Multiple sequence alignment - TraesCS3D01G514900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G514900 chr3D 100.000 6201 0 0 1 6201 598713387 598707187 0.000000e+00 11452.0
1 TraesCS3D01G514900 chr3D 88.736 2104 157 32 3318 5404 598584039 598581999 0.000000e+00 2499.0
2 TraesCS3D01G514900 chr3D 91.125 1555 103 14 3697 5238 598635543 598634011 0.000000e+00 2074.0
3 TraesCS3D01G514900 chr3D 82.230 1390 160 30 4756 6132 598681087 598679772 0.000000e+00 1118.0
4 TraesCS3D01G514900 chr3D 87.132 645 66 10 5299 5934 598634011 598633375 0.000000e+00 715.0
5 TraesCS3D01G514900 chr3D 94.444 54 3 0 2350 2403 598646700 598646647 3.980000e-12 84.2
6 TraesCS3D01G514900 chr3A 94.805 3330 130 22 2553 5875 728780073 728776780 0.000000e+00 5151.0
7 TraesCS3D01G514900 chr3A 86.518 1565 104 46 875 2407 728781554 728780065 0.000000e+00 1622.0
8 TraesCS3D01G514900 chr3A 85.665 1151 117 18 4802 5934 728774567 728773447 0.000000e+00 1168.0
9 TraesCS3D01G514900 chr3A 82.091 832 109 24 5312 6132 728755984 728755182 0.000000e+00 675.0
10 TraesCS3D01G514900 chr3A 85.758 330 30 7 5871 6199 728775915 728775602 3.580000e-87 333.0
11 TraesCS3D01G514900 chr3A 89.119 193 18 1 2214 2403 728780750 728780558 2.890000e-58 237.0
12 TraesCS3D01G514900 chr3A 88.506 174 20 0 690 863 728781793 728781620 1.750000e-50 211.0
13 TraesCS3D01G514900 chr3A 82.836 134 5 1 573 688 532473354 532473221 3.060000e-18 104.0
14 TraesCS3D01G514900 chr3A 81.667 120 22 0 6013 6132 728640496 728640377 3.960000e-17 100.0
15 TraesCS3D01G514900 chr3B 92.509 3017 188 19 2553 5547 805643722 805640722 0.000000e+00 4285.0
16 TraesCS3D01G514900 chr3B 89.368 1298 107 16 4346 5630 805519194 805520473 0.000000e+00 1604.0
17 TraesCS3D01G514900 chr3B 84.851 1010 87 20 1397 2397 805644781 805643829 0.000000e+00 957.0
18 TraesCS3D01G514900 chr3B 85.924 476 34 22 878 1340 805645258 805644803 1.560000e-130 477.0
19 TraesCS3D01G514900 chr3B 83.551 383 29 20 1537 1914 824984565 824984918 1.670000e-85 327.0
20 TraesCS3D01G514900 chr3B 100.000 95 0 0 2458 2552 740506103 740506009 6.390000e-40 176.0
21 TraesCS3D01G514900 chr3B 88.194 144 8 4 728 863 805645469 805645327 4.970000e-36 163.0
22 TraesCS3D01G514900 chr3B 77.852 149 29 3 5985 6132 805459708 805459563 8.560000e-14 89.8
23 TraesCS3D01G514900 chrUn 87.546 1887 184 28 3722 5580 197812023 197810160 0.000000e+00 2135.0
24 TraesCS3D01G514900 chrUn 87.440 1887 186 28 3722 5580 61908712 61910575 0.000000e+00 2124.0
25 TraesCS3D01G514900 chrUn 87.228 1887 190 28 3722 5580 206528360 206530223 0.000000e+00 2102.0
26 TraesCS3D01G514900 chrUn 92.157 1122 66 11 3246 4352 197826989 197825875 0.000000e+00 1565.0
27 TraesCS3D01G514900 chrUn 92.164 1123 64 13 3246 4352 207639737 207640851 0.000000e+00 1565.0
28 TraesCS3D01G514900 chrUn 92.108 1115 66 11 3246 4345 206516416 206517523 0.000000e+00 1552.0
29 TraesCS3D01G514900 chrUn 87.551 1229 115 18 3722 4922 246502554 246503772 0.000000e+00 1387.0
30 TraesCS3D01G514900 chrUn 89.941 1014 64 20 3636 4646 61802583 61801605 0.000000e+00 1273.0
31 TraesCS3D01G514900 chrUn 89.842 1014 70 20 3636 4646 61826911 61825928 0.000000e+00 1271.0
32 TraesCS3D01G514900 chrUn 92.428 832 58 4 2895 3726 246501533 246502359 0.000000e+00 1182.0
33 TraesCS3D01G514900 chrUn 92.308 832 59 4 2895 3726 61907691 61908517 0.000000e+00 1177.0
34 TraesCS3D01G514900 chrUn 92.188 832 60 4 2895 3726 206527339 206528165 0.000000e+00 1171.0
35 TraesCS3D01G514900 chrUn 92.159 829 60 4 2898 3726 197813041 197812218 0.000000e+00 1166.0
36 TraesCS3D01G514900 chrUn 92.067 832 61 4 2895 3726 391721201 391722027 0.000000e+00 1166.0
37 TraesCS3D01G514900 chrUn 92.098 772 56 4 2895 3666 207653929 207654695 0.000000e+00 1083.0
38 TraesCS3D01G514900 chrUn 91.839 772 58 4 2895 3666 433197353 433198119 0.000000e+00 1072.0
39 TraesCS3D01G514900 chrUn 88.036 886 83 11 4705 5580 208955242 208956114 0.000000e+00 1027.0
40 TraesCS3D01G514900 chrUn 87.020 886 83 15 4705 5580 377249228 377248365 0.000000e+00 970.0
41 TraesCS3D01G514900 chrUn 85.802 655 67 18 5298 5934 61800862 61800216 0.000000e+00 671.0
42 TraesCS3D01G514900 chrUn 85.758 653 72 14 5298 5934 61825705 61825058 0.000000e+00 671.0
43 TraesCS3D01G514900 chrUn 82.774 447 32 25 1087 1525 158041984 158042393 2.130000e-94 357.0
44 TraesCS3D01G514900 chrUn 83.290 383 30 20 1537 1914 158044372 158044725 7.750000e-84 322.0
45 TraesCS3D01G514900 chrUn 82.282 333 49 7 5566 5890 206536051 206535721 4.730000e-71 279.0
46 TraesCS3D01G514900 chrUn 82.282 333 49 7 5566 5890 208961941 208961611 4.730000e-71 279.0
47 TraesCS3D01G514900 chrUn 88.889 81 9 0 6052 6132 206541691 206541771 3.960000e-17 100.0
48 TraesCS3D01G514900 chrUn 88.889 81 9 0 6052 6132 208967581 208967661 3.960000e-17 100.0
49 TraesCS3D01G514900 chrUn 87.654 81 10 0 6052 6132 61922039 61922119 1.840000e-15 95.3
50 TraesCS3D01G514900 chrUn 87.654 81 10 0 6052 6132 197798695 197798615 1.840000e-15 95.3
51 TraesCS3D01G514900 chrUn 87.654 81 10 0 6052 6132 370391080 370391160 1.840000e-15 95.3
52 TraesCS3D01G514900 chrUn 87.654 81 10 0 6052 6132 432040979 432040899 1.840000e-15 95.3
53 TraesCS3D01G514900 chr1A 98.024 1063 18 3 4579 5639 438684351 438683290 0.000000e+00 1844.0
54 TraesCS3D01G514900 chr1A 89.383 697 59 12 1 688 361360491 361359801 0.000000e+00 863.0
55 TraesCS3D01G514900 chr1A 95.122 492 20 4 1 489 586756336 586755846 0.000000e+00 773.0
56 TraesCS3D01G514900 chr1A 92.258 155 4 3 2407 2553 547017955 547017801 4.870000e-51 213.0
57 TraesCS3D01G514900 chr1A 97.101 69 2 0 620 688 586755766 586755698 3.930000e-22 117.0
58 TraesCS3D01G514900 chr4B 90.909 693 48 12 1 687 427062038 427062721 0.000000e+00 917.0
59 TraesCS3D01G514900 chr7A 94.106 492 25 4 1 489 713892837 713893327 0.000000e+00 745.0
60 TraesCS3D01G514900 chr7A 85.294 136 2 1 571 688 713893340 713893475 2.350000e-24 124.0
61 TraesCS3D01G514900 chr5B 84.024 845 51 40 1087 1914 321205652 321204875 0.000000e+00 736.0
62 TraesCS3D01G514900 chr6A 93.456 489 27 4 4 489 21699926 21700412 0.000000e+00 721.0
63 TraesCS3D01G514900 chr6A 100.000 95 0 0 2458 2552 595620439 595620345 6.390000e-40 176.0
64 TraesCS3D01G514900 chr6A 85.294 136 2 1 571 688 21700425 21700560 2.350000e-24 124.0
65 TraesCS3D01G514900 chr1B 90.656 503 42 5 1 500 643045050 643045550 0.000000e+00 664.0
66 TraesCS3D01G514900 chr4D 92.144 471 32 5 1 468 507353595 507353127 0.000000e+00 660.0
67 TraesCS3D01G514900 chr2D 91.932 471 33 5 1 468 305772030 305771562 0.000000e+00 654.0
68 TraesCS3D01G514900 chr2D 94.595 148 5 1 2406 2553 585857478 585857334 6.250000e-55 226.0
69 TraesCS3D01G514900 chr5D 91.720 471 34 5 1 468 345648147 345648615 0.000000e+00 649.0
70 TraesCS3D01G514900 chr5D 91.837 147 7 1 2406 2552 522478895 522478754 3.790000e-47 200.0
71 TraesCS3D01G514900 chr1D 93.836 146 8 1 2409 2553 398365840 398365985 1.050000e-52 219.0
72 TraesCS3D01G514900 chr7B 89.865 148 9 5 2406 2553 616475900 616476041 1.060000e-42 185.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G514900 chr3D 598707187 598713387 6200 True 11452.000000 11452 100.000000 1 6201 1 chr3D.!!$R4 6200
1 TraesCS3D01G514900 chr3D 598581999 598584039 2040 True 2499.000000 2499 88.736000 3318 5404 1 chr3D.!!$R1 2086
2 TraesCS3D01G514900 chr3D 598633375 598635543 2168 True 1394.500000 2074 89.128500 3697 5934 2 chr3D.!!$R5 2237
3 TraesCS3D01G514900 chr3D 598679772 598681087 1315 True 1118.000000 1118 82.230000 4756 6132 1 chr3D.!!$R3 1376
4 TraesCS3D01G514900 chr3A 728773447 728781793 8346 True 1453.666667 5151 88.395167 690 6199 6 chr3A.!!$R4 5509
5 TraesCS3D01G514900 chr3A 728755182 728755984 802 True 675.000000 675 82.091000 5312 6132 1 chr3A.!!$R3 820
6 TraesCS3D01G514900 chr3B 805519194 805520473 1279 False 1604.000000 1604 89.368000 4346 5630 1 chr3B.!!$F1 1284
7 TraesCS3D01G514900 chr3B 805640722 805645469 4747 True 1470.500000 4285 87.869500 728 5547 4 chr3B.!!$R3 4819
8 TraesCS3D01G514900 chrUn 61907691 61910575 2884 False 1650.500000 2124 89.874000 2895 5580 2 chrUn.!!$F11 2685
9 TraesCS3D01G514900 chrUn 197810160 197813041 2881 True 1650.500000 2135 89.852500 2898 5580 2 chrUn.!!$R9 2682
10 TraesCS3D01G514900 chrUn 206527339 206530223 2884 False 1636.500000 2102 89.708000 2895 5580 2 chrUn.!!$F13 2685
11 TraesCS3D01G514900 chrUn 197825875 197826989 1114 True 1565.000000 1565 92.157000 3246 4352 1 chrUn.!!$R2 1106
12 TraesCS3D01G514900 chrUn 207639737 207640851 1114 False 1565.000000 1565 92.164000 3246 4352 1 chrUn.!!$F4 1106
13 TraesCS3D01G514900 chrUn 206516416 206517523 1107 False 1552.000000 1552 92.108000 3246 4345 1 chrUn.!!$F2 1099
14 TraesCS3D01G514900 chrUn 246501533 246503772 2239 False 1284.500000 1387 89.989500 2895 4922 2 chrUn.!!$F14 2027
15 TraesCS3D01G514900 chrUn 391721201 391722027 826 False 1166.000000 1166 92.067000 2895 3726 1 chrUn.!!$F9 831
16 TraesCS3D01G514900 chrUn 207653929 207654695 766 False 1083.000000 1083 92.098000 2895 3666 1 chrUn.!!$F5 771
17 TraesCS3D01G514900 chrUn 433197353 433198119 766 False 1072.000000 1072 91.839000 2895 3666 1 chrUn.!!$F10 771
18 TraesCS3D01G514900 chrUn 208955242 208956114 872 False 1027.000000 1027 88.036000 4705 5580 1 chrUn.!!$F6 875
19 TraesCS3D01G514900 chrUn 61800216 61802583 2367 True 972.000000 1273 87.871500 3636 5934 2 chrUn.!!$R7 2298
20 TraesCS3D01G514900 chrUn 61825058 61826911 1853 True 971.000000 1271 87.800000 3636 5934 2 chrUn.!!$R8 2298
21 TraesCS3D01G514900 chrUn 377248365 377249228 863 True 970.000000 970 87.020000 4705 5580 1 chrUn.!!$R5 875
22 TraesCS3D01G514900 chrUn 158041984 158044725 2741 False 339.500000 357 83.032000 1087 1914 2 chrUn.!!$F12 827
23 TraesCS3D01G514900 chr1A 438683290 438684351 1061 True 1844.000000 1844 98.024000 4579 5639 1 chr1A.!!$R2 1060
24 TraesCS3D01G514900 chr1A 361359801 361360491 690 True 863.000000 863 89.383000 1 688 1 chr1A.!!$R1 687
25 TraesCS3D01G514900 chr1A 586755698 586756336 638 True 445.000000 773 96.111500 1 688 2 chr1A.!!$R4 687
26 TraesCS3D01G514900 chr4B 427062038 427062721 683 False 917.000000 917 90.909000 1 687 1 chr4B.!!$F1 686
27 TraesCS3D01G514900 chr7A 713892837 713893475 638 False 434.500000 745 89.700000 1 688 2 chr7A.!!$F1 687
28 TraesCS3D01G514900 chr5B 321204875 321205652 777 True 736.000000 736 84.024000 1087 1914 1 chr5B.!!$R1 827
29 TraesCS3D01G514900 chr6A 21699926 21700560 634 False 422.500000 721 89.375000 4 688 2 chr6A.!!$F1 684
30 TraesCS3D01G514900 chr1B 643045050 643045550 500 False 664.000000 664 90.656000 1 500 1 chr1B.!!$F1 499

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
695 724 0.251297 CACCCTGCCCACATTTGAGA 60.251 55.0 0.00 0.0 0.00 3.27 F
2455 4569 0.454600 CGCATCCAGCTTTGCAGAAT 59.545 50.0 12.17 0.0 42.61 2.40 F
2531 4645 0.033504 ATGTTATGCGGGACTAGCGG 59.966 55.0 0.00 0.0 37.44 5.52 F
3737 6063 0.323629 GTGGGCAGCAGGTTAGTGTA 59.676 55.0 0.00 0.0 0.00 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2512 4626 0.033504 CCGCTAGTCCCGCATAACAT 59.966 55.000 0.00 0.0 0.00 2.71 R
3755 6081 0.682292 TGGAACTGCATACACCGTGA 59.318 50.000 5.28 0.0 0.00 4.35 R
3799 6128 1.270412 ACCCAGTCATTAACGCGAACA 60.270 47.619 15.93 0.0 0.00 3.18 R
5315 7873 0.884704 TCGGAAGAGCAGCAACAACC 60.885 55.000 0.00 0.0 34.84 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
227 230 0.463620 AACCAAGCACAACGCCATTT 59.536 45.000 0.00 0.00 44.04 2.32
288 291 1.523154 GGCGAAGGATGCAACAACCA 61.523 55.000 0.00 0.00 0.00 3.67
372 377 0.820871 GCTCACCAAACCACCAACAA 59.179 50.000 0.00 0.00 0.00 2.83
451 457 3.083997 ACACCCAGATCGAGCCCC 61.084 66.667 0.00 0.00 0.00 5.80
504 511 0.321653 GACGCCTTCATGGTCACCTT 60.322 55.000 0.00 0.00 38.35 3.50
525 532 1.879380 CTCGAGTAGATCAGCTCCTGG 59.121 57.143 3.62 0.00 31.51 4.45
551 561 3.009714 GGGGAGGAAGAACCGGCT 61.010 66.667 0.00 0.00 44.74 5.52
605 615 4.675029 CCGCCGAAGACAACCGGT 62.675 66.667 0.00 0.00 46.84 5.28
692 721 2.658422 GCACCCTGCCCACATTTG 59.342 61.111 0.00 0.00 37.42 2.32
693 722 1.907807 GCACCCTGCCCACATTTGA 60.908 57.895 0.00 0.00 37.42 2.69
694 723 1.880819 GCACCCTGCCCACATTTGAG 61.881 60.000 0.00 0.00 37.42 3.02
695 724 0.251297 CACCCTGCCCACATTTGAGA 60.251 55.000 0.00 0.00 0.00 3.27
696 725 0.706433 ACCCTGCCCACATTTGAGAT 59.294 50.000 0.00 0.00 0.00 2.75
697 726 1.108776 CCCTGCCCACATTTGAGATG 58.891 55.000 0.00 0.00 0.00 2.90
698 727 1.341285 CCCTGCCCACATTTGAGATGA 60.341 52.381 0.00 0.00 0.00 2.92
699 728 2.449464 CCTGCCCACATTTGAGATGAA 58.551 47.619 0.00 0.00 0.00 2.57
703 732 5.114764 TGCCCACATTTGAGATGAATAGA 57.885 39.130 0.00 0.00 0.00 1.98
706 735 6.608405 TGCCCACATTTGAGATGAATAGAAAT 59.392 34.615 0.00 0.00 0.00 2.17
708 737 7.201848 GCCCACATTTGAGATGAATAGAAATGA 60.202 37.037 0.00 0.00 37.42 2.57
709 738 8.133627 CCCACATTTGAGATGAATAGAAATGAC 58.866 37.037 0.00 0.00 37.42 3.06
713 742 4.960938 TGAGATGAATAGAAATGACCCGG 58.039 43.478 0.00 0.00 0.00 5.73
715 744 4.962155 AGATGAATAGAAATGACCCGGTC 58.038 43.478 10.96 10.96 0.00 4.79
739 768 5.505819 CGTAGATGCTCTTACTGGATTCGAA 60.506 44.000 0.00 0.00 0.00 3.71
741 770 4.646945 AGATGCTCTTACTGGATTCGAAGA 59.353 41.667 3.35 0.00 0.00 2.87
753 782 0.464870 TTCGAAGAACACCCGGTGAA 59.535 50.000 24.80 2.99 45.90 3.18
841 877 5.049398 AGAAAACAGAGCACTCGTACTAG 57.951 43.478 0.00 0.00 34.09 2.57
951 1041 1.517832 CAAGCCGGGATTCGTCTCT 59.482 57.895 2.18 0.00 37.11 3.10
952 1042 0.528684 CAAGCCGGGATTCGTCTCTC 60.529 60.000 2.18 0.00 37.11 3.20
953 1043 2.005960 AAGCCGGGATTCGTCTCTCG 62.006 60.000 2.18 2.86 38.88 4.04
955 1045 1.355916 CCGGGATTCGTCTCTCGTC 59.644 63.158 0.00 0.00 37.43 4.20
956 1046 1.096386 CCGGGATTCGTCTCTCGTCT 61.096 60.000 0.00 0.00 37.43 4.18
962 1052 1.007580 TTCGTCTCTCGTCTCCGATG 58.992 55.000 0.00 0.00 43.27 3.84
987 1077 2.325583 AAGTGTTCAAGTCAAGCCGA 57.674 45.000 0.00 0.00 0.00 5.54
990 1080 1.221466 TGTTCAAGTCAAGCCGAGCG 61.221 55.000 0.00 0.00 0.00 5.03
1032 1128 4.446167 CCCCAAGGCCAAAAAGAAAGAAAT 60.446 41.667 5.01 0.00 0.00 2.17
1034 1130 4.448732 CCAAGGCCAAAAAGAAAGAAATCG 59.551 41.667 5.01 0.00 0.00 3.34
1035 1131 4.937201 AGGCCAAAAAGAAAGAAATCGT 57.063 36.364 5.01 0.00 0.00 3.73
1036 1132 4.871513 AGGCCAAAAAGAAAGAAATCGTC 58.128 39.130 5.01 0.00 0.00 4.20
1037 1133 3.668656 GGCCAAAAAGAAAGAAATCGTCG 59.331 43.478 0.00 0.00 0.00 5.12
1066 1162 1.213182 GGACAGGAGGGGGAAGAAATC 59.787 57.143 0.00 0.00 0.00 2.17
1271 1395 0.767446 TCCTCGGTAACCAACCCCAA 60.767 55.000 0.00 0.00 46.62 4.12
1305 1429 4.473520 CACGCATCGCCTCCCCTT 62.474 66.667 0.00 0.00 0.00 3.95
1320 1445 1.209621 CCCTTAATCTTCACCCCCGA 58.790 55.000 0.00 0.00 0.00 5.14
1324 1449 1.682451 TAATCTTCACCCCCGAGCCG 61.682 60.000 0.00 0.00 0.00 5.52
1428 1553 7.432350 CAGATTCTGCTGTTTTTAGTCTCTT 57.568 36.000 0.00 0.00 0.00 2.85
1429 1554 8.539770 CAGATTCTGCTGTTTTTAGTCTCTTA 57.460 34.615 0.00 0.00 0.00 2.10
1430 1555 9.160496 CAGATTCTGCTGTTTTTAGTCTCTTAT 57.840 33.333 0.00 0.00 0.00 1.73
1448 1576 8.564574 GTCTCTTATCTTAGATTCGTGATCTGT 58.435 37.037 0.00 2.23 44.80 3.41
1502 1633 0.537188 GAGATTGGGGAGCGAGTGAA 59.463 55.000 0.00 0.00 0.00 3.18
1525 1656 1.135286 GCTGGTTTGGCTGAGTTATGC 60.135 52.381 0.00 0.00 0.00 3.14
1526 1657 2.440409 CTGGTTTGGCTGAGTTATGCT 58.560 47.619 0.00 0.00 0.00 3.79
1527 1658 3.609853 CTGGTTTGGCTGAGTTATGCTA 58.390 45.455 0.00 0.00 0.00 3.49
1528 1659 3.343617 TGGTTTGGCTGAGTTATGCTAC 58.656 45.455 0.00 0.00 0.00 3.58
1529 1660 2.683362 GGTTTGGCTGAGTTATGCTACC 59.317 50.000 0.00 0.00 0.00 3.18
1530 1661 3.610911 GTTTGGCTGAGTTATGCTACCT 58.389 45.455 0.00 0.00 0.00 3.08
1531 1662 4.010349 GTTTGGCTGAGTTATGCTACCTT 58.990 43.478 0.00 0.00 0.00 3.50
1532 1663 3.266510 TGGCTGAGTTATGCTACCTTG 57.733 47.619 0.00 0.00 0.00 3.61
1534 1665 2.092914 GGCTGAGTTATGCTACCTTGGT 60.093 50.000 0.00 0.00 0.00 3.67
1535 1666 2.939103 GCTGAGTTATGCTACCTTGGTG 59.061 50.000 2.03 0.00 0.00 4.17
1679 3779 3.722147 CCTGATGAAGGGTCATAACGAG 58.278 50.000 0.00 0.00 44.83 4.18
1757 3862 7.402054 TGTTCTTGTAGGTTGGTGATTGATAT 58.598 34.615 0.00 0.00 0.00 1.63
1792 3897 2.097110 GGGGGATTTGGGGGTAAATC 57.903 55.000 0.00 0.00 43.19 2.17
1806 3911 4.007659 GGGTAAATCAAGTGTGGATTCGT 58.992 43.478 0.00 0.00 34.02 3.85
1946 4051 3.876309 TCCTGCTGTTTTTAGTCCCTT 57.124 42.857 0.00 0.00 0.00 3.95
1949 4054 4.595781 TCCTGCTGTTTTTAGTCCCTTAGA 59.404 41.667 0.00 0.00 0.00 2.10
1950 4055 5.250774 TCCTGCTGTTTTTAGTCCCTTAGAT 59.749 40.000 0.00 0.00 0.00 1.98
1951 4056 5.946377 CCTGCTGTTTTTAGTCCCTTAGATT 59.054 40.000 0.00 0.00 0.00 2.40
1952 4057 7.037873 TCCTGCTGTTTTTAGTCCCTTAGATTA 60.038 37.037 0.00 0.00 0.00 1.75
1953 4058 7.610305 CCTGCTGTTTTTAGTCCCTTAGATTAA 59.390 37.037 0.00 0.00 0.00 1.40
1970 4075 9.569212 CTTAGATTAAATTCGTGATTTAGCGAC 57.431 33.333 0.00 0.00 40.36 5.19
1977 4082 0.727398 GTGATTTAGCGACACCAGCC 59.273 55.000 0.00 0.00 34.64 4.85
1991 4096 1.503542 CAGCCAACACGATTGAGGC 59.496 57.895 5.86 0.00 43.44 4.70
1992 4097 1.073025 AGCCAACACGATTGAGGCA 59.927 52.632 13.49 0.00 44.66 4.75
2040 4145 8.433126 CGAGTGAACTGTATACTTTTTGGTTAG 58.567 37.037 4.17 0.00 0.00 2.34
2139 4253 3.055385 TCCTCTAAATTGGCTGCTAACGT 60.055 43.478 0.00 0.00 0.00 3.99
2261 4375 8.580720 TCTCTTAGGTTAGTGATTGATAGCATC 58.419 37.037 0.00 0.00 0.00 3.91
2274 4388 1.176527 TAGCATCAAGTTGCCAAGGC 58.823 50.000 3.61 3.61 43.83 4.35
2283 4397 1.532794 TTGCCAAGGCGGGATTTGT 60.533 52.632 6.60 0.00 45.51 2.83
2404 4518 4.808895 TGCTTCGGTTATATTAGCTGTGTG 59.191 41.667 0.00 0.00 33.15 3.82
2407 4521 6.468333 TTCGGTTATATTAGCTGTGTGGTA 57.532 37.500 0.00 0.00 0.00 3.25
2408 4522 6.080648 TCGGTTATATTAGCTGTGTGGTAG 57.919 41.667 0.00 0.00 0.00 3.18
2411 4525 5.512576 GGTTATATTAGCTGTGTGGTAGGGG 60.513 48.000 0.00 0.00 0.00 4.79
2412 4526 1.966845 ATTAGCTGTGTGGTAGGGGT 58.033 50.000 0.00 0.00 0.00 4.95
2413 4527 0.981183 TTAGCTGTGTGGTAGGGGTG 59.019 55.000 0.00 0.00 0.00 4.61
2414 4528 1.550130 TAGCTGTGTGGTAGGGGTGC 61.550 60.000 0.00 0.00 0.00 5.01
2416 4530 1.003355 CTGTGTGGTAGGGGTGCAG 60.003 63.158 0.00 0.00 0.00 4.41
2417 4531 1.460497 TGTGTGGTAGGGGTGCAGA 60.460 57.895 0.00 0.00 0.00 4.26
2418 4532 1.296715 GTGTGGTAGGGGTGCAGAG 59.703 63.158 0.00 0.00 0.00 3.35
2419 4533 1.152118 TGTGGTAGGGGTGCAGAGT 60.152 57.895 0.00 0.00 0.00 3.24
2420 4534 1.296715 GTGGTAGGGGTGCAGAGTG 59.703 63.158 0.00 0.00 0.00 3.51
2421 4535 1.918293 TGGTAGGGGTGCAGAGTGG 60.918 63.158 0.00 0.00 0.00 4.00
2422 4536 2.269241 GTAGGGGTGCAGAGTGGC 59.731 66.667 0.00 0.00 0.00 5.01
2423 4537 3.390521 TAGGGGTGCAGAGTGGCG 61.391 66.667 0.00 0.00 36.28 5.69
2442 4556 4.626081 CCGACCCATCCCGCATCC 62.626 72.222 0.00 0.00 0.00 3.51
2444 4558 2.111878 GACCCATCCCGCATCCAG 59.888 66.667 0.00 0.00 0.00 3.86
2445 4559 4.195334 ACCCATCCCGCATCCAGC 62.195 66.667 0.00 0.00 40.87 4.85
2446 4560 3.882326 CCCATCCCGCATCCAGCT 61.882 66.667 0.00 0.00 42.61 4.24
2447 4561 2.194056 CCATCCCGCATCCAGCTT 59.806 61.111 0.00 0.00 42.61 3.74
2448 4562 1.454479 CCATCCCGCATCCAGCTTT 60.454 57.895 0.00 0.00 42.61 3.51
2449 4563 1.731433 CCATCCCGCATCCAGCTTTG 61.731 60.000 0.00 0.00 42.61 2.77
2450 4564 2.123428 ATCCCGCATCCAGCTTTGC 61.123 57.895 3.49 3.49 42.61 3.68
2452 4566 2.488355 CCGCATCCAGCTTTGCAG 59.512 61.111 12.17 6.10 42.61 4.41
2454 4568 1.588824 CCGCATCCAGCTTTGCAGAA 61.589 55.000 12.17 0.00 42.61 3.02
2455 4569 0.454600 CGCATCCAGCTTTGCAGAAT 59.545 50.000 12.17 0.00 42.61 2.40
2456 4570 1.533338 CGCATCCAGCTTTGCAGAATC 60.533 52.381 12.17 0.00 42.61 2.52
2457 4571 1.749634 GCATCCAGCTTTGCAGAATCT 59.250 47.619 7.91 0.00 41.15 2.40
2458 4572 2.223525 GCATCCAGCTTTGCAGAATCTC 60.224 50.000 7.91 0.00 41.15 2.75
2461 4575 3.276857 TCCAGCTTTGCAGAATCTCATC 58.723 45.455 0.00 0.00 0.00 2.92
2463 4577 2.358267 CAGCTTTGCAGAATCTCATCCC 59.642 50.000 0.00 0.00 0.00 3.85
2470 4584 5.635278 TGCAGAATCTCATCCCTTCATTA 57.365 39.130 0.00 0.00 0.00 1.90
2472 4586 4.450419 GCAGAATCTCATCCCTTCATTACG 59.550 45.833 0.00 0.00 0.00 3.18
2473 4587 5.740224 GCAGAATCTCATCCCTTCATTACGA 60.740 44.000 0.00 0.00 0.00 3.43
2475 4589 5.835819 AGAATCTCATCCCTTCATTACGAGA 59.164 40.000 0.00 0.00 32.98 4.04
2476 4590 5.720371 ATCTCATCCCTTCATTACGAGAG 57.280 43.478 0.00 0.00 32.04 3.20
2478 4592 4.956700 TCTCATCCCTTCATTACGAGAGTT 59.043 41.667 0.00 0.00 46.40 3.01
2479 4593 5.422331 TCTCATCCCTTCATTACGAGAGTTT 59.578 40.000 0.00 0.00 46.40 2.66
2480 4594 6.605995 TCTCATCCCTTCATTACGAGAGTTTA 59.394 38.462 0.00 0.00 46.40 2.01
2481 4595 6.806751 TCATCCCTTCATTACGAGAGTTTAG 58.193 40.000 0.00 0.00 46.40 1.85
2483 4597 6.452494 TCCCTTCATTACGAGAGTTTAGAG 57.548 41.667 0.00 0.00 46.40 2.43
2484 4598 5.044558 CCCTTCATTACGAGAGTTTAGAGC 58.955 45.833 0.00 0.00 46.40 4.09
2486 4600 5.746245 CCTTCATTACGAGAGTTTAGAGCTG 59.254 44.000 0.00 0.00 46.40 4.24
2487 4601 5.899120 TCATTACGAGAGTTTAGAGCTGT 57.101 39.130 0.00 0.00 46.40 4.40
2488 4602 5.881447 TCATTACGAGAGTTTAGAGCTGTC 58.119 41.667 0.00 0.00 46.40 3.51
2490 4604 3.840890 ACGAGAGTTTAGAGCTGTCAG 57.159 47.619 0.00 0.00 46.40 3.51
2491 4605 3.150767 ACGAGAGTTTAGAGCTGTCAGT 58.849 45.455 0.93 0.00 46.40 3.41
2492 4606 3.570550 ACGAGAGTTTAGAGCTGTCAGTT 59.429 43.478 0.93 0.00 46.40 3.16
2493 4607 4.038162 ACGAGAGTTTAGAGCTGTCAGTTT 59.962 41.667 0.93 0.00 46.40 2.66
2495 4609 6.071840 ACGAGAGTTTAGAGCTGTCAGTTTAT 60.072 38.462 0.93 0.00 46.40 1.40
2496 4610 6.809196 CGAGAGTTTAGAGCTGTCAGTTTATT 59.191 38.462 0.93 0.00 0.00 1.40
2497 4611 7.329717 CGAGAGTTTAGAGCTGTCAGTTTATTT 59.670 37.037 0.93 0.00 0.00 1.40
2498 4612 8.910351 AGAGTTTAGAGCTGTCAGTTTATTTT 57.090 30.769 0.93 0.00 0.00 1.82
2500 4614 8.677148 AGTTTAGAGCTGTCAGTTTATTTTGA 57.323 30.769 0.93 0.00 0.00 2.69
2502 4616 9.170584 GTTTAGAGCTGTCAGTTTATTTTGAAC 57.829 33.333 0.93 0.00 0.00 3.18
2503 4617 8.677148 TTAGAGCTGTCAGTTTATTTTGAACT 57.323 30.769 0.93 0.00 37.82 3.01
2504 4618 9.772973 TTAGAGCTGTCAGTTTATTTTGAACTA 57.227 29.630 0.93 0.00 35.68 2.24
2505 4619 8.677148 AGAGCTGTCAGTTTATTTTGAACTAA 57.323 30.769 0.93 0.00 35.68 2.24
2506 4620 8.560374 AGAGCTGTCAGTTTATTTTGAACTAAC 58.440 33.333 0.93 0.00 35.68 2.34
2507 4621 8.451908 AGCTGTCAGTTTATTTTGAACTAACT 57.548 30.769 0.93 0.00 35.68 2.24
2508 4622 8.903820 AGCTGTCAGTTTATTTTGAACTAACTT 58.096 29.630 0.93 0.00 35.68 2.66
2520 4634 9.855021 ATTTTGAACTAACTTACCATGTTATGC 57.145 29.630 0.00 0.00 30.73 3.14
2521 4635 6.656314 TGAACTAACTTACCATGTTATGCG 57.344 37.500 0.00 0.00 30.73 4.73
2522 4636 5.583061 TGAACTAACTTACCATGTTATGCGG 59.417 40.000 0.00 0.00 30.73 5.69
2523 4637 4.448210 ACTAACTTACCATGTTATGCGGG 58.552 43.478 0.00 0.00 30.73 6.13
2524 4638 3.637911 AACTTACCATGTTATGCGGGA 57.362 42.857 0.00 0.00 0.00 5.14
2525 4639 2.914059 ACTTACCATGTTATGCGGGAC 58.086 47.619 0.00 0.00 0.00 4.46
2526 4640 2.504175 ACTTACCATGTTATGCGGGACT 59.496 45.455 0.00 0.00 0.00 3.85
2527 4641 3.707611 ACTTACCATGTTATGCGGGACTA 59.292 43.478 0.00 0.00 0.00 2.59
2528 4642 2.910688 ACCATGTTATGCGGGACTAG 57.089 50.000 0.00 0.00 0.00 2.57
2529 4643 1.202651 ACCATGTTATGCGGGACTAGC 60.203 52.381 0.00 0.00 0.00 3.42
2530 4644 1.139989 CATGTTATGCGGGACTAGCG 58.860 55.000 0.00 0.00 37.44 4.26
2531 4645 0.033504 ATGTTATGCGGGACTAGCGG 59.966 55.000 0.00 0.00 37.44 5.52
2532 4646 1.300697 GTTATGCGGGACTAGCGGG 60.301 63.158 0.00 0.00 37.44 6.13
2533 4647 1.456145 TTATGCGGGACTAGCGGGA 60.456 57.895 0.00 0.00 37.44 5.14
2534 4648 1.741327 TTATGCGGGACTAGCGGGAC 61.741 60.000 0.00 0.00 37.44 4.46
2546 4660 4.552365 CGGGACCCGCATCTGCAT 62.552 66.667 22.37 0.00 41.17 3.96
2547 4661 2.592861 GGGACCCGCATCTGCATC 60.593 66.667 0.00 0.00 42.21 3.91
2548 4662 2.592861 GGACCCGCATCTGCATCC 60.593 66.667 2.72 2.57 42.21 3.51
2549 4663 2.592861 GACCCGCATCTGCATCCC 60.593 66.667 2.72 0.00 42.21 3.85
2550 4664 3.092511 ACCCGCATCTGCATCCCT 61.093 61.111 2.72 0.00 42.21 4.20
2551 4665 1.758440 GACCCGCATCTGCATCCCTA 61.758 60.000 2.72 0.00 42.21 3.53
2566 4680 1.685224 CCTACTGTGTGGTGCCCAT 59.315 57.895 0.00 0.00 35.28 4.00
2570 4684 0.823356 ACTGTGTGGTGCCCATGAAC 60.823 55.000 0.00 0.00 35.28 3.18
2632 4747 1.079819 CGGACACGGTTGAGCTGAT 60.080 57.895 0.00 0.00 36.18 2.90
2662 4777 2.050836 TTTGGGGAGCGAGTCAAGCA 62.051 55.000 0.00 0.00 37.01 3.91
2710 4826 2.084546 GCTACACGAGGGAAATGCTTT 58.915 47.619 0.00 0.00 0.00 3.51
2779 4895 1.362768 CTGCTAATGCGAGTGCTTGA 58.637 50.000 0.00 0.00 43.34 3.02
3242 5360 7.838079 AGATCTTCTGTGCTGTAGATCTAAT 57.162 36.000 18.92 0.00 46.99 1.73
3387 5509 4.974103 AATATTTCGAGCGCTGACATAC 57.026 40.909 18.48 0.00 0.00 2.39
3564 5691 4.020218 TGTTTATCTGTCCTTCTGTCAGGG 60.020 45.833 0.00 0.00 34.24 4.45
3737 6063 0.323629 GTGGGCAGCAGGTTAGTGTA 59.676 55.000 0.00 0.00 0.00 2.90
3758 6084 9.539825 AGTGTAATTGTCTCTCAATATCATCAC 57.460 33.333 0.00 0.00 44.85 3.06
3777 6106 2.083774 ACGGTGTATGCAGTTCCATTG 58.916 47.619 0.00 0.00 0.00 2.82
3784 6113 2.222007 TGCAGTTCCATTGTTTGTGC 57.778 45.000 0.00 0.00 0.00 4.57
3799 6128 7.864108 TTGTTTGTGCAGATAGCTATATGTT 57.136 32.000 25.08 0.00 45.94 2.71
3800 6129 7.250445 TGTTTGTGCAGATAGCTATATGTTG 57.750 36.000 25.08 13.94 45.94 3.33
3907 6247 7.826744 TGTACTGATGATGCTTGGTTATAAACA 59.173 33.333 0.00 0.00 0.00 2.83
3940 6282 8.571336 ACCTTGAAATTCATAGAAAACTCACTG 58.429 33.333 0.00 0.00 0.00 3.66
3974 6321 8.581253 AATGTTCCCCTTCTTAAGTTCTTATG 57.419 34.615 1.63 0.00 0.00 1.90
3996 6343 3.181469 GCTCTCAATACCATTGACCGGTA 60.181 47.826 7.34 0.00 43.06 4.02
4081 6430 9.952030 TCAACAGTCCAACTAATATAAATGTGA 57.048 29.630 0.00 0.00 0.00 3.58
4123 6472 2.364970 TGTTGGCCTTTGATGAAGTTGG 59.635 45.455 3.32 0.00 33.29 3.77
4130 6479 4.278419 GCCTTTGATGAAGTTGGTACAAGT 59.722 41.667 0.00 0.00 36.52 3.16
4226 6579 2.561478 TTGCGAGGGTTTTCTAAGCT 57.439 45.000 0.00 0.00 32.40 3.74
4375 6741 2.216046 CATCTATGTGCTGCGATGGTT 58.784 47.619 6.58 0.00 31.87 3.67
4546 6914 5.894807 GCTTTGAGCATACAAATACACCAT 58.105 37.500 0.00 0.00 41.89 3.55
4950 7496 0.673644 AGAACGCGGTTCCCAAGATG 60.674 55.000 12.47 0.00 42.85 2.90
5315 7873 1.718396 TTGAGACTGCATCTGCTTCG 58.282 50.000 3.53 0.00 38.00 3.79
5444 8010 8.753497 AGTTCAGGTTTCTTACTCTTTCAAAT 57.247 30.769 0.00 0.00 0.00 2.32
5596 11445 0.038166 TTGCCATGACTGGGAACTCC 59.962 55.000 0.00 0.00 46.74 3.85
5639 11489 6.101997 CCCATGTTTTCTTTTTGATAGAGGC 58.898 40.000 0.00 0.00 0.00 4.70
5640 11490 6.101997 CCATGTTTTCTTTTTGATAGAGGCC 58.898 40.000 0.00 0.00 0.00 5.19
5643 11493 8.689972 CATGTTTTCTTTTTGATAGAGGCCTAT 58.310 33.333 4.42 4.57 38.26 2.57
5667 11517 4.462483 GGCTGATTCCACCAGTAAAAATGA 59.538 41.667 0.00 0.00 34.29 2.57
5713 11566 4.011966 TGATCTGCCATGCCATAGTAAG 57.988 45.455 0.00 0.00 0.00 2.34
5714 11567 2.260844 TCTGCCATGCCATAGTAAGC 57.739 50.000 0.00 0.00 0.00 3.09
5759 11617 6.373005 TGACCTGATGATTTCTTTGGTAGA 57.627 37.500 0.00 0.00 0.00 2.59
5779 11639 7.993758 TGGTAGAGGGAATCGAGACTATATATG 59.006 40.741 0.00 0.00 0.00 1.78
5786 11646 7.363007 GGGAATCGAGACTATATATGTGCAAGA 60.363 40.741 0.00 0.00 0.00 3.02
5803 11663 0.779997 AGAGGCAGTTTTCCCACCAT 59.220 50.000 0.00 0.00 0.00 3.55
5860 11721 2.615912 GTCCATACTCCATGCTCTTTGC 59.384 50.000 0.00 0.00 43.25 3.68
5934 11795 0.824109 TGTGAGCCAATAGAGGGACG 59.176 55.000 0.00 0.00 0.00 4.79
5935 11796 0.530870 GTGAGCCAATAGAGGGACGC 60.531 60.000 0.00 0.00 0.00 5.19
5936 11797 1.300233 GAGCCAATAGAGGGACGCG 60.300 63.158 3.53 3.53 0.00 6.01
5937 11798 2.967615 GCCAATAGAGGGACGCGC 60.968 66.667 5.73 0.00 0.00 6.86
5938 11799 2.280186 CCAATAGAGGGACGCGCC 60.280 66.667 5.73 8.77 0.00 6.53
5939 11800 2.499205 CAATAGAGGGACGCGCCA 59.501 61.111 18.87 1.61 38.95 5.69
5940 11801 1.153449 CAATAGAGGGACGCGCCAA 60.153 57.895 18.87 4.37 38.95 4.52
5941 11802 0.532862 CAATAGAGGGACGCGCCAAT 60.533 55.000 18.87 8.62 38.95 3.16
5942 11803 1.045407 AATAGAGGGACGCGCCAATA 58.955 50.000 18.87 9.85 38.95 1.90
5943 11804 0.603569 ATAGAGGGACGCGCCAATAG 59.396 55.000 18.87 0.00 38.95 1.73
5944 11805 0.466739 TAGAGGGACGCGCCAATAGA 60.467 55.000 18.87 0.55 38.95 1.98
5945 11806 1.300233 GAGGGACGCGCCAATAGAG 60.300 63.158 18.87 0.00 38.95 2.43
5946 11807 2.280186 GGGACGCGCCAATAGAGG 60.280 66.667 18.87 0.00 38.95 3.69
5947 11808 2.280186 GGACGCGCCAATAGAGGG 60.280 66.667 5.73 0.00 36.34 4.30
5948 11809 2.792947 GGACGCGCCAATAGAGGGA 61.793 63.158 5.73 0.00 36.34 4.20
5949 11810 1.591863 GACGCGCCAATAGAGGGAC 60.592 63.158 5.73 0.00 0.00 4.46
5950 11811 2.280186 CGCGCCAATAGAGGGACC 60.280 66.667 0.00 0.00 0.00 4.46
5951 11812 2.111251 GCGCCAATAGAGGGACCC 59.889 66.667 0.59 0.59 0.00 4.46
5952 11813 2.421739 CGCCAATAGAGGGACCCG 59.578 66.667 4.40 0.00 0.00 5.28
5953 11814 2.111251 GCCAATAGAGGGACCCGC 59.889 66.667 6.06 6.06 0.00 6.13
5954 11815 2.444256 GCCAATAGAGGGACCCGCT 61.444 63.158 21.53 21.53 37.45 5.52
5955 11816 1.749033 CCAATAGAGGGACCCGCTC 59.251 63.158 21.44 5.79 42.60 5.03
5956 11817 1.749033 CAATAGAGGGACCCGCTCC 59.251 63.158 21.44 3.59 43.17 4.70
5957 11818 0.760945 CAATAGAGGGACCCGCTCCT 60.761 60.000 21.44 11.08 43.17 3.69
5958 11819 0.760945 AATAGAGGGACCCGCTCCTG 60.761 60.000 21.44 0.00 43.17 3.86
5963 11829 3.319198 GGACCCGCTCCTGGTTCA 61.319 66.667 0.00 0.00 35.85 3.18
5983 11850 3.455910 TCATGTTGAACTAGATGGGAGGG 59.544 47.826 0.00 0.00 0.00 4.30
5989 11856 1.237163 CTAGATGGGAGGGGAGCCA 59.763 63.158 0.00 0.00 0.00 4.75
5999 11866 0.575333 AGGGGAGCCAATAGAGGGAT 59.425 55.000 0.00 0.00 0.00 3.85
6000 11867 1.060244 AGGGGAGCCAATAGAGGGATT 60.060 52.381 0.00 0.00 0.00 3.01
6017 11884 3.254903 GGGATTTCCTGTTGTACCAACAC 59.745 47.826 5.73 0.00 33.69 3.32
6032 11899 0.542232 AACACGGGAGGAGTGCTAGT 60.542 55.000 0.00 0.00 42.94 2.57
6082 11949 2.503920 AACCGATAAGGGATTCGTCG 57.496 50.000 0.00 0.00 46.96 5.12
6090 11958 3.343941 AAGGGATTCGTCGGATTTTGA 57.656 42.857 0.00 0.00 0.00 2.69
6099 11967 8.339714 GGATTCGTCGGATTTTGATGTAAAATA 58.660 33.333 0.00 0.00 46.27 1.40
6100 11968 9.878599 GATTCGTCGGATTTTGATGTAAAATAT 57.121 29.630 0.00 0.00 46.27 1.28
6132 12000 6.716934 TGAGAAGATAATCGCCTCTACTTT 57.283 37.500 0.00 0.00 0.00 2.66
6133 12001 7.113658 TGAGAAGATAATCGCCTCTACTTTT 57.886 36.000 0.00 0.00 0.00 2.27
6134 12002 7.203910 TGAGAAGATAATCGCCTCTACTTTTC 58.796 38.462 0.00 0.00 0.00 2.29
6135 12003 6.210078 AGAAGATAATCGCCTCTACTTTTCG 58.790 40.000 0.00 0.00 0.00 3.46
6136 12004 4.299978 AGATAATCGCCTCTACTTTTCGC 58.700 43.478 0.00 0.00 0.00 4.70
6137 12005 1.278238 AATCGCCTCTACTTTTCGCG 58.722 50.000 0.00 0.00 44.00 5.87
6138 12006 4.470876 CGCCTCTACTTTTCGCGA 57.529 55.556 3.71 3.71 45.41 5.87
6139 12007 2.733127 CGCCTCTACTTTTCGCGAA 58.267 52.632 19.38 19.38 45.41 4.70
6140 12008 1.278238 CGCCTCTACTTTTCGCGAAT 58.722 50.000 24.05 10.74 45.41 3.34
6141 12009 1.659098 CGCCTCTACTTTTCGCGAATT 59.341 47.619 24.05 12.54 45.41 2.17
6142 12010 2.855963 CGCCTCTACTTTTCGCGAATTA 59.144 45.455 24.05 12.89 45.41 1.40
6143 12011 3.489785 CGCCTCTACTTTTCGCGAATTAT 59.510 43.478 24.05 13.00 45.41 1.28
6144 12012 4.025979 CGCCTCTACTTTTCGCGAATTATT 60.026 41.667 24.05 10.56 45.41 1.40
6145 12013 5.501897 CGCCTCTACTTTTCGCGAATTATTT 60.502 40.000 24.05 8.17 45.41 1.40
6146 12014 5.902432 GCCTCTACTTTTCGCGAATTATTTC 59.098 40.000 24.05 3.29 0.00 2.17
6147 12015 6.419771 CCTCTACTTTTCGCGAATTATTTCC 58.580 40.000 24.05 0.00 0.00 3.13
6148 12016 6.258068 CCTCTACTTTTCGCGAATTATTTCCT 59.742 38.462 24.05 2.30 0.00 3.36
6149 12017 7.201617 CCTCTACTTTTCGCGAATTATTTCCTT 60.202 37.037 24.05 2.55 0.00 3.36
6150 12018 8.036273 TCTACTTTTCGCGAATTATTTCCTTT 57.964 30.769 24.05 1.11 0.00 3.11
6151 12019 8.508875 TCTACTTTTCGCGAATTATTTCCTTTT 58.491 29.630 24.05 0.00 0.00 2.27
6152 12020 9.763465 CTACTTTTCGCGAATTATTTCCTTTTA 57.237 29.630 24.05 0.00 0.00 1.52
6154 12022 9.634163 ACTTTTCGCGAATTATTTCCTTTTATT 57.366 25.926 24.05 0.00 0.00 1.40
6156 12024 9.627395 TTTTCGCGAATTATTTCCTTTTATTCA 57.373 25.926 24.05 0.00 0.00 2.57
6157 12025 8.609478 TTCGCGAATTATTTCCTTTTATTCAC 57.391 30.769 19.38 0.00 0.00 3.18
6158 12026 6.902948 TCGCGAATTATTTCCTTTTATTCACG 59.097 34.615 6.20 0.00 34.12 4.35
6159 12027 6.902948 CGCGAATTATTTCCTTTTATTCACGA 59.097 34.615 0.00 0.00 34.50 4.35
6160 12028 7.586300 CGCGAATTATTTCCTTTTATTCACGAT 59.414 33.333 0.00 0.00 34.50 3.73
6161 12029 8.682016 GCGAATTATTTCCTTTTATTCACGATG 58.318 33.333 0.00 0.00 0.00 3.84
6162 12030 9.169468 CGAATTATTTCCTTTTATTCACGATGG 57.831 33.333 0.00 0.00 0.00 3.51
6163 12031 9.463443 GAATTATTTCCTTTTATTCACGATGGG 57.537 33.333 0.00 0.00 0.00 4.00
6164 12032 5.852282 ATTTCCTTTTATTCACGATGGGG 57.148 39.130 0.00 0.00 0.00 4.96
6165 12033 4.577988 TTCCTTTTATTCACGATGGGGA 57.422 40.909 0.00 0.00 0.00 4.81
6166 12034 3.881220 TCCTTTTATTCACGATGGGGAC 58.119 45.455 0.00 0.00 0.00 4.46
6167 12035 2.612212 CCTTTTATTCACGATGGGGACG 59.388 50.000 0.00 0.00 0.00 4.79
6168 12036 3.527533 CTTTTATTCACGATGGGGACGA 58.472 45.455 0.00 0.00 34.70 4.20
6169 12037 2.589798 TTATTCACGATGGGGACGAC 57.410 50.000 0.00 0.00 34.70 4.34
6170 12038 1.476477 TATTCACGATGGGGACGACA 58.524 50.000 0.00 0.00 34.70 4.35
6171 12039 0.830648 ATTCACGATGGGGACGACAT 59.169 50.000 0.00 0.00 34.70 3.06
6172 12040 1.476477 TTCACGATGGGGACGACATA 58.524 50.000 0.00 0.00 34.70 2.29
6173 12041 1.699730 TCACGATGGGGACGACATAT 58.300 50.000 0.00 0.00 34.70 1.78
6174 12042 2.866351 TCACGATGGGGACGACATATA 58.134 47.619 0.00 0.00 34.70 0.86
6175 12043 3.427573 TCACGATGGGGACGACATATAT 58.572 45.455 0.00 0.00 34.70 0.86
6176 12044 4.591929 TCACGATGGGGACGACATATATA 58.408 43.478 0.00 0.00 34.70 0.86
6177 12045 4.638865 TCACGATGGGGACGACATATATAG 59.361 45.833 0.00 0.00 34.70 1.31
6178 12046 4.398358 CACGATGGGGACGACATATATAGT 59.602 45.833 0.00 0.00 34.70 2.12
6179 12047 4.639310 ACGATGGGGACGACATATATAGTC 59.361 45.833 0.00 6.61 34.70 2.59
6180 12048 4.638865 CGATGGGGACGACATATATAGTCA 59.361 45.833 13.61 0.36 35.77 3.41
6181 12049 5.220873 CGATGGGGACGACATATATAGTCAG 60.221 48.000 13.61 9.54 35.77 3.51
6182 12050 4.341487 TGGGGACGACATATATAGTCAGG 58.659 47.826 13.61 4.34 35.77 3.86
6183 12051 4.202641 TGGGGACGACATATATAGTCAGGT 60.203 45.833 13.61 6.55 35.77 4.00
6184 12052 4.398673 GGGGACGACATATATAGTCAGGTC 59.601 50.000 13.61 12.14 35.77 3.85
6188 12056 5.624344 CGACATATATAGTCAGGTCGGTT 57.376 43.478 11.28 0.00 42.97 4.44
6189 12057 5.629097 CGACATATATAGTCAGGTCGGTTC 58.371 45.833 11.28 0.00 42.97 3.62
6190 12058 5.180680 CGACATATATAGTCAGGTCGGTTCA 59.819 44.000 11.28 0.00 42.97 3.18
6191 12059 6.576662 ACATATATAGTCAGGTCGGTTCAG 57.423 41.667 0.00 0.00 0.00 3.02
6192 12060 5.047943 ACATATATAGTCAGGTCGGTTCAGC 60.048 44.000 0.00 0.00 0.00 4.26
6193 12061 0.456221 ATAGTCAGGTCGGTTCAGCG 59.544 55.000 0.00 0.00 0.00 5.18
6194 12062 0.607217 TAGTCAGGTCGGTTCAGCGA 60.607 55.000 0.00 0.00 0.00 4.93
6195 12063 1.215647 GTCAGGTCGGTTCAGCGAT 59.784 57.895 4.16 0.00 0.00 4.58
6196 12064 0.389948 GTCAGGTCGGTTCAGCGATT 60.390 55.000 4.16 0.00 0.00 3.34
6197 12065 1.135199 GTCAGGTCGGTTCAGCGATTA 60.135 52.381 4.16 0.00 0.00 1.75
6198 12066 1.135199 TCAGGTCGGTTCAGCGATTAC 60.135 52.381 4.16 0.00 0.00 1.89
6199 12067 1.135083 CAGGTCGGTTCAGCGATTACT 60.135 52.381 4.16 1.46 0.00 2.24
6200 12068 1.135083 AGGTCGGTTCAGCGATTACTG 60.135 52.381 4.16 0.00 39.12 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
157 160 2.666596 CTAGGGGTTGCATCCTCCGC 62.667 65.000 10.22 8.12 34.75 5.54
372 377 1.001641 GCCTGGTGTTGCATCCTCT 60.002 57.895 0.00 0.00 0.00 3.69
395 400 1.889105 CGGTGGGAGATGAATGGCG 60.889 63.158 0.00 0.00 0.00 5.69
435 441 4.227134 CGGGGCTCGATCTGGGTG 62.227 72.222 0.00 0.00 42.43 4.61
504 511 2.486370 CCAGGAGCTGATCTACTCGAGA 60.486 54.545 21.68 0.00 32.20 4.04
525 532 2.282180 TTCCTCCCCTTTGCGTGC 60.282 61.111 0.00 0.00 0.00 5.34
569 579 3.411351 CGTTGGTTCTCCGCACGG 61.411 66.667 1.73 1.73 38.53 4.94
605 615 2.356278 GGATCTGCTGGGTGGCAA 59.644 61.111 0.00 0.00 41.94 4.52
688 717 6.488006 CCGGGTCATTTCTATTCATCTCAAAT 59.512 38.462 0.00 0.00 0.00 2.32
689 718 5.822519 CCGGGTCATTTCTATTCATCTCAAA 59.177 40.000 0.00 0.00 0.00 2.69
690 719 5.104527 ACCGGGTCATTTCTATTCATCTCAA 60.105 40.000 6.32 0.00 0.00 3.02
691 720 4.408921 ACCGGGTCATTTCTATTCATCTCA 59.591 41.667 6.32 0.00 0.00 3.27
692 721 4.962155 ACCGGGTCATTTCTATTCATCTC 58.038 43.478 6.32 0.00 0.00 2.75
693 722 4.501571 CGACCGGGTCATTTCTATTCATCT 60.502 45.833 25.80 0.00 32.09 2.90
694 723 3.741344 CGACCGGGTCATTTCTATTCATC 59.259 47.826 25.80 0.00 32.09 2.92
695 724 3.134081 ACGACCGGGTCATTTCTATTCAT 59.866 43.478 25.80 0.00 32.09 2.57
696 725 2.498481 ACGACCGGGTCATTTCTATTCA 59.502 45.455 25.80 0.00 32.09 2.57
697 726 3.175109 ACGACCGGGTCATTTCTATTC 57.825 47.619 25.80 0.00 32.09 1.75
698 727 3.956199 TCTACGACCGGGTCATTTCTATT 59.044 43.478 25.80 3.02 32.09 1.73
699 728 3.559069 TCTACGACCGGGTCATTTCTAT 58.441 45.455 25.80 5.44 32.09 1.98
703 732 1.472728 GCATCTACGACCGGGTCATTT 60.473 52.381 25.80 12.28 32.09 2.32
706 735 1.379443 AGCATCTACGACCGGGTCA 60.379 57.895 25.80 7.67 32.09 4.02
708 737 3.522808 GAGCATCTACGACCGGGT 58.477 61.111 6.32 0.00 0.00 5.28
739 768 1.450211 CCACTTCACCGGGTGTTCT 59.550 57.895 25.53 7.18 34.79 3.01
741 770 2.203294 GCCACTTCACCGGGTGTT 60.203 61.111 25.53 9.64 34.79 3.32
841 877 3.627218 GCGTCCGTGGAATAGCGC 61.627 66.667 0.00 0.00 38.15 5.92
870 930 2.728817 GATCGGACGGCTGGTAGG 59.271 66.667 0.00 0.00 0.00 3.18
922 1012 4.394712 CGGCTTGCTTCCGGGAGT 62.395 66.667 12.53 0.00 42.99 3.85
971 1061 1.221466 CGCTCGGCTTGACTTGAACA 61.221 55.000 0.00 0.00 0.00 3.18
972 1062 1.493311 CGCTCGGCTTGACTTGAAC 59.507 57.895 0.00 0.00 0.00 3.18
974 1064 2.738521 GCGCTCGGCTTGACTTGA 60.739 61.111 0.00 0.00 39.11 3.02
990 1080 2.125793 GTTCGTCCCCTACACGGC 60.126 66.667 0.00 0.00 37.85 5.68
1015 1111 3.668656 CGACGATTTCTTTCTTTTTGGCC 59.331 43.478 0.00 0.00 0.00 5.36
1032 1128 1.296755 CTGTCCTCTTCCGACGACGA 61.297 60.000 9.28 0.00 42.66 4.20
1034 1130 0.959372 TCCTGTCCTCTTCCGACGAC 60.959 60.000 0.00 0.00 32.68 4.34
1035 1131 0.677098 CTCCTGTCCTCTTCCGACGA 60.677 60.000 0.00 0.00 32.68 4.20
1036 1132 1.658686 CCTCCTGTCCTCTTCCGACG 61.659 65.000 0.00 0.00 32.68 5.12
1037 1133 1.324005 CCCTCCTGTCCTCTTCCGAC 61.324 65.000 0.00 0.00 0.00 4.79
1050 1146 0.044244 TCGGATTTCTTCCCCCTCCT 59.956 55.000 0.00 0.00 42.06 3.69
1278 1402 2.106332 GATGCGTGGTACGGGGAG 59.894 66.667 3.41 0.00 42.82 4.30
1279 1403 3.829044 CGATGCGTGGTACGGGGA 61.829 66.667 3.41 0.00 42.82 4.81
1305 1429 1.682451 CGGCTCGGGGGTGAAGATTA 61.682 60.000 0.00 0.00 0.00 1.75
1327 1452 2.187424 GCAGAGGCAGAGGCAGAG 59.813 66.667 0.00 0.00 43.71 3.35
1328 1453 3.397439 GGCAGAGGCAGAGGCAGA 61.397 66.667 0.00 0.00 43.71 4.26
1329 1454 3.388703 GAGGCAGAGGCAGAGGCAG 62.389 68.421 0.00 0.00 43.71 4.85
1330 1455 3.397439 GAGGCAGAGGCAGAGGCA 61.397 66.667 0.00 0.00 43.71 4.75
1331 1456 3.082701 AGAGGCAGAGGCAGAGGC 61.083 66.667 0.00 0.00 43.71 4.70
1332 1457 2.901813 CAGAGGCAGAGGCAGAGG 59.098 66.667 0.00 0.00 43.71 3.69
1333 1458 2.187424 GCAGAGGCAGAGGCAGAG 59.813 66.667 0.00 0.00 43.71 3.35
1334 1459 3.397439 GGCAGAGGCAGAGGCAGA 61.397 66.667 0.00 0.00 43.71 4.26
1335 1460 3.388703 GAGGCAGAGGCAGAGGCAG 62.389 68.421 0.00 0.00 43.71 4.85
1336 1461 3.397439 GAGGCAGAGGCAGAGGCA 61.397 66.667 0.00 0.00 43.71 4.75
1337 1462 4.527583 CGAGGCAGAGGCAGAGGC 62.528 72.222 0.00 0.00 43.71 4.70
1338 1463 3.847602 CCGAGGCAGAGGCAGAGG 61.848 72.222 0.00 0.00 43.71 3.69
1423 1548 8.684386 ACAGATCACGAATCTAAGATAAGAGA 57.316 34.615 0.00 0.00 43.13 3.10
1426 1551 7.577107 TCGACAGATCACGAATCTAAGATAAG 58.423 38.462 7.09 0.00 43.13 1.73
1427 1552 7.226918 ACTCGACAGATCACGAATCTAAGATAA 59.773 37.037 9.95 0.00 43.13 1.75
1428 1553 6.706716 ACTCGACAGATCACGAATCTAAGATA 59.293 38.462 9.95 0.00 43.13 1.98
1429 1554 5.529430 ACTCGACAGATCACGAATCTAAGAT 59.471 40.000 9.95 0.00 43.13 2.40
1430 1555 4.876679 ACTCGACAGATCACGAATCTAAGA 59.123 41.667 9.95 4.97 43.13 2.10
1466 1594 0.761802 CTCCCCCATCTGGCTCTAAC 59.238 60.000 0.00 0.00 0.00 2.34
1502 1633 2.670934 CTCAGCCAAACCAGCGCT 60.671 61.111 2.64 2.64 34.64 5.92
1525 1656 2.693074 ACCAAAAAGCACACCAAGGTAG 59.307 45.455 0.00 0.00 0.00 3.18
1526 1657 2.741145 ACCAAAAAGCACACCAAGGTA 58.259 42.857 0.00 0.00 0.00 3.08
1527 1658 1.567357 ACCAAAAAGCACACCAAGGT 58.433 45.000 0.00 0.00 0.00 3.50
1528 1659 2.689553 AACCAAAAAGCACACCAAGG 57.310 45.000 0.00 0.00 0.00 3.61
1529 1660 4.111916 CAGTAACCAAAAAGCACACCAAG 58.888 43.478 0.00 0.00 0.00 3.61
1530 1661 3.118956 CCAGTAACCAAAAAGCACACCAA 60.119 43.478 0.00 0.00 0.00 3.67
1531 1662 2.428890 CCAGTAACCAAAAAGCACACCA 59.571 45.455 0.00 0.00 0.00 4.17
1532 1663 2.801699 GCCAGTAACCAAAAAGCACACC 60.802 50.000 0.00 0.00 0.00 4.16
1534 1665 2.103373 TGCCAGTAACCAAAAAGCACA 58.897 42.857 0.00 0.00 0.00 4.57
1535 1666 2.469826 GTGCCAGTAACCAAAAAGCAC 58.530 47.619 0.00 0.00 41.86 4.40
1579 3677 2.173669 CAGCAGACATAACGGCCGG 61.174 63.158 31.76 14.36 0.00 6.13
1629 3729 1.807377 GCGGCCAAGCAAATGCATTAT 60.807 47.619 13.39 0.00 45.16 1.28
1671 3771 0.940126 GCCAGCCATCACTCGTTATG 59.060 55.000 0.00 0.00 0.00 1.90
1679 3779 0.107312 AGATCTGTGCCAGCCATCAC 60.107 55.000 0.00 0.00 0.00 3.06
1701 3801 1.303888 CTGGTCACATGGCTTGGCT 60.304 57.895 5.31 0.00 0.00 4.75
1704 3804 2.422479 CAGAATCTGGTCACATGGCTTG 59.578 50.000 1.53 0.00 0.00 4.01
1757 3862 2.230130 CCCCCTTGGCAACTTCATTA 57.770 50.000 0.00 0.00 37.61 1.90
1787 3892 8.610248 TTTTAGACGAATCCACACTTGATTTA 57.390 30.769 0.00 0.00 32.74 1.40
1792 3897 7.464358 CCTAATTTTAGACGAATCCACACTTG 58.536 38.462 0.00 0.00 32.47 3.16
1806 3911 7.988937 ACATATGGATGGAGCCTAATTTTAGA 58.011 34.615 7.80 0.00 37.39 2.10
1946 4051 8.537223 GTGTCGCTAAATCACGAATTTAATCTA 58.463 33.333 0.00 0.00 38.92 1.98
1949 4054 6.092944 TGGTGTCGCTAAATCACGAATTTAAT 59.907 34.615 0.00 0.00 38.92 1.40
1950 4055 5.408909 TGGTGTCGCTAAATCACGAATTTAA 59.591 36.000 0.00 0.00 38.92 1.52
1951 4056 4.930405 TGGTGTCGCTAAATCACGAATTTA 59.070 37.500 0.00 0.00 40.47 1.40
1952 4057 3.749088 TGGTGTCGCTAAATCACGAATTT 59.251 39.130 0.00 0.00 40.47 1.82
1953 4058 3.331150 TGGTGTCGCTAAATCACGAATT 58.669 40.909 0.00 0.00 40.47 2.17
1970 4075 0.518636 CTCAATCGTGTTGGCTGGTG 59.481 55.000 4.06 0.00 0.00 4.17
1977 4082 2.807967 TCTTCTTGCCTCAATCGTGTTG 59.192 45.455 0.00 0.00 0.00 3.33
1991 4096 1.272147 CCCCAGTTTCCCCTCTTCTTG 60.272 57.143 0.00 0.00 0.00 3.02
1992 4097 1.076438 CCCCAGTTTCCCCTCTTCTT 58.924 55.000 0.00 0.00 0.00 2.52
2044 4149 1.561643 ATCAGAAGCACTCCCTTCGA 58.438 50.000 0.00 0.00 44.56 3.71
2053 4158 4.091509 CGTGTACTAACCAATCAGAAGCAC 59.908 45.833 0.00 0.00 0.00 4.40
2119 4233 3.932710 TCACGTTAGCAGCCAATTTAGAG 59.067 43.478 0.00 0.00 0.00 2.43
2120 4234 3.682858 GTCACGTTAGCAGCCAATTTAGA 59.317 43.478 0.00 0.00 0.00 2.10
2139 4253 1.071987 CAGAGTGGCCAAGCAGTCA 59.928 57.895 7.24 0.00 0.00 3.41
2261 4375 1.535204 AATCCCGCCTTGGCAACTTG 61.535 55.000 12.45 0.00 35.87 3.16
2283 4397 4.631377 CCGAATCTACACTTCATTTGCTCA 59.369 41.667 0.00 0.00 0.00 4.26
2323 4437 8.836413 TCTGTAGTAACCAGAAAAACAAATGAG 58.164 33.333 0.00 0.00 36.07 2.90
2404 4518 2.990479 CCACTCTGCACCCCTACC 59.010 66.667 0.00 0.00 0.00 3.18
2424 4538 4.626081 GATGCGGGATGGGTCGGG 62.626 72.222 0.00 0.00 0.00 5.14
2425 4539 4.626081 GGATGCGGGATGGGTCGG 62.626 72.222 0.00 0.00 0.00 4.79
2426 4540 3.814615 CTGGATGCGGGATGGGTCG 62.815 68.421 0.00 0.00 0.00 4.79
2437 4551 1.749634 AGATTCTGCAAAGCTGGATGC 59.250 47.619 11.36 11.36 42.86 3.91
2439 4553 3.361281 TGAGATTCTGCAAAGCTGGAT 57.639 42.857 4.50 0.00 0.00 3.41
2440 4554 2.865119 TGAGATTCTGCAAAGCTGGA 57.135 45.000 4.50 0.00 0.00 3.86
2442 4556 2.358267 GGGATGAGATTCTGCAAAGCTG 59.642 50.000 4.50 0.00 0.00 4.24
2444 4558 2.652590 AGGGATGAGATTCTGCAAAGC 58.347 47.619 0.00 0.00 0.00 3.51
2445 4559 4.267536 TGAAGGGATGAGATTCTGCAAAG 58.732 43.478 0.00 0.00 0.00 2.77
2446 4560 4.305539 TGAAGGGATGAGATTCTGCAAA 57.694 40.909 0.00 0.00 0.00 3.68
2447 4561 4.515028 ATGAAGGGATGAGATTCTGCAA 57.485 40.909 0.00 0.00 0.00 4.08
2448 4562 4.515028 AATGAAGGGATGAGATTCTGCA 57.485 40.909 0.00 0.00 0.00 4.41
2449 4563 4.450419 CGTAATGAAGGGATGAGATTCTGC 59.550 45.833 0.00 0.00 0.00 4.26
2450 4564 5.847304 TCGTAATGAAGGGATGAGATTCTG 58.153 41.667 0.00 0.00 0.00 3.02
2452 4566 6.090483 TCTCGTAATGAAGGGATGAGATTC 57.910 41.667 0.00 0.00 31.74 2.52
2454 4568 5.144100 ACTCTCGTAATGAAGGGATGAGAT 58.856 41.667 0.00 0.00 35.30 2.75
2455 4569 4.537751 ACTCTCGTAATGAAGGGATGAGA 58.462 43.478 0.00 0.00 34.76 3.27
2456 4570 4.927978 ACTCTCGTAATGAAGGGATGAG 57.072 45.455 0.00 0.00 0.00 2.90
2457 4571 5.677319 AAACTCTCGTAATGAAGGGATGA 57.323 39.130 0.00 0.00 0.00 2.92
2458 4572 6.806751 TCTAAACTCTCGTAATGAAGGGATG 58.193 40.000 0.00 0.00 0.00 3.51
2461 4575 5.044558 GCTCTAAACTCTCGTAATGAAGGG 58.955 45.833 0.00 0.00 0.00 3.95
2463 4577 6.326375 ACAGCTCTAAACTCTCGTAATGAAG 58.674 40.000 0.00 0.00 0.00 3.02
2470 4584 3.150767 ACTGACAGCTCTAAACTCTCGT 58.849 45.455 1.25 0.00 0.00 4.18
2472 4586 8.541133 AAATAAACTGACAGCTCTAAACTCTC 57.459 34.615 1.25 0.00 0.00 3.20
2473 4587 8.778358 CAAAATAAACTGACAGCTCTAAACTCT 58.222 33.333 1.25 0.00 0.00 3.24
2475 4589 8.677148 TCAAAATAAACTGACAGCTCTAAACT 57.323 30.769 1.25 0.00 0.00 2.66
2476 4590 9.170584 GTTCAAAATAAACTGACAGCTCTAAAC 57.829 33.333 1.25 0.00 0.00 2.01
2477 4591 9.120538 AGTTCAAAATAAACTGACAGCTCTAAA 57.879 29.630 1.25 0.00 35.68 1.85
2478 4592 8.677148 AGTTCAAAATAAACTGACAGCTCTAA 57.323 30.769 1.25 0.00 35.68 2.10
2479 4593 9.772973 TTAGTTCAAAATAAACTGACAGCTCTA 57.227 29.630 1.25 0.00 37.52 2.43
2480 4594 8.560374 GTTAGTTCAAAATAAACTGACAGCTCT 58.440 33.333 1.25 0.00 40.81 4.09
2481 4595 8.560374 AGTTAGTTCAAAATAAACTGACAGCTC 58.440 33.333 1.25 0.00 42.51 4.09
2495 4609 8.018520 CGCATAACATGGTAAGTTAGTTCAAAA 58.981 33.333 0.00 0.00 35.18 2.44
2496 4610 7.361371 CCGCATAACATGGTAAGTTAGTTCAAA 60.361 37.037 0.00 0.00 35.18 2.69
2497 4611 6.092944 CCGCATAACATGGTAAGTTAGTTCAA 59.907 38.462 0.00 0.00 35.18 2.69
2498 4612 5.583061 CCGCATAACATGGTAAGTTAGTTCA 59.417 40.000 0.00 0.00 35.18 3.18
2500 4614 4.879545 CCCGCATAACATGGTAAGTTAGTT 59.120 41.667 0.00 0.00 35.18 2.24
2502 4616 4.510340 GTCCCGCATAACATGGTAAGTTAG 59.490 45.833 0.00 0.00 35.18 2.34
2503 4617 4.162698 AGTCCCGCATAACATGGTAAGTTA 59.837 41.667 0.00 0.00 36.06 2.24
2504 4618 3.054655 AGTCCCGCATAACATGGTAAGTT 60.055 43.478 0.00 0.00 0.00 2.66
2505 4619 2.504175 AGTCCCGCATAACATGGTAAGT 59.496 45.455 0.00 0.00 0.00 2.24
2506 4620 3.194005 AGTCCCGCATAACATGGTAAG 57.806 47.619 0.00 0.00 0.00 2.34
2507 4621 3.493699 GCTAGTCCCGCATAACATGGTAA 60.494 47.826 0.00 0.00 0.00 2.85
2508 4622 2.036733 GCTAGTCCCGCATAACATGGTA 59.963 50.000 0.00 0.00 0.00 3.25
2509 4623 1.202651 GCTAGTCCCGCATAACATGGT 60.203 52.381 0.00 0.00 0.00 3.55
2510 4624 1.512926 GCTAGTCCCGCATAACATGG 58.487 55.000 0.00 0.00 0.00 3.66
2511 4625 1.139989 CGCTAGTCCCGCATAACATG 58.860 55.000 0.00 0.00 0.00 3.21
2512 4626 0.033504 CCGCTAGTCCCGCATAACAT 59.966 55.000 0.00 0.00 0.00 2.71
2513 4627 1.440060 CCGCTAGTCCCGCATAACA 59.560 57.895 0.00 0.00 0.00 2.41
2514 4628 1.300697 CCCGCTAGTCCCGCATAAC 60.301 63.158 0.00 0.00 0.00 1.89
2515 4629 1.456145 TCCCGCTAGTCCCGCATAA 60.456 57.895 0.00 0.00 0.00 1.90
2516 4630 2.196502 TCCCGCTAGTCCCGCATA 59.803 61.111 0.00 0.00 0.00 3.14
2517 4631 3.537874 GTCCCGCTAGTCCCGCAT 61.538 66.667 0.00 0.00 0.00 4.73
2530 4644 2.592861 GATGCAGATGCGGGTCCC 60.593 66.667 0.00 0.00 45.83 4.46
2531 4645 2.592861 GGATGCAGATGCGGGTCC 60.593 66.667 0.00 4.39 45.83 4.46
2532 4646 1.758440 TAGGGATGCAGATGCGGGTC 61.758 60.000 0.00 0.00 45.83 4.46
2533 4647 1.766059 TAGGGATGCAGATGCGGGT 60.766 57.895 0.00 0.00 45.83 5.28
2534 4648 1.302033 GTAGGGATGCAGATGCGGG 60.302 63.158 0.00 0.00 45.83 6.13
2535 4649 0.602106 CAGTAGGGATGCAGATGCGG 60.602 60.000 0.00 0.00 45.83 5.69
2536 4650 0.105593 ACAGTAGGGATGCAGATGCG 59.894 55.000 0.00 0.00 45.83 4.73
2537 4651 1.134280 ACACAGTAGGGATGCAGATGC 60.134 52.381 0.00 0.00 42.50 3.91
2538 4652 2.558378 CACACAGTAGGGATGCAGATG 58.442 52.381 0.00 0.00 0.00 2.90
2539 4653 1.487976 CCACACAGTAGGGATGCAGAT 59.512 52.381 0.00 0.00 0.00 2.90
2540 4654 0.904649 CCACACAGTAGGGATGCAGA 59.095 55.000 0.00 0.00 0.00 4.26
2541 4655 0.615331 ACCACACAGTAGGGATGCAG 59.385 55.000 0.00 0.00 0.00 4.41
2542 4656 0.324614 CACCACACAGTAGGGATGCA 59.675 55.000 0.00 0.00 0.00 3.96
2543 4657 1.026718 GCACCACACAGTAGGGATGC 61.027 60.000 0.00 0.66 0.00 3.91
2544 4658 0.392998 GGCACCACACAGTAGGGATG 60.393 60.000 0.00 0.00 0.00 3.51
2545 4659 1.991230 GGCACCACACAGTAGGGAT 59.009 57.895 0.00 0.00 0.00 3.85
2546 4660 3.478780 GGCACCACACAGTAGGGA 58.521 61.111 0.00 0.00 0.00 4.20
2591 4706 5.580691 CGCTGGTCTCACTAAATCACAAATA 59.419 40.000 0.00 0.00 0.00 1.40
2632 4747 1.907240 CTCCCCAAATTCCCCTCCTA 58.093 55.000 0.00 0.00 0.00 2.94
2699 4815 4.248058 CTGACCAATCAAAAGCATTTCCC 58.752 43.478 0.00 0.00 37.28 3.97
2779 4895 3.328382 TTAACAAGTATGCCGAGTGCT 57.672 42.857 0.00 0.00 42.00 4.40
3242 5360 9.657419 ATGATGTAAATATCACGATGCTGAATA 57.343 29.630 0.00 0.00 39.68 1.75
3387 5509 2.673368 GTCATCTAGACAAACAAGCCCG 59.327 50.000 0.00 0.00 46.77 6.13
3564 5691 8.515414 ACAGTTAAGTTCAAGGAAGCAAATATC 58.485 33.333 0.00 0.00 0.00 1.63
3737 6063 6.481313 CACCGTGATGATATTGAGAGACAATT 59.519 38.462 0.00 0.00 45.60 2.32
3755 6081 0.682292 TGGAACTGCATACACCGTGA 59.318 50.000 5.28 0.00 0.00 4.35
3758 6084 2.083774 ACAATGGAACTGCATACACCG 58.916 47.619 0.00 0.00 0.00 4.94
3777 6106 7.251704 ACAACATATAGCTATCTGCACAAAC 57.748 36.000 16.72 0.00 45.94 2.93
3784 6113 4.917998 ACGCGAACAACATATAGCTATCTG 59.082 41.667 15.93 13.39 0.00 2.90
3799 6128 1.270412 ACCCAGTCATTAACGCGAACA 60.270 47.619 15.93 0.00 0.00 3.18
3800 6129 1.435577 ACCCAGTCATTAACGCGAAC 58.564 50.000 15.93 0.51 0.00 3.95
3940 6282 6.650427 AAGAAGGGGAACATTACAACTTTC 57.350 37.500 0.00 0.00 32.27 2.62
3974 6321 2.213499 CCGGTCAATGGTATTGAGAGC 58.787 52.381 4.59 0.00 0.00 4.09
3996 6343 3.075882 TGGGGAAACAGAATCATCTTGGT 59.924 43.478 0.00 0.00 32.03 3.67
4081 6430 4.057432 CAACCGGAAAACAGCAATTCATT 58.943 39.130 9.46 0.00 0.00 2.57
4123 6472 7.919690 TGCTTCTGCATAATTCATACTTGTAC 58.080 34.615 0.00 0.00 45.31 2.90
4155 6504 4.180817 GGCCTATGTTTAAATTGCGCTTT 58.819 39.130 9.73 4.14 0.00 3.51
4375 6741 5.296151 ACATGAGAGTCAAGAAAACAGGA 57.704 39.130 0.00 0.00 0.00 3.86
4950 7496 1.860676 TTGACGTCTACAGTGTTGCC 58.139 50.000 17.92 0.00 0.00 4.52
5315 7873 0.884704 TCGGAAGAGCAGCAACAACC 60.885 55.000 0.00 0.00 34.84 3.77
5639 11489 1.492176 ACTGGTGGAATCAGCCATAGG 59.508 52.381 0.00 0.00 40.68 2.57
5640 11490 4.422073 TTACTGGTGGAATCAGCCATAG 57.578 45.455 0.00 0.00 40.68 2.23
5643 11493 3.517296 TTTTACTGGTGGAATCAGCCA 57.483 42.857 0.00 0.00 40.42 4.75
5667 11517 4.447389 GCTTATTGTGTTCCGCAAAAATGT 59.553 37.500 0.00 0.00 37.41 2.71
5714 11567 4.929819 TCATCTTGCCATGATCATTTGG 57.070 40.909 5.16 8.30 36.03 3.28
5731 11584 6.320672 ACCAAAGAAATCATCAGGTCATCATC 59.679 38.462 0.00 0.00 0.00 2.92
5759 11617 5.952347 TGCACATATATAGTCTCGATTCCCT 59.048 40.000 0.00 0.00 0.00 4.20
5786 11646 0.482446 TGATGGTGGGAAAACTGCCT 59.518 50.000 0.00 0.00 0.00 4.75
5803 11663 4.321082 CCAACACATGTATGCATTGTGTGA 60.321 41.667 27.73 0.00 41.64 3.58
5893 11754 8.138074 TCACAAATTCGTTGAACCAAAATATGA 58.862 29.630 0.00 0.00 39.87 2.15
5903 11764 3.347958 TGGCTCACAAATTCGTTGAAC 57.652 42.857 0.00 0.00 39.87 3.18
5908 11769 3.941483 CCTCTATTGGCTCACAAATTCGT 59.059 43.478 0.00 0.00 43.46 3.85
5934 11795 2.111251 GGGTCCCTCTATTGGCGC 59.889 66.667 0.00 0.00 0.00 6.53
5935 11796 2.421739 CGGGTCCCTCTATTGGCG 59.578 66.667 6.29 0.00 0.00 5.69
5936 11797 2.111251 GCGGGTCCCTCTATTGGC 59.889 66.667 6.29 0.00 0.00 4.52
5937 11798 1.749033 GAGCGGGTCCCTCTATTGG 59.251 63.158 6.29 0.00 0.00 3.16
5938 11799 1.749033 GGAGCGGGTCCCTCTATTG 59.251 63.158 15.31 0.00 39.88 1.90
5939 11800 4.297207 GGAGCGGGTCCCTCTATT 57.703 61.111 15.31 0.00 39.88 1.73
5946 11807 2.670148 ATGAACCAGGAGCGGGTCC 61.670 63.158 18.33 18.33 42.62 4.46
5947 11808 1.450312 CATGAACCAGGAGCGGGTC 60.450 63.158 0.00 0.00 43.67 4.46
5948 11809 1.779061 AACATGAACCAGGAGCGGGT 61.779 55.000 0.00 0.00 41.41 5.28
5949 11810 1.002134 AACATGAACCAGGAGCGGG 60.002 57.895 0.00 0.00 0.00 6.13
5950 11811 0.321564 TCAACATGAACCAGGAGCGG 60.322 55.000 0.00 0.00 0.00 5.52
5951 11812 1.522668 TTCAACATGAACCAGGAGCG 58.477 50.000 0.00 0.00 30.26 5.03
5963 11829 2.780010 CCCCTCCCATCTAGTTCAACAT 59.220 50.000 0.00 0.00 0.00 2.71
5972 11838 0.271927 ATTGGCTCCCCTCCCATCTA 59.728 55.000 0.00 0.00 0.00 1.98
5983 11850 2.713708 AGGAAATCCCTCTATTGGCTCC 59.286 50.000 0.00 0.00 43.31 4.70
5989 11856 5.491078 TGGTACAACAGGAAATCCCTCTATT 59.509 40.000 0.00 0.00 38.54 1.73
6009 11876 1.823169 GCACTCCTCCCGTGTTGGTA 61.823 60.000 0.00 0.00 34.91 3.25
6017 11884 1.445716 CGGTACTAGCACTCCTCCCG 61.446 65.000 0.00 0.00 0.00 5.14
6032 11899 3.791953 TTCCTTCCAATTGTTCCGGTA 57.208 42.857 0.00 0.00 0.00 4.02
6069 11936 4.475051 TCAAAATCCGACGAATCCCTTA 57.525 40.909 0.00 0.00 0.00 2.69
6070 11937 3.343941 TCAAAATCCGACGAATCCCTT 57.656 42.857 0.00 0.00 0.00 3.95
6076 11943 8.126074 CCATATTTTACATCAAAATCCGACGAA 58.874 33.333 0.00 0.00 44.08 3.85
6078 11945 6.855914 CCCATATTTTACATCAAAATCCGACG 59.144 38.462 0.00 0.00 44.08 5.12
6099 11967 6.402222 GCGATTATCTTCTCAACTATCCCAT 58.598 40.000 0.00 0.00 0.00 4.00
6100 11968 5.279506 GGCGATTATCTTCTCAACTATCCCA 60.280 44.000 0.00 0.00 0.00 4.37
6132 12000 8.609478 GTGAATAAAAGGAAATAATTCGCGAA 57.391 30.769 25.66 25.66 36.36 4.70
6134 12002 7.066437 CGTGAATAAAAGGAAATAATTCGCG 57.934 36.000 12.87 12.87 46.99 5.87
6135 12003 8.682016 CATCGTGAATAAAAGGAAATAATTCGC 58.318 33.333 0.00 0.00 36.36 4.70
6136 12004 9.169468 CCATCGTGAATAAAAGGAAATAATTCG 57.831 33.333 0.00 0.00 36.36 3.34
6137 12005 9.463443 CCCATCGTGAATAAAAGGAAATAATTC 57.537 33.333 0.00 0.00 34.66 2.17
6138 12006 8.421002 CCCCATCGTGAATAAAAGGAAATAATT 58.579 33.333 0.00 0.00 0.00 1.40
6139 12007 7.782644 TCCCCATCGTGAATAAAAGGAAATAAT 59.217 33.333 0.00 0.00 0.00 1.28
6140 12008 7.067737 GTCCCCATCGTGAATAAAAGGAAATAA 59.932 37.037 0.00 0.00 0.00 1.40
6141 12009 6.544564 GTCCCCATCGTGAATAAAAGGAAATA 59.455 38.462 0.00 0.00 0.00 1.40
6142 12010 5.359860 GTCCCCATCGTGAATAAAAGGAAAT 59.640 40.000 0.00 0.00 0.00 2.17
6143 12011 4.703093 GTCCCCATCGTGAATAAAAGGAAA 59.297 41.667 0.00 0.00 0.00 3.13
6144 12012 4.266714 GTCCCCATCGTGAATAAAAGGAA 58.733 43.478 0.00 0.00 0.00 3.36
6145 12013 3.680475 CGTCCCCATCGTGAATAAAAGGA 60.680 47.826 0.00 0.00 0.00 3.36
6146 12014 2.612212 CGTCCCCATCGTGAATAAAAGG 59.388 50.000 0.00 0.00 0.00 3.11
6147 12015 3.308866 GTCGTCCCCATCGTGAATAAAAG 59.691 47.826 0.00 0.00 0.00 2.27
6148 12016 3.264104 GTCGTCCCCATCGTGAATAAAA 58.736 45.455 0.00 0.00 0.00 1.52
6149 12017 2.234168 TGTCGTCCCCATCGTGAATAAA 59.766 45.455 0.00 0.00 0.00 1.40
6150 12018 1.826096 TGTCGTCCCCATCGTGAATAA 59.174 47.619 0.00 0.00 0.00 1.40
6151 12019 1.476477 TGTCGTCCCCATCGTGAATA 58.524 50.000 0.00 0.00 0.00 1.75
6152 12020 0.830648 ATGTCGTCCCCATCGTGAAT 59.169 50.000 0.00 0.00 0.00 2.57
6153 12021 1.476477 TATGTCGTCCCCATCGTGAA 58.524 50.000 0.00 0.00 0.00 3.18
6154 12022 1.699730 ATATGTCGTCCCCATCGTGA 58.300 50.000 0.00 0.00 0.00 4.35
6155 12023 3.868757 ATATATGTCGTCCCCATCGTG 57.131 47.619 0.00 0.00 0.00 4.35
6156 12024 4.597004 ACTATATATGTCGTCCCCATCGT 58.403 43.478 0.00 0.00 0.00 3.73
6157 12025 4.638865 TGACTATATATGTCGTCCCCATCG 59.361 45.833 0.00 0.00 37.26 3.84
6158 12026 5.067936 CCTGACTATATATGTCGTCCCCATC 59.932 48.000 0.00 0.00 37.26 3.51
6159 12027 4.956700 CCTGACTATATATGTCGTCCCCAT 59.043 45.833 0.00 0.00 37.26 4.00
6160 12028 4.202641 ACCTGACTATATATGTCGTCCCCA 60.203 45.833 0.00 0.00 37.26 4.96
6161 12029 4.342359 ACCTGACTATATATGTCGTCCCC 58.658 47.826 0.00 0.00 37.26 4.81
6162 12030 4.094590 CGACCTGACTATATATGTCGTCCC 59.905 50.000 11.04 2.55 40.32 4.46
6163 12031 4.094590 CCGACCTGACTATATATGTCGTCC 59.905 50.000 15.62 4.71 42.79 4.79
6164 12032 4.694509 ACCGACCTGACTATATATGTCGTC 59.305 45.833 15.62 10.59 42.79 4.20
6165 12033 4.649692 ACCGACCTGACTATATATGTCGT 58.350 43.478 15.62 7.45 42.79 4.34
6166 12034 5.180680 TGAACCGACCTGACTATATATGTCG 59.819 44.000 11.90 11.90 43.64 4.35
6167 12035 6.570672 TGAACCGACCTGACTATATATGTC 57.429 41.667 0.00 2.38 35.21 3.06
6168 12036 5.047943 GCTGAACCGACCTGACTATATATGT 60.048 44.000 0.00 0.00 0.00 2.29
6169 12037 5.403246 GCTGAACCGACCTGACTATATATG 58.597 45.833 0.00 0.00 0.00 1.78
6170 12038 4.156190 CGCTGAACCGACCTGACTATATAT 59.844 45.833 0.00 0.00 0.00 0.86
6171 12039 3.501062 CGCTGAACCGACCTGACTATATA 59.499 47.826 0.00 0.00 0.00 0.86
6172 12040 2.293677 CGCTGAACCGACCTGACTATAT 59.706 50.000 0.00 0.00 0.00 0.86
6173 12041 1.674441 CGCTGAACCGACCTGACTATA 59.326 52.381 0.00 0.00 0.00 1.31
6174 12042 0.456221 CGCTGAACCGACCTGACTAT 59.544 55.000 0.00 0.00 0.00 2.12
6175 12043 0.607217 TCGCTGAACCGACCTGACTA 60.607 55.000 0.00 0.00 31.36 2.59
6176 12044 1.251527 ATCGCTGAACCGACCTGACT 61.252 55.000 0.00 0.00 40.40 3.41
6177 12045 0.389948 AATCGCTGAACCGACCTGAC 60.390 55.000 0.00 0.00 40.40 3.51
6178 12046 1.135199 GTAATCGCTGAACCGACCTGA 60.135 52.381 0.00 0.00 40.40 3.86
6179 12047 1.135083 AGTAATCGCTGAACCGACCTG 60.135 52.381 0.00 0.00 40.40 4.00
6180 12048 1.135083 CAGTAATCGCTGAACCGACCT 60.135 52.381 0.00 0.00 40.40 3.85
6181 12049 1.278238 CAGTAATCGCTGAACCGACC 58.722 55.000 0.00 0.00 40.40 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.