCAACTCTAGA 59.771 50.000 0.00 0.00 36.82 2.43
81 82 2.229062 TCGACTGCCTTGTCAACTCTAG 59.771 50.000 0.00 0.00 36.82 2.43
82 83 2.235891 TCGACTGCCTTGTCAACTCTA 58.764 47.619 0.00 0.00 36.82 2.43
83 84 1.040646 TCGACTGCCTTGTCAACTCT 58.959 50.000 0.00 0.00 36.82 3.24
84 85 1.996191 GATCGACTGCCTTGTCAACTC 59.004 52.381 0.00 0.00 36.82 3.01
85 86 1.344438 TGATCGACTGCCTTGTCAACT 59.656 47.619 0.00 0.00 36.82 3.16
86 87 1.728971 CTGATCGACTGCCTTGTCAAC 59.271 52.381 0.00 0.00 36.82 3.18
87 88 1.941209 GCTGATCGACTGCCTTGTCAA 60.941 52.381 0.00 0.00 36.82 3.18
88 89 0.390340 GCTGATCGACTGCCTTGTCA 60.390 55.000 0.00 0.00 36.82 3.58
89 90 2.378028 GCTGATCGACTGCCTTGTC 58.622 57.895 0.00 0.00 37.46 3.18
90 91 4.606071 GCTGATCGACTGCCTTGT 57.394 55.556 0.00 0.00 37.46 3.16
95 96 1.710339 GTTTCGGCTGATCGACTGC 59.290 57.895 0.00 0.00 39.01 4.40
96 97 0.732880 ACGTTTCGGCTGATCGACTG 60.733 55.000 21.64 9.60 39.01 3.51
97 98 0.806868 TACGTTTCGGCTGATCGACT 59.193 50.000 21.64 7.85 39.01 4.18
98 99 1.582502 CTTACGTTTCGGCTGATCGAC 59.417 52.381 21.64 9.90 39.01 4.20
99 100 1.469703 TCTTACGTTTCGGCTGATCGA 59.530 47.619 21.64 3.41 37.38 3.59
100 101 1.904144 TCTTACGTTTCGGCTGATCG 58.096 50.000 15.75 15.75 0.00 3.69
101 102 3.508762 TCTTCTTACGTTTCGGCTGATC 58.491 45.455 0.00 0.00 0.00 2.92
102 103 3.587797 TCTTCTTACGTTTCGGCTGAT 57.412 42.857 0.00 0.00 0.00 2.90
103 104 3.005050 TCTTCTTCTTACGTTTCGGCTGA 59.995 43.478 0.00 0.00 0.00 4.26
104 105 3.314553 TCTTCTTCTTACGTTTCGGCTG 58.685 45.455 0.00 0.00 0.00 4.85
105 106 3.655276 TCTTCTTCTTACGTTTCGGCT 57.345 42.857 0.00 0.00 0.00 5.52
106 107 3.423253 GCTTCTTCTTCTTACGTTTCGGC 60.423 47.826 0.00 0.00 0.00 5.54
107 108 3.123116 GGCTTCTTCTTCTTACGTTTCGG 59.877 47.826 0.00 0.00 0.00 4.30
108 109 3.181543 CGGCTTCTTCTTCTTACGTTTCG 60.182 47.826 0.00 0.00 0.00 3.46
109 110 3.123116 CCGGCTTCTTCTTCTTACGTTTC 59.877 47.826 0.00 0.00 0.00 2.78
110 111 3.064931 CCGGCTTCTTCTTCTTACGTTT 58.935 45.455 0.00 0.00 0.00 3.60
111 112 2.612221 CCCGGCTTCTTCTTCTTACGTT 60.612 50.000 0.00 0.00 0.00 3.99
112 113 1.067071 CCCGGCTTCTTCTTCTTACGT 60.067 52.381 0.00 0.00 0.00 3.57
113 114 1.641577 CCCGGCTTCTTCTTCTTACG 58.358 55.000 0.00 0.00 0.00 3.18
114 115 1.338769 TGCCCGGCTTCTTCTTCTTAC 60.339 52.381 11.61 0.00 0.00 2.34
115 116 0.981183 TGCCCGGCTTCTTCTTCTTA 59.019 50.000 11.61 0.00 0.00 2.10
116 117 0.110486 TTGCCCGGCTTCTTCTTCTT 59.890 50.000 11.61 0.00 0.00 2.52
117 118 0.322008 CTTGCCCGGCTTCTTCTTCT 60.322 55.000 11.61 0.00 0.00 2.85
118 119 1.308783 CCTTGCCCGGCTTCTTCTTC 61.309 60.000 11.61 0.00 0.00 2.87
119 120 1.303643 CCTTGCCCGGCTTCTTCTT 60.304 57.895 11.61 0.00 0.00 2.52
120 121 2.352805 CCTTGCCCGGCTTCTTCT 59.647 61.111 11.61 0.00 0.00 2.85
121 122 2.751837 CCCTTGCCCGGCTTCTTC 60.752 66.667 11.61 0.00 0.00 2.87
122 123 3.256960 TCCCTTGCCCGGCTTCTT 61.257 61.111 11.61 0.00 0.00 2.52
123 124 4.035102 GTCCCTTGCCCGGCTTCT 62.035 66.667 11.61 0.00 0.00 2.85
130 131 2.035783 GACTTGGGTCCCTTGCCC 59.964 66.667 10.00 0.00 46.26 5.36
131 132 1.303643 CAGACTTGGGTCCCTTGCC 60.304 63.158 10.00 0.00 43.05 4.52
132 133 1.973812 GCAGACTTGGGTCCCTTGC 60.974 63.158 10.00 7.69 43.05 4.01
133 134 0.890996 GTGCAGACTTGGGTCCCTTG 60.891 60.000 10.00 4.30 43.05 3.61
134 135 1.062488 AGTGCAGACTTGGGTCCCTT 61.062 55.000 10.00 0.00 43.05 3.95
135 136 1.462238 AGTGCAGACTTGGGTCCCT 60.462 57.895 10.00 0.00 43.05 4.20
136 137 1.302832 CAGTGCAGACTTGGGTCCC 60.303 63.158 0.00 0.00 43.05 4.46
137 138 1.302832 CCAGTGCAGACTTGGGTCC 60.303 63.158 0.00 0.00 43.05 4.46
138 139 0.326264 ATCCAGTGCAGACTTGGGTC 59.674 55.000 0.00 0.00 42.41 4.46
139 140 0.037303 CATCCAGTGCAGACTTGGGT 59.963 55.000 0.00 0.00 0.00 4.51
140 141 2.864114 CATCCAGTGCAGACTTGGG 58.136 57.895 0.00 0.00 0.00 4.12
150 151 5.008415 GGTTCATCTAAGATTGCATCCAGTG 59.992 44.000 0.00 0.00 0.00 3.66
151 152 5.128919 GGTTCATCTAAGATTGCATCCAGT 58.871 41.667 0.00 0.00 0.00 4.00
152 153 5.128205 TGGTTCATCTAAGATTGCATCCAG 58.872 41.667 0.00 0.00 0.00 3.86
153 154 5.114764 TGGTTCATCTAAGATTGCATCCA 57.885 39.130 0.00 0.00 0.00 3.41
154 155 5.533903 ACATGGTTCATCTAAGATTGCATCC 59.466 40.000 0.00 0.00 0.00 3.51
155 156 6.436261 CACATGGTTCATCTAAGATTGCATC 58.564 40.000 0.00 0.00 0.00 3.91
156 157 5.221185 GCACATGGTTCATCTAAGATTGCAT 60.221 40.000 0.00 0.00 0.00 3.96
157 158 4.096833 GCACATGGTTCATCTAAGATTGCA 59.903 41.667 0.00 0.00 0.00 4.08
158 159 4.096833 TGCACATGGTTCATCTAAGATTGC 59.903 41.667 0.00 0.00 0.00 3.56
159 160 5.823209 TGCACATGGTTCATCTAAGATTG 57.177 39.130 0.00 0.00 0.00 2.67
160 161 6.604396 TCATTGCACATGGTTCATCTAAGATT 59.396 34.615 0.00 0.00 0.00 2.40
161 162 6.124340 TCATTGCACATGGTTCATCTAAGAT 58.876 36.000 0.00 0.00 0.00 2.40
162 163 5.499313 TCATTGCACATGGTTCATCTAAGA 58.501 37.500 0.00 0.00 0.00 2.10
163 164 5.220989 CCTCATTGCACATGGTTCATCTAAG 60.221 44.000 0.00 0.00 0.00 2.18
164 165 4.641541 CCTCATTGCACATGGTTCATCTAA 59.358 41.667 0.00 0.00 0.00 2.10
165 166 4.201657 CCTCATTGCACATGGTTCATCTA 58.798 43.478 0.00 0.00 0.00 1.98
166 167 3.021695 CCTCATTGCACATGGTTCATCT 58.978 45.455 0.00 0.00 0.00 2.90
167 168 2.756760 ACCTCATTGCACATGGTTCATC 59.243 45.455 0.00 0.00 0.00 2.92
168 169 2.811410 ACCTCATTGCACATGGTTCAT 58.189 42.857 0.00 0.00 0.00 2.57
169 170 2.291209 ACCTCATTGCACATGGTTCA 57.709 45.000 0.00 0.00 0.00 3.18
170 171 4.989279 ATTACCTCATTGCACATGGTTC 57.011 40.909 0.00 0.00 32.74 3.62
171 172 4.339247 GCTATTACCTCATTGCACATGGTT 59.661 41.667 0.00 0.00 32.74 3.67
172 173 3.885297 GCTATTACCTCATTGCACATGGT 59.115 43.478 0.00 6.96 35.05 3.55
173 174 3.884693 TGCTATTACCTCATTGCACATGG 59.115 43.478 0.00 1.90 31.12 3.66
177 178 6.983761 TGGGGTGCTATTACCTCATTGCAC 62.984 50.000 10.55 10.55 46.11 4.57
178 179 2.422803 GGGGTGCTATTACCTCATTGCA 60.423 50.000 0.00 0.00 41.08 4.08
179 180 2.230660 GGGGTGCTATTACCTCATTGC 58.769 52.381 0.00 0.00 41.08 3.56
180 181 3.576078 TGGGGTGCTATTACCTCATTG 57.424 47.619 0.00 0.00 46.11 2.82
184 185 1.508256 ACCTGGGGTGCTATTACCTC 58.492 55.000 0.00 0.00 41.82 3.85
185 186 2.405559 GTACCTGGGGTGCTATTACCT 58.594 52.381 0.00 0.00 40.66 3.08
186 187 1.419012 GGTACCTGGGGTGCTATTACC 59.581 57.143 4.06 0.00 38.37 2.85
187 188 2.924757 GGTACCTGGGGTGCTATTAC 57.075 55.000 4.06 0.00 38.37 1.89
202 203 4.096382 CACATTCTATGCAAGTTGGGGTAC 59.904 45.833 4.75 0.00 0.00 3.34
203 204 4.018870 TCACATTCTATGCAAGTTGGGGTA 60.019 41.667 4.75 0.00 0.00 3.69
204 205 3.091545 CACATTCTATGCAAGTTGGGGT 58.908 45.455 4.75 0.00 0.00 4.95
205 206 3.129287 GTCACATTCTATGCAAGTTGGGG 59.871 47.826 4.75 0.00 0.00 4.96
206 207 3.181507 CGTCACATTCTATGCAAGTTGGG 60.182 47.826 4.75 0.00 0.00 4.12
207 208 3.684305 TCGTCACATTCTATGCAAGTTGG 59.316 43.478 4.75 0.00 0.00 3.77
208 209 4.926860 TCGTCACATTCTATGCAAGTTG 57.073 40.909 0.00 0.00 0.00 3.16
209 210 6.500684 AAATCGTCACATTCTATGCAAGTT 57.499 33.333 0.00 0.00 0.00 2.66
210 211 6.818644 ACTAAATCGTCACATTCTATGCAAGT 59.181 34.615 0.00 0.00 0.00 3.16
211 212 7.239166 ACTAAATCGTCACATTCTATGCAAG 57.761 36.000 0.00 0.00 0.00 4.01
212 213 6.257849 GGACTAAATCGTCACATTCTATGCAA 59.742 38.462 0.00 0.00 35.63 4.08
213 214 5.753438 GGACTAAATCGTCACATTCTATGCA 59.247 40.000 0.00 0.00 35.63 3.96
214 215 5.177696 GGGACTAAATCGTCACATTCTATGC 59.822 44.000 0.00 0.00 37.28 3.14
215 216 6.280643 TGGGACTAAATCGTCACATTCTATG 58.719 40.000 0.00 0.00 42.08 2.23
216 217 6.479972 TGGGACTAAATCGTCACATTCTAT 57.520 37.500 0.00 0.00 42.08 1.98
217 218 5.925506 TGGGACTAAATCGTCACATTCTA 57.074 39.130 0.00 0.00 42.08 2.10
218 219 4.819105 TGGGACTAAATCGTCACATTCT 57.181 40.909 0.00 0.00 42.08 2.40
219 220 5.411669 AGTTTGGGACTAAATCGTCACATTC 59.588 40.000 0.00 0.00 45.89 2.67
220 221 5.313712 AGTTTGGGACTAAATCGTCACATT 58.686 37.500 0.00 0.00 45.89 2.71
221 222 4.906618 AGTTTGGGACTAAATCGTCACAT 58.093 39.130 0.00 0.00 45.89 3.21
222 223 4.345859 AGTTTGGGACTAAATCGTCACA 57.654 40.909 0.00 0.00 45.03 3.58
223 224 4.612939 GCAAGTTTGGGACTAAATCGTCAC 60.613 45.833 0.00 0.00 37.72 3.67
224 225 3.500680 GCAAGTTTGGGACTAAATCGTCA 59.499 43.478 0.00 0.00 37.72 4.35
225 226 3.500680 TGCAAGTTTGGGACTAAATCGTC 59.499 43.478 0.00 0.00 37.72 4.20
226 227 3.482436 TGCAAGTTTGGGACTAAATCGT 58.518 40.909 0.00 0.00 37.72 3.73
227 228 4.497473 TTGCAAGTTTGGGACTAAATCG 57.503 40.909 0.00 0.00 37.72 3.34
228 229 6.280643 AGTTTTGCAAGTTTGGGACTAAATC 58.719 36.000 0.00 0.00 37.72 2.17
229 230 6.233905 AGTTTTGCAAGTTTGGGACTAAAT 57.766 33.333 0.00 0.00 37.72 1.40
230 231 5.669164 AGTTTTGCAAGTTTGGGACTAAA 57.331 34.783 0.00 0.00 37.72 1.85
231 232 5.186021 TCAAGTTTTGCAAGTTTGGGACTAA 59.814 36.000 15.26 0.00 37.72 2.24
232 233 4.707448 TCAAGTTTTGCAAGTTTGGGACTA 59.293 37.500 15.26 0.00 37.72 2.59
233 234 3.513515 TCAAGTTTTGCAAGTTTGGGACT 59.486 39.130 15.26 4.73 41.47 3.85
234 235 3.616821 GTCAAGTTTTGCAAGTTTGGGAC 59.383 43.478 15.26 10.08 0.00 4.46
235 236 3.513515 AGTCAAGTTTTGCAAGTTTGGGA 59.486 39.130 15.26 3.31 0.00 4.37
236 237 3.860641 AGTCAAGTTTTGCAAGTTTGGG 58.139 40.909 15.26 1.35 0.00 4.12
237 238 3.865164 GGAGTCAAGTTTTGCAAGTTTGG 59.135 43.478 15.26 2.64 0.00 3.28
238 239 4.327087 GTGGAGTCAAGTTTTGCAAGTTTG 59.673 41.667 0.00 6.30 0.00 2.93
239 240 4.494484 GTGGAGTCAAGTTTTGCAAGTTT 58.506 39.130 0.00 0.00 0.00 2.66
240 241 3.119137 GGTGGAGTCAAGTTTTGCAAGTT 60.119 43.478 0.00 0.00 0.00 2.66
241 242 2.427095 GGTGGAGTCAAGTTTTGCAAGT 59.573 45.455 0.00 0.00 0.00 3.16
242 243 2.426738 TGGTGGAGTCAAGTTTTGCAAG 59.573 45.455 0.00 0.00 0.00 4.01
243 244 2.451490 TGGTGGAGTCAAGTTTTGCAA 58.549 42.857 0.00 0.00 0.00 4.08
244 245 2.136298 TGGTGGAGTCAAGTTTTGCA 57.864 45.000 0.00 0.00 0.00 4.08
245 246 3.057526 GGTATGGTGGAGTCAAGTTTTGC 60.058 47.826 0.00 0.00 0.00 3.68
246 247 3.506067 GGGTATGGTGGAGTCAAGTTTTG 59.494 47.826 0.00 0.00 0.00 2.44
247 248 3.499745 GGGGTATGGTGGAGTCAAGTTTT 60.500 47.826 0.00 0.00 0.00 2.43
248 249 2.041216 GGGGTATGGTGGAGTCAAGTTT 59.959 50.000 0.00 0.00 0.00 2.66
249 250 1.633945 GGGGTATGGTGGAGTCAAGTT 59.366 52.381 0.00 0.00 0.00 2.66
250 251 1.286248 GGGGTATGGTGGAGTCAAGT 58.714 55.000 0.00 0.00 0.00 3.16
251 252 1.285280 TGGGGTATGGTGGAGTCAAG 58.715 55.000 0.00 0.00 0.00 3.02
252 253 1.353022 GTTGGGGTATGGTGGAGTCAA 59.647 52.381 0.00 0.00 0.00 3.18
253 254 0.988832 GTTGGGGTATGGTGGAGTCA 59.011 55.000 0.00 0.00 0.00 3.41
254 255 1.286248 AGTTGGGGTATGGTGGAGTC 58.714 55.000 0.00 0.00 0.00 3.36
255 256 1.354368 CAAGTTGGGGTATGGTGGAGT 59.646 52.381 0.00 0.00 0.00 3.85
256 257 1.955208 GCAAGTTGGGGTATGGTGGAG 60.955 57.143 4.75 0.00 0.00 3.86
257 258 0.039035 GCAAGTTGGGGTATGGTGGA 59.961 55.000 4.75 0.00 0.00 4.02
258 259 0.251564 TGCAAGTTGGGGTATGGTGG 60.252 55.000 4.75 0.00 0.00 4.61
259 260 0.887933 GTGCAAGTTGGGGTATGGTG 59.112 55.000 4.75 0.00 0.00 4.17
260 261 0.777446 AGTGCAAGTTGGGGTATGGT 59.223 50.000 4.75 0.00 0.00 3.55
261 262 2.238646 TCTAGTGCAAGTTGGGGTATGG 59.761 50.000 4.75 0.00 0.00 2.74
262 263 3.627395 TCTAGTGCAAGTTGGGGTATG 57.373 47.619 4.75 0.00 0.00 2.39
263 264 3.523564 ACATCTAGTGCAAGTTGGGGTAT 59.476 43.478 4.75 0.00 0.00 2.73
264 265 2.910319 ACATCTAGTGCAAGTTGGGGTA 59.090 45.455 4.75 0.00 0.00 3.69
265 266 1.705186 ACATCTAGTGCAAGTTGGGGT 59.295 47.619 4.75 0.00 0.00 4.95
266 267 2.086869 CACATCTAGTGCAAGTTGGGG 58.913 52.381 4.75 0.00 42.15 4.96
277 278 5.011125 CGGGGACTAAATCATCACATCTAGT 59.989 44.000 0.00 0.00 0.00 2.57
278 279 5.473931 CGGGGACTAAATCATCACATCTAG 58.526 45.833 0.00 0.00 0.00 2.43
279 280 4.283467 CCGGGGACTAAATCATCACATCTA 59.717 45.833 0.00 0.00 0.00 1.98
280 281 3.071602 CCGGGGACTAAATCATCACATCT 59.928 47.826 0.00 0.00 0.00 2.90
281 282 3.403038 CCGGGGACTAAATCATCACATC 58.597 50.000 0.00 0.00 0.00 3.06
282 283 2.487265 GCCGGGGACTAAATCATCACAT 60.487 50.000 2.18 0.00 0.00 3.21
283 284 1.134220 GCCGGGGACTAAATCATCACA 60.134 52.381 2.18 0.00 0.00 3.58
284 285 1.594331 GCCGGGGACTAAATCATCAC 58.406 55.000 2.18 0.00 0.00 3.06
285 286 0.472471 GGCCGGGGACTAAATCATCA 59.528 55.000 2.18 0.00 0.00 3.07
286 287 0.765510 AGGCCGGGGACTAAATCATC 59.234 55.000 2.18 0.00 0.00 2.92
287 288 2.112279 TAGGCCGGGGACTAAATCAT 57.888 50.000 2.18 0.00 31.89 2.45
288 289 1.975680 GATAGGCCGGGGACTAAATCA 59.024 52.381 4.00 0.00 39.45 2.57
289 290 1.975680 TGATAGGCCGGGGACTAAATC 59.024 52.381 4.00 0.28 39.45 2.17
290 291 1.697982 GTGATAGGCCGGGGACTAAAT 59.302 52.381 4.00 0.00 39.45 1.40
291 292 1.125633 GTGATAGGCCGGGGACTAAA 58.874 55.000 4.00 0.00 39.45 1.85
292 293 0.031917 TGTGATAGGCCGGGGACTAA 60.032 55.000 4.00 0.00 39.45 2.24
293 294 0.469331 CTGTGATAGGCCGGGGACTA 60.469 60.000 2.18 2.05 40.42 2.59
294 295 1.762460 CTGTGATAGGCCGGGGACT 60.762 63.158 2.18 0.00 37.24 3.85
295 296 2.822399 CTGTGATAGGCCGGGGAC 59.178 66.667 2.18 0.00 0.00 4.46
296 297 3.161450 GCTGTGATAGGCCGGGGA 61.161 66.667 2.18 0.00 0.00 4.81
297 298 3.164269 AGCTGTGATAGGCCGGGG 61.164 66.667 2.18 0.00 0.00 5.73
298 299 2.423446 GAGCTGTGATAGGCCGGG 59.577 66.667 2.18 0.00 0.00 5.73
299 300 2.028190 CGAGCTGTGATAGGCCGG 59.972 66.667 0.00 0.00 0.00 6.13
300 301 1.299468 GTCGAGCTGTGATAGGCCG 60.299 63.158 0.00 0.00 0.00 6.13
301 302 0.175760 TTGTCGAGCTGTGATAGGCC 59.824 55.000 0.00 0.00 0.00 5.19
302 303 1.134965 ACTTGTCGAGCTGTGATAGGC 60.135 52.381 0.00 0.00 0.00 3.93
303 304 2.534298 CACTTGTCGAGCTGTGATAGG 58.466 52.381 0.00 0.00 32.72 2.57
304 305 2.534298 CCACTTGTCGAGCTGTGATAG 58.466 52.381 11.63 0.00 32.72 2.08
305 306 1.404181 GCCACTTGTCGAGCTGTGATA 60.404 52.381 11.63 0.00 32.72 2.15
306 307 0.671781 GCCACTTGTCGAGCTGTGAT 60.672 55.000 11.63 0.00 32.72 3.06
307 308 1.300931 GCCACTTGTCGAGCTGTGA 60.301 57.895 11.63 0.00 32.72 3.58
308 309 1.563435 CTGCCACTTGTCGAGCTGTG 61.563 60.000 0.00 0.00 0.00 3.66
309 310 1.301244 CTGCCACTTGTCGAGCTGT 60.301 57.895 0.00 0.00 0.00 4.40
310 311 2.675056 GCTGCCACTTGTCGAGCTG 61.675 63.158 0.00 0.00 0.00 4.24
311 312 2.358003 GCTGCCACTTGTCGAGCT 60.358 61.111 0.00 0.00 0.00 4.09
312 313 3.426568 GGCTGCCACTTGTCGAGC 61.427 66.667 15.17 0.00 0.00 5.03
313 314 2.031012 TGGCTGCCACTTGTCGAG 59.969 61.111 19.30 0.00 0.00 4.04
314 315 2.031012 CTGGCTGCCACTTGTCGA 59.969 61.111 19.30 0.00 0.00 4.20
315 316 3.052082 CCTGGCTGCCACTTGTCG 61.052 66.667 19.30 6.84 0.00 4.35
316 317 2.113986 ACCTGGCTGCCACTTGTC 59.886 61.111 19.30 0.00 0.00 3.18
317 318 2.203394 CACCTGGCTGCCACTTGT 60.203 61.111 19.30 12.40 0.00 3.16
318 319 2.987547 CCACCTGGCTGCCACTTG 60.988 66.667 19.30 16.70 0.00 3.16
329 330 0.109342 AAGACCAGTCAAGCCACCTG 59.891 55.000 0.00 0.00 0.00 4.00
330 331 0.398318 GAAGACCAGTCAAGCCACCT 59.602 55.000 0.00 0.00 0.00 4.00
331 332 0.108585 TGAAGACCAGTCAAGCCACC 59.891 55.000 0.00 0.00 0.00 4.61
332 333 2.079925 GATGAAGACCAGTCAAGCCAC 58.920 52.381 0.00 0.00 0.00 5.01
333 334 1.003580 GGATGAAGACCAGTCAAGCCA 59.996 52.381 0.00 0.00 0.00 4.75
334 335 1.680249 GGGATGAAGACCAGTCAAGCC 60.680 57.143 0.00 0.00 0.00 4.35
335 336 1.680249 GGGGATGAAGACCAGTCAAGC 60.680 57.143 0.00 0.00 0.00 4.01
336 337 1.630369 TGGGGATGAAGACCAGTCAAG 59.370 52.381 0.00 0.00 0.00 3.02
337 338 1.630369 CTGGGGATGAAGACCAGTCAA 59.370 52.381 0.00 0.00 45.21 3.18
338 339 1.279496 CTGGGGATGAAGACCAGTCA 58.721 55.000 0.00 0.00 45.21 3.41
342 343 1.207488 CCACCTGGGGATGAAGACCA 61.207 60.000 0.00 0.00 0.00 4.02
343 344 1.609783 CCACCTGGGGATGAAGACC 59.390 63.158 0.00 0.00 0.00 3.85
344 345 1.077429 GCCACCTGGGGATGAAGAC 60.077 63.158 0.00 0.00 37.04 3.01
345 346 0.846427 AAGCCACCTGGGGATGAAGA 60.846 55.000 0.00 0.00 37.04 2.87
346 347 0.682209 CAAGCCACCTGGGGATGAAG 60.682 60.000 0.00 0.00 37.04 3.02
347 348 1.139498 TCAAGCCACCTGGGGATGAA 61.139 55.000 0.00 0.00 37.04 2.57
348 349 1.541118 TCAAGCCACCTGGGGATGA 60.541 57.895 0.00 2.15 37.04 2.92
349 350 1.379044 GTCAAGCCACCTGGGGATG 60.379 63.158 0.00 0.00 37.04 3.51
350 351 1.434513 TTGTCAAGCCACCTGGGGAT 61.435 55.000 0.00 0.00 37.04 3.85
351 352 2.067932 CTTGTCAAGCCACCTGGGGA 62.068 60.000 0.00 0.00 37.04 4.81
352 353 1.604593 CTTGTCAAGCCACCTGGGG 60.605 63.158 0.00 0.00 37.04 4.96
353 354 1.151450 ACTTGTCAAGCCACCTGGG 59.849 57.895 12.66 0.00 40.85 4.45
354 355 1.174712 CCACTTGTCAAGCCACCTGG 61.175 60.000 12.66 8.44 38.53 4.45
355 356 1.799258 GCCACTTGTCAAGCCACCTG 61.799 60.000 12.66 3.07 0.00 4.00
356 357 1.529244 GCCACTTGTCAAGCCACCT 60.529 57.895 12.66 0.00 0.00 4.00
357 358 1.799258 CTGCCACTTGTCAAGCCACC 61.799 60.000 12.66 0.01 0.00 4.61
358 359 1.656441 CTGCCACTTGTCAAGCCAC 59.344 57.895 12.66 2.75 0.00 5.01
359 360 2.195567 GCTGCCACTTGTCAAGCCA 61.196 57.895 12.66 6.73 0.00 4.75
360 361 1.737355 TTGCTGCCACTTGTCAAGCC 61.737 55.000 12.66 2.41 0.00 4.35
361 362 0.318445 CTTGCTGCCACTTGTCAAGC 60.318 55.000 12.66 0.34 0.00 4.01
362 363 0.318445 GCTTGCTGCCACTTGTCAAG 60.318 55.000 11.17 11.17 37.70 3.02
363 364 1.735360 GCTTGCTGCCACTTGTCAA 59.265 52.632 0.00 0.00 35.15 3.18
364 365 2.545596 CGCTTGCTGCCACTTGTCA 61.546 57.895 0.00 0.00 38.78 3.58
365 366 2.253452 CGCTTGCTGCCACTTGTC 59.747 61.111 0.00 0.00 38.78 3.18
366 367 3.289834 CCGCTTGCTGCCACTTGT 61.290 61.111 0.00 0.00 38.78 3.16
367 368 4.712425 GCCGCTTGCTGCCACTTG 62.712 66.667 0.00 0.00 38.78 3.16
374 375 4.492160 CATGGCTGCCGCTTGCTG 62.492 66.667 14.98 0.80 42.00 4.41
375 376 4.728110 TCATGGCTGCCGCTTGCT 62.728 61.111 14.98 0.00 42.00 3.91
376 377 3.480225 GATCATGGCTGCCGCTTGC 62.480 63.158 14.98 0.00 41.77 4.01
377 378 2.116533 TGATCATGGCTGCCGCTTG 61.117 57.895 14.98 11.60 36.09 4.01
378 379 2.117156 GTGATCATGGCTGCCGCTT 61.117 57.895 14.98 0.00 36.09 4.68
379 380 2.515523 GTGATCATGGCTGCCGCT 60.516 61.111 14.98 0.27 36.09 5.52
380 381 2.191513 ATGTGATCATGGCTGCCGC 61.192 57.895 14.98 1.41 32.51 6.53
381 382 1.652563 CATGTGATCATGGCTGCCG 59.347 57.895 14.98 0.00 45.30 5.69
460 461 1.075698 CGGGGAGGGAGAGAGCTATAA 59.924 57.143 0.00 0.00 0.00 0.98
461 462 0.699399 CGGGGAGGGAGAGAGCTATA 59.301 60.000 0.00 0.00 0.00 1.31
462 463 1.462928 CGGGGAGGGAGAGAGCTAT 59.537 63.158 0.00 0.00 0.00 2.97
463 464 2.769120 CCGGGGAGGGAGAGAGCTA 61.769 68.421 0.00 0.00 35.97 3.32
464 465 4.150454 CCGGGGAGGGAGAGAGCT 62.150 72.222 0.00 0.00 35.97 4.09
465 466 3.986116 AACCGGGGAGGGAGAGAGC 62.986 68.421 6.32 0.00 46.96 4.09
466 467 1.306226 AAACCGGGGAGGGAGAGAG 60.306 63.158 6.32 0.00 46.96 3.20
467 468 1.305887 GAAACCGGGGAGGGAGAGA 60.306 63.158 6.32 0.00 46.96 3.10
468 469 2.368011 GGAAACCGGGGAGGGAGAG 61.368 68.421 6.32 0.00 46.96 3.20
469 470 2.285144 GGAAACCGGGGAGGGAGA 60.285 66.667 6.32 0.00 46.96 3.71
496 828 3.640967 AGAGAGAGAGAGAGAGAGAGAGC 59.359 52.174 0.00 0.00 0.00 4.09
959 1392 2.719705 ACAAGGGGTTTCTTGGTGGATA 59.280 45.455 9.06 0.00 46.04 2.59
1178 1631 2.570135 GGTGGAGAATCTGGAGATTGC 58.430 52.381 6.61 0.00 44.14 3.56
1292 1814 8.964420 TTGAACAAACAAACAAACAAACAAAA 57.036 23.077 0.00 0.00 0.00 2.44
1311 1833 3.855255 TGGAGTCATGGTTCTTGAACA 57.145 42.857 14.38 2.83 0.00 3.18
1312 1834 4.691860 CATGGAGTCATGGTTCTTGAAC 57.308 45.455 5.03 5.03 45.19 3.18
1376 1905 3.133464 CATGAACGCACGGGGCAT 61.133 61.111 1.92 0.00 45.17 4.40
1468 1997 2.669133 CCCAGACGAGGCATTCCCA 61.669 63.158 0.00 0.00 35.39 4.37
1481 2010 1.057851 ACGGGTGTTCCTTTCCCAGA 61.058 55.000 0.00 0.00 41.12 3.86
1483 2012 1.364269 ATACGGGTGTTCCTTTCCCA 58.636 50.000 0.00 0.00 41.12 4.37
1499 2028 4.628766 GGAGGACGGTAACAGTTTGAATAC 59.371 45.833 0.00 0.00 0.00 1.89
1514 2043 2.328099 GCTGTTGCAAGGAGGACGG 61.328 63.158 0.00 0.00 39.41 4.79
1541 2070 5.046735 TCTCTTTGAGTGAGAAAGATCCCTG 60.047 44.000 0.00 0.00 38.46 4.45
1550 2079 1.337260 GCGGCTCTCTTTGAGTGAGAA 60.337 52.381 10.30 0.00 44.41 2.87
1582 2111 1.541310 TACAGGGTTGCCACGAGGAG 61.541 60.000 1.86 0.00 36.89 3.69
1585 2114 0.872388 GTTTACAGGGTTGCCACGAG 59.128 55.000 0.00 0.00 0.00 4.18
1615 2144 1.610554 GGGCCCTACGTTAGCAGTGA 61.611 60.000 17.04 0.00 0.00 3.41
1631 2160 0.534203 TCGACCAAAGACAAGTGGGC 60.534 55.000 0.00 0.00 39.82 5.36
1696 2225 5.180868 GCAACATTCAGTTCAGACTTCAGAT 59.819 40.000 0.00 0.00 38.74 2.90
1702 2231 4.063689 CAGAGCAACATTCAGTTCAGACT 58.936 43.478 0.00 0.00 38.74 3.24
1703 2232 3.364764 GCAGAGCAACATTCAGTTCAGAC 60.365 47.826 0.00 0.00 38.74 3.51
1704 2233 2.810274 GCAGAGCAACATTCAGTTCAGA 59.190 45.455 0.00 0.00 38.74 3.27
1705 2234 2.551032 TGCAGAGCAACATTCAGTTCAG 59.449 45.455 0.00 0.00 38.74 3.02
1706 2235 2.291465 GTGCAGAGCAACATTCAGTTCA 59.709 45.455 0.00 0.00 41.47 3.18
1707 2236 2.551459 AGTGCAGAGCAACATTCAGTTC 59.449 45.455 0.00 0.00 41.47 3.01
1708 2237 2.579873 AGTGCAGAGCAACATTCAGTT 58.420 42.857 0.00 0.00 41.47 3.16
1733 2262 2.011222 GTGGTGTCGAAACTGAACCAA 58.989 47.619 5.55 0.00 42.32 3.67
1753 2289 4.629200 GGACAACATTCAGACTGAAGCTAG 59.371 45.833 21.78 14.20 40.05 3.42
1789 2328 1.227409 TCGAAACTGAACCAGCGCA 60.227 52.632 11.47 0.00 34.37 6.09
1790 2329 1.204312 GTCGAAACTGAACCAGCGC 59.796 57.895 0.00 0.00 34.37 5.92
1791 2330 0.508641 CTGTCGAAACTGAACCAGCG 59.491 55.000 0.00 0.00 34.37 5.18
1792 2331 1.583054 ACTGTCGAAACTGAACCAGC 58.417 50.000 0.00 0.00 34.37 4.85
1793 2332 4.809426 AGTAAACTGTCGAAACTGAACCAG 59.191 41.667 0.00 0.00 37.52 4.00
1794 2333 4.761975 AGTAAACTGTCGAAACTGAACCA 58.238 39.130 0.00 0.00 0.00 3.67
1932 2526 6.301169 AGCACTAGGTCTTAAAGTAGCAAT 57.699 37.500 0.00 0.00 0.00 3.56
1938 2532 9.697990 ATACTTAGTAGCACTAGGTCTTAAAGT 57.302 33.333 12.14 7.66 39.76 2.66
1943 2537 7.348033 ACTGATACTTAGTAGCACTAGGTCTT 58.652 38.462 6.21 4.87 39.76 3.01
1945 2539 7.419204 CAACTGATACTTAGTAGCACTAGGTC 58.581 42.308 6.21 0.00 39.76 3.85
2002 2598 7.306225 CGATGTGTGCTTACATATGTCACTAAG 60.306 40.741 20.58 15.89 41.15 2.18
2003 2599 6.475402 CGATGTGTGCTTACATATGTCACTAA 59.525 38.462 20.58 12.56 41.15 2.24
2004 2600 5.977129 CGATGTGTGCTTACATATGTCACTA 59.023 40.000 20.58 13.23 41.15 2.74
2005 2601 4.805719 CGATGTGTGCTTACATATGTCACT 59.194 41.667 20.58 10.17 41.15 3.41
2006 2602 4.025730 CCGATGTGTGCTTACATATGTCAC 60.026 45.833 12.68 14.58 41.15 3.67
2007 2603 4.119136 CCGATGTGTGCTTACATATGTCA 58.881 43.478 12.68 0.00 41.15 3.58
2008 2604 4.119862 ACCGATGTGTGCTTACATATGTC 58.880 43.478 12.68 0.00 41.15 3.06
2009 2605 4.137116 ACCGATGTGTGCTTACATATGT 57.863 40.909 13.93 13.93 41.15 2.29
2010 2606 5.064579 TCAAACCGATGTGTGCTTACATATG 59.935 40.000 0.00 0.00 41.15 1.78
2011 2607 5.182487 TCAAACCGATGTGTGCTTACATAT 58.818 37.500 6.42 0.00 41.15 1.78
2012 2608 4.570930 TCAAACCGATGTGTGCTTACATA 58.429 39.130 6.42 0.00 41.15 2.29
2013 2609 3.407698 TCAAACCGATGTGTGCTTACAT 58.592 40.909 6.17 6.17 43.61 2.29
2014 2610 2.839975 TCAAACCGATGTGTGCTTACA 58.160 42.857 0.00 0.00 34.63 2.41
2015 2611 3.889196 TTCAAACCGATGTGTGCTTAC 57.111 42.857 0.00 0.00 29.08 2.34
2016 2612 4.902443 TTTTCAAACCGATGTGTGCTTA 57.098 36.364 0.00 0.00 29.08 3.09
2017 2613 3.791973 TTTTCAAACCGATGTGTGCTT 57.208 38.095 0.00 0.00 29.08 3.91
2018 2614 4.320608 AATTTTCAAACCGATGTGTGCT 57.679 36.364 0.00 0.00 29.08 4.40
2019 2615 5.006165 TGAAAATTTTCAAACCGATGTGTGC 59.994 36.000 27.22 0.38 43.62 4.57
2094 2714 3.181500 GGAAACATATGGTCAAACCGAGC 60.181 47.826 7.80 0.00 42.58 5.03
2097 2717 4.035208 GCTAGGAAACATATGGTCAAACCG 59.965 45.833 7.80 0.00 42.58 4.44
2144 2789 7.341256 TCACTACTCTTACCCGTCTATGAAAAT 59.659 37.037 0.00 0.00 0.00 1.82
2188 2834 8.959548 ACAATGATGTAAAGATGATTAGCAACA 58.040 29.630 0.00 0.00 38.24 3.33
2357 3012 1.371467 TCCAAATCCTCTGCTCCCAA 58.629 50.000 0.00 0.00 0.00 4.12
2387 3042 6.884832 TGTTAATCTCGTTGATGACCCTATT 58.115 36.000 0.00 0.00 35.21 1.73
2400 3055 4.399618 TGCTAGCTCTCTTGTTAATCTCGT 59.600 41.667 17.23 0.00 0.00 4.18
2401 3056 4.926244 TGCTAGCTCTCTTGTTAATCTCG 58.074 43.478 17.23 0.00 0.00 4.04
2767 3422 9.246670 TGATGAGATAAGGACAATGTGAAAATT 57.753 29.630 0.00 0.00 0.00 1.82
2768 3423 8.812513 TGATGAGATAAGGACAATGTGAAAAT 57.187 30.769 0.00 0.00 0.00 1.82
2772 3427 6.550938 ACTGATGAGATAAGGACAATGTGA 57.449 37.500 0.00 0.00 0.00 3.58
2773 3428 6.820152 TGAACTGATGAGATAAGGACAATGTG 59.180 38.462 0.00 0.00 0.00 3.21
2984 3640 5.136068 TCCCTAAATACCCAAATGATGCA 57.864 39.130 0.00 0.00 0.00 3.96
3036 3692 4.405680 CCTTACAGTCAGGATGTGATGGTA 59.594 45.833 0.00 0.00 37.56 3.25
3044 3700 2.169352 CAGGGACCTTACAGTCAGGATG 59.831 54.545 7.86 0.00 38.59 3.51
3048 3704 1.938585 TCCAGGGACCTTACAGTCAG 58.061 55.000 0.00 0.00 38.59 3.51
3114 3770 4.584327 AAAACCTGTTTACAGTCCATGC 57.416 40.909 8.91 0.00 42.27 4.06
3122 3778 4.260294 CGCAGAACGTAAAACCTGTTTACA 60.260 41.667 9.06 0.00 35.27 2.41
3176 3832 4.359706 ACCACAGTTTGCGAGAATTTTTC 58.640 39.130 0.00 0.00 0.00 2.29
3185 3841 0.466543 ACAGGTACCACAGTTTGCGA 59.533 50.000 15.94 0.00 0.00 5.10
3188 3844 3.560068 GTCTTGACAGGTACCACAGTTTG 59.440 47.826 15.94 4.75 0.00 2.93
3253 3909 3.121030 ACGCGCATCAACAGGCTC 61.121 61.111 5.73 0.00 0.00 4.70
3259 3915 0.529773 TATCCTCCACGCGCATCAAC 60.530 55.000 5.73 0.00 0.00 3.18
3260 3916 0.392706 ATATCCTCCACGCGCATCAA 59.607 50.000 5.73 0.00 0.00 2.57
3275 3931 0.820871 CCCTCCGGAGCTGCTATATC 59.179 60.000 26.87 0.00 0.00 1.63
3311 3967 2.951229 TTCACCTTCTTCCTCAACCC 57.049 50.000 0.00 0.00 0.00 4.11
3318 3974 5.104318 AGTCCAGGATTATTCACCTTCTTCC 60.104 44.000 0.00 0.00 33.91 3.46
3321 3977 7.510675 TTAAGTCCAGGATTATTCACCTTCT 57.489 36.000 0.00 0.00 33.91 2.85
3344 4000 2.552373 GGAATCCTGGGTCAACGACTTT 60.552 50.000 0.00 0.00 32.47 2.66
3345 4001 1.003233 GGAATCCTGGGTCAACGACTT 59.997 52.381 0.00 0.00 32.47 3.01
3367 4023 3.307059 CCTCAGGTAATTCGGGATCATCC 60.307 52.174 0.00 0.00 35.23 3.51
3370 4026 3.040655 TCCTCAGGTAATTCGGGATCA 57.959 47.619 0.00 0.00 0.00 2.92
3376 4032 4.363999 GTCACTCATCCTCAGGTAATTCG 58.636 47.826 0.00 0.00 0.00 3.34
3383 4039 0.829333 CCTGGTCACTCATCCTCAGG 59.171 60.000 0.00 0.00 36.28 3.86
3388 4044 1.168714 GCAAACCTGGTCACTCATCC 58.831 55.000 0.00 0.00 0.00 3.51
3398 4054 2.678336 GGTAATCGAAGAGCAAACCTGG 59.322 50.000 0.00 0.00 43.63 4.45
3408 4064 6.645306 TGATTAACATGTGGGTAATCGAAGA 58.355 36.000 17.72 4.40 45.75 2.87
3413 4069 9.868277 TTTGATTTGATTAACATGTGGGTAATC 57.132 29.630 16.73 16.73 0.00 1.75
3415 4071 8.310382 CCTTTGATTTGATTAACATGTGGGTAA 58.690 33.333 0.00 0.00 0.00 2.85
3444 4100 6.042638 AGTAAGAAGCAAGCAGAATCAGTA 57.957 37.500 0.00 0.00 0.00 2.74
3448 4104 6.976636 AGTAAGTAAGAAGCAAGCAGAATC 57.023 37.500 0.00 0.00 0.00 2.52
3482 4138 5.627499 TTGAGGTTTGCATGTACAGAATC 57.373 39.130 0.33 0.00 0.00 2.52
3496 4152 8.517878 CAGATAATGTGTGAGAAATTGAGGTTT 58.482 33.333 0.00 0.00 0.00 3.27
3531 4187 0.540365 AGCAAGCTAGCTGGGCAAAA 60.540 50.000 31.50 0.00 44.66 2.44
3577 4233 1.740025 CGCCATCTTCTTTGTTCTCCC 59.260 52.381 0.00 0.00 0.00 4.30
3584 4240 3.855950 GCAATTCTTCGCCATCTTCTTTG 59.144 43.478 0.00 0.00 0.00 2.77
3597 4253 1.673168 AGCCCATCTCGCAATTCTTC 58.327 50.000 0.00 0.00 0.00 2.87
3608 4264 2.761809 AGATCAGACTGAAGCCCATCT 58.238 47.619 9.70 3.71 0.00 2.90
3610 4266 3.257873 CGATAGATCAGACTGAAGCCCAT 59.742 47.826 9.70 1.86 39.76 4.00
3615 4271 2.292016 ACGGCGATAGATCAGACTGAAG 59.708 50.000 16.62 0.00 39.76 3.02
3636 4293 1.149361 GCGACTTGACGGTTGACACA 61.149 55.000 0.00 0.00 0.00 3.72
3644 4301 3.806316 ATTAAACTTGCGACTTGACGG 57.194 42.857 0.00 0.00 0.00 4.79
3645 4302 4.314708 CGAAATTAAACTTGCGACTTGACG 59.685 41.667 0.00 0.00 0.00 4.35
3724 4381 8.542132 CACACAAGGAAGAAAACAACATAATTG 58.458 33.333 0.00 0.00 0.00 2.32
3741 4398 3.572682 ACATTCTCGAGTACACACAAGGA 59.427 43.478 13.13 0.00 0.00 3.36
3761 4418 4.570369 CCAAGTGCATCACATAACGATACA 59.430 41.667 0.00 0.00 36.74 2.29
3827 4489 6.711277 TCTATCTTGTTGGCTTCACTGTTAT 58.289 36.000 0.00 0.00 0.00 1.89
3831 4493 4.334759 CCATCTATCTTGTTGGCTTCACTG 59.665 45.833 0.00 0.00 0.00 3.66
4227 4901 5.794894 ACAAGTACTGAAGACAATACCCAG 58.205 41.667 0.00 0.00 30.28 4.45
4288 4962 1.247567 AAATGGACCAAGGAAGTGCG 58.752 50.000 0.00 0.00 0.00 5.34
4289 4963 2.627699 TCAAAATGGACCAAGGAAGTGC 59.372 45.455 0.00 0.00 0.00 4.40
4344 5018 9.019656 CCGCAGATTATCTTATAGGCTATCTAT 57.980 37.037 10.96 5.93 41.31 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.