Multiple sequence alignment - TraesCS3D01G514700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G514700 chr3D 100.000 3763 0 0 1 3763 598159861 598163623 0.000000e+00 6950.0
1 TraesCS3D01G514700 chr3D 85.456 1052 143 9 2192 3238 597917196 597916150 0.000000e+00 1086.0
2 TraesCS3D01G514700 chr3D 84.950 1010 147 4 2194 3199 598079838 598080846 0.000000e+00 1018.0
3 TraesCS3D01G514700 chr3D 87.136 583 60 8 1115 1692 597924085 597923513 0.000000e+00 647.0
4 TraesCS3D01G514700 chr3D 82.872 759 76 32 919 1670 598037021 598037732 2.120000e-177 632.0
5 TraesCS3D01G514700 chr3D 84.165 581 80 7 1095 1670 598072679 598073252 1.700000e-153 553.0
6 TraesCS3D01G514700 chr3D 100.000 218 0 0 3966 4183 598163826 598164043 1.810000e-108 403.0
7 TraesCS3D01G514700 chr3D 91.329 173 14 1 3402 3573 598361359 598361531 6.990000e-58 235.0
8 TraesCS3D01G514700 chr3D 79.394 165 29 4 1213 1376 565819756 565819916 1.230000e-20 111.0
9 TraesCS3D01G514700 chr3A 93.410 1487 79 10 1910 3379 728321584 728323068 0.000000e+00 2185.0
10 TraesCS3D01G514700 chr3A 94.795 903 37 4 1022 1914 728320621 728321523 0.000000e+00 1399.0
11 TraesCS3D01G514700 chr3A 93.043 920 52 5 68 979 728319499 728320414 0.000000e+00 1334.0
12 TraesCS3D01G514700 chr3A 85.456 997 139 5 2204 3197 728100029 728101022 0.000000e+00 1033.0
13 TraesCS3D01G514700 chr3A 85.233 1009 141 6 2194 3197 728238467 728239472 0.000000e+00 1031.0
14 TraesCS3D01G514700 chr3A 83.528 1111 169 11 2240 3341 728011753 728012858 0.000000e+00 1026.0
15 TraesCS3D01G514700 chr3A 85.276 652 66 20 1093 1737 728007075 728007703 0.000000e+00 645.0
16 TraesCS3D01G514700 chr3A 84.682 581 76 6 1095 1670 728224984 728225556 6.070000e-158 568.0
17 TraesCS3D01G514700 chr3A 89.071 183 19 1 1510 1692 727761152 727760971 4.210000e-55 226.0
18 TraesCS3D01G514700 chr3A 83.750 240 30 6 3415 3648 181108195 181107959 7.040000e-53 219.0
19 TraesCS3D01G514700 chr3A 84.021 194 29 2 448 640 138489202 138489394 7.140000e-43 185.0
20 TraesCS3D01G514700 chr3A 100.000 62 0 0 1 62 728319453 728319514 9.500000e-22 115.0
21 TraesCS3D01G514700 chr3A 79.394 165 29 4 1213 1376 700215884 700215724 1.230000e-20 111.0
22 TraesCS3D01G514700 chr3B 92.508 1188 84 3 2193 3379 805256850 805258033 0.000000e+00 1696.0
23 TraesCS3D01G514700 chr3B 93.514 740 44 2 1 740 805253706 805254441 0.000000e+00 1098.0
24 TraesCS3D01G514700 chr3B 84.707 1007 151 3 2194 3197 805098991 805099997 0.000000e+00 1003.0
25 TraesCS3D01G514700 chr3B 82.538 1111 181 10 2240 3341 804976857 804977963 0.000000e+00 965.0
26 TraesCS3D01G514700 chr3B 90.616 682 56 4 1 679 805251821 805252497 0.000000e+00 898.0
27 TraesCS3D01G514700 chr3B 90.634 662 40 10 1022 1670 805255409 805256061 0.000000e+00 859.0
28 TraesCS3D01G514700 chr3B 83.993 581 81 7 1095 1670 805093858 805094431 7.910000e-152 547.0
29 TraesCS3D01G514700 chr3B 83.993 581 81 5 1095 1670 805118117 805118690 7.910000e-152 547.0
30 TraesCS3D01G514700 chr3B 83.993 581 81 5 1095 1670 805121381 805121954 7.910000e-152 547.0
31 TraesCS3D01G514700 chr3B 90.426 282 18 6 1056 1331 805252488 805252766 3.070000e-96 363.0
32 TraesCS3D01G514700 chr3B 88.446 251 19 3 739 979 805254960 805255210 1.140000e-75 294.0
33 TraesCS3D01G514700 chr3B 94.624 93 5 0 1822 1914 805256326 805256418 1.210000e-30 145.0
34 TraesCS3D01G514700 chr3B 81.560 141 24 2 4025 4163 805262225 805262365 9.500000e-22 115.0
35 TraesCS3D01G514700 chr3B 86.364 110 6 1 3648 3748 805260165 805260274 1.230000e-20 111.0
36 TraesCS3D01G514700 chr5D 86.420 243 23 8 3408 3648 451179541 451179307 1.490000e-64 257.0
37 TraesCS3D01G514700 chr5D 82.927 123 21 0 1215 1337 34051855 34051733 1.230000e-20 111.0
38 TraesCS3D01G514700 chr5D 82.353 119 21 0 1215 1333 34061347 34061229 2.060000e-18 104.0
39 TraesCS3D01G514700 chr1D 83.794 253 31 8 3402 3650 415765993 415766239 9.040000e-57 231.0
40 TraesCS3D01G514700 chr4D 83.966 237 33 4 3402 3637 64369818 64370050 5.440000e-54 222.0
41 TraesCS3D01G514700 chr4D 80.198 101 14 5 346 442 398868171 398868269 2.090000e-08 71.3
42 TraesCS3D01G514700 chr2D 82.833 233 31 8 3412 3641 601956369 601956595 2.550000e-47 200.0
43 TraesCS3D01G514700 chr2A 83.562 219 30 5 448 664 459017061 459017275 2.550000e-47 200.0
44 TraesCS3D01G514700 chr2A 82.158 241 35 6 3402 3641 598655295 598655062 2.550000e-47 200.0
45 TraesCS3D01G514700 chr5B 83.981 206 31 2 448 652 430321736 430321532 3.300000e-46 196.0
46 TraesCS3D01G514700 chr5B 81.224 245 35 9 3402 3641 542690064 542689826 1.990000e-43 187.0
47 TraesCS3D01G514700 chr2B 83.256 215 30 5 448 660 5365877 5366087 4.270000e-45 193.0
48 TraesCS3D01G514700 chr4A 82.511 223 33 5 448 668 110641433 110641215 1.530000e-44 191.0
49 TraesCS3D01G514700 chr5A 82.063 223 35 4 448 668 538101417 538101198 7.140000e-43 185.0
50 TraesCS3D01G514700 chr5A 84.348 115 18 0 1215 1329 22723977 22724091 3.420000e-21 113.0
51 TraesCS3D01G514700 chr7B 81.070 243 34 7 3413 3648 353635450 353635687 2.570000e-42 183.0
52 TraesCS3D01G514700 chr7B 83.158 95 14 2 350 443 554891823 554891916 7.450000e-13 86.1
53 TraesCS3D01G514700 chr7A 87.342 79 8 2 367 444 668862337 668862414 5.760000e-14 89.8
54 TraesCS3D01G514700 chr6B 87.013 77 8 2 367 442 549629503 549629428 7.450000e-13 86.1
55 TraesCS3D01G514700 chr6B 83.333 90 15 0 1562 1651 56200989 56201078 2.680000e-12 84.2
56 TraesCS3D01G514700 chr6A 87.013 77 8 2 367 442 511830018 511830093 7.450000e-13 86.1
57 TraesCS3D01G514700 chr1A 88.571 70 7 1 374 442 492175394 492175325 2.680000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G514700 chr3D 598159861 598164043 4182 False 3676.500000 6950 100.000000 1 4183 2 chr3D.!!$F6 4182
1 TraesCS3D01G514700 chr3D 597916150 597917196 1046 True 1086.000000 1086 85.456000 2192 3238 1 chr3D.!!$R1 1046
2 TraesCS3D01G514700 chr3D 598079838 598080846 1008 False 1018.000000 1018 84.950000 2194 3199 1 chr3D.!!$F4 1005
3 TraesCS3D01G514700 chr3D 597923513 597924085 572 True 647.000000 647 87.136000 1115 1692 1 chr3D.!!$R2 577
4 TraesCS3D01G514700 chr3D 598037021 598037732 711 False 632.000000 632 82.872000 919 1670 1 chr3D.!!$F2 751
5 TraesCS3D01G514700 chr3D 598072679 598073252 573 False 553.000000 553 84.165000 1095 1670 1 chr3D.!!$F3 575
6 TraesCS3D01G514700 chr3A 728319453 728323068 3615 False 1258.250000 2185 95.312000 1 3379 4 chr3A.!!$F7 3378
7 TraesCS3D01G514700 chr3A 728100029 728101022 993 False 1033.000000 1033 85.456000 2204 3197 1 chr3A.!!$F4 993
8 TraesCS3D01G514700 chr3A 728238467 728239472 1005 False 1031.000000 1031 85.233000 2194 3197 1 chr3A.!!$F6 1003
9 TraesCS3D01G514700 chr3A 728011753 728012858 1105 False 1026.000000 1026 83.528000 2240 3341 1 chr3A.!!$F3 1101
10 TraesCS3D01G514700 chr3A 728007075 728007703 628 False 645.000000 645 85.276000 1093 1737 1 chr3A.!!$F2 644
11 TraesCS3D01G514700 chr3A 728224984 728225556 572 False 568.000000 568 84.682000 1095 1670 1 chr3A.!!$F5 575
12 TraesCS3D01G514700 chr3B 805098991 805099997 1006 False 1003.000000 1003 84.707000 2194 3197 1 chr3B.!!$F3 1003
13 TraesCS3D01G514700 chr3B 804976857 804977963 1106 False 965.000000 965 82.538000 2240 3341 1 chr3B.!!$F1 1101
14 TraesCS3D01G514700 chr3B 805251821 805262365 10544 False 619.888889 1696 89.854667 1 4163 9 chr3B.!!$F5 4162
15 TraesCS3D01G514700 chr3B 805093858 805094431 573 False 547.000000 547 83.993000 1095 1670 1 chr3B.!!$F2 575
16 TraesCS3D01G514700 chr3B 805118117 805121954 3837 False 547.000000 547 83.993000 1095 1670 2 chr3B.!!$F4 575

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
478 2366 0.180406 CATGCACACCCTACCCCTAC 59.820 60.000 0.00 0.0 0.00 3.18 F
640 2533 0.322546 CACCCAGACTTAACCCTGGC 60.323 60.000 11.24 0.0 46.52 4.85 F
958 3516 0.462581 GAATCCTCGTGCTGGCATCA 60.463 55.000 0.00 0.0 0.00 3.07 F
1149 7155 0.674895 CCTCCTCCCTCACAAAAGCG 60.675 60.000 0.00 0.0 0.00 4.68 F
1675 7700 1.629353 TCCCGCCACAAGGTATTTACA 59.371 47.619 0.00 0.0 37.19 2.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2131 8453 0.322456 AATAAAGCCAGCGCACCAGA 60.322 50.000 11.47 0.00 37.52 3.86 R
2496 8873 1.214325 TCGCATACACTGGGACACG 59.786 57.895 0.00 0.00 41.49 4.49 R
2688 9065 0.956633 AGAAATGGCATGCGGCTATG 59.043 50.000 12.44 4.87 43.71 2.23 R
3035 9412 1.532868 CCACCTTCTTCTTCGCACAAG 59.467 52.381 0.00 0.00 0.00 3.16 R
3608 9998 0.034767 CCCTGGCTTCTGCTGAATCA 60.035 55.000 6.48 7.69 39.59 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 1953 4.682787 TGACCAATGCTTGATCTAGTACG 58.317 43.478 6.05 0.00 0.00 3.67
88 1974 1.212616 CCGATGCTTGATCTTCCGTC 58.787 55.000 0.00 0.00 0.00 4.79
127 2013 2.528127 ATCGTCACCCCCACACCA 60.528 61.111 0.00 0.00 0.00 4.17
183 2069 1.003839 TCACGCCCACTGGTGATTC 60.004 57.895 1.93 0.00 45.51 2.52
478 2366 0.180406 CATGCACACCCTACCCCTAC 59.820 60.000 0.00 0.00 0.00 3.18
502 2390 2.935238 GCACCTTCGATAAACTGAGCCA 60.935 50.000 0.00 0.00 0.00 4.75
513 2401 2.452295 ACTGAGCCAGCATATCATCG 57.548 50.000 2.50 0.00 34.37 3.84
515 2403 2.893489 ACTGAGCCAGCATATCATCGTA 59.107 45.455 2.50 0.00 34.37 3.43
583 2476 0.384309 CCTCCTACTGAACGCGCATA 59.616 55.000 5.73 0.00 0.00 3.14
625 2518 1.872952 GCAGGAAAAATGCAAACACCC 59.127 47.619 0.00 0.00 43.31 4.61
640 2533 0.322546 CACCCAGACTTAACCCTGGC 60.323 60.000 11.24 0.00 46.52 4.85
740 3153 9.793259 TGAGATAATTAAGCCCCAACTTATTAG 57.207 33.333 0.00 0.00 32.35 1.73
958 3516 0.462581 GAATCCTCGTGCTGGCATCA 60.463 55.000 0.00 0.00 0.00 3.07
980 3538 3.198635 ACGTATCCATCCATCCATCCATC 59.801 47.826 0.00 0.00 0.00 3.51
983 3541 2.651190 TCCATCCATCCATCCATCCAT 58.349 47.619 0.00 0.00 0.00 3.41
984 3542 3.817959 TCCATCCATCCATCCATCCATA 58.182 45.455 0.00 0.00 0.00 2.74
985 3543 4.386308 TCCATCCATCCATCCATCCATAT 58.614 43.478 0.00 0.00 0.00 1.78
987 3545 4.167307 CCATCCATCCATCCATCCATATCA 59.833 45.833 0.00 0.00 0.00 2.15
988 3546 5.340528 CCATCCATCCATCCATCCATATCAA 60.341 44.000 0.00 0.00 0.00 2.57
991 3549 5.103813 TCCATCCATCCATCCATATCAATCC 60.104 44.000 0.00 0.00 0.00 3.01
992 3550 4.868172 TCCATCCATCCATATCAATCCC 57.132 45.455 0.00 0.00 0.00 3.85
993 3551 4.185518 TCCATCCATCCATATCAATCCCA 58.814 43.478 0.00 0.00 0.00 4.37
994 3552 4.018141 TCCATCCATCCATATCAATCCCAC 60.018 45.833 0.00 0.00 0.00 4.61
995 3553 3.701205 TCCATCCATATCAATCCCACG 57.299 47.619 0.00 0.00 0.00 4.94
996 3554 3.247162 TCCATCCATATCAATCCCACGA 58.753 45.455 0.00 0.00 0.00 4.35
1011 3713 1.064505 CCACGATCAATGCGCTCATTT 59.935 47.619 9.73 0.00 40.74 2.32
1013 3715 3.242706 CCACGATCAATGCGCTCATTTAA 60.243 43.478 9.73 0.00 40.74 1.52
1014 3716 4.530388 CACGATCAATGCGCTCATTTAAT 58.470 39.130 9.73 0.00 40.74 1.40
1017 3719 3.988379 TCAATGCGCTCATTTAATCCC 57.012 42.857 9.73 0.00 40.74 3.85
1018 3720 3.286353 TCAATGCGCTCATTTAATCCCA 58.714 40.909 9.73 0.00 40.74 4.37
1019 3721 3.066621 TCAATGCGCTCATTTAATCCCAC 59.933 43.478 9.73 0.00 40.74 4.61
1020 3722 1.013596 TGCGCTCATTTAATCCCACG 58.986 50.000 9.73 0.00 0.00 4.94
1025 3747 2.814336 GCTCATTTAATCCCACGATCCC 59.186 50.000 0.00 0.00 0.00 3.85
1043 3771 3.373830 TCCCATCCAAATCCATCCAAAC 58.626 45.455 0.00 0.00 0.00 2.93
1062 3790 4.474226 AACAATGCTCACGTTTTCTCTC 57.526 40.909 0.00 0.00 0.00 3.20
1140 7146 2.063378 CAGGCACTCCTCCTCCCTC 61.063 68.421 0.00 0.00 41.93 4.30
1149 7155 0.674895 CCTCCTCCCTCACAAAAGCG 60.675 60.000 0.00 0.00 0.00 4.68
1401 7413 2.997897 GCTGACCTCGTCCCCACT 60.998 66.667 0.00 0.00 0.00 4.00
1675 7700 1.629353 TCCCGCCACAAGGTATTTACA 59.371 47.619 0.00 0.00 37.19 2.41
1705 7776 5.006358 ACAGACAAACAGTTAACAGTTAGCG 59.994 40.000 15.71 10.40 0.00 4.26
1758 7829 5.103000 CACACAAGTACAGGTAGCACTATC 58.897 45.833 0.00 0.00 0.00 2.08
1875 8023 6.820656 AGGATGAAACAACAATACAGCTCTAG 59.179 38.462 0.00 0.00 0.00 2.43
1978 8282 6.210287 GGGGGAAACATAGAGATACTATCG 57.790 45.833 0.00 0.00 39.50 2.92
2120 8442 7.642194 CGACTATGTTTTTGCTTAAACTTCACA 59.358 33.333 13.03 3.81 38.52 3.58
2131 8453 7.669427 TGCTTAAACTTCACAATTGGATCAAT 58.331 30.769 10.83 0.00 35.39 2.57
2139 8461 2.424601 ACAATTGGATCAATCTGGTGCG 59.575 45.455 10.83 0.00 32.43 5.34
2188 8510 5.010617 TCACCGACTATAGCATTAGCAATCA 59.989 40.000 0.00 0.00 45.49 2.57
2224 8598 7.502561 AGACTCACATTTAAGGTGCTTAGTTTT 59.497 33.333 4.76 0.00 36.22 2.43
2274 8651 2.036958 TCACCCAACGGCTGATTATG 57.963 50.000 0.00 0.00 0.00 1.90
2300 8677 7.601705 TCTTTCCAAATTTTCAGACCATTCT 57.398 32.000 0.00 0.00 0.00 2.40
2306 8683 7.723616 TCCAAATTTTCAGACCATTCTCAACTA 59.276 33.333 0.00 0.00 0.00 2.24
2435 8812 3.211045 GGCAAAGTGTTCTTCAGGTGTA 58.789 45.455 0.00 0.00 32.90 2.90
2496 8873 4.082081 TCCAAAAGATCATTGATGGTGTGC 60.082 41.667 3.32 0.00 0.00 4.57
2591 8968 3.133721 ACCAAACTTGTTTGCATTGGCTA 59.866 39.130 17.79 0.00 43.39 3.93
2666 9043 4.646945 TCGATGGATCAAGAAGAGCTAGTT 59.353 41.667 0.00 0.00 31.91 2.24
3087 9464 3.842820 CGAAGAGCAAGTGATCTCAAGA 58.157 45.455 0.00 0.00 40.30 3.02
3116 9493 1.280998 ACCCGGTGTATCAAGAAAGGG 59.719 52.381 0.00 0.00 43.03 3.95
3130 9507 0.469144 AAAGGGGGCTCTTCGCAAAA 60.469 50.000 0.00 0.00 41.67 2.44
3139 9516 3.438360 GCTCTTCGCAAAATATGGTTGG 58.562 45.455 2.52 0.00 38.92 3.77
3402 9785 9.840427 AAATTAATTATACATCTTACGCATGCC 57.160 29.630 13.15 0.00 0.00 4.40
3405 9788 0.878523 TACATCTTACGCATGCCGGC 60.879 55.000 22.73 22.73 42.52 6.13
3422 9805 2.976840 GCGATTGCGGCTTGGTTGA 61.977 57.895 0.00 0.00 38.16 3.18
3423 9806 1.135315 CGATTGCGGCTTGGTTGAG 59.865 57.895 0.00 0.00 0.00 3.02
3424 9807 1.508088 GATTGCGGCTTGGTTGAGG 59.492 57.895 0.00 0.00 0.00 3.86
3425 9808 2.548127 GATTGCGGCTTGGTTGAGGC 62.548 60.000 0.00 0.00 38.73 4.70
3429 9812 2.361737 GGCTTGGTTGAGGCCTCC 60.362 66.667 29.95 16.26 42.31 4.30
3430 9813 2.747855 GCTTGGTTGAGGCCTCCG 60.748 66.667 29.95 11.82 0.00 4.63
3432 9815 2.852075 TTGGTTGAGGCCTCCGGT 60.852 61.111 29.95 0.00 0.00 5.28
3434 9817 2.002018 TTGGTTGAGGCCTCCGGTTT 62.002 55.000 29.95 0.00 0.00 3.27
3435 9818 1.228459 GGTTGAGGCCTCCGGTTTT 60.228 57.895 29.95 0.00 0.00 2.43
3437 9820 1.450025 GTTGAGGCCTCCGGTTTTAG 58.550 55.000 29.95 0.00 0.00 1.85
3438 9821 1.002773 GTTGAGGCCTCCGGTTTTAGA 59.997 52.381 29.95 4.78 0.00 2.10
3439 9822 1.580059 TGAGGCCTCCGGTTTTAGAT 58.420 50.000 29.95 0.00 0.00 1.98
3441 9824 1.209747 GAGGCCTCCGGTTTTAGATGT 59.790 52.381 23.19 0.00 0.00 3.06
3442 9825 1.633945 AGGCCTCCGGTTTTAGATGTT 59.366 47.619 0.00 0.00 0.00 2.71
3443 9826 1.743394 GGCCTCCGGTTTTAGATGTTG 59.257 52.381 0.00 0.00 0.00 3.33
3444 9827 1.743394 GCCTCCGGTTTTAGATGTTGG 59.257 52.381 0.00 0.00 0.00 3.77
3445 9828 2.365582 CCTCCGGTTTTAGATGTTGGG 58.634 52.381 0.00 0.00 0.00 4.12
3446 9829 2.290705 CCTCCGGTTTTAGATGTTGGGT 60.291 50.000 0.00 0.00 0.00 4.51
3450 9833 4.038162 TCCGGTTTTAGATGTTGGGTTTTG 59.962 41.667 0.00 0.00 0.00 2.44
3451 9834 4.303282 CGGTTTTAGATGTTGGGTTTTGG 58.697 43.478 0.00 0.00 0.00 3.28
3452 9835 4.202172 CGGTTTTAGATGTTGGGTTTTGGT 60.202 41.667 0.00 0.00 0.00 3.67
3453 9836 5.053811 GGTTTTAGATGTTGGGTTTTGGTG 58.946 41.667 0.00 0.00 0.00 4.17
3456 9839 3.025322 AGATGTTGGGTTTTGGTGTGA 57.975 42.857 0.00 0.00 0.00 3.58
3459 9842 3.025322 TGTTGGGTTTTGGTGTGAGAT 57.975 42.857 0.00 0.00 0.00 2.75
3460 9843 2.955660 TGTTGGGTTTTGGTGTGAGATC 59.044 45.455 0.00 0.00 0.00 2.75
3462 9845 2.862541 TGGGTTTTGGTGTGAGATCTG 58.137 47.619 0.00 0.00 0.00 2.90
3463 9846 2.162681 GGGTTTTGGTGTGAGATCTGG 58.837 52.381 0.00 0.00 0.00 3.86
3464 9847 2.162681 GGTTTTGGTGTGAGATCTGGG 58.837 52.381 0.00 0.00 0.00 4.45
3465 9848 1.541588 GTTTTGGTGTGAGATCTGGGC 59.458 52.381 0.00 0.00 0.00 5.36
3466 9849 0.770499 TTTGGTGTGAGATCTGGGCA 59.230 50.000 0.00 0.00 0.00 5.36
3467 9850 0.325933 TTGGTGTGAGATCTGGGCAG 59.674 55.000 0.00 0.00 0.00 4.85
3468 9851 1.222936 GGTGTGAGATCTGGGCAGG 59.777 63.158 0.00 0.00 0.00 4.85
3469 9852 1.451028 GTGTGAGATCTGGGCAGGC 60.451 63.158 0.00 0.00 0.00 4.85
3470 9853 2.202987 GTGAGATCTGGGCAGGCG 60.203 66.667 0.00 0.00 0.00 5.52
3471 9854 3.473647 TGAGATCTGGGCAGGCGG 61.474 66.667 0.00 0.00 0.00 6.13
3483 9866 4.637771 AGGCGGCCTGAACAATAC 57.362 55.556 23.19 0.00 29.57 1.89
3484 9867 1.449601 AGGCGGCCTGAACAATACG 60.450 57.895 23.19 0.00 29.57 3.06
3485 9868 2.403586 GCGGCCTGAACAATACGC 59.596 61.111 0.00 0.00 40.19 4.42
3486 9869 2.395360 GCGGCCTGAACAATACGCA 61.395 57.895 0.00 0.00 45.57 5.24
3487 9870 1.423845 CGGCCTGAACAATACGCAC 59.576 57.895 0.00 0.00 0.00 5.34
3488 9871 1.800681 GGCCTGAACAATACGCACC 59.199 57.895 0.00 0.00 0.00 5.01
3489 9872 1.654023 GGCCTGAACAATACGCACCC 61.654 60.000 0.00 0.00 0.00 4.61
3492 9875 1.737793 CCTGAACAATACGCACCCTTC 59.262 52.381 0.00 0.00 0.00 3.46
3493 9876 2.422597 CTGAACAATACGCACCCTTCA 58.577 47.619 0.00 0.00 0.00 3.02
3494 9877 3.009723 CTGAACAATACGCACCCTTCAT 58.990 45.455 0.00 0.00 0.00 2.57
3495 9878 3.006940 TGAACAATACGCACCCTTCATC 58.993 45.455 0.00 0.00 0.00 2.92
3497 9880 3.066291 ACAATACGCACCCTTCATCAA 57.934 42.857 0.00 0.00 0.00 2.57
3498 9881 3.009723 ACAATACGCACCCTTCATCAAG 58.990 45.455 0.00 0.00 0.00 3.02
3499 9882 3.009723 CAATACGCACCCTTCATCAAGT 58.990 45.455 0.00 0.00 0.00 3.16
3500 9883 2.851263 TACGCACCCTTCATCAAGTT 57.149 45.000 0.00 0.00 0.00 2.66
3501 9884 1.238439 ACGCACCCTTCATCAAGTTG 58.762 50.000 0.00 0.00 0.00 3.16
3502 9885 1.202758 ACGCACCCTTCATCAAGTTGA 60.203 47.619 8.27 8.27 0.00 3.18
3503 9886 2.086869 CGCACCCTTCATCAAGTTGAT 58.913 47.619 12.75 12.75 37.65 2.57
3504 9887 3.270027 CGCACCCTTCATCAAGTTGATA 58.730 45.455 17.86 3.20 34.28 2.15
3505 9888 3.310774 CGCACCCTTCATCAAGTTGATAG 59.689 47.826 17.86 12.48 34.28 2.08
3506 9889 3.629398 GCACCCTTCATCAAGTTGATAGG 59.371 47.826 21.08 21.08 34.28 2.57
3507 9890 4.626287 GCACCCTTCATCAAGTTGATAGGA 60.626 45.833 26.50 15.88 34.28 2.94
3508 9891 5.121811 CACCCTTCATCAAGTTGATAGGAG 58.878 45.833 26.50 20.26 34.28 3.69
3509 9892 4.785376 ACCCTTCATCAAGTTGATAGGAGT 59.215 41.667 26.50 20.72 34.28 3.85
3511 9894 6.443849 ACCCTTCATCAAGTTGATAGGAGTAA 59.556 38.462 26.50 11.81 34.28 2.24
3513 9896 7.443575 CCCTTCATCAAGTTGATAGGAGTAATG 59.556 40.741 26.50 11.94 34.28 1.90
3514 9897 8.206867 CCTTCATCAAGTTGATAGGAGTAATGA 58.793 37.037 22.67 11.11 34.28 2.57
3515 9898 9.775854 CTTCATCAAGTTGATAGGAGTAATGAT 57.224 33.333 17.86 0.00 34.28 2.45
3524 9907 8.930760 GTTGATAGGAGTAATGATAGATGTTGC 58.069 37.037 0.00 0.00 0.00 4.17
3526 9909 5.894298 AGGAGTAATGATAGATGTTGCCA 57.106 39.130 0.00 0.00 0.00 4.92
3527 9910 6.252599 AGGAGTAATGATAGATGTTGCCAA 57.747 37.500 0.00 0.00 0.00 4.52
3530 9913 6.939163 GGAGTAATGATAGATGTTGCCAAGAT 59.061 38.462 0.00 0.00 0.00 2.40
3531 9914 7.094890 GGAGTAATGATAGATGTTGCCAAGATG 60.095 40.741 0.00 0.00 0.00 2.90
3532 9915 6.713903 AGTAATGATAGATGTTGCCAAGATGG 59.286 38.462 0.00 0.00 41.55 3.51
3534 9917 4.201657 TGATAGATGTTGCCAAGATGGTG 58.798 43.478 0.00 0.00 40.46 4.17
3535 9918 1.843368 AGATGTTGCCAAGATGGTGG 58.157 50.000 0.00 0.00 40.46 4.61
3542 9925 3.963733 CCAAGATGGTGGCTTCAGA 57.036 52.632 0.00 0.00 31.35 3.27
3543 9926 1.457346 CCAAGATGGTGGCTTCAGAC 58.543 55.000 0.00 0.00 31.35 3.51
3544 9927 1.004044 CCAAGATGGTGGCTTCAGACT 59.996 52.381 0.00 0.00 31.35 3.24
3545 9928 2.354259 CAAGATGGTGGCTTCAGACTC 58.646 52.381 0.00 0.00 0.00 3.36
3547 9930 2.194859 AGATGGTGGCTTCAGACTCAT 58.805 47.619 0.00 0.00 0.00 2.90
3550 9933 1.699083 TGGTGGCTTCAGACTCATTCA 59.301 47.619 0.00 0.00 0.00 2.57
3551 9934 2.306805 TGGTGGCTTCAGACTCATTCAT 59.693 45.455 0.00 0.00 0.00 2.57
3552 9935 2.681848 GGTGGCTTCAGACTCATTCATG 59.318 50.000 0.00 0.00 0.00 3.07
3555 9938 5.121811 GTGGCTTCAGACTCATTCATGTAT 58.878 41.667 0.00 0.00 0.00 2.29
3557 9940 6.763135 GTGGCTTCAGACTCATTCATGTATTA 59.237 38.462 0.00 0.00 0.00 0.98
3558 9941 6.763135 TGGCTTCAGACTCATTCATGTATTAC 59.237 38.462 0.00 0.00 0.00 1.89
3559 9942 6.989169 GGCTTCAGACTCATTCATGTATTACT 59.011 38.462 0.00 0.00 0.00 2.24
3561 9944 8.887717 GCTTCAGACTCATTCATGTATTACTTT 58.112 33.333 0.00 0.00 0.00 2.66
3573 9956 8.263940 TCATGTATTACTTTGTAAGGTCTTGC 57.736 34.615 0.00 0.00 0.00 4.01
3574 9957 7.335924 TCATGTATTACTTTGTAAGGTCTTGCC 59.664 37.037 0.00 0.00 37.58 4.52
3575 9958 5.640357 TGTATTACTTTGTAAGGTCTTGCCG 59.360 40.000 0.00 0.00 43.70 5.69
3576 9959 2.922740 ACTTTGTAAGGTCTTGCCGA 57.077 45.000 0.00 0.00 43.70 5.54
3577 9960 3.202829 ACTTTGTAAGGTCTTGCCGAA 57.797 42.857 0.00 0.00 43.70 4.30
3578 9961 3.751518 ACTTTGTAAGGTCTTGCCGAAT 58.248 40.909 0.00 0.00 43.70 3.34
3584 9967 7.925043 TTGTAAGGTCTTGCCGAATAATTAA 57.075 32.000 0.00 0.00 43.70 1.40
3586 9969 9.616156 TTGTAAGGTCTTGCCGAATAATTAATA 57.384 29.630 0.00 0.00 43.70 0.98
3606 9996 2.869233 AAATGGATGTATGCAACGCC 57.131 45.000 0.00 0.00 0.00 5.68
3607 9997 1.032014 AATGGATGTATGCAACGCCC 58.968 50.000 0.00 0.00 0.00 6.13
3608 9998 0.183492 ATGGATGTATGCAACGCCCT 59.817 50.000 0.00 0.00 0.00 5.19
3609 9999 0.747644 TGGATGTATGCAACGCCCTG 60.748 55.000 0.00 0.00 0.00 4.45
3612 10002 1.949525 GATGTATGCAACGCCCTGATT 59.050 47.619 0.00 0.00 0.00 2.57
3614 10004 1.339535 TGTATGCAACGCCCTGATTCA 60.340 47.619 0.00 0.00 0.00 2.57
3615 10005 1.331756 GTATGCAACGCCCTGATTCAG 59.668 52.381 6.70 6.70 0.00 3.02
3617 10007 2.334946 GCAACGCCCTGATTCAGCA 61.335 57.895 8.23 0.00 0.00 4.41
3618 10008 1.798735 CAACGCCCTGATTCAGCAG 59.201 57.895 8.23 3.14 35.66 4.24
3619 10009 0.674581 CAACGCCCTGATTCAGCAGA 60.675 55.000 8.23 0.00 38.14 4.26
3621 10011 0.392193 ACGCCCTGATTCAGCAGAAG 60.392 55.000 8.23 3.12 38.14 2.85
3622 10012 1.712977 CGCCCTGATTCAGCAGAAGC 61.713 60.000 8.23 0.00 40.49 3.86
3625 10015 1.380524 CCTGATTCAGCAGAAGCCAG 58.619 55.000 8.23 10.05 43.56 4.85
3626 10016 1.380524 CTGATTCAGCAGAAGCCAGG 58.619 55.000 4.56 0.00 43.56 4.45
3627 10017 0.034767 TGATTCAGCAGAAGCCAGGG 60.035 55.000 4.56 0.00 43.56 4.45
3628 10018 0.750911 GATTCAGCAGAAGCCAGGGG 60.751 60.000 0.00 0.00 43.56 4.79
3630 10020 2.045536 CAGCAGAAGCCAGGGGTC 60.046 66.667 0.00 0.00 43.56 4.46
3631 10021 2.530151 AGCAGAAGCCAGGGGTCA 60.530 61.111 0.00 0.00 43.56 4.02
3633 10023 1.452833 GCAGAAGCCAGGGGTCATC 60.453 63.158 0.00 0.00 33.58 2.92
3634 10024 1.225704 CAGAAGCCAGGGGTCATCC 59.774 63.158 0.00 0.00 0.00 3.51
3635 10025 1.083706 AGAAGCCAGGGGTCATCCT 59.916 57.895 0.00 0.00 37.71 3.24
3636 10026 0.985490 AGAAGCCAGGGGTCATCCTC 60.985 60.000 0.00 0.00 34.31 3.71
3637 10027 1.988982 GAAGCCAGGGGTCATCCTCC 61.989 65.000 0.00 0.00 33.94 4.30
3638 10028 2.367512 GCCAGGGGTCATCCTCCT 60.368 66.667 0.00 0.00 33.94 3.69
3639 10029 2.003548 GCCAGGGGTCATCCTCCTT 61.004 63.158 0.00 0.00 33.94 3.36
3640 10030 1.575447 GCCAGGGGTCATCCTCCTTT 61.575 60.000 0.00 0.00 33.94 3.11
3641 10031 1.893315 CCAGGGGTCATCCTCCTTTA 58.107 55.000 0.00 0.00 33.94 1.85
3642 10032 2.205342 CCAGGGGTCATCCTCCTTTAA 58.795 52.381 0.00 0.00 33.94 1.52
3645 10035 4.510205 CCAGGGGTCATCCTCCTTTAAAAA 60.510 45.833 0.00 0.00 33.94 1.94
3669 11915 6.689178 AATGTGTTTTCGTGTTATTGATGC 57.311 33.333 0.00 0.00 0.00 3.91
3675 11921 3.942539 TCGTGTTATTGATGCGATTGG 57.057 42.857 0.00 0.00 0.00 3.16
3683 11938 0.460109 TGATGCGATTGGTCTGACCG 60.460 55.000 21.15 10.62 42.58 4.79
3753 12008 8.970859 GAAATCTCATTTTCCTCTGGAGAATA 57.029 34.615 2.67 0.00 34.84 1.75
3754 12009 9.401058 GAAATCTCATTTTCCTCTGGAGAATAA 57.599 33.333 2.67 0.00 34.84 1.40
3755 12010 9.759473 AAATCTCATTTTCCTCTGGAGAATAAA 57.241 29.630 2.67 0.00 34.84 1.40
3998 13955 3.059982 CCTGCGAGAGGGTGTTGA 58.940 61.111 0.00 0.00 38.36 3.18
3999 13956 1.599047 CCTGCGAGAGGGTGTTGAT 59.401 57.895 0.00 0.00 38.36 2.57
4000 13957 0.460987 CCTGCGAGAGGGTGTTGATC 60.461 60.000 0.00 0.00 38.36 2.92
4001 13958 0.247460 CTGCGAGAGGGTGTTGATCA 59.753 55.000 0.00 0.00 0.00 2.92
4002 13959 0.904649 TGCGAGAGGGTGTTGATCAT 59.095 50.000 0.00 0.00 0.00 2.45
4003 13960 1.278985 TGCGAGAGGGTGTTGATCATT 59.721 47.619 0.00 0.00 0.00 2.57
4004 13961 2.290260 TGCGAGAGGGTGTTGATCATTT 60.290 45.455 0.00 0.00 0.00 2.32
4005 13962 2.096496 GCGAGAGGGTGTTGATCATTTG 59.904 50.000 0.00 0.00 0.00 2.32
4006 13963 2.096496 CGAGAGGGTGTTGATCATTTGC 59.904 50.000 0.00 0.00 0.00 3.68
4007 13964 3.350833 GAGAGGGTGTTGATCATTTGCT 58.649 45.455 0.00 0.00 0.00 3.91
4008 13965 3.350833 AGAGGGTGTTGATCATTTGCTC 58.649 45.455 0.00 0.00 0.00 4.26
4009 13966 3.009916 AGAGGGTGTTGATCATTTGCTCT 59.990 43.478 0.00 0.00 0.00 4.09
4010 13967 3.760684 GAGGGTGTTGATCATTTGCTCTT 59.239 43.478 0.00 0.00 0.00 2.85
4011 13968 4.154942 AGGGTGTTGATCATTTGCTCTTT 58.845 39.130 0.00 0.00 0.00 2.52
4012 13969 4.021719 AGGGTGTTGATCATTTGCTCTTTG 60.022 41.667 0.00 0.00 0.00 2.77
4013 13970 4.262164 GGGTGTTGATCATTTGCTCTTTGT 60.262 41.667 0.00 0.00 0.00 2.83
4014 13971 5.291971 GGTGTTGATCATTTGCTCTTTGTT 58.708 37.500 0.00 0.00 0.00 2.83
4015 13972 5.754890 GGTGTTGATCATTTGCTCTTTGTTT 59.245 36.000 0.00 0.00 0.00 2.83
4016 13973 6.292488 GGTGTTGATCATTTGCTCTTTGTTTG 60.292 38.462 0.00 0.00 0.00 2.93
4017 13974 5.234757 TGTTGATCATTTGCTCTTTGTTTGC 59.765 36.000 0.00 0.00 0.00 3.68
4018 13975 4.309099 TGATCATTTGCTCTTTGTTTGCC 58.691 39.130 0.00 0.00 0.00 4.52
4019 13976 3.110447 TCATTTGCTCTTTGTTTGCCC 57.890 42.857 0.00 0.00 0.00 5.36
4020 13977 2.699846 TCATTTGCTCTTTGTTTGCCCT 59.300 40.909 0.00 0.00 0.00 5.19
4021 13978 3.894427 TCATTTGCTCTTTGTTTGCCCTA 59.106 39.130 0.00 0.00 0.00 3.53
4022 13979 4.527816 TCATTTGCTCTTTGTTTGCCCTAT 59.472 37.500 0.00 0.00 0.00 2.57
4023 13980 4.519540 TTTGCTCTTTGTTTGCCCTATC 57.480 40.909 0.00 0.00 0.00 2.08
4028 13985 4.616835 GCTCTTTGTTTGCCCTATCACAAG 60.617 45.833 0.00 0.00 31.00 3.16
4058 14015 2.158623 TGTTGTGTCAGGGATGCTCTTT 60.159 45.455 0.00 0.00 0.00 2.52
4059 14016 2.189594 TGTGTCAGGGATGCTCTTTG 57.810 50.000 0.00 0.00 0.00 2.77
4062 14019 2.887152 GTGTCAGGGATGCTCTTTGTTT 59.113 45.455 0.00 0.00 0.00 2.83
4063 14020 3.057946 GTGTCAGGGATGCTCTTTGTTTC 60.058 47.826 0.00 0.00 0.00 2.78
4076 14034 0.034198 TTGTTTCCCTCGCGATCACA 59.966 50.000 10.36 5.56 0.00 3.58
4080 14038 0.108804 TTCCCTCGCGATCACAACTC 60.109 55.000 10.36 0.00 0.00 3.01
4083 14041 0.526524 CCTCGCGATCACAACTCTCC 60.527 60.000 10.36 0.00 0.00 3.71
4089 14047 1.135915 CGATCACAACTCTCCTGGGAG 59.864 57.143 10.19 10.19 43.21 4.30
4102 14060 3.689347 TCCTGGGAGAATTTCATGTGTG 58.311 45.455 0.00 0.00 0.00 3.82
4106 14064 4.074259 TGGGAGAATTTCATGTGTGTCTG 58.926 43.478 0.00 0.00 0.00 3.51
4113 14071 3.311486 TTCATGTGTGTCTGTATGCGA 57.689 42.857 0.00 0.00 0.00 5.10
4125 14083 4.392138 GTCTGTATGCGAGCCTAAAGTTTT 59.608 41.667 0.00 0.00 0.00 2.43
4127 14085 6.258068 GTCTGTATGCGAGCCTAAAGTTTTAT 59.742 38.462 0.00 0.00 0.00 1.40
4133 14091 5.583457 TGCGAGCCTAAAGTTTTATAGAACC 59.417 40.000 2.65 0.00 0.00 3.62
4138 14096 6.011893 AGCCTAAAGTTTTATAGAACCAGGGT 60.012 38.462 13.57 13.57 33.25 4.34
4160 14118 2.268076 CCGGCTCCACCCTTGTTTG 61.268 63.158 0.00 0.00 33.26 2.93
4161 14119 2.919494 CGGCTCCACCCTTGTTTGC 61.919 63.158 0.00 0.00 33.26 3.68
4163 14121 2.919494 GCTCCACCCTTGTTTGCCG 61.919 63.158 0.00 0.00 0.00 5.69
4164 14122 1.528309 CTCCACCCTTGTTTGCCGT 60.528 57.895 0.00 0.00 0.00 5.68
4165 14123 1.076632 TCCACCCTTGTTTGCCGTT 60.077 52.632 0.00 0.00 0.00 4.44
4166 14124 0.684805 TCCACCCTTGTTTGCCGTTT 60.685 50.000 0.00 0.00 0.00 3.60
4167 14125 0.529555 CCACCCTTGTTTGCCGTTTG 60.530 55.000 0.00 0.00 0.00 2.93
4168 14126 0.457851 CACCCTTGTTTGCCGTTTGA 59.542 50.000 0.00 0.00 0.00 2.69
4169 14127 1.068434 CACCCTTGTTTGCCGTTTGAT 59.932 47.619 0.00 0.00 0.00 2.57
4170 14128 2.294791 CACCCTTGTTTGCCGTTTGATA 59.705 45.455 0.00 0.00 0.00 2.15
4171 14129 3.056891 CACCCTTGTTTGCCGTTTGATAT 60.057 43.478 0.00 0.00 0.00 1.63
4172 14130 3.576550 ACCCTTGTTTGCCGTTTGATATT 59.423 39.130 0.00 0.00 0.00 1.28
4173 14131 4.039852 ACCCTTGTTTGCCGTTTGATATTT 59.960 37.500 0.00 0.00 0.00 1.40
4174 14132 4.994217 CCCTTGTTTGCCGTTTGATATTTT 59.006 37.500 0.00 0.00 0.00 1.82
4175 14133 5.468409 CCCTTGTTTGCCGTTTGATATTTTT 59.532 36.000 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 1953 1.212616 CGGAAGATCAAGCATCGGTC 58.787 55.000 0.00 0.00 36.50 4.79
88 1974 0.804989 GGCGTCTTCAACCAAGATGG 59.195 55.000 5.86 0.00 45.26 3.51
127 2013 0.611340 ACTCGGCCTCTTAACTCGGT 60.611 55.000 0.00 0.00 0.00 4.69
183 2069 4.202010 CCCTATGTAAAATTTGGCGGTCAG 60.202 45.833 0.00 0.00 0.00 3.51
420 2308 1.602237 GCCCGGTCCTGAGATTTCA 59.398 57.895 0.00 0.00 0.00 2.69
478 2366 2.854777 CTCAGTTTATCGAAGGTGCTCG 59.145 50.000 0.00 0.00 40.25 5.03
515 2403 8.357402 ACGCCTAAAATGACTTTGTAAAATCTT 58.643 29.630 0.00 0.00 0.00 2.40
534 2422 2.907910 GTTGACTACGAGACGCCTAA 57.092 50.000 0.00 0.00 0.00 2.69
583 2476 5.186797 TGCATTTATTTCAGGATTTCCGGTT 59.813 36.000 0.00 0.00 42.08 4.44
611 2504 5.356426 GTTAAGTCTGGGTGTTTGCATTTT 58.644 37.500 0.00 0.00 0.00 1.82
625 2518 1.002087 AGTTCGCCAGGGTTAAGTCTG 59.998 52.381 0.00 0.00 0.00 3.51
640 2533 4.262079 GGAAGTGGTATCATCCCTAGTTCG 60.262 50.000 0.00 0.00 0.00 3.95
650 2543 8.013667 AGAGTAATAAGGAGGAAGTGGTATCAT 58.986 37.037 0.00 0.00 0.00 2.45
651 2544 7.363031 AGAGTAATAAGGAGGAAGTGGTATCA 58.637 38.462 0.00 0.00 0.00 2.15
652 2545 7.039574 GGAGAGTAATAAGGAGGAAGTGGTATC 60.040 44.444 0.00 0.00 0.00 2.24
740 3153 1.084289 GGCCATGTCGGTTCTGTTAC 58.916 55.000 0.00 0.00 36.97 2.50
958 3516 2.619931 TGGATGGATGGATGGATACGT 58.380 47.619 0.00 0.00 42.51 3.57
980 3538 4.142534 GCATTGATCGTGGGATTGATATGG 60.143 45.833 0.80 0.00 31.51 2.74
983 3541 3.066380 CGCATTGATCGTGGGATTGATA 58.934 45.455 8.68 0.00 31.51 2.15
984 3542 1.875514 CGCATTGATCGTGGGATTGAT 59.124 47.619 8.68 0.00 31.51 2.57
985 3543 1.298602 CGCATTGATCGTGGGATTGA 58.701 50.000 8.68 0.00 31.51 2.57
987 3545 0.464373 AGCGCATTGATCGTGGGATT 60.464 50.000 11.47 3.88 31.51 3.01
988 3546 0.882042 GAGCGCATTGATCGTGGGAT 60.882 55.000 11.47 11.14 34.96 3.85
991 3549 0.659427 AATGAGCGCATTGATCGTGG 59.341 50.000 15.29 0.00 42.91 4.94
992 3550 2.463553 AAATGAGCGCATTGATCGTG 57.536 45.000 16.74 0.00 43.71 4.35
993 3551 4.319766 GGATTAAATGAGCGCATTGATCGT 60.320 41.667 16.74 3.06 43.71 3.73
994 3552 4.153986 GGATTAAATGAGCGCATTGATCG 58.846 43.478 16.74 0.00 43.71 3.69
995 3553 4.022935 TGGGATTAAATGAGCGCATTGATC 60.023 41.667 16.74 19.62 43.71 2.92
996 3554 3.890756 TGGGATTAAATGAGCGCATTGAT 59.109 39.130 16.74 13.18 43.71 2.57
1011 3713 2.110753 TGGATGGGATCGTGGGATTA 57.889 50.000 0.00 0.00 31.51 1.75
1013 3715 1.221635 TTTGGATGGGATCGTGGGAT 58.778 50.000 0.00 0.00 34.96 3.85
1014 3716 1.142870 GATTTGGATGGGATCGTGGGA 59.857 52.381 0.00 0.00 0.00 4.37
1017 3719 2.346766 TGGATTTGGATGGGATCGTG 57.653 50.000 0.00 0.00 0.00 4.35
1018 3720 2.224867 GGATGGATTTGGATGGGATCGT 60.225 50.000 0.00 0.00 0.00 3.73
1019 3721 2.224843 TGGATGGATTTGGATGGGATCG 60.225 50.000 0.00 0.00 0.00 3.69
1020 3722 3.530928 TGGATGGATTTGGATGGGATC 57.469 47.619 0.00 0.00 0.00 3.36
1025 3747 4.573201 GCATTGTTTGGATGGATTTGGATG 59.427 41.667 0.00 0.00 0.00 3.51
1043 3771 3.070018 AGGAGAGAAAACGTGAGCATTG 58.930 45.455 0.00 0.00 0.00 2.82
1062 3790 7.091443 CGTTGGGCTTTATTATAGAGTAGAGG 58.909 42.308 0.00 0.00 0.00 3.69
1140 7146 1.080569 GGCCACCATCGCTTTTGTG 60.081 57.895 0.00 0.00 0.00 3.33
1186 7198 4.680237 CCTGTTGCCACCGCTCGA 62.680 66.667 0.00 0.00 35.36 4.04
1201 7213 2.753029 GAACAGCAGCACCCTCCT 59.247 61.111 0.00 0.00 0.00 3.69
1204 7216 4.335647 CGGGAACAGCAGCACCCT 62.336 66.667 12.79 0.00 40.12 4.34
1386 7398 2.603473 CCAGTGGGGACGAGGTCA 60.603 66.667 0.00 0.00 40.01 4.02
1484 7497 2.506061 CCCTCCTCATCCTCCAGCG 61.506 68.421 0.00 0.00 0.00 5.18
1675 7700 9.609346 AACTGTTAACTGTTTGTCTGTTAGTAT 57.391 29.630 21.20 0.00 40.00 2.12
2120 8442 1.406539 GCGCACCAGATTGATCCAATT 59.593 47.619 0.30 0.00 33.90 2.32
2131 8453 0.322456 AATAAAGCCAGCGCACCAGA 60.322 50.000 11.47 0.00 37.52 3.86
2139 8461 9.678941 GATTAATAGGTACAAAATAAAGCCAGC 57.321 33.333 0.00 0.00 0.00 4.85
2224 8598 6.262944 GTGAGGATGCATGTGTATTATTTGGA 59.737 38.462 2.46 0.00 0.00 3.53
2274 8651 7.928167 AGAATGGTCTGAAAATTTGGAAAGAAC 59.072 33.333 0.00 0.00 30.83 3.01
2300 8677 3.500448 TCCAGTGGCATGTTTAGTTGA 57.500 42.857 3.51 0.00 0.00 3.18
2306 8683 3.285484 GAGATCATCCAGTGGCATGTTT 58.715 45.455 3.51 2.60 0.00 2.83
2435 8812 3.139077 GTCGTTGAAGGTGTTGAGGATT 58.861 45.455 0.00 0.00 0.00 3.01
2496 8873 1.214325 TCGCATACACTGGGACACG 59.786 57.895 0.00 0.00 41.49 4.49
2591 8968 1.302033 CCGTGCCTCTTGCTTGTCT 60.302 57.895 0.00 0.00 42.00 3.41
2666 9043 1.001764 CAAGCCCCATGCAGTCTCA 60.002 57.895 0.00 0.00 44.83 3.27
2688 9065 0.956633 AGAAATGGCATGCGGCTATG 59.043 50.000 12.44 4.87 43.71 2.23
3035 9412 1.532868 CCACCTTCTTCTTCGCACAAG 59.467 52.381 0.00 0.00 0.00 3.16
3076 9453 4.540824 GGTTGCTTTGTTCTTGAGATCAC 58.459 43.478 0.00 0.00 0.00 3.06
3087 9464 1.883926 GATACACCGGGTTGCTTTGTT 59.116 47.619 6.32 0.00 0.00 2.83
3130 9507 4.588528 AGTTCACAAGCAAACCAACCATAT 59.411 37.500 0.00 0.00 0.00 1.78
3139 9516 4.984161 ACATTATGCAGTTCACAAGCAAAC 59.016 37.500 0.00 0.00 42.15 2.93
3146 9523 6.179756 AGGTAATGACATTATGCAGTTCACA 58.820 36.000 10.99 0.00 0.00 3.58
3243 9620 6.882610 TCACTCATATGCAAAACAAGTCTT 57.117 33.333 0.00 0.00 0.00 3.01
3244 9625 6.488006 AGTTCACTCATATGCAAAACAAGTCT 59.512 34.615 0.00 0.00 0.00 3.24
3291 9672 6.138263 TGGAATTATGGAGAATTGGCAGAAT 58.862 36.000 0.00 0.00 0.00 2.40
3294 9676 6.415206 AATGGAATTATGGAGAATTGGCAG 57.585 37.500 0.00 0.00 32.46 4.85
3295 9677 6.811634 AAATGGAATTATGGAGAATTGGCA 57.188 33.333 0.00 0.00 33.67 4.92
3296 9678 6.870439 GCTAAATGGAATTATGGAGAATTGGC 59.130 38.462 0.00 0.00 33.67 4.52
3298 9680 8.853126 TCTGCTAAATGGAATTATGGAGAATTG 58.147 33.333 0.00 0.00 33.67 2.32
3379 9762 6.091577 CCGGCATGCGTAAGATGTATAATTAA 59.908 38.462 12.44 0.00 43.02 1.40
3382 9765 3.932710 CCGGCATGCGTAAGATGTATAAT 59.067 43.478 12.44 0.00 43.02 1.28
3383 9766 3.322369 CCGGCATGCGTAAGATGTATAA 58.678 45.455 12.44 0.00 43.02 0.98
3384 9767 2.929161 GCCGGCATGCGTAAGATGTATA 60.929 50.000 24.80 0.00 43.02 1.47
3387 9770 2.180204 GCCGGCATGCGTAAGATGT 61.180 57.895 24.80 0.00 43.02 3.06
3405 9788 1.135315 CTCAACCAAGCCGCAATCG 59.865 57.895 0.00 0.00 0.00 3.34
3408 9791 3.294493 GCCTCAACCAAGCCGCAA 61.294 61.111 0.00 0.00 0.00 4.85
3413 9796 2.747855 CGGAGGCCTCAACCAAGC 60.748 66.667 33.29 13.59 0.00 4.01
3414 9797 2.045926 CCGGAGGCCTCAACCAAG 60.046 66.667 33.29 16.00 46.14 3.61
3426 9809 3.067684 ACCCAACATCTAAAACCGGAG 57.932 47.619 9.46 0.00 0.00 4.63
3427 9810 3.512219 AACCCAACATCTAAAACCGGA 57.488 42.857 9.46 0.00 0.00 5.14
3429 9812 4.202172 ACCAAAACCCAACATCTAAAACCG 60.202 41.667 0.00 0.00 0.00 4.44
3430 9813 5.053811 CACCAAAACCCAACATCTAAAACC 58.946 41.667 0.00 0.00 0.00 3.27
3432 9815 5.422331 TCACACCAAAACCCAACATCTAAAA 59.578 36.000 0.00 0.00 0.00 1.52
3434 9817 4.537751 TCACACCAAAACCCAACATCTAA 58.462 39.130 0.00 0.00 0.00 2.10
3435 9818 4.141287 CTCACACCAAAACCCAACATCTA 58.859 43.478 0.00 0.00 0.00 1.98
3437 9820 2.955660 TCTCACACCAAAACCCAACATC 59.044 45.455 0.00 0.00 0.00 3.06
3438 9821 3.025322 TCTCACACCAAAACCCAACAT 57.975 42.857 0.00 0.00 0.00 2.71
3439 9822 2.516227 TCTCACACCAAAACCCAACA 57.484 45.000 0.00 0.00 0.00 3.33
3441 9824 3.221771 CAGATCTCACACCAAAACCCAA 58.778 45.455 0.00 0.00 0.00 4.12
3442 9825 2.488891 CCAGATCTCACACCAAAACCCA 60.489 50.000 0.00 0.00 0.00 4.51
3443 9826 2.162681 CCAGATCTCACACCAAAACCC 58.837 52.381 0.00 0.00 0.00 4.11
3444 9827 2.162681 CCCAGATCTCACACCAAAACC 58.837 52.381 0.00 0.00 0.00 3.27
3445 9828 1.541588 GCCCAGATCTCACACCAAAAC 59.458 52.381 0.00 0.00 0.00 2.43
3446 9829 1.144708 TGCCCAGATCTCACACCAAAA 59.855 47.619 0.00 0.00 0.00 2.44
3450 9833 1.222936 CCTGCCCAGATCTCACACC 59.777 63.158 0.00 0.00 0.00 4.16
3451 9834 1.451028 GCCTGCCCAGATCTCACAC 60.451 63.158 0.00 0.00 0.00 3.82
3452 9835 2.993008 GCCTGCCCAGATCTCACA 59.007 61.111 0.00 0.00 0.00 3.58
3453 9836 2.202987 CGCCTGCCCAGATCTCAC 60.203 66.667 0.00 0.00 0.00 3.51
3466 9849 1.449601 CGTATTGTTCAGGCCGCCT 60.450 57.895 5.94 5.94 0.00 5.52
3467 9850 3.098555 CGTATTGTTCAGGCCGCC 58.901 61.111 0.00 0.00 0.00 6.13
3468 9851 2.395360 TGCGTATTGTTCAGGCCGC 61.395 57.895 0.00 0.00 41.34 6.53
3469 9852 1.423845 GTGCGTATTGTTCAGGCCG 59.576 57.895 0.00 0.00 0.00 6.13
3470 9853 1.654023 GGGTGCGTATTGTTCAGGCC 61.654 60.000 0.00 0.00 0.00 5.19
3471 9854 0.676782 AGGGTGCGTATTGTTCAGGC 60.677 55.000 0.00 0.00 0.00 4.85
3473 9856 2.422597 TGAAGGGTGCGTATTGTTCAG 58.577 47.619 0.00 0.00 0.00 3.02
3477 9860 2.779755 TGATGAAGGGTGCGTATTGT 57.220 45.000 0.00 0.00 0.00 2.71
3478 9861 3.009723 ACTTGATGAAGGGTGCGTATTG 58.990 45.455 0.00 0.00 32.95 1.90
3479 9862 3.350219 ACTTGATGAAGGGTGCGTATT 57.650 42.857 0.00 0.00 32.95 1.89
3481 9864 2.037902 TCAACTTGATGAAGGGTGCGTA 59.962 45.455 0.00 0.00 32.95 4.42
3482 9865 1.202758 TCAACTTGATGAAGGGTGCGT 60.203 47.619 0.00 0.00 32.95 5.24
3483 9866 1.522668 TCAACTTGATGAAGGGTGCG 58.477 50.000 0.00 0.00 32.95 5.34
3484 9867 3.629398 CCTATCAACTTGATGAAGGGTGC 59.371 47.826 13.66 0.00 37.70 5.01
3485 9868 5.102953 TCCTATCAACTTGATGAAGGGTG 57.897 43.478 16.07 0.00 37.70 4.61
3486 9869 4.785376 ACTCCTATCAACTTGATGAAGGGT 59.215 41.667 16.07 11.70 37.70 4.34
3487 9870 5.365021 ACTCCTATCAACTTGATGAAGGG 57.635 43.478 16.07 11.75 37.70 3.95
3488 9871 8.206867 TCATTACTCCTATCAACTTGATGAAGG 58.793 37.037 13.66 12.78 37.70 3.46
3489 9872 9.775854 ATCATTACTCCTATCAACTTGATGAAG 57.224 33.333 13.66 10.17 37.70 3.02
3498 9881 8.930760 GCAACATCTATCATTACTCCTATCAAC 58.069 37.037 0.00 0.00 0.00 3.18
3499 9882 8.097038 GGCAACATCTATCATTACTCCTATCAA 58.903 37.037 0.00 0.00 0.00 2.57
3500 9883 7.235399 TGGCAACATCTATCATTACTCCTATCA 59.765 37.037 0.00 0.00 46.17 2.15
3501 9884 7.615403 TGGCAACATCTATCATTACTCCTATC 58.385 38.462 0.00 0.00 46.17 2.08
3502 9885 7.559335 TGGCAACATCTATCATTACTCCTAT 57.441 36.000 0.00 0.00 46.17 2.57
3503 9886 6.994421 TGGCAACATCTATCATTACTCCTA 57.006 37.500 0.00 0.00 46.17 2.94
3504 9887 5.894298 TGGCAACATCTATCATTACTCCT 57.106 39.130 0.00 0.00 46.17 3.69
3524 9907 1.004044 AGTCTGAAGCCACCATCTTGG 59.996 52.381 0.00 0.00 45.02 3.61
3526 9909 1.980765 TGAGTCTGAAGCCACCATCTT 59.019 47.619 0.00 0.00 0.00 2.40
3527 9910 1.649321 TGAGTCTGAAGCCACCATCT 58.351 50.000 0.00 0.00 0.00 2.90
3530 9913 1.699083 TGAATGAGTCTGAAGCCACCA 59.301 47.619 0.00 0.00 0.00 4.17
3531 9914 2.479566 TGAATGAGTCTGAAGCCACC 57.520 50.000 0.00 0.00 0.00 4.61
3532 9915 3.341823 ACATGAATGAGTCTGAAGCCAC 58.658 45.455 0.00 0.00 0.00 5.01
3534 9917 6.989169 AGTAATACATGAATGAGTCTGAAGCC 59.011 38.462 0.00 0.00 0.00 4.35
3535 9918 8.430801 AAGTAATACATGAATGAGTCTGAAGC 57.569 34.615 0.00 0.00 0.00 3.86
3537 9920 9.725019 ACAAAGTAATACATGAATGAGTCTGAA 57.275 29.630 0.00 0.00 0.00 3.02
3542 9925 9.959721 ACCTTACAAAGTAATACATGAATGAGT 57.040 29.630 0.00 0.00 0.00 3.41
3547 9930 8.726988 GCAAGACCTTACAAAGTAATACATGAA 58.273 33.333 0.00 0.00 0.00 2.57
3550 9933 6.315393 CGGCAAGACCTTACAAAGTAATACAT 59.685 38.462 0.00 0.00 35.61 2.29
3551 9934 5.640357 CGGCAAGACCTTACAAAGTAATACA 59.360 40.000 0.00 0.00 35.61 2.29
3552 9935 5.870978 TCGGCAAGACCTTACAAAGTAATAC 59.129 40.000 0.00 0.00 35.61 1.89
3555 9938 4.339872 TCGGCAAGACCTTACAAAGTAA 57.660 40.909 0.00 0.00 35.61 2.24
3557 9940 2.922740 TCGGCAAGACCTTACAAAGT 57.077 45.000 0.00 0.00 35.61 2.66
3558 9941 5.873179 TTATTCGGCAAGACCTTACAAAG 57.127 39.130 0.00 0.00 35.61 2.77
3559 9942 6.827586 AATTATTCGGCAAGACCTTACAAA 57.172 33.333 0.00 0.00 35.61 2.83
3561 9944 9.616156 TTATTAATTATTCGGCAAGACCTTACA 57.384 29.630 0.00 0.00 35.61 2.41
3565 9948 9.965824 CATTTTATTAATTATTCGGCAAGACCT 57.034 29.630 0.00 0.00 35.61 3.85
3566 9949 9.191995 CCATTTTATTAATTATTCGGCAAGACC 57.808 33.333 0.00 0.00 0.00 3.85
3567 9950 9.959749 TCCATTTTATTAATTATTCGGCAAGAC 57.040 29.630 0.00 0.00 0.00 3.01
3584 9967 4.261994 GGGCGTTGCATACATCCATTTTAT 60.262 41.667 0.00 0.00 0.00 1.40
3586 9969 2.159114 GGGCGTTGCATACATCCATTTT 60.159 45.455 0.00 0.00 0.00 1.82
3599 9989 2.262471 CTGCTGAATCAGGGCGTTGC 62.262 60.000 12.66 0.00 31.21 4.17
3600 9990 0.674581 TCTGCTGAATCAGGGCGTTG 60.675 55.000 12.66 0.00 34.91 4.10
3603 9993 1.712977 GCTTCTGCTGAATCAGGGCG 61.713 60.000 12.66 0.00 34.91 6.13
3604 9994 1.382692 GGCTTCTGCTGAATCAGGGC 61.383 60.000 12.66 6.26 39.59 5.19
3606 9996 1.380524 CTGGCTTCTGCTGAATCAGG 58.619 55.000 12.66 0.00 39.59 3.86
3607 9997 1.380524 CCTGGCTTCTGCTGAATCAG 58.619 55.000 20.11 20.11 39.59 2.90
3608 9998 0.034767 CCCTGGCTTCTGCTGAATCA 60.035 55.000 6.48 7.69 39.59 2.57
3609 9999 0.750911 CCCCTGGCTTCTGCTGAATC 60.751 60.000 6.48 2.54 39.59 2.52
3612 10002 2.530151 ACCCCTGGCTTCTGCTGA 60.530 61.111 0.00 0.00 39.59 4.26
3614 10004 1.919600 GATGACCCCTGGCTTCTGCT 61.920 60.000 0.00 0.00 39.59 4.24
3615 10005 1.452833 GATGACCCCTGGCTTCTGC 60.453 63.158 0.00 0.00 38.76 4.26
3617 10007 0.985490 GAGGATGACCCCTGGCTTCT 60.985 60.000 0.00 0.00 36.49 2.85
3618 10008 1.529309 GAGGATGACCCCTGGCTTC 59.471 63.158 0.00 0.00 36.49 3.86
3619 10009 2.003548 GGAGGATGACCCCTGGCTT 61.004 63.158 0.00 0.00 36.49 4.35
3621 10011 1.575447 AAAGGAGGATGACCCCTGGC 61.575 60.000 0.00 0.00 37.09 4.85
3622 10012 1.893315 TAAAGGAGGATGACCCCTGG 58.107 55.000 0.00 0.00 37.09 4.45
3645 10035 6.129221 CGCATCAATAACACGAAAACACATTT 60.129 34.615 0.00 0.00 0.00 2.32
3646 10036 5.341993 CGCATCAATAACACGAAAACACATT 59.658 36.000 0.00 0.00 0.00 2.71
3655 11901 3.266636 ACCAATCGCATCAATAACACGA 58.733 40.909 0.00 0.00 37.15 4.35
3669 11915 0.670546 ACTTGCGGTCAGACCAATCG 60.671 55.000 20.13 6.49 38.47 3.34
3683 11938 1.548269 ACTAGCTCCAGAGTGACTTGC 59.452 52.381 0.00 0.00 0.00 4.01
3691 11946 2.426738 CTCCTTGTCACTAGCTCCAGAG 59.573 54.545 0.00 0.00 0.00 3.35
3694 11949 1.077169 TCCTCCTTGTCACTAGCTCCA 59.923 52.381 0.00 0.00 0.00 3.86
3969 13926 1.824852 TCTCGCAGGTCATTGAGCTTA 59.175 47.619 15.47 4.27 38.40 3.09
3979 13936 1.374758 CAACACCCTCTCGCAGGTC 60.375 63.158 0.13 0.00 41.51 3.85
3992 13949 6.642917 CAAACAAAGAGCAAATGATCAACAC 58.357 36.000 0.00 0.00 31.88 3.32
3996 13953 4.309099 GGCAAACAAAGAGCAAATGATCA 58.691 39.130 0.00 0.00 31.88 2.92
3997 13954 3.681417 GGGCAAACAAAGAGCAAATGATC 59.319 43.478 0.00 0.00 0.00 2.92
3998 13955 3.325716 AGGGCAAACAAAGAGCAAATGAT 59.674 39.130 0.00 0.00 0.00 2.45
3999 13956 2.699846 AGGGCAAACAAAGAGCAAATGA 59.300 40.909 0.00 0.00 0.00 2.57
4000 13957 3.116079 AGGGCAAACAAAGAGCAAATG 57.884 42.857 0.00 0.00 0.00 2.32
4001 13958 4.527816 TGATAGGGCAAACAAAGAGCAAAT 59.472 37.500 0.00 0.00 0.00 2.32
4002 13959 3.894427 TGATAGGGCAAACAAAGAGCAAA 59.106 39.130 0.00 0.00 0.00 3.68
4003 13960 3.255642 GTGATAGGGCAAACAAAGAGCAA 59.744 43.478 0.00 0.00 0.00 3.91
4004 13961 2.819608 GTGATAGGGCAAACAAAGAGCA 59.180 45.455 0.00 0.00 0.00 4.26
4005 13962 2.819608 TGTGATAGGGCAAACAAAGAGC 59.180 45.455 0.00 0.00 0.00 4.09
4006 13963 4.520492 ACTTGTGATAGGGCAAACAAAGAG 59.480 41.667 0.00 0.00 32.50 2.85
4007 13964 4.469657 ACTTGTGATAGGGCAAACAAAGA 58.530 39.130 0.00 0.00 32.50 2.52
4008 13965 4.853924 ACTTGTGATAGGGCAAACAAAG 57.146 40.909 0.00 0.00 32.50 2.77
4009 13966 4.404073 ACAACTTGTGATAGGGCAAACAAA 59.596 37.500 0.00 0.00 32.50 2.83
4010 13967 3.957497 ACAACTTGTGATAGGGCAAACAA 59.043 39.130 0.00 0.00 0.00 2.83
4011 13968 3.561143 ACAACTTGTGATAGGGCAAACA 58.439 40.909 0.00 0.00 0.00 2.83
4012 13969 4.584327 AACAACTTGTGATAGGGCAAAC 57.416 40.909 0.00 0.00 0.00 2.93
4013 13970 4.202202 CCAAACAACTTGTGATAGGGCAAA 60.202 41.667 0.00 0.00 32.65 3.68
4014 13971 3.320541 CCAAACAACTTGTGATAGGGCAA 59.679 43.478 0.00 0.00 32.65 4.52
4015 13972 2.890311 CCAAACAACTTGTGATAGGGCA 59.110 45.455 0.00 0.00 32.65 5.36
4016 13973 2.890945 ACCAAACAACTTGTGATAGGGC 59.109 45.455 0.00 0.00 32.65 5.19
4017 13974 3.888930 ACACCAAACAACTTGTGATAGGG 59.111 43.478 0.00 0.00 32.65 3.53
4018 13975 5.163561 ACAACACCAAACAACTTGTGATAGG 60.164 40.000 0.00 0.00 32.65 2.57
4019 13976 5.743398 CACAACACCAAACAACTTGTGATAG 59.257 40.000 3.27 0.00 42.82 2.08
4020 13977 5.184096 ACACAACACCAAACAACTTGTGATA 59.816 36.000 14.11 0.00 42.82 2.15
4021 13978 4.021544 ACACAACACCAAACAACTTGTGAT 60.022 37.500 14.11 0.00 42.82 3.06
4022 13979 3.319405 ACACAACACCAAACAACTTGTGA 59.681 39.130 14.11 0.00 42.82 3.58
4023 13980 3.648009 ACACAACACCAAACAACTTGTG 58.352 40.909 7.17 7.17 44.74 3.33
4028 13985 2.416701 CCCTGACACAACACCAAACAAC 60.417 50.000 0.00 0.00 0.00 3.32
4058 14015 0.034198 TTGTGATCGCGAGGGAAACA 59.966 50.000 16.66 11.18 0.00 2.83
4059 14016 0.442699 GTTGTGATCGCGAGGGAAAC 59.557 55.000 16.66 12.84 0.00 2.78
4062 14019 0.965866 AGAGTTGTGATCGCGAGGGA 60.966 55.000 16.66 0.00 0.00 4.20
4063 14020 0.526524 GAGAGTTGTGATCGCGAGGG 60.527 60.000 16.66 0.00 0.00 4.30
4080 14038 3.693085 CACACATGAAATTCTCCCAGGAG 59.307 47.826 7.43 7.43 43.21 3.69
4083 14041 4.155462 CAGACACACATGAAATTCTCCCAG 59.845 45.833 0.00 0.00 0.00 4.45
4089 14047 5.023920 CGCATACAGACACACATGAAATTC 58.976 41.667 0.00 0.00 0.00 2.17
4090 14048 4.694982 TCGCATACAGACACACATGAAATT 59.305 37.500 0.00 0.00 0.00 1.82
4096 14054 1.645034 GCTCGCATACAGACACACAT 58.355 50.000 0.00 0.00 0.00 3.21
4102 14060 3.166489 ACTTTAGGCTCGCATACAGAC 57.834 47.619 4.06 0.00 0.00 3.51
4106 14064 7.941795 TCTATAAAACTTTAGGCTCGCATAC 57.058 36.000 0.00 0.00 0.00 2.39
4113 14071 6.011893 ACCCTGGTTCTATAAAACTTTAGGCT 60.012 38.462 0.00 0.00 0.00 4.58
4138 14096 4.995058 AAGGGTGGAGCCGGGGAA 62.995 66.667 2.18 0.00 38.44 3.97
4142 14100 2.115266 AAACAAGGGTGGAGCCGG 59.885 61.111 0.00 0.00 38.44 6.13
4144 14102 2.574018 GGCAAACAAGGGTGGAGCC 61.574 63.158 0.00 0.00 34.39 4.70
4146 14104 1.106944 AACGGCAAACAAGGGTGGAG 61.107 55.000 0.00 0.00 0.00 3.86
4149 14107 0.457851 TCAAACGGCAAACAAGGGTG 59.542 50.000 0.00 0.00 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.